Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80395.t1 | RHN51072.1 | 96 | 125 | 5 | 0 | 1 | 125 | 185 | 309 | 2.40E-64 | 254.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80395.t1 | Q68FF9 | 42.5 | 106 | 61 | 0 | 22 | 127 | 150 | 255 | 3.2e-17 | 89.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80395.t1 | G7KJ00 | 96.0 | 125 | 5 | 0 | 1 | 125 | 144 | 268 | 1.7e-64 | 254.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene80395 | 0.831052 | 2.08E-55 | -1.69E-46 |
MS.gene049173 | MS.gene80395 | 0.817425 | 3.32E-52 | -1.69E-46 |
MS.gene049217 | MS.gene80395 | 0.864343 | 1.30E-64 | -1.69E-46 |
MS.gene049222 | MS.gene80395 | 0.863756 | 1.98E-64 | -1.69E-46 |
MS.gene049232 | MS.gene80395 | 0.846963 | 1.56E-59 | -1.69E-46 |
MS.gene049285 | MS.gene80395 | 0.862443 | 5.05E-64 | -1.69E-46 |
MS.gene049320 | MS.gene80395 | 0.844179 | 8.87E-59 | -1.69E-46 |
MS.gene049369 | MS.gene80395 | 0.808175 | 3.52E-50 | -1.69E-46 |
MS.gene049396 | MS.gene80395 | 0.826334 | 2.87E-54 | -1.69E-46 |
MS.gene049609 | MS.gene80395 | 0.84002 | 1.12E-57 | -1.69E-46 |
MS.gene049633 | MS.gene80395 | 0.832845 | 7.49E-56 | -1.69E-46 |
MS.gene049805 | MS.gene80395 | 0.817838 | 2.68E-52 | -1.69E-46 |
MS.gene05010 | MS.gene80395 | 0.815932 | 7.17E-52 | -1.69E-46 |
MS.gene050163 | MS.gene80395 | 0.82055 | 6.47E-53 | -1.69E-46 |
MS.gene050165 | MS.gene80395 | 0.820017 | 8.56E-53 | -1.69E-46 |
MS.gene050170 | MS.gene80395 | 0.801206 | 1.00E-48 | -1.69E-46 |
MS.gene050216 | MS.gene80395 | 0.839763 | 1.30E-57 | -1.69E-46 |
MS.gene050323 | MS.gene80395 | 0.858451 | 8.17E-63 | -1.69E-46 |
MS.gene050333 | MS.gene80395 | 0.842258 | 2.89E-58 | -1.69E-46 |
MS.gene050444 | MS.gene80395 | 0.824744 | 6.84E-54 | -1.69E-46 |
MS.gene050496 | MS.gene80395 | 0.822994 | 1.76E-53 | -1.69E-46 |
MS.gene050499 | MS.gene80395 | 0.809674 | 1.68E-50 | -1.69E-46 |
MS.gene050504 | MS.gene80395 | 0.839588 | 1.45E-57 | -1.69E-46 |
MS.gene050518 | MS.gene80395 | 0.822895 | 1.85E-53 | -1.69E-46 |
MS.gene050538 | MS.gene80395 | 0.811087 | 8.34E-51 | -1.69E-46 |
MS.gene050593 | MS.gene80395 | 0.802073 | 6.67E-49 | -1.69E-46 |
MS.gene050612 | MS.gene80395 | 0.831892 | 1.29E-55 | -1.69E-46 |
MS.gene050662 | MS.gene80395 | 0.817495 | 3.20E-52 | -1.69E-46 |
MS.gene050675 | MS.gene80395 | 0.810095 | 1.37E-50 | -1.69E-46 |
MS.gene050686 | MS.gene80395 | 0.806224 | 9.12E-50 | -1.69E-46 |
MS.gene050699 | MS.gene80395 | 0.802502 | 5.44E-49 | -1.69E-46 |
MS.gene050747 | MS.gene80395 | 0.825657 | 4.16E-54 | -1.69E-46 |
MS.gene050772 | MS.gene80395 | 0.869094 | 4.01E-66 | -1.69E-46 |
MS.gene050809 | MS.gene80395 | -0.807152 | 5.81E-50 | -1.69E-46 |
MS.gene05080 | MS.gene80395 | 0.836747 | 7.81E-57 | -1.69E-46 |
MS.gene05081 | MS.gene80395 | 0.802499 | 5.45E-49 | -1.69E-46 |
MS.gene050868 | MS.gene80395 | 0.848158 | 7.33E-60 | -1.69E-46 |
MS.gene050871 | MS.gene80395 | 0.849762 | 2.63E-60 | -1.69E-46 |
MS.gene050950 | MS.gene80395 | 0.824622 | 7.30E-54 | -1.69E-46 |
MS.gene05100 | MS.gene80395 | 0.805525 | 1.28E-49 | -1.69E-46 |
MS.gene051551 | MS.gene80395 | 0.808697 | 2.73E-50 | -1.69E-46 |
MS.gene051666 | MS.gene80395 | 0.81319 | 2.90E-51 | -1.69E-46 |
MS.gene051694 | MS.gene80395 | 0.80346 | 3.45E-49 | -1.69E-46 |
MS.gene051734 | MS.gene80395 | 0.801579 | 8.42E-49 | -1.69E-46 |
MS.gene051810 | MS.gene80395 | 0.830356 | 3.08E-55 | -1.69E-46 |
MS.gene051838 | MS.gene80395 | 0.811486 | 6.83E-51 | -1.69E-46 |
MS.gene051858 | MS.gene80395 | 0.850046 | 2.19E-60 | -1.69E-46 |
MS.gene052164 | MS.gene80395 | 0.820764 | 5.77E-53 | -1.69E-46 |
MS.gene052271 | MS.gene80395 | 0.809961 | 1.46E-50 | -1.69E-46 |
MS.gene052379 | MS.gene80395 | 0.832492 | 9.17E-56 | -1.69E-46 |
MS.gene052482 | MS.gene80395 | 0.828868 | 7.08E-55 | -1.69E-46 |
MS.gene052486 | MS.gene80395 | 0.834191 | 3.46E-56 | -1.69E-46 |
MS.gene052503 | MS.gene80395 | 0.807829 | 4.18E-50 | -1.69E-46 |
MS.gene052615 | MS.gene80395 | 0.836082 | 1.15E-56 | -1.69E-46 |
MS.gene052822 | MS.gene80395 | 0.803179 | 3.94E-49 | -1.69E-46 |
MS.gene052823 | MS.gene80395 | 0.806546 | 7.80E-50 | -1.69E-46 |
MS.gene052870 | MS.gene80395 | 0.846567 | 2.00E-59 | -1.69E-46 |
MS.gene052872 | MS.gene80395 | 0.849361 | 3.40E-60 | -1.69E-46 |
MS.gene052916 | MS.gene80395 | 0.843239 | 1.58E-58 | -1.69E-46 |
MS.gene052966 | MS.gene80395 | 0.828462 | 8.87E-55 | -1.69E-46 |
MS.gene053104 | MS.gene80395 | 0.82821 | 1.02E-54 | -1.69E-46 |
MS.gene053207 | MS.gene80395 | 0.805432 | 1.34E-49 | -1.69E-46 |
MS.gene053213 | MS.gene80395 | 0.841482 | 4.63E-58 | -1.69E-46 |
MS.gene053286 | MS.gene80395 | 0.836838 | 7.40E-57 | -1.69E-46 |
MS.gene053420 | MS.gene80395 | -0.826277 | 2.96E-54 | -1.69E-46 |
MS.gene053449 | MS.gene80395 | 0.82233 | 2.51E-53 | -1.69E-46 |
MS.gene053479 | MS.gene80395 | 0.818375 | 2.03E-52 | -1.69E-46 |
MS.gene053480 | MS.gene80395 | 0.810475 | 1.13E-50 | -1.69E-46 |
MS.gene053561 | MS.gene80395 | -0.810838 | 9.44E-51 | -1.69E-46 |
MS.gene053562 | MS.gene80395 | -0.802557 | 5.30E-49 | -1.69E-46 |
MS.gene053574 | MS.gene80395 | 0.852414 | 4.69E-61 | -1.69E-46 |
MS.gene053626 | MS.gene80395 | 0.806999 | 6.26E-50 | -1.69E-46 |
MS.gene053632 | MS.gene80395 | 0.827508 | 1.50E-54 | -1.69E-46 |
MS.gene053633 | MS.gene80395 | 0.80858 | 2.89E-50 | -1.69E-46 |
MS.gene053824 | MS.gene80395 | 0.871559 | 6.23E-67 | -1.69E-46 |
MS.gene053916 | MS.gene80395 | 0.834328 | 3.19E-56 | -1.69E-46 |
MS.gene054003 | MS.gene80395 | 0.825002 | 5.94E-54 | -1.69E-46 |
MS.gene054408 | MS.gene80395 | 0.825707 | 4.05E-54 | -1.69E-46 |
MS.gene054595 | MS.gene80395 | 0.83091 | 2.25E-55 | -1.69E-46 |
MS.gene054600 | MS.gene80395 | 0.829033 | 6.45E-55 | -1.69E-46 |
MS.gene054642 | MS.gene80395 | 0.852444 | 4.60E-61 | -1.69E-46 |
MS.gene054706 | MS.gene80395 | -0.803207 | 3.89E-49 | -1.69E-46 |
MS.gene05494 | MS.gene80395 | 0.843966 | 1.01E-58 | -1.69E-46 |
MS.gene054954 | MS.gene80395 | 0.837305 | 5.62E-57 | -1.69E-46 |
MS.gene05505 | MS.gene80395 | 0.848852 | 4.71E-60 | -1.69E-46 |
MS.gene055154 | MS.gene80395 | -0.806691 | 7.28E-50 | -1.69E-46 |
MS.gene055206 | MS.gene80395 | 0.839504 | 1.52E-57 | -1.69E-46 |
MS.gene055212 | MS.gene80395 | 0.828718 | 7.69E-55 | -1.69E-46 |
MS.gene055224 | MS.gene80395 | 0.831815 | 1.35E-55 | -1.69E-46 |
MS.gene055362 | MS.gene80395 | 0.828872 | 7.06E-55 | -1.69E-46 |
MS.gene055502 | MS.gene80395 | 0.874213 | 8.05E-68 | -1.69E-46 |
MS.gene055577 | MS.gene80395 | 0.857901 | 1.19E-62 | -1.69E-46 |
MS.gene055636 | MS.gene80395 | 0.807942 | 3.95E-50 | -1.69E-46 |
MS.gene055638 | MS.gene80395 | 0.825593 | 4.31E-54 | -1.69E-46 |
MS.gene055722 | MS.gene80395 | 0.852928 | 3.35E-61 | -1.69E-46 |
MS.gene055748 | MS.gene80395 | 0.805476 | 1.31E-49 | -1.69E-46 |
MS.gene055750 | MS.gene80395 | 0.843758 | 1.15E-58 | -1.69E-46 |
MS.gene055751 | MS.gene80395 | 0.816315 | 5.89E-52 | -1.69E-46 |
MS.gene05589 | MS.gene80395 | 0.826064 | 3.33E-54 | -1.69E-46 |
MS.gene05592 | MS.gene80395 | 0.824267 | 8.85E-54 | -1.69E-46 |
MS.gene055941 | MS.gene80395 | 0.859893 | 3.02E-63 | -1.69E-46 |
MS.gene056046 | MS.gene80395 | 0.815195 | 1.05E-51 | -1.69E-46 |
MS.gene056166 | MS.gene80395 | 0.801686 | 8.01E-49 | -1.69E-46 |
MS.gene056374 | MS.gene80395 | 0.813174 | 2.93E-51 | -1.69E-46 |
MS.gene056387 | MS.gene80395 | 0.815639 | 8.34E-52 | -1.69E-46 |
MS.gene056422 | MS.gene80395 | 0.81205 | 5.15E-51 | -1.69E-46 |
MS.gene056448 | MS.gene80395 | 0.832238 | 1.06E-55 | -1.69E-46 |
MS.gene056449 | MS.gene80395 | 0.805138 | 1.54E-49 | -1.69E-46 |
MS.gene056487 | MS.gene80395 | 0.834359 | 3.14E-56 | -1.69E-46 |
MS.gene056504 | MS.gene80395 | 0.853316 | 2.59E-61 | -1.69E-46 |
MS.gene056510 | MS.gene80395 | 0.838849 | 2.25E-57 | -1.69E-46 |
MS.gene056549 | MS.gene80395 | 0.831493 | 1.62E-55 | -1.69E-46 |
MS.gene056657 | MS.gene80395 | 0.861135 | 1.27E-63 | -1.69E-46 |
MS.gene056692 | MS.gene80395 | 0.811836 | 5.73E-51 | -1.69E-46 |
MS.gene056946 | MS.gene80395 | 0.836512 | 8.96E-57 | -1.69E-46 |
MS.gene056947 | MS.gene80395 | 0.806887 | 6.61E-50 | -1.69E-46 |
MS.gene057076 | MS.gene80395 | 0.850384 | 1.76E-60 | -1.69E-46 |
MS.gene057086 | MS.gene80395 | 0.810854 | 9.37E-51 | -1.69E-46 |
MS.gene057331 | MS.gene80395 | 0.800143 | 1.65E-48 | -1.69E-46 |
MS.gene057416 | MS.gene80395 | 0.816954 | 4.24E-52 | -1.69E-46 |
MS.gene057831 | MS.gene80395 | 0.802881 | 4.55E-49 | -1.69E-46 |
MS.gene057857 | MS.gene80395 | 0.807605 | 4.66E-50 | -1.69E-46 |
MS.gene05787 | MS.gene80395 | 0.81013 | 1.34E-50 | -1.69E-46 |
MS.gene057926 | MS.gene80395 | 0.851701 | 7.47E-61 | -1.69E-46 |
MS.gene058130 | MS.gene80395 | 0.831489 | 1.62E-55 | -1.69E-46 |
MS.gene058157 | MS.gene80395 | 0.830462 | 2.90E-55 | -1.69E-46 |
MS.gene058338 | MS.gene80395 | 0.840698 | 7.43E-58 | -1.69E-46 |
MS.gene05837 | MS.gene80395 | 0.848434 | 6.15E-60 | -1.69E-46 |
MS.gene058419 | MS.gene80395 | 0.853519 | 2.26E-61 | -1.69E-46 |
MS.gene058723 | MS.gene80395 | 0.813264 | 2.79E-51 | -1.69E-46 |
MS.gene058773 | MS.gene80395 | 0.849709 | 2.72E-60 | -1.69E-46 |
MS.gene058838 | MS.gene80395 | 0.821268 | 4.42E-53 | -1.69E-46 |
MS.gene058840 | MS.gene80395 | -0.810747 | 9.88E-51 | -1.69E-46 |
MS.gene059022 | MS.gene80395 | 0.843077 | 1.75E-58 | -1.69E-46 |
MS.gene059023 | MS.gene80395 | 0.846979 | 1.55E-59 | -1.69E-46 |
MS.gene059029 | MS.gene80395 | 0.828219 | 1.02E-54 | -1.69E-46 |
MS.gene05913 | MS.gene80395 | 0.874581 | 6.04E-68 | -1.69E-46 |
MS.gene059305 | MS.gene80395 | 0.842946 | 1.89E-58 | -1.69E-46 |
MS.gene05934 | MS.gene80395 | 0.850866 | 1.29E-60 | -1.69E-46 |
MS.gene059367 | MS.gene80395 | 0.836512 | 8.96E-57 | -1.69E-46 |
MS.gene059368 | MS.gene80395 | 0.80093 | 1.14E-48 | -1.69E-46 |
MS.gene059536 | MS.gene80395 | 0.819568 | 1.08E-52 | -1.69E-46 |
MS.gene059677 | MS.gene80395 | 0.838475 | 2.81E-57 | -1.69E-46 |
MS.gene059718 | MS.gene80395 | 0.845613 | 3.64E-59 | -1.69E-46 |
MS.gene059801 | MS.gene80395 | 0.81914 | 1.36E-52 | -1.69E-46 |
MS.gene059865 | MS.gene80395 | 0.842426 | 2.60E-58 | -1.69E-46 |
MS.gene059902 | MS.gene80395 | 0.846591 | 1.97E-59 | -1.69E-46 |
MS.gene060482 | MS.gene80395 | 0.848005 | 8.07E-60 | -1.69E-46 |
MS.gene060703 | MS.gene80395 | 0.851513 | 8.45E-61 | -1.69E-46 |
MS.gene060762 | MS.gene80395 | 0.843463 | 1.38E-58 | -1.69E-46 |
MS.gene060778 | MS.gene80395 | 0.830339 | 3.11E-55 | -1.69E-46 |
MS.gene06077 | MS.gene80395 | 0.830139 | 3.48E-55 | -1.69E-46 |
MS.gene060804 | MS.gene80395 | 0.837143 | 6.18E-57 | -1.69E-46 |
MS.gene060818 | MS.gene80395 | 0.82442 | 8.15E-54 | -1.69E-46 |
MS.gene060835 | MS.gene80395 | 0.817819 | 2.71E-52 | -1.69E-46 |
MS.gene060837 | MS.gene80395 | 0.825974 | 3.50E-54 | -1.69E-46 |
MS.gene06092 | MS.gene80395 | 0.81808 | 2.36E-52 | -1.69E-46 |
MS.gene06097 | MS.gene80395 | 0.800196 | 1.61E-48 | -1.69E-46 |
MS.gene060982 | MS.gene80395 | 0.833721 | 4.53E-56 | -1.69E-46 |
MS.gene061041 | MS.gene80395 | 0.832388 | 9.73E-56 | -1.69E-46 |
MS.gene061134 | MS.gene80395 | 0.817335 | 3.48E-52 | -1.69E-46 |
MS.gene061150 | MS.gene80395 | 0.811722 | 6.07E-51 | -1.69E-46 |
MS.gene061200 | MS.gene80395 | 0.814726 | 1.33E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80395.t1 | MTR_6g043740 | 96.000 | 125 | 5 | 0 | 1 | 125 | 144 | 268 | 8.97e-85 | 248 |
MS.gene80395.t1 | MTR_6g037340 | 82.540 | 126 | 22 | 0 | 1 | 126 | 142 | 267 | 7.06e-73 | 218 |
MS.gene80395.t1 | MTR_7g066760 | 43.396 | 106 | 58 | 2 | 22 | 126 | 160 | 264 | 1.14e-20 | 84.3 |
MS.gene80395.t1 | MTR_4g064025 | 42.045 | 88 | 49 | 2 | 40 | 126 | 174 | 260 | 3.32e-15 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80395.t1 | AT5G16010 | 66.929 | 127 | 41 | 1 | 1 | 126 | 141 | 267 | 3.72e-59 | 183 |
MS.gene80395.t1 | AT2G38050 | 33.019 | 106 | 70 | 1 | 22 | 126 | 156 | 261 | 7.58e-16 | 71.6 |
Find 24 sgRNAs with CRISPR-Local
Find 31 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAATAGCCTTAACATTCTT+AGG | 0.263013 | 6.3:-28663279 | None:intergenic |
CATTATCTCTTTGAGATCAT+AGG | 0.312995 | 6.3:+28663129 | MS.gene80395:CDS |
TACAAGAAACAATGTGATTC+CGG | 0.321584 | 6.3:-28662995 | None:intergenic |
TATCTTCTATCCAAATTAAG+AGG | 0.370538 | 6.3:+28663045 | MS.gene80395:CDS |
AAATCAAACAAGCCACCTTT+AGG | 0.388800 | 6.3:-28663093 | None:intergenic |
GGAATCACATTGTTTCTTGT+AGG | 0.401990 | 6.3:+28662997 | MS.gene80395:CDS |
AATAGATCGATTGGTGGTTC+TGG | 0.413052 | 6.3:-28662967 | None:intergenic |
ACAAGAAACAATGTGATTCC+GGG | 0.450458 | 6.3:-28662994 | None:intergenic |
ATTATCTCTTTGAGATCATA+GGG | 0.450657 | 6.3:+28663130 | MS.gene80395:CDS |
TATTCGTTCTCTTTCGCCAT+AGG | 0.453501 | 6.3:+28663186 | MS.gene80395:CDS |
CTATCCAAATTAAGAGGAAA+AGG | 0.465185 | 6.3:+28663051 | MS.gene80395:CDS |
TTGTTTCTTGTAGGCATCAC+CGG | 0.480456 | 6.3:+28663006 | MS.gene80395:CDS |
TTGCATAACTCCTACCCAAA+AGG | 0.506130 | 6.3:-28663221 | None:intergenic |
ATACAATGTCTGAGAAATGA+AGG | 0.509558 | 6.3:-28663166 | None:intergenic |
AAAGAATACAAGATTCCTAA+AGG | 0.529482 | 6.3:+28663078 | MS.gene80395:CDS |
CCGGGATACAATAGATCGAT+TGG | 0.532651 | 6.3:-28662976 | None:intergenic |
ATGATCTCAAAGAGATAATG+AGG | 0.534767 | 6.3:-28663126 | None:intergenic |
ATAATGATGGTAGAAGTTGC+CGG | 0.544164 | 6.3:-28663025 | None:intergenic |
ATTTGGATAGAAGATAATGA+TGG | 0.547206 | 6.3:-28663038 | None:intergenic |
GGAGTTATGCAACTAGAGAA+TGG | 0.568134 | 6.3:+28663232 | MS.gene80395:CDS |
CCAATCGATCTATTGTATCC+CGG | 0.590454 | 6.3:+28662976 | MS.gene80395:CDS |
GAATACAAGATTCCTAAAGG+TGG | 0.614245 | 6.3:+28663081 | MS.gene80395:CDS |
GGATACAATAGATCGATTGG+TGG | 0.622127 | 6.3:-28662973 | None:intergenic |
GTTCTGGAAGATTCGACGTG+AGG | 0.646091 | 6.3:-28662951 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAGAATACAAGATTCCTAA+AGG | + | chr6.3:28663078-28663097 | MS.gene80395:CDS | 25.0% |
! | ATTTGGATAGAAGATAATGA+TGG | - | chr6.3:28663041-28663060 | None:intergenic | 25.0% |
! | TATCTTCTATCCAAATTAAG+AGG | + | chr6.3:28663045-28663064 | MS.gene80395:CDS | 25.0% |
!! | ATAATAGCCTTAACATTCTT+AGG | - | chr6.3:28663282-28663301 | None:intergenic | 25.0% |
!! | TGATTTTCCTAAGAATGTTA+AGG | + | chr6.3:28663272-28663291 | MS.gene80395:CDS | 25.0% |
!!! | ATTATCTCTTTGAGATCATA+GGG | + | chr6.3:28663130-28663149 | MS.gene80395:CDS | 25.0% |
ATACAATGTCTGAGAAATGA+AGG | - | chr6.3:28663169-28663188 | None:intergenic | 30.0% | |
ATGATCTCAAAGAGATAATG+AGG | - | chr6.3:28663129-28663148 | None:intergenic | 30.0% | |
CTATCCAAATTAAGAGGAAA+AGG | + | chr6.3:28663051-28663070 | MS.gene80395:CDS | 30.0% | |
TACAAGAAACAATGTGATTC+CGG | - | chr6.3:28662998-28663017 | None:intergenic | 30.0% | |
!! | CATTATCTCTTTGAGATCAT+AGG | + | chr6.3:28663129-28663148 | MS.gene80395:CDS | 30.0% |
!! | TTTGAGATCATAGGGTTTTA+CGG | + | chr6.3:28663138-28663157 | MS.gene80395:CDS | 30.0% |
AAATCAAACAAGCCACCTTT+AGG | - | chr6.3:28663096-28663115 | None:intergenic | 35.0% | |
AAGGTAAAAAGTAGTGCCTA+TGG | - | chr6.3:28663205-28663224 | None:intergenic | 35.0% | |
ACAAGAAACAATGTGATTCC+GGG | - | chr6.3:28662997-28663016 | None:intergenic | 35.0% | |
ATAATGATGGTAGAAGTTGC+CGG | - | chr6.3:28663028-28663047 | None:intergenic | 35.0% | |
GAATACAAGATTCCTAAAGG+TGG | + | chr6.3:28663081-28663100 | MS.gene80395:CDS | 35.0% | |
! | GGAATCACATTGTTTCTTGT+AGG | + | chr6.3:28662997-28663016 | MS.gene80395:CDS | 35.0% |
! | TTCGCCTTTTCCTCTTAATT+TGG | - | chr6.3:28663058-28663077 | None:intergenic | 35.0% |
!!! | AGGCACTACTTTTTACCTTT+TGG | + | chr6.3:28663206-28663225 | MS.gene80395:CDS | 35.0% |
!!! | CTACTTTTTACCTTTTGGGT+AGG | + | chr6.3:28663211-28663230 | MS.gene80395:CDS | 35.0% |
!!! | GGCACTACTTTTTACCTTTT+GGG | + | chr6.3:28663207-28663226 | MS.gene80395:CDS | 35.0% |
CCAATCGATCTATTGTATCC+CGG | + | chr6.3:28662976-28662995 | MS.gene80395:CDS | 40.0% | |
GGAGTTATGCAACTAGAGAA+TGG | + | chr6.3:28663232-28663251 | MS.gene80395:CDS | 40.0% | |
GGATACAATAGATCGATTGG+TGG | - | chr6.3:28662976-28662995 | None:intergenic | 40.0% | |
TATTCGTTCTCTTTCGCCAT+AGG | + | chr6.3:28663186-28663205 | MS.gene80395:CDS | 40.0% | |
TTGCATAACTCCTACCCAAA+AGG | - | chr6.3:28663224-28663243 | None:intergenic | 40.0% | |
! | AATAGATCGATTGGTGGTTC+TGG | - | chr6.3:28662970-28662989 | None:intergenic | 40.0% |
! | TTGTTTCTTGTAGGCATCAC+CGG | + | chr6.3:28663006-28663025 | MS.gene80395:CDS | 40.0% |
CCGGGATACAATAGATCGAT+TGG | - | chr6.3:28662979-28662998 | None:intergenic | 45.0% | |
!! | GTTCTGGAAGATTCGACGTG+AGG | - | chr6.3:28662954-28662973 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 28662934 | 28663317 | 28662934 | ID=MS.gene80395 |
chr6.3 | mRNA | 28662934 | 28663317 | 28662934 | ID=MS.gene80395.t1;Parent=MS.gene80395 |
chr6.3 | exon | 28662934 | 28663317 | 28662934 | ID=MS.gene80395.t1.exon1;Parent=MS.gene80395.t1 |
chr6.3 | CDS | 28662934 | 28663317 | 28662934 | ID=cds.MS.gene80395.t1;Parent=MS.gene80395.t1 |
Gene Sequence |
Protein sequence |