AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015077.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015077.01.T01 MTR_3g062890 91.064 235 9 2 1 234 1 224 2.91e-158 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015077.01.T01 AT5G58260 65.278 216 61 2 17 232 8 209 3.80e-98 285
MsG0380015077.01.T01 AT5G58260 65.409 159 52 1 17 175 8 163 1.56e-71 216

Find 85 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAACATTGGTTAGAAAT+TGG 0.199134 3:-64929195 None:intergenic
TTGTAGTCTCTTTGTTTCTT+TGG 0.209156 3:-64929288 None:intergenic
CATGAATCTCAGGCTCATTT+AGG 0.248243 3:+64930299 MsG0380015077.01.T01:intron
GTAACAGTGATAGAAGTAAA+AGG 0.281626 3:+64929443 MsG0380015077.01.T01:CDS
ATTCATCCTTATATATCTTT+TGG 0.282822 3:-64931455 None:intergenic
TTGGTTAGAAATTGGAAATT+AGG 0.298624 3:-64929187 None:intergenic
ACCACCAGTCCTTTGGCATT+TGG 0.308230 3:-64930386 None:intergenic
ACTTTGGTGAGAGTGGTTTC+AGG 0.312237 3:-64929679 None:intergenic
TGACTTCATTGGAGGAGATT+TGG 0.322097 3:+64929498 MsG0380015077.01.T01:CDS
GATTTGGTTAAATTTGATAT+TGG 0.335397 3:+64929514 MsG0380015077.01.T01:CDS
GACCTTACTGCTCGTGGTCT+TGG 0.356166 3:+64929652 MsG0380015077.01.T01:CDS
TATCTGCAAGTGCCTTGATT+TGG 0.379408 3:-64931422 None:intergenic
AGTACACCAAAAGATATATA+AGG 0.383201 3:+64931449 MsG0380015077.01.T01:three_prime_UTR
GGGAAATACCACCTTGCTAT+TGG 0.388797 3:-64930329 None:intergenic
GCTATGAAGCTGTTCCTTGT+TGG 0.392835 3:-64929370 None:intergenic
ATGGGATTAGGTGACTTCAT+TGG 0.442642 3:+64929487 MsG0380015077.01.T01:CDS
AAGCCACTCAACGAAATTGC+TGG 0.444434 3:+64931297 MsG0380015077.01.T01:CDS
ATGTTAGCCTCTGCAAGCTT+AGG 0.446007 3:+64929313 MsG0380015077.01.T01:CDS
GATCCACACCACCAGTCCTT+TGG 0.451001 3:-64930393 None:intergenic
GATGAATGATATTAGTTGTA+TGG 0.451236 3:-64929159 None:intergenic
TAACACTGTAAGATTGATGA+TGG 0.453017 3:+64929402 MsG0380015077.01.T01:CDS
TCATTGCTGAATGTGGAAAT+TGG 0.454528 3:+64931020 MsG0380015077.01.T01:CDS
TCAGCAATGACCCTCACATT+AGG 0.462929 3:-64931007 None:intergenic
TGCAGCAGTGGAATGGGATT+AGG 0.468261 3:+64929475 MsG0380015077.01.T01:CDS
TGCTGGACTGACCACTAGTC+AGG 0.471357 3:+64931314 MsG0380015077.01.T01:CDS
AAGCTTGAACTTCCAAATCA+AGG 0.472560 3:+64931410 MsG0380015077.01.T01:three_prime_UTR
ACCAGTCCTTTGGCATTTGG+TGG 0.474336 3:-64930383 None:intergenic
TCCAATCTGTAATCAACCTC+TGG 0.475049 3:-64930353 None:intergenic
GCCTCTGCAAGCTTAGGTTG+TGG 0.477414 3:+64929319 MsG0380015077.01.T01:CDS
GTGAAATGCAGCAGTGGAAT+GGG 0.480259 3:+64929469 MsG0380015077.01.T01:CDS
GTTGAAAGATAAAGAAACAT+TGG 0.490021 3:-64929206 None:intergenic
AAGATGAAAATATTCCTACT+TGG 0.493351 3:-64931382 None:intergenic
ACCAGAGGTTGATTACAGAT+TGG 0.496749 3:+64930352 MsG0380015077.01.T01:CDS
TAACAGTGATAGAAGTAAAA+GGG 0.496959 3:+64929444 MsG0380015077.01.T01:CDS
AGTGAAATGCAGCAGTGGAA+TGG 0.525909 3:+64929468 MsG0380015077.01.T01:CDS
TGTTCCTTAGGTTCTCTCCA+AGG 0.526918 3:+64930946 MsG0380015077.01.T01:intron
AAGGAATTGTAGTTCAGCCT+TGG 0.529522 3:-64930963 None:intergenic
TTGCTCTGCTGCCAACACTA+AGG 0.531993 3:+64930984 MsG0380015077.01.T01:CDS
CCTCATGAAGGAGGGTATGA+AGG 0.537717 3:+64929586 MsG0380015077.01.T01:CDS
TTTCTTGACCTTACTGCTCG+TGG 0.540585 3:+64929646 MsG0380015077.01.T01:CDS
AGGGTGAACTTTGGTGAGAG+TGG 0.540770 3:-64929686 None:intergenic
AGTCCAGCAATTTCGTTGAG+TGG 0.542281 3:-64931300 None:intergenic
AGGACAAACAGGGTGAACTT+TGG 0.547356 3:-64929695 None:intergenic
GTACATATCACTCATGGTTG+TGG 0.558222 3:-64931505 None:intergenic
GAGAAATGAGATAAAGTGAT+CGG 0.565737 3:-64929134 None:intergenic
GAGTGATATGTACATTCTCA+AGG 0.567704 3:+64931515 MsG0380015077.01.T01:three_prime_UTR
GGATTAGGTGACTTCATTGG+AGG 0.569123 3:+64929490 MsG0380015077.01.T01:CDS
AATCTGTAATCAACCTCTGG+TGG 0.569201 3:-64930350 None:intergenic
GTTAGAAATTGGAAATTAGG+CGG 0.573232 3:-64929184 None:intergenic
CACCAAGACCACGAGCAGTA+AGG 0.576596 3:-64929654 None:intergenic
ATATATACTCCTCATGAAGG+AGG 0.584569 3:+64929577 MsG0380015077.01.T01:CDS
AGAAATTGGAAATTAGGCGG+AGG 0.586679 3:-64929181 None:intergenic
ACCACCAAATGCCAAAGGAC+TGG 0.587702 3:+64930382 MsG0380015077.01.T01:CDS
TGCTGTATGTTAGAGCATGT+TGG 0.587889 3:-64929346 None:intergenic
CTGTAAGATTGATGATGGGA+TGG 0.592923 3:+64929407 MsG0380015077.01.T01:CDS
TTATCGCGTCTTCAACGTCA+AGG 0.593630 3:+64929616 MsG0380015077.01.T01:CDS
GAGAATGTACATATCACTCA+TGG 0.594264 3:-64931511 None:intergenic
TTAAATTTGATATTGGACGT+TGG 0.596364 3:+64929521 MsG0380015077.01.T01:CDS
AACACTAAGGCCTAATGTGA+GGG 0.598775 3:+64930997 MsG0380015077.01.T01:CDS
GCAATATATACTCCTCATGA+AGG 0.600567 3:+64929574 MsG0380015077.01.T01:CDS
GTGAGGGTCATTGCTGAATG+TGG 0.601568 3:+64931013 MsG0380015077.01.T01:CDS
CTCACATTAGGCCTTAGTGT+TGG 0.607755 3:-64930995 None:intergenic
CTATCAAGCGTCCTGACTAG+TGG 0.611389 3:-64931325 None:intergenic
TTAGTGTTGGCAGCAGAGCA+AGG 0.611894 3:-64930982 None:intergenic
ATGCCAAAGGACTGGTGGTG+TGG 0.615122 3:+64930390 MsG0380015077.01.T01:CDS
CAACACTAAGGCCTAATGTG+AGG 0.616666 3:+64930996 MsG0380015077.01.T01:CDS
GAATGATATTAGTTGTATGG+TGG 0.617217 3:-64929156 None:intergenic
GTAAAGCATAATCCACACCT+TGG 0.628287 3:-64930423 None:intergenic
ATCTGTAATCAACCTCTGGT+GGG 0.628296 3:-64930349 None:intergenic
TCTGCAAGCTTAGGTTGTGG+AGG 0.630890 3:+64929322 MsG0380015077.01.T01:CDS
AGATTGATGATGGGATGGAG+AGG 0.631584 3:+64929412 MsG0380015077.01.T01:CDS
CCTTCATACCCTCCTTCATG+AGG 0.634611 3:-64929586 None:intergenic
TAGGAAAGCAACCAATAGCA+AGG 0.634862 3:+64930318 MsG0380015077.01.T01:CDS
TATATACTCCTCATGAAGGA+GGG 0.636161 3:+64929578 MsG0380015077.01.T01:CDS
GGTGTGGATCATTGAAGCCA+AGG 0.636653 3:+64930406 MsG0380015077.01.T01:CDS
AGGGCAGTGAAATGCAGCAG+TGG 0.648171 3:+64929463 MsG0380015077.01.T01:CDS
CTAACATACAGCAACCAACA+AGG 0.653000 3:+64929356 MsG0380015077.01.T01:CDS
GGATCATTGAAGCCAAGGTG+TGG 0.653324 3:+64930411 MsG0380015077.01.T01:CDS
TCCACAACCTAAGCTTGCAG+AGG 0.654833 3:-64929320 None:intergenic
GCATTACCACCAAATGCCAA+AGG 0.660442 3:+64930377 MsG0380015077.01.T01:CDS
AAGGTGGTATTTCCCACCAG+AGG 0.661184 3:+64930337 MsG0380015077.01.T01:CDS
AACACTGTAAGATTGATGAT+GGG 0.665364 3:+64929403 MsG0380015077.01.T01:CDS
ACCAAATGCCAAAGGACTGG+TGG 0.665822 3:+64930385 MsG0380015077.01.T01:CDS
TGATCAGGAGAAAGTTTACG+TGG 0.681866 3:+64931274 MsG0380015077.01.T01:intron
GAAAGCAACCAATAGCAAGG+TGG 0.723318 3:+64930321 MsG0380015077.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATTATTAGAAAATT+TGG - Chr3:64931053-64931072 None:intergenic 10.0%
!!! TTGTTTTTATGAAAATAAAA+GGG + Chr3:64930636-64930655 MsG0380015077.01.T01:intron 10.0%
!!! TTTGTTTTTATGAAAATAAA+AGG + Chr3:64930635-64930654 MsG0380015077.01.T01:intron 10.0%
!! ATTATTTGTATTATATCTCT+AGG + Chr3:64930572-64930591 MsG0380015077.01.T01:intron 15.0%
!! TGAATATACATTAATTTATC+TGG + Chr3:64930891-64930910 MsG0380015077.01.T01:intron 15.0%
!! AAACAATTTCATCAGAAAAT+AGG - Chr3:64930614-64930633 None:intergenic 20.0%
!! TCATGGAAAGTTATAAATAA+AGG + Chr3:64930716-64930735 MsG0380015077.01.T01:intron 20.0%
!!! AAGCTTTGAAAATTTTGTTT+AGG + Chr3:64929743-64929762 MsG0380015077.01.T01:intron 20.0%
!!! ATTCATCCTTATATATCTTT+TGG - Chr3:64931458-64931477 None:intergenic 20.0%
!!! CTCCTTTAAAATTTCTTTTT+CGG + Chr3:64929995-64930014 MsG0380015077.01.T01:intron 20.0%
!!! GATTTGGTTAAATTTGATAT+TGG + Chr3:64929514-64929533 MsG0380015077.01.T01:CDS 20.0%
!!! TTTTTATGAAAATAAAAGGG+AGG + Chr3:64930639-64930658 MsG0380015077.01.T01:intron 20.0%
! AAGAAAGAAAAAAAACTCAC+AGG - Chr3:64929718-64929737 None:intergenic 25.0%
! AAGATGAAAATATTCCTACT+TGG - Chr3:64931385-64931404 None:intergenic 25.0%
! AATTTCATCAGAAAATAGGT+GGG - Chr3:64930610-64930629 None:intergenic 25.0%
! AATTTCCAACTTTATATGCA+AGG + Chr3:64931177-64931196 MsG0380015077.01.T01:intron 25.0%
! AGTACACCAAAAGATATATA+AGG + Chr3:64931449-64931468 MsG0380015077.01.T01:three_prime_UTR 25.0%
! ATAGATAAAAGATACTCTTG+TGG + Chr3:64929895-64929914 MsG0380015077.01.T01:intron 25.0%
! ATTGCAACAAATTACAAATG+AGG - Chr3:64930771-64930790 None:intergenic 25.0%
! CTAGATGAGAAAAAAAAAAC+TGG + Chr3:64931638-64931657 MsG0380015077.01.T01:three_prime_UTR 25.0%
! GAGATTCTAATATCATATCA+TGG + Chr3:64930699-64930718 MsG0380015077.01.T01:intron 25.0%
! GATGAATGATATTAGTTGTA+TGG - Chr3:64929162-64929181 None:intergenic 25.0%
! GTAATGATAGTTATCAATCA+TGG - Chr3:64930025-64930044 None:intergenic 25.0%
! GTTGAAAGATAAAGAAACAT+TGG - Chr3:64929209-64929228 None:intergenic 25.0%
! TAACAGTGATAGAAGTAAAA+GGG + Chr3:64929444-64929463 MsG0380015077.01.T01:CDS 25.0%
! TAGATAAAAGATACTCTTGT+GGG + Chr3:64929896-64929915 MsG0380015077.01.T01:intron 25.0%
! TATATTCACCTAACAACAAT+CGG - Chr3:64930879-64930898 None:intergenic 25.0%
! TTAAATTTGATATTGGACGT+TGG + Chr3:64929521-64929540 MsG0380015077.01.T01:CDS 25.0%
! TTGGTTAGAAATTGGAAATT+AGG - Chr3:64929190-64929209 None:intergenic 25.0%
!! AAGAAACATTGGTTAGAAAT+TGG - Chr3:64929198-64929217 None:intergenic 25.0%
!! AGCCGAAAAAGAAATTTTAA+AGG - Chr3:64930000-64930019 None:intergenic 25.0%
!!! AAATGCTTTTAGGAAAAGTA+TGG + Chr3:64930546-64930565 MsG0380015077.01.T01:intron 25.0%
!!! AAGCTTTTAATTTGAAGTGT+TGG - Chr3:64930062-64930081 None:intergenic 25.0%
!!! AGATACTCGAATCTATTTTT+AGG - Chr3:64929867-64929886 None:intergenic 25.0%
!!! ATTCTGTTTTAAGTATGTGA+GGG - Chr3:64930468-64930487 None:intergenic 25.0%
AACATGAGAATGAGATTTCT+TGG - Chr3:64931242-64931261 None:intergenic 30.0%
CAATTTCATCAGAAAATAGG+TGG - Chr3:64930611-64930630 None:intergenic 30.0%
GAATGATATTAGTTGTATGG+TGG - Chr3:64929159-64929178 None:intergenic 30.0%
GAGAAATGAGATAAAGTGAT+CGG - Chr3:64929137-64929156 None:intergenic 30.0%
GTAACAGTGATAGAAGTAAA+AGG + Chr3:64929443-64929462 MsG0380015077.01.T01:CDS 30.0%
GTTAGAAATTGGAAATTAGG+CGG - Chr3:64929187-64929206 None:intergenic 30.0%
GTTTGTTTATGTGAATGATC+AGG + Chr3:64931259-64931278 MsG0380015077.01.T01:intron 30.0%
TAACACTGTAAGATTGATGA+TGG + Chr3:64929402-64929421 MsG0380015077.01.T01:CDS 30.0%
TTATGAACGAAATTGACCAA+GGG + Chr3:64929813-64929832 MsG0380015077.01.T01:intron 30.0%
TTTATATGCAAGGTCTAGTT+TGG + Chr3:64931187-64931206 MsG0380015077.01.T01:intron 30.0%
TTTATGAACGAAATTGACCA+AGG + Chr3:64929812-64929831 MsG0380015077.01.T01:intron 30.0%
! AACACTGTAAGATTGATGAT+GGG + Chr3:64929403-64929422 MsG0380015077.01.T01:CDS 30.0%
! AGAATTTTGTCATGAATCTC+AGG + Chr3:64930289-64930308 MsG0380015077.01.T01:intron 30.0%
! CATCTCAATCAAATGCTTTT+AGG + Chr3:64930536-64930555 MsG0380015077.01.T01:intron 30.0%
! TTGTAGTCTCTTTGTTTCTT+TGG - Chr3:64929291-64929310 None:intergenic 30.0%
!! CATTCTGTTTTAAGTATGTG+AGG - Chr3:64930469-64930488 None:intergenic 30.0%
!! CTAAAAGCATTTGATTGAGA+TGG - Chr3:64930538-64930557 None:intergenic 30.0%
!! CTCAAGGTTTAATTTTGTCA+TGG + Chr3:64931531-64931550 MsG0380015077.01.T01:three_prime_UTR 30.0%
!! TATTCCTACTTGGTTTTTGA+TGG - Chr3:64931375-64931394 None:intergenic 30.0%
!! TTCTGTTTTAAGTATGTGAG+GGG - Chr3:64930467-64930486 None:intergenic 30.0%
AAAAAACTCACAGGACAAAC+AGG - Chr3:64929709-64929728 None:intergenic 35.0%
AAAAACTCACAGGACAAACA+GGG - Chr3:64929708-64929727 None:intergenic 35.0%
AAAGGAGCAAACAACTACTT+TGG - Chr3:64929982-64930001 None:intergenic 35.0%
AAGCTTGAACTTCCAAATCA+AGG + Chr3:64931410-64931429 MsG0380015077.01.T01:three_prime_UTR 35.0%
AATTTATCTGGTCAAATGCG+CGG + Chr3:64930903-64930922 MsG0380015077.01.T01:intron 35.0%
ACCAAGGGAAAACATATTTG+AGG + Chr3:64929828-64929847 MsG0380015077.01.T01:intron 35.0%
ATATATACTCCTCATGAAGG+AGG + Chr3:64929577-64929596 MsG0380015077.01.T01:CDS 35.0%
ATGAGAATGAGATTTCTTGG+TGG - Chr3:64931239-64931258 None:intergenic 35.0%
CAAGCTATGCATTAGAATCA+TGG - Chr3:64929773-64929792 None:intergenic 35.0%
CTAACAACAATCGGATTTCT+TGG - Chr3:64930870-64930889 None:intergenic 35.0%
CTAGACCTTGCATATAAAGT+TGG - Chr3:64931185-64931204 None:intergenic 35.0%
GAGAATGTACATATCACTCA+TGG - Chr3:64931514-64931533 None:intergenic 35.0%
GAGTGATATGTACATTCTCA+AGG + Chr3:64931515-64931534 MsG0380015077.01.T01:three_prime_UTR 35.0%
GCAATATATACTCCTCATGA+AGG + Chr3:64929574-64929593 MsG0380015077.01.T01:CDS 35.0%
TATATACTCCTCATGAAGGA+GGG + Chr3:64929578-64929597 MsG0380015077.01.T01:CDS 35.0%
TCATTGCTGAATGTGGAAAT+TGG + Chr3:64931020-64931039 MsG0380015077.01.T01:CDS 35.0%
! CAAGAAATCCGATTGTTGTT+AGG + Chr3:64930868-64930887 MsG0380015077.01.T01:intron 35.0%
! TCCTCAAATATGTTTTCCCT+TGG - Chr3:64929832-64929851 None:intergenic 35.0%
!! AGTGTTGGTACATAGTACAT+TGG - Chr3:64930047-64930066 None:intergenic 35.0%
AACACTAAGGCCTAATGTGA+GGG + Chr3:64930997-64931016 MsG0380015077.01.T01:CDS 40.0%
AAGGAATTGTAGTTCAGCCT+TGG - Chr3:64930966-64930985 None:intergenic 40.0%
AATCTGTAATCAACCTCTGG+TGG - Chr3:64930353-64930372 None:intergenic 40.0%
ACAACAATCGGATTTCTTGG+TGG - Chr3:64930867-64930886 None:intergenic 40.0%
AGAAATTGGAAATTAGGCGG+AGG - Chr3:64929184-64929203 None:intergenic 40.0%
ATCTGTAATCAACCTCTGGT+GGG - Chr3:64930352-64930371 None:intergenic 40.0%
ATGGGATTAGGTGACTTCAT+TGG + Chr3:64929487-64929506 MsG0380015077.01.T01:CDS 40.0%
CAACAGTACAACGATACATG+TGG + Chr3:64930115-64930134 MsG0380015077.01.T01:intron 40.0%
CACATGTATCGTTGTACTGT+TGG - Chr3:64930117-64930136 None:intergenic 40.0%
CATGAATCTCAGGCTCATTT+AGG + Chr3:64930299-64930318 MsG0380015077.01.T01:intron 40.0%
CCATCCATCAAAAACCAAGT+AGG + Chr3:64931368-64931387 MsG0380015077.01.T01:three_prime_UTR 40.0%
CTAACATACAGCAACCAACA+AGG + Chr3:64929356-64929375 MsG0380015077.01.T01:CDS 40.0%
CTTCATAGATTATGTCGCAC+TGG + Chr3:64930234-64930253 MsG0380015077.01.T01:intron 40.0%
GTAAAGCATAATCCACACCT+TGG - Chr3:64930426-64930445 None:intergenic 40.0%
GTACATATCACTCATGGTTG+TGG - Chr3:64931508-64931527 None:intergenic 40.0%
TAGGAAAGCAACCAATAGCA+AGG + Chr3:64930318-64930337 MsG0380015077.01.T01:CDS 40.0%
TATCTGCAAGTGCCTTGATT+TGG - Chr3:64931425-64931444 None:intergenic 40.0%
TCCAATCTGTAATCAACCTC+TGG - Chr3:64930356-64930375 None:intergenic 40.0%
TGACTTCATTGGAGGAGATT+TGG + Chr3:64929498-64929517 MsG0380015077.01.T01:CDS 40.0%
TGATCAGGAGAAAGTTTACG+TGG + Chr3:64931274-64931293 MsG0380015077.01.T01:intron 40.0%
TGCTGAATGTGGAAATTGGT+AGG + Chr3:64931024-64931043 MsG0380015077.01.T01:intron 40.0%
TGCTGTATGTTAGAGCATGT+TGG - Chr3:64929349-64929368 None:intergenic 40.0%
TGTTGCAAAACTTGTGCTTG+AGG + Chr3:64931133-64931152 MsG0380015077.01.T01:intron 40.0%
TTGCAGTTAAGCTGTGATAC+TGG - Chr3:64930806-64930825 None:intergenic 40.0%
! ACCAGAGGTTGATTACAGAT+TGG + Chr3:64930352-64930371 MsG0380015077.01.T01:CDS 40.0%
! GAAAATAAAAGGGAGGTGCA+AGG + Chr3:64930646-64930665 MsG0380015077.01.T01:intron 40.0%
! GCGGTACTAAAATGTTGCTT+TGG + Chr3:64930922-64930941 MsG0380015077.01.T01:intron 40.0%
!! CCTACTTGGTTTTTGATGGA+TGG - Chr3:64931371-64931390 None:intergenic 40.0%
!! CTGTAAGATTGATGATGGGA+TGG + Chr3:64929407-64929426 MsG0380015077.01.T01:CDS 40.0%
!! CTTTGGTTCTTGAATGTGTG+AGG - Chr3:64929965-64929984 None:intergenic 40.0%
AAGCCACTCAACGAAATTGC+TGG + Chr3:64931297-64931316 MsG0380015077.01.T01:CDS 45.0%
ACTTTGGTGAGAGTGGTTTC+AGG - Chr3:64929682-64929701 None:intergenic 45.0%
AGGACAAACAGGGTGAACTT+TGG - Chr3:64929698-64929717 None:intergenic 45.0%
AGTCCAGCAATTTCGTTGAG+TGG - Chr3:64931303-64931322 None:intergenic 45.0%
AGTGAAATGCAGCAGTGGAA+TGG + Chr3:64929468-64929487 MsG0380015077.01.T01:CDS 45.0%
CAACACTAAGGCCTAATGTG+AGG + Chr3:64930996-64931015 MsG0380015077.01.T01:CDS 45.0%
CTCACATTAGGCCTTAGTGT+TGG - Chr3:64930998-64931017 None:intergenic 45.0%
GAAAGCAACCAATAGCAAGG+TGG + Chr3:64930321-64930340 MsG0380015077.01.T01:CDS 45.0%
GCATTACCACCAAATGCCAA+AGG + Chr3:64930377-64930396 MsG0380015077.01.T01:CDS 45.0%
GCTATGAAGCTGTTCCTTGT+TGG - Chr3:64929373-64929392 None:intergenic 45.0%
GGATTAGGTGACTTCATTGG+AGG + Chr3:64929490-64929509 MsG0380015077.01.T01:CDS 45.0%
GTACAACGATACATGTGGTG+TGG + Chr3:64930120-64930139 MsG0380015077.01.T01:intron 45.0%
GTGAAATGCAGCAGTGGAAT+GGG + Chr3:64929469-64929488 MsG0380015077.01.T01:CDS 45.0%
TCAGCAATGACCCTCACATT+AGG - Chr3:64931010-64931029 None:intergenic 45.0%
TGTTCCTTAGGTTCTCTCCA+AGG + Chr3:64930946-64930965 MsG0380015077.01.T01:intron 45.0%
TTATCGCGTCTTCAACGTCA+AGG + Chr3:64929616-64929635 MsG0380015077.01.T01:CDS 45.0%
TTTCTTGACCTTACTGCTCG+TGG + Chr3:64929646-64929665 MsG0380015077.01.T01:CDS 45.0%
! ATGTTAGCCTCTGCAAGCTT+AGG + Chr3:64929313-64929332 MsG0380015077.01.T01:CDS 45.0%
! GATTTCTTGGTGGTTTCGTC+AGG - Chr3:64930857-64930876 None:intergenic 45.0%
! GGGAAATACCACCTTGCTAT+TGG - Chr3:64930332-64930351 None:intergenic 45.0%
!! AGATTGATGATGGGATGGAG+AGG + Chr3:64929412-64929431 MsG0380015077.01.T01:CDS 45.0%
!! TGTTGCTTTGGCTGTTCCTT+AGG + Chr3:64930934-64930953 MsG0380015077.01.T01:intron 45.0%
AAGGTGGTATTTCCCACCAG+AGG + Chr3:64930337-64930356 MsG0380015077.01.T01:CDS 50.0%
ACCAAATGCCAAAGGACTGG+TGG + Chr3:64930385-64930404 MsG0380015077.01.T01:CDS 50.0%
ACCACCAAATGCCAAAGGAC+TGG + Chr3:64930382-64930401 MsG0380015077.01.T01:CDS 50.0%
ACCACCAGTCCTTTGGCATT+TGG - Chr3:64930389-64930408 None:intergenic 50.0%
ACCAGTCCTTTGGCATTTGG+TGG - Chr3:64930386-64930405 None:intergenic 50.0%
AGGGTGAACTTTGGTGAGAG+TGG - Chr3:64929689-64929708 None:intergenic 50.0%
CCTTCATACCCTCCTTCATG+AGG - Chr3:64929589-64929608 None:intergenic 50.0%
CTATCAAGCGTCCTGACTAG+TGG - Chr3:64931328-64931347 None:intergenic 50.0%
GGATCATTGAAGCCAAGGTG+TGG + Chr3:64930411-64930430 MsG0380015077.01.T01:CDS 50.0%
GGTGTGGATCATTGAAGCCA+AGG + Chr3:64930406-64930425 MsG0380015077.01.T01:CDS 50.0%
GTGAGGGTCATTGCTGAATG+TGG + Chr3:64931013-64931032 MsG0380015077.01.T01:CDS 50.0%
TCAGCCTTGGAGAGAACCTA+AGG - Chr3:64930953-64930972 None:intergenic 50.0%
TCCACAACCTAAGCTTGCAG+AGG - Chr3:64929323-64929342 None:intergenic 50.0%
TGCAGCAGTGGAATGGGATT+AGG + Chr3:64929475-64929494 MsG0380015077.01.T01:CDS 50.0%
TTGCTCTGCTGCCAACACTA+AGG + Chr3:64930984-64931003 MsG0380015077.01.T01:CDS 50.0%
! CCTCATGAAGGAGGGTATGA+AGG + Chr3:64929586-64929605 MsG0380015077.01.T01:CDS 50.0%
! TCTGCAAGCTTAGGTTGTGG+AGG + Chr3:64929322-64929341 MsG0380015077.01.T01:CDS 50.0%
!! TTAGTGTTGGCAGCAGAGCA+AGG - Chr3:64930985-64931004 None:intergenic 50.0%
AGGGCAGTGAAATGCAGCAG+TGG + Chr3:64929463-64929482 MsG0380015077.01.T01:CDS 55.0%
CACCAAGACCACGAGCAGTA+AGG - Chr3:64929657-64929676 None:intergenic 55.0%
GACCTTACTGCTCGTGGTCT+TGG + Chr3:64929652-64929671 MsG0380015077.01.T01:CDS 55.0%
GATCCACACCACCAGTCCTT+TGG - Chr3:64930396-64930415 None:intergenic 55.0%
TGCTGGACTGACCACTAGTC+AGG + Chr3:64931314-64931333 MsG0380015077.01.T01:CDS 55.0%
! ATGCCAAAGGACTGGTGGTG+TGG + Chr3:64930390-64930409 MsG0380015077.01.T01:CDS 55.0%
! GCCTCTGCAAGCTTAGGTTG+TGG + Chr3:64929319-64929338 MsG0380015077.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 64929133 64931668 64929133 ID=MsG0380015077.01;Name=MsG0380015077.01
Chr3 mRNA 64929133 64931668 64929133 ID=MsG0380015077.01.T01;Parent=MsG0380015077.01;Name=MsG0380015077.01.T01;_AED=0.47;_eAED=0.48;_QI=180|0.66|0.75|1|0.33|0.25|4|324|234
Chr3 exon 64929133 64929717 64929133 ID=MsG0380015077.01.T01:exon:9844;Parent=MsG0380015077.01.T01
Chr3 exon 64930311 64930460 64930311 ID=MsG0380015077.01.T01:exon:9845;Parent=MsG0380015077.01.T01
Chr3 exon 64930956 64931041 64930956 ID=MsG0380015077.01.T01:exon:9846;Parent=MsG0380015077.01.T01
Chr3 exon 64931281 64931668 64931281 ID=MsG0380015077.01.T01:exon:9847;Parent=MsG0380015077.01.T01
Chr3 five_prime_UTR 64929133 64929312 64929133 ID=MsG0380015077.01.T01:five_prime_utr;Parent=MsG0380015077.01.T01
Chr3 CDS 64929313 64929717 64929313 ID=MsG0380015077.01.T01:cds;Parent=MsG0380015077.01.T01
Chr3 CDS 64930311 64930460 64930311 ID=MsG0380015077.01.T01:cds;Parent=MsG0380015077.01.T01
Chr3 CDS 64930956 64931041 64930956 ID=MsG0380015077.01.T01:cds;Parent=MsG0380015077.01.T01
Chr3 CDS 64931281 64931344 64931281 ID=MsG0380015077.01.T01:cds;Parent=MsG0380015077.01.T01
Chr3 three_prime_UTR 64931345 64931668 64931345 ID=MsG0380015077.01.T01:three_prime_utr;Parent=MsG0380015077.01.T01
Gene Sequence

>MsG0380015077.01.T01

ATGTTAGCCTCTGCAAGCTTAGGTTGTGGAGGACCAACATGCTCTAACATACAGCAACCAACAAGGAACAGCTTCATAGCTGAAAATCATAACACTGTAAGATTGATGATGGGATGGAGAGGAAAAGAATGTAACAGTGATAGAAGTAAAAGGGCAGTGAAATGCAGCAGTGGAATGGGATTAGGTGACTTCATTGGAGGAGATTTGGTTAAATTTGATATTGGACGTTGGCTTTCAGATGTTGAAGAACATAAAGCACTTGCAATATATACTCCTCATGAAGGAGGGTATGAAGGACGTTACTTATCGCGTCTTCAACGTCAAGGTTACTATTTTCTTGACCTTACTGCTCGTGGTCTTGGTGATCCTGAAACCACTCTCACCAAAGTTCACCCTGTTTGTCCTGCTCATTTAGGAAAGCAACCAATAGCAAGGTGGTATTTCCCACCAGAGGTTGATTACAGATTGGAAGCATTACCACCAAATGCCAAAGGACTGGTGGTGTGGATCATTGAAGCCAAGGTGTGGATTATGCTTTACTTTTATTACATGAAAGTTCTCTCCAAGGCTGAACTACAATTCCTTGCTCTGCTGCCAACACTAAGGCCTAATGTGAGGGTCATTGCTGAATGTGGAAATTGGAGAAAGTTTACGTGGAAGCCACTCAACGAAATTGCTGGACTGACCACTAGTCAGGACGCTTGA

Protein sequence

>MsG0380015077.01.T01

MLASASLGCGGPTCSNIQQPTRNSFIAENHNTVRLMMGWRGKECNSDRSKRAVKCSSGMGLGDFIGGDLVKFDIGRWLSDVEEHKALAIYTPHEGGYEGRYLSRLQRQGYYFLDLTARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVWIMLYFYYMKVLSKAELQFLALLPTLRPNVRVIAECGNWRKFTWKPLNEIAGLTTSQDA*