AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024371.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024371.01.T01 MTR_5g010010 93.805 113 7 0 10 122 114 226 1.22e-72 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024371.01.T01 AT1G63970 77.586 116 26 0 10 125 112 227 6.40e-62 189
MsG0580024371.01.T01 AT1G63970 86.957 46 6 0 10 55 112 157 2.19e-22 86.7

Find 33 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTCAACTTTGGTAACTTT+TGG 0.182232 5:-3966442 MsG0580024371.01.T01:three_prime_UTR
TTGAGTAGACATGTTTATAT+TGG 0.279719 5:-3966540 MsG0580024371.01.T01:three_prime_UTR
CGCTTCTGTGGTAAATATAA+AGG 0.303097 5:-3966712 MsG0580024371.01.T01:CDS
ACTAGAATGGTAGAAAATTC+TGG 0.334061 5:+3966389 None:intergenic
CATGAGGCAGGTTATGATAT+TGG 0.350566 5:-3966828 MsG0580024371.01.T01:CDS
AACACGACACTCCACAAATT+AGG 0.366070 5:-3969264 MsG0580024371.01.T01:intron
GCTTTAGGTCTTCCTGATAT+AGG 0.382227 5:-3968775 MsG0580024371.01.T01:CDS
GAAGAAATGACAGTGGAATC+TGG 0.388485 5:-3966617 MsG0580024371.01.T01:three_prime_UTR
TCCTTGTGTGGGCTTAGTTT+CGG 0.392429 5:+3966774 None:intergenic
TTTAATGCTTATGTCAACTT+TGG 0.417588 5:-3966452 MsG0580024371.01.T01:three_prime_UTR
GTGGAAGGGTTGTGATTCTT+CGG 0.447373 5:-3968725 MsG0580024371.01.T01:CDS
ACAAAATCTTATAGATTGTC+CGG 0.448823 5:-3966490 MsG0580024371.01.T01:three_prime_UTR
AGAATATACTCACAGATTCA+TGG 0.463953 5:+3968695 None:intergenic
CATGAAAAGGTTGATAGCCT+TGG 0.468863 5:-3966681 MsG0580024371.01.T01:CDS
CCCACACAAGGATGCTATCA+AGG 0.475088 5:-3966763 MsG0580024371.01.T01:CDS
GCCTTGATAGCATCCTTGTG+TGG 0.485497 5:+3966762 None:intergenic
TCCAAGCAGTGCAGATAAGT+TGG 0.486196 5:+3966740 None:intergenic
TTCCACTTAGGATCAGAATC+AGG 0.496430 5:+3968742 None:intergenic
CCTTGATAGCATCCTTGTGT+GGG 0.507271 5:+3966763 None:intergenic
GCCAACTTATCTGCACTGCT+TGG 0.513880 5:-3966741 MsG0580024371.01.T01:CDS
ACCGGAACACACCTAATTTG+TGG 0.519178 5:+3969253 None:intergenic
TTCCTGATTCTGATCCTAAG+TGG 0.534340 5:-3968744 MsG0580024371.01.T01:CDS
TGGAATCTGGAAATATTATG+AGG 0.540881 5:-3966604 MsG0580024371.01.T01:three_prime_UTR
GTCAGACTTATGCATGAGGC+AGG 0.542152 5:-3966840 MsG0580024371.01.T01:CDS
GAATCACAACCCTTCCACTT+AGG 0.553850 5:+3968730 None:intergenic
TGATTCTGATCCTAAGTGGA+AGG 0.553947 5:-3968740 MsG0580024371.01.T01:CDS
GCTTGGAGTTGACGCTTCTG+TGG 0.600936 5:-3966724 MsG0580024371.01.T01:CDS
GGATGTTCTGCTTCACTGCG+TGG 0.605577 5:-3968815 MsG0580024371.01.T01:CDS
GCCGAAACTAAGCCCACACA+AGG 0.626457 5:-3966775 MsG0580024371.01.T01:CDS
ATGCAACATTGATACTTCAG+AGG 0.627600 5:-3966797 MsG0580024371.01.T01:CDS
TTCTAATGAAGAAATGACAG+TGG 0.630264 5:-3966624 MsG0580024371.01.T01:exon
GATTCTGATCCTAAGTGGAA+GGG 0.630398 5:-3968739 MsG0580024371.01.T01:CDS
ACAGGTCAGACTTATGCATG+AGG 0.696663 5:-3966844 MsG0580024371.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATTACTGAGTTAAAA+GGG - Chr5:3967467-3967486 MsG0580024371.01.T01:intron 15.0%
!! AATATGTTATGATTTATTAC+AGG - Chr5:3968804-3968823 MsG0580024371.01.T01:CDS 15.0%
!! AATTTAGGGAATATATTAAT+AGG - Chr5:3967091-3967110 MsG0580024371.01.T01:intron 15.0%
!! CAAAATTAATACAATAAAAG+AGG + Chr5:3968620-3968639 None:intergenic 15.0%
!!! ATTTTTCATTCTTCTAATTA+GGG - Chr5:3967378-3967397 MsG0580024371.01.T01:intron 15.0%
!!! CTCTTTTATTGTATTAATTT+TGG - Chr5:3968618-3968637 MsG0580024371.01.T01:intron 15.0%
!!! TATCTATACTTGATATTTTT+AGG - Chr5:3968773-3968792 MsG0580024371.01.T01:CDS 15.0%
!!! TATTTTTCATTCTTCTAATT+AGG - Chr5:3967377-3967396 MsG0580024371.01.T01:intron 15.0%
!!! TTCCTTGTAAAAAAATTTTT+CGG - Chr5:3968022-3968041 MsG0580024371.01.T01:intron 15.0%
!!! TTCTTTTTTATGTAGATATA+TGG - Chr5:3968078-3968097 MsG0580024371.01.T01:intron 15.0%
!! AAAATGAGTAAATACTCAAT+TGG + Chr5:3966785-3966804 None:intergenic 20.0%
!! AAACCAATCAGTTTAAATAT+GGG + Chr5:3967905-3967924 None:intergenic 20.0%
!! AATATATGCCTGTTTAAATA+AGG + Chr5:3967936-3967955 None:intergenic 20.0%
!! AATTGAGAAAATAAAGTAGA+AGG + Chr5:3967010-3967029 None:intergenic 20.0%
!! ATATACCTTGTATGTATATA+AGG - Chr5:3967601-3967620 MsG0580024371.01.T01:intron 20.0%
!! ATATATGCCTGTTTAAATAA+GGG + Chr5:3967935-3967954 None:intergenic 20.0%
!! ATTGAAATACAGTATGATTT+AGG - Chr5:3967027-3967046 MsG0580024371.01.T01:intron 20.0%
!! GAAATTATTACTGAGTTAAA+AGG - Chr5:3967466-3967485 MsG0580024371.01.T01:intron 20.0%
!! TATACCTTGTATGTATATAA+GGG - Chr5:3967602-3967621 MsG0580024371.01.T01:intron 20.0%
!!! AAAAAATAGCAAAGTTTGTT+TGG + Chr5:3968537-3968556 None:intergenic 20.0%
!!! GTATCTGAATTGTTTAAAAT+AGG + Chr5:3968331-3968350 None:intergenic 20.0%
!!! TACCGAAAAATTTTTTTACA+AGG + Chr5:3968027-3968046 None:intergenic 20.0%
!!! TCTAATGTTGTTTGAATTTA+GGG - Chr5:3967077-3967096 MsG0580024371.01.T01:intron 20.0%
!!! TCTTTTTGTTTGGTATAATA+CGG + Chr5:3967799-3967818 None:intergenic 20.0%
!!! TTCTAATGTTGTTTGAATTT+AGG - Chr5:3967076-3967095 MsG0580024371.01.T01:intron 20.0%
!!! TTTTTCATTCTTCTAATTAG+GGG - Chr5:3967379-3967398 MsG0580024371.01.T01:intron 20.0%
! AAATAATGACATGAGTTAAC+AGG - Chr5:3967529-3967548 MsG0580024371.01.T01:intron 25.0%
! ACAAAATCTTATAGATTGTC+CGG - Chr5:3969176-3969195 MsG0580024371.01.T01:intron 25.0%
! ACAGAACAAACAAATCATTA+CGG + Chr5:3967131-3967150 None:intergenic 25.0%
! ACTTTATTATTGAACGAGTT+TGG - Chr5:3967420-3967439 MsG0580024371.01.T01:intron 25.0%
! ATACATACAAGGTATATGAT+TGG + Chr5:3967598-3967617 None:intergenic 25.0%
! CAAACCAATCAGTTTAAATA+TGG + Chr5:3967906-3967925 None:intergenic 25.0%
! CAAGATAGTTTATGAGAAAA+CGG + Chr5:3966655-3966674 None:intergenic 25.0%
! CCATGAATAATTCATTGAAA+TGG + Chr5:3967168-3967187 None:intergenic 25.0%
! CCATTTCAATGAATTATTCA+TGG - Chr5:3967165-3967184 MsG0580024371.01.T01:intron 25.0%
! GATGGTTGTACAATTATATT+TGG - Chr5:3968706-3968725 MsG0580024371.01.T01:intron 25.0%
! TAAAAAATAAGCCAATCCAA+TGG - Chr5:3966733-3966752 MsG0580024371.01.T01:CDS 25.0%
! TTGAGTAGACATGTTTATAT+TGG - Chr5:3969126-3969145 MsG0580024371.01.T01:intron 25.0%
! TTTAATAACTGCTAAACACA+TGG + Chr5:3968656-3968675 None:intergenic 25.0%
! TTTAATGCTTATGTCAACTT+TGG - Chr5:3969214-3969233 MsG0580024371.01.T01:intron 25.0%
!! AAAACATCTCTCTTTTTGTT+TGG + Chr5:3967809-3967828 None:intergenic 25.0%
!! ATGATGATGAAATATGAACA+GGG - Chr5:3966830-3966849 MsG0580024371.01.T01:CDS 25.0%
!!! AGCTGTGTTCATTTTTTTAA+AGG - Chr5:3967629-3967648 MsG0580024371.01.T01:intron 25.0%
!!! GCTGTGTTCATTTTTTTAAA+GGG - Chr5:3967630-3967649 MsG0580024371.01.T01:intron 25.0%
!!! GTGAATAAAAGCTTTTTCTT+CGG + Chr5:3968276-3968295 None:intergenic 25.0%
!!! TGTTCATTTTTTTAAAGGGA+CGG - Chr5:3967634-3967653 MsG0580024371.01.T01:intron 25.0%
!!! TTTATTTTCATAAGCTGTTC+TGG - Chr5:3966704-3966723 MsG0580024371.01.T01:CDS 25.0%
AAAAGTAGAGAATGAGTTCA+AGG - Chr5:3968415-3968434 MsG0580024371.01.T01:intron 30.0%
AAAGGCAAAAACTCATGAAA+AGG - Chr5:3968972-3968991 MsG0580024371.01.T01:intron 30.0%
AAAGTATAAGCATGATAGGA+AGG - Chr5:3967247-3967266 MsG0580024371.01.T01:intron 30.0%
AAATCATTACGGTGAACATT+TGG + Chr5:3967120-3967139 None:intergenic 30.0%
AGAATATACTCACAGATTCA+TGG + Chr5:3966974-3966993 None:intergenic 30.0%
AGTAAAACATGCACATTAGT+AGG + Chr5:3968001-3968020 None:intergenic 30.0%
ATGCAGTGTTAGAACTTAAA+TGG - Chr5:3967219-3967238 MsG0580024371.01.T01:intron 30.0%
ATTACTGAGTTAAAAGGGTA+AGG - Chr5:3967472-3967491 MsG0580024371.01.T01:intron 30.0%
CATACATATGTGAGTTCAAA+AGG - Chr5:3967967-3967986 MsG0580024371.01.T01:intron 30.0%
CTGAAAACACAATTACACTA+AGG + Chr5:3967053-3967072 None:intergenic 30.0%
GATTCCCTTATATACATACA+AGG + Chr5:3967609-3967628 None:intergenic 30.0%
GTATCAGCTTAAATTGATAG+AGG + Chr5:3968389-3968408 None:intergenic 30.0%
TAACATTTCGTGTGGTATTA+AGG + Chr5:3967724-3967743 None:intergenic 30.0%
TACCACACGAAATGTTAAAA+TGG - Chr5:3967727-3967746 MsG0580024371.01.T01:intron 30.0%
TGAAAAATAGATGTAGCAGA+TGG + Chr5:3967366-3967385 None:intergenic 30.0%
TGCTAAAGTATAAGCATGAT+AGG - Chr5:3967243-3967262 MsG0580024371.01.T01:intron 30.0%
TGGAATCTGGAAATATTATG+AGG - Chr5:3969062-3969081 MsG0580024371.01.T01:intron 30.0%
TGTCACAAACTAACATACAT+AGG - Chr5:3968141-3968160 MsG0580024371.01.T01:intron 30.0%
TTCATCAAACCCATTTAATC+CGG - Chr5:3968118-3968137 MsG0580024371.01.T01:intron 30.0%
TTCGGATTGTTAGAATAAGA+TGG - Chr5:3967316-3967335 MsG0580024371.01.T01:intron 30.0%
TTCTAATGAAGAAATGACAG+TGG - Chr5:3969042-3969061 MsG0580024371.01.T01:intron 30.0%
! ACCGATGTCGATAATATTTT+GGG + Chr5:3966499-3966518 None:intergenic 30.0%
! CATGATGATGAAATATGAAC+AGG - Chr5:3966829-3966848 MsG0580024371.01.T01:CDS 30.0%
! GATTTTCTTTTGACGTATGA+TGG - Chr5:3968688-3968707 MsG0580024371.01.T01:intron 30.0%
! GCATAATCCCTTATTTAAAC+AGG - Chr5:3967925-3967944 MsG0580024371.01.T01:intron 30.0%
!! ATGTCAACTTTGGTAACTTT+TGG - Chr5:3969224-3969243 MsG0580024371.01.T01:intron 30.0%
!! TGAACTCATTCTCTACTTTT+TGG + Chr5:3968415-3968434 None:intergenic 30.0%
!! TGTCAACTTTGGTAACTTTT+GGG - Chr5:3969225-3969244 MsG0580024371.01.T01:intron 30.0%
!!! GTTACTGAAAGTGTTTTCTT+AGG - Chr5:3968728-3968747 MsG0580024371.01.T01:CDS 30.0%
!!! GTTCATTTTTTTAAAGGGAC+GGG - Chr5:3967635-3967654 MsG0580024371.01.T01:intron 30.0%
ACAAGGTCAGCTATTTAACT+GGG - Chr5:3968167-3968186 MsG0580024371.01.T01:intron 35.0%
AGGCCCATATTTAAACTGAT+TGG - Chr5:3967899-3967918 MsG0580024371.01.T01:intron 35.0%
ATAAAAGAGGAGTCACTGTT+AGG + Chr5:3968607-3968626 None:intergenic 35.0%
ATGAAGCACAAACATAGACA+CGG + Chr5:3966536-3966555 None:intergenic 35.0%
ATGCAACATTGATACTTCAG+AGG - Chr5:3968869-3968888 MsG0580024371.01.T01:intron 35.0%
CCCCAAAATATTATCGACAT+CGG - Chr5:3966495-3966514 MsG0580024371.01.T01:three_prime_UTR 35.0%
CGCTTCTGTGGTAAATATAA+AGG - Chr5:3968954-3968973 MsG0580024371.01.T01:intron 35.0%
CTAAACACATGGTAAATGCA+GGG + Chr5:3968645-3968664 None:intergenic 35.0%
CTAACATACATAGGATCACA+AGG - Chr5:3968150-3968169 MsG0580024371.01.T01:intron 35.0%
CTCAATTGGTATAGAGTTGT+TGG + Chr5:3966771-3966790 None:intergenic 35.0%
CTTCGGAAATGACATATTTG+AGG + Chr5:3968259-3968278 None:intergenic 35.0%
GGAAAAATCTGTCCTATATC+AGG + Chr5:3966906-3966925 None:intergenic 35.0%
GGAAAGACATTGTCATTGTT+CGG - Chr5:3967298-3967317 MsG0580024371.01.T01:intron 35.0%
TATCAGTCAAGTGTGTAACA+GGG - Chr5:3968491-3968510 MsG0580024371.01.T01:intron 35.0%
TCTCACTTCTGAATACTGTT+AGG + Chr5:3968463-3968482 None:intergenic 35.0%
TGTATCATGTGTGTATGTTG+AGG + Chr5:3968236-3968255 None:intergenic 35.0%
TTTGTGACACCGGATTAAAT+GGG + Chr5:3968130-3968149 None:intergenic 35.0%
! CACCGATGTCGATAATATTT+TGG + Chr5:3966500-3966519 None:intergenic 35.0%
! CCGATGTCGATAATATTTTG+GGG + Chr5:3966498-3966517 None:intergenic 35.0%
! TAAAAACACTGATTAGCAGC+CGG + Chr5:3969198-3969217 None:intergenic 35.0%
! TGCTATACTTCTTTTCTCCA+AGG + Chr5:3969005-3969024 None:intergenic 35.0%
!! CACCATTTTAACATTTCGTG+TGG + Chr5:3967732-3967751 None:intergenic 35.0%
!! TGTATGTTAGTTTGTGACAC+CGG + Chr5:3968140-3968159 None:intergenic 35.0%
AACACGACACTCCACAAATT+AGG - Chr5:3966402-3966421 MsG0580024371.01.T01:three_prime_UTR 40.0%
AGAGTTGTTGGCAAGATCTT+GGG + Chr5:3966759-3966778 None:intergenic 40.0%
ATTAGCGCTTTGGTTAACAG+TGG - Chr5:3967506-3967525 MsG0580024371.01.T01:intron 40.0%
CACAAGGTCAGCTATTTAAC+TGG - Chr5:3968166-3968185 MsG0580024371.01.T01:intron 40.0%
CATATGTGAGTTCAAAAGGC+CGG - Chr5:3967971-3967990 MsG0580024371.01.T01:intron 40.0%
CATGAGGCAGGTTATGATAT+TGG - Chr5:3968838-3968857 MsG0580024371.01.T01:intron 40.0%
CATTCTTCTAATTAGGGGCA+TGG - Chr5:3967384-3967403 MsG0580024371.01.T01:intron 40.0%
CTATCAGTCAAGTGTGTAAC+AGG - Chr5:3968490-3968509 MsG0580024371.01.T01:intron 40.0%
CTTAGAAGAGATTAGCGCTT+TGG - Chr5:3967496-3967515 MsG0580024371.01.T01:intron 40.0%
GAAGAAATGACAGTGGAATC+TGG - Chr5:3969049-3969068 MsG0580024371.01.T01:intron 40.0%
GATTCTGATCCTAAGTGGAA+GGG - Chr5:3966927-3966946 MsG0580024371.01.T01:intron 40.0%
GCTAAACACATGGTAAATGC+AGG + Chr5:3968646-3968665 None:intergenic 40.0%
GTAATCATATGTGCCAGTGT+AGG + Chr5:3966457-3966476 None:intergenic 40.0%
GTATGTTGAGGTGAGTACAA+GGG + Chr5:3968224-3968243 None:intergenic 40.0%
GTTTGTGACACCGGATTAAA+TGG + Chr5:3968131-3968150 None:intergenic 40.0%
TAGAGTTGTTGGCAAGATCT+TGG + Chr5:3966760-3966779 None:intergenic 40.0%
TCCACAAATTAGGTGTGTTC+CGG - Chr5:3966412-3966431 MsG0580024371.01.T01:three_prime_UTR 40.0%
TGATTCTGATCCTAAGTGGA+AGG - Chr5:3966926-3966945 MsG0580024371.01.T01:intron 40.0%
TGTATGTTGAGGTGAGTACA+AGG + Chr5:3968225-3968244 None:intergenic 40.0%
TTCCACTTAGGATCAGAATC+AGG + Chr5:3966927-3966946 None:intergenic 40.0%
TTCCTGATTCTGATCCTAAG+TGG - Chr5:3966922-3966941 MsG0580024371.01.T01:intron 40.0%
! GCTTTAGGTCTTCCTGATAT+AGG - Chr5:3966891-3966910 MsG0580024371.01.T01:intron 40.0%
! GTCTATTCGGTTCTAACTGA+GGG + Chr5:3967837-3967856 None:intergenic 40.0%
! TCTATTCGGTTCTAACTGAG+GGG + Chr5:3967836-3967855 None:intergenic 40.0%
!! CATGAAAAGGTTGATAGCCT+TGG - Chr5:3968985-3969004 MsG0580024371.01.T01:intron 40.0%
!! CGTGGTTGATGCAATTTTAG+GGG - Chr5:3966869-3966888 MsG0580024371.01.T01:intron 40.0%
!! GATGCAATTTTAGGGGCTTT+AGG - Chr5:3966876-3966895 MsG0580024371.01.T01:intron 40.0%
!! GCGTGGTTGATGCAATTTTA+GGG - Chr5:3966868-3966887 MsG0580024371.01.T01:intron 40.0%
!! TGCGTGGTTGATGCAATTTT+AGG - Chr5:3966867-3966886 MsG0580024371.01.T01:intron 40.0%
AAATATGGGCCTATGCTGAC+TGG + Chr5:3967891-3967910 None:intergenic 45.0%
AAGATCTTGGGCCATTGGAT+TGG + Chr5:3966747-3966766 None:intergenic 45.0%
AATTAGGTGTGTTCCGGTGT+CGG - Chr5:3966418-3966437 MsG0580024371.01.T01:three_prime_UTR 45.0%
ACAAACATAGACACGGACAC+GGG + Chr5:3966529-3966548 None:intergenic 45.0%
ACAAGGGCTAACGGTTGTTT+GGG + Chr5:3968208-3968227 None:intergenic 45.0%
ACAGGTCAGACTTATGCATG+AGG - Chr5:3968822-3968841 MsG0580024371.01.T01:intron 45.0%
ACCGGAACACACCTAATTTG+TGG + Chr5:3966416-3966435 None:intergenic 45.0%
AGAACCGAATAGACCTGTAG+AGG - Chr5:3967843-3967862 MsG0580024371.01.T01:intron 45.0%
ATGCACATTAGTAGGCAGAC+CGG + Chr5:3967993-3968012 None:intergenic 45.0%
CACAAACATAGACACGGACA+CGG + Chr5:3966530-3966549 None:intergenic 45.0%
GAATCACAACCCTTCCACTT+AGG + Chr5:3966939-3966958 None:intergenic 45.0%
GTGGAAGGGTTGTGATTCTT+CGG - Chr5:3966941-3966960 MsG0580024371.01.T01:intron 45.0%
TACAAGGGCTAACGGTTGTT+TGG + Chr5:3968209-3968228 None:intergenic 45.0%
TCCAAGCAGTGCAGATAAGT+TGG + Chr5:3968929-3968948 None:intergenic 45.0%
TCCTTGTGTGGGCTTAGTTT+CGG + Chr5:3968895-3968914 None:intergenic 45.0%
! CCTTGATAGCATCCTTGTGT+GGG + Chr5:3968906-3968925 None:intergenic 45.0%
! GAAGGTATGCCTTGCAATCA+GGG - Chr5:3967265-3967284 MsG0580024371.01.T01:intron 45.0%
! GGTCTATTCGGTTCTAACTG+AGG + Chr5:3967838-3967857 None:intergenic 45.0%
ACCGAATAGACCTGTAGAGG+CGG - Chr5:3967846-3967865 MsG0580024371.01.T01:intron 50.0%
CCCACACAAGGATGCTATCA+AGG - Chr5:3968903-3968922 MsG0580024371.01.T01:intron 50.0%
GAGGTGAGTACAAGGGCTAA+CGG + Chr5:3968217-3968236 None:intergenic 50.0%
GCCAACTTATCTGCACTGCT+TGG - Chr5:3968925-3968944 MsG0580024371.01.T01:intron 50.0%
GTCAGACTTATGCATGAGGC+AGG - Chr5:3968826-3968845 MsG0580024371.01.T01:intron 50.0%
TGCAATCAGGGACAGTGGAA+TGG - Chr5:3967277-3967296 MsG0580024371.01.T01:intron 50.0%
TTAAAGGGACGGGAGAAGAG+AGG - Chr5:3967645-3967664 MsG0580024371.01.T01:intron 50.0%
TTCCACTGTCCCTGATTGCA+AGG + Chr5:3967277-3967296 None:intergenic 50.0%
TTGGCAAGATCTTGGGCCAT+TGG + Chr5:3966752-3966771 None:intergenic 50.0%
! GCCTTGATAGCATCCTTGTG+TGG + Chr5:3968907-3968926 None:intergenic 50.0%
! GGAAGGTATGCCTTGCAATC+AGG - Chr5:3967264-3967283 MsG0580024371.01.T01:intron 50.0%
ACACGCTTCGCTTCCTACAC+TGG - Chr5:3966441-3966460 MsG0580024371.01.T01:three_prime_UTR 55.0%
CCCGCCTCTACAGGTCTATT+CGG + Chr5:3967850-3967869 None:intergenic 55.0%
CCGAATAGACCTGTAGAGGC+GGG - Chr5:3967847-3967866 MsG0580024371.01.T01:intron 55.0%
GCCGAAACTAAGCCCACACA+AGG - Chr5:3968891-3968910 MsG0580024371.01.T01:intron 55.0%
GCTTGGAGTTGACGCTTCTG+TGG - Chr5:3968942-3968961 MsG0580024371.01.T01:intron 55.0%
GGATGTTCTGCTTCACTGCG+TGG - Chr5:3966851-3966870 MsG0580024371.01.T01:intron 55.0%
GTATGCATACCCGCCTCTAC+AGG + Chr5:3967859-3967878 None:intergenic 55.0%
TGCCTTGCAATCAGGGACAG+TGG - Chr5:3967272-3967291 MsG0580024371.01.T01:intron 55.0%
AAGCGAAGCGTGTCCGACAC+CGG + Chr5:3966434-3966453 None:intergenic 60.0%
AGGGACGGGAGAAGAGAGGA+AGG - Chr5:3967649-3967668 MsG0580024371.01.T01:intron 60.0%
CAGCTCGCACCAGTCAGCAT+AGG - Chr5:3967879-3967898 MsG0580024371.01.T01:intron 60.0%
! CTATGCTGACTGGTGCGAGC+TGG + Chr5:3967881-3967900 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 3966398 3969290 3966398 ID=MsG0580024371.01;Name=MsG0580024371.01
Chr5 mRNA 3966398 3969290 3966398 ID=MsG0580024371.01.T01;Parent=MsG0580024371.01;Name=MsG0580024371.01.T01;_AED=0.47;_eAED=0.49;_QI=0|0.5|0.66|1|1|1|3|243|125
Chr5 exon 3966398 3966862 3966398 ID=MsG0580024371.01.T01:exon:2162;Parent=MsG0580024371.01.T01
Chr5 exon 3968708 3968837 3968708 ID=MsG0580024371.01.T01:exon:2161;Parent=MsG0580024371.01.T01
Chr5 exon 3969265 3969290 3969265 ID=MsG0580024371.01.T01:exon:2160;Parent=MsG0580024371.01.T01
Chr5 CDS 3969265 3969290 3969265 ID=MsG0580024371.01.T01:cds;Parent=MsG0580024371.01.T01
Chr5 CDS 3968708 3968837 3968708 ID=MsG0580024371.01.T01:cds;Parent=MsG0580024371.01.T01
Chr5 CDS 3966641 3966862 3966641 ID=MsG0580024371.01.T01:cds;Parent=MsG0580024371.01.T01
Chr5 three_prime_UTR 3966398 3966640 3966398 ID=MsG0580024371.01.T01:three_prime_utr;Parent=MsG0580024371.01.T01
Gene Sequence

>MsG0580024371.01.T01

ATGAAACACGACACTCCACAAATTAGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGACAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGATTCTTCGGTGTTTGTCCATGAATCTGTCAGACTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAGAGGCCGAAACTAAGCCCACACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGATAGCCTTGGAGAAAAGAAGTATAGCAGCTCACACAGTTGTTTCTTCTAA

Protein sequence

>MsG0580024371.01.T01

MKHDTPQIRDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGEKKYSSSHSCFF*