AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046675.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046675.01.T01 MTR_4g111975 98.566 279 4 0 7 285 1 279 0.0 568
MsG0880046675.01.T01 MTR_8g063600 44.444 288 97 12 14 284 10 251 2.44e-64 205
MsG0880046675.01.T01 MTR_3g462790 48.804 209 71 5 14 217 43 220 1.55e-55 183
MsG0880046675.01.T01 MTR_5g069710 48.039 204 69 4 14 212 29 200 6.72e-55 181
MsG0880046675.01.T01 MTR_7g067080 45.854 205 84 3 9 212 30 208 5.66e-53 176
MsG0880046675.01.T01 MTR_1g111830 45.500 200 79 3 14 213 24 193 8.47e-53 174
MsG0880046675.01.T01 MTR_8g063870 37.329 292 117 10 7 279 1 245 9.65e-48 162
MsG0880046675.01.T01 MTR_5g081860 40.952 210 84 5 14 218 27 201 1.28e-46 159
MsG0880046675.01.T01 MTR_1g033620 66.142 127 35 4 159 284 20 139 3.08e-43 149
MsG0880046675.01.T01 MTR_4g100630 57.018 114 46 2 107 217 55 168 1.16e-34 129
MsG0880046675.01.T01 MTR_6g092540 73.239 71 19 0 138 208 91 161 3.85e-33 124
MsG0880046675.01.T01 MTR_8g101650 73.239 71 18 1 138 208 99 168 2.22e-32 122
MsG0880046675.01.T01 MTR_2g100930 60.638 94 30 1 115 208 87 173 8.32e-32 122
MsG0880046675.01.T01 MTR_5g037080 69.231 78 24 0 133 210 91 168 5.48e-27 108
MsG0880046675.01.T01 MTR_1g033600 43.243 148 64 4 14 161 12 139 2.03e-26 102
MsG0880046675.01.T01 MTR_0036s0260 67.164 67 22 0 144 210 28 94 1.60e-25 101
MsG0880046675.01.T01 MTR_4g107230 68.354 79 25 0 132 210 72 150 3.07e-25 103
MsG0880046675.01.T01 MTR_2g090305 65.672 67 23 0 144 210 28 94 1.85e-23 95.9
MsG0880046675.01.T01 MTR_5g088010 54.430 79 32 2 140 215 56 133 7.18e-23 95.9
MsG0880046675.01.T01 MTR_5g027570 45.000 100 49 2 140 233 88 187 1.11e-22 94.7
MsG0880046675.01.T01 MTR_3g104370 56.410 78 31 2 134 208 81 158 1.79e-22 94.4
MsG0880046675.01.T01 MTR_4g015130 67.797 59 19 0 154 212 3 61 2.93e-22 89.4
MsG0880046675.01.T01 MTR_5g088060 48.485 99 44 4 123 216 250 346 1.11e-20 92.4
MsG0880046675.01.T01 MTR_5g488160 48.485 99 44 4 123 216 250 346 1.11e-20 92.4
MsG0880046675.01.T01 MTR_5g027550 46.067 89 45 1 133 218 66 154 3.21e-18 82.4
MsG0880046675.01.T01 MTR_5g075760 32.338 201 93 10 14 211 13 173 2.30e-17 79.7
MsG0880046675.01.T01 MTR_1g048660 50.000 64 32 0 145 208 13 76 2.36e-17 76.3
MsG0880046675.01.T01 MTR_1g022290 46.667 75 36 2 7 81 1 71 9.47e-17 74.7
MsG0880046675.01.T01 MTR_3g111880 45.333 75 38 1 9 83 2 73 2.61e-16 73.6
MsG0880046675.01.T01 MTR_5g075790 32.338 201 92 10 14 211 22 181 3.19e-16 77.0
MsG0880046675.01.T01 MTR_6g004250 45.946 74 37 1 8 81 4 74 4.17e-14 67.0
MsG0880046675.01.T01 MTR_1g083180 49.296 71 32 2 146 213 63 132 1.26e-13 68.6
MsG0880046675.01.T01 MTR_3g116720 41.176 68 37 1 12 79 14 78 1.07e-12 63.2
MsG0880046675.01.T01 MTR_8g072990 47.170 53 28 0 141 193 97 149 1.69e-11 63.5
MsG0880046675.01.T01 MTR_6g043490 38.272 81 41 2 141 217 104 179 2.66e-11 62.8
MsG0880046675.01.T01 MTR_3g013440 43.590 78 39 3 5 81 2 75 2.86e-11 59.7
MsG0880046675.01.T01 MTR_6g043480 47.170 53 28 0 141 193 104 156 3.07e-11 62.8
MsG0880046675.01.T01 MTR_3g070110 45.946 74 33 2 146 212 97 170 4.62e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046675.01.T01 AT1G49010 57.483 294 90 8 7 285 1 274 1.35e-94 283
MsG0880046675.01.T01 AT5G08520 49.196 311 110 11 9 298 7 290 8.43e-80 245
MsG0880046675.01.T01 AT2G38090 45.050 202 93 2 11 212 26 209 1.89e-56 185
MsG0880046675.01.T01 AT5G58900 46.512 215 84 6 8 218 28 215 6.83e-54 178
MsG0880046675.01.T01 AT5G01200 45.098 204 92 3 12 212 28 214 1.31e-50 169
MsG0880046675.01.T01 AT5G23650 44.643 224 96 5 9 230 8 205 4.12e-50 170
MsG0880046675.01.T01 AT5G04760 41.553 219 91 4 14 232 6 187 1.16e-47 160
MsG0880046675.01.T01 AT3G11280 44.724 199 74 3 14 212 33 195 1.59e-47 161
MsG0880046675.01.T01 AT3G11280 44.724 199 74 3 14 212 33 195 1.59e-47 161
MsG0880046675.01.T01 AT5G05790 36.667 270 125 6 7 260 24 263 5.89e-47 160
MsG0880046675.01.T01 AT5G05790 36.667 270 125 6 7 260 24 263 5.89e-47 160
MsG0880046675.01.T01 AT5G47390 57.798 109 43 1 118 223 67 175 1.21e-34 130
MsG0880046675.01.T01 AT3G10580 36.327 245 100 10 7 251 1 189 2.97e-33 123
MsG0880046675.01.T01 AT3G10580 36.327 245 100 10 7 251 1 189 4.81e-33 124
MsG0880046675.01.T01 AT5G61620 49.153 118 49 2 118 226 84 199 4.01e-30 117
MsG0880046675.01.T01 AT5G56840 56.818 88 37 1 127 213 74 161 6.28e-29 111
MsG0880046675.01.T01 AT4G09450 35.683 227 92 7 14 235 7 184 3.36e-28 108
MsG0880046675.01.T01 AT1G70000 61.458 96 27 1 114 209 78 163 6.21e-27 107
MsG0880046675.01.T01 AT1G70000 61.458 96 27 1 114 209 78 163 6.21e-27 107
MsG0880046675.01.T01 AT1G74840 48.611 144 67 4 122 260 74 215 4.29e-26 104
MsG0880046675.01.T01 AT1G74840 48.611 144 67 4 122 260 74 215 5.23e-26 104
MsG0880046675.01.T01 AT3G16350 77.966 59 13 0 133 191 126 184 1.25e-25 105
MsG0880046675.01.T01 AT1G19000 55.556 108 45 2 134 241 92 196 9.94e-24 99.0
MsG0880046675.01.T01 AT1G19000 55.556 108 45 2 134 241 92 196 9.94e-24 99.0
MsG0880046675.01.T01 AT3G10590 47.917 96 48 2 129 223 96 190 3.17e-18 82.0
MsG0880046675.01.T01 AT1G75250 38.667 75 43 1 5 79 3 74 5.41e-13 64.7
MsG0880046675.01.T01 AT4G39250 40.909 66 36 1 14 79 14 76 5.89e-13 64.7
MsG0880046675.01.T01 AT1G75250 38.667 75 43 1 5 79 3 74 1.33e-12 64.3
MsG0880046675.01.T01 AT2G21650 34.615 78 45 2 14 91 14 85 9.06e-11 58.5

Find 76 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGATCAAGTTGTAATTT+TGG 0.168041 8:+76623158 MsG0880046675.01.T01:CDS
TCTAATTCATTAGCATAATT+TGG 0.179151 8:-76623083 None:intergenic
TTACTTGGTTTAGACAAATT+TGG 0.202969 8:+76623614 MsG0880046675.01.T01:CDS
CATCATCCTCCTGGTGGTTT+AGG 0.251182 8:+76623899 MsG0880046675.01.T01:CDS
TTACCATGTTGACCTGTTAT+TGG 0.282124 8:-76623818 None:intergenic
TTCAAACAAAGATTCTTCTA+AGG 0.298166 8:+76623118 MsG0880046675.01.T01:CDS
ACAAATTTGGAAAAGGAGAT+TGG 0.304845 8:+76623627 MsG0880046675.01.T01:CDS
CCTTCAAATACAATGGGTTT+AGG 0.313838 8:+76623848 MsG0880046675.01.T01:CDS
ATCTGTCCCCAACAAAAGTA+TGG 0.337048 8:+76622989 MsG0880046675.01.T01:CDS
CAAGGAACTTTGTGATATCT+AGG 0.372284 8:+76623660 MsG0880046675.01.T01:CDS
TGTTGCTCCTCCTGCTCATA+TGG 0.385813 8:+76623952 MsG0880046675.01.T01:CDS
AATCATCAAGCACCAATAAC+AGG 0.394644 8:+76623806 MsG0880046675.01.T01:CDS
CCTAAACCCATTGTATTTGA+AGG 0.400664 8:-76623848 None:intergenic
ATCCACCTTTACCACTACTA+TGG 0.406819 8:-76623217 None:intergenic
AGGATGATGGGAAGCATAAC+AGG 0.407625 8:-76623992 None:intergenic
TTCTTCTTCATAGCTCCAAA+TGG 0.430907 8:-76622889 None:intergenic
CCTGGTGGTTTAGGAATGTA+TGG 0.438589 8:+76623908 MsG0880046675.01.T01:CDS
TGTCATCAAGTGGAGCCATT+TGG 0.441940 8:+76622874 MsG0880046675.01.T01:CDS
GCTCATATGGCATCTGCAGT+TGG 0.444181 8:+76623965 MsG0880046675.01.T01:CDS
ATTTGTCATTGGTGCATTGT+TGG 0.444498 8:-76624063 None:intergenic
ATGCACAAAAGTATTTCATA+AGG 0.449793 8:+76623705 MsG0880046675.01.T01:CDS
AGAAGATTCAAAAGAACAAT+GGG 0.451020 8:+76622953 MsG0880046675.01.T01:CDS
CTATGCTCTTCTTCTGTCCA+TGG 0.458260 8:-76623287 None:intergenic
CTCATATGGCATCTGCAGTT+GGG 0.466530 8:+76623966 MsG0880046675.01.T01:CDS
GCATGACTTGCTACTTGTGT+TGG 0.467928 8:-76623686 None:intergenic
ACTTGATGACATGTTGGCCC+TGG 0.477234 8:-76622862 None:intergenic
ACAATCCCTTCAAATACAAT+GGG 0.480739 8:+76623842 MsG0880046675.01.T01:CDS
CACAATCCCTTCAAATACAA+TGG 0.482952 8:+76623841 MsG0880046675.01.T01:CDS
GGTTTAGACAAATTTGGAAA+AGG 0.486380 8:+76623620 MsG0880046675.01.T01:CDS
TCAGAACAAGAAAGGAGAAA+AGG 0.492641 8:+76623260 MsG0880046675.01.T01:CDS
GCAACAACAGGATGTCCAAC+TGG 0.493168 8:-76623935 None:intergenic
TGTTAACACTAGTAATATCA+TGG 0.493710 8:-76623766 None:intergenic
TGAGCAGGAGGAGCAACAAC+AGG 0.495632 8:-76623947 None:intergenic
CTAAACCCATTGTATTTGAA+GGG 0.499951 8:-76623847 None:intergenic
CATCATCATCAGAACAAGAA+AGG 0.501232 8:+76623252 MsG0880046675.01.T01:CDS
GTTCAGCCTCATCATCCTCC+TGG 0.503699 8:+76623890 MsG0880046675.01.T01:CDS
TGTACCTCTTGCTTACCCTA+TGG 0.504295 8:+76624035 MsG0880046675.01.T01:CDS
TAAGCAAGAGGTACAACATA+AGG 0.508613 8:-76624027 None:intergenic
TGCATTGTTGGAGGTGCCAT+AGG 0.508759 8:-76624051 None:intergenic
TGTCATTGGTGCATTGTTGG+AGG 0.508792 8:-76624060 None:intergenic
AGAATGCTATAGCCATGCAT+TGG 0.517213 8:+76622922 MsG0880046675.01.T01:CDS
CACCTTTACCACTACTATGG+TGG 0.519881 8:-76623214 None:intergenic
GTGGATGATGATGAGGATGA+TGG 0.538579 8:-76624005 None:intergenic
ACCCACCATAGTAGTGGTAA+AGG 0.542637 8:+76623212 MsG0880046675.01.T01:CDS
AAGAAGATTCAAAAGAACAA+TGG 0.544714 8:+76622952 MsG0880046675.01.T01:CDS
GATGACATGTTGGCCCTGGT+TGG 0.547524 8:-76622858 None:intergenic
GAGATTGGAGAAGTATATCA+AGG 0.547704 8:+76623642 MsG0880046675.01.T01:CDS
AAAGGAGAAAAGGAATTCCA+TGG 0.553013 8:+76623270 MsG0880046675.01.T01:CDS
ACTGCAGATGCCATATGAGC+AGG 0.554621 8:-76623962 None:intergenic
GGAATGTATGGAGCACCAGT+TGG 0.557234 8:+76623920 MsG0880046675.01.T01:CDS
TAACATCATCTGCCAACACT+TGG 0.564260 8:-76623031 None:intergenic
CAATGAATAGAGATAGAAGA+AGG 0.573297 8:+76623735 MsG0880046675.01.T01:CDS
AATTCCAAAGAAATCCAACC+AGG 0.579862 8:+76622844 None:intergenic
TGGATGATGATGAGGATGAT+GGG 0.583871 8:-76624004 None:intergenic
ACCTTTACCACTACTATGGT+GGG 0.587562 8:-76623213 None:intergenic
CAGCCTCATCATCCTCCTGG+TGG 0.590947 8:+76623893 MsG0880046675.01.T01:CDS
CACCATAGTAGTGGTAAAGG+TGG 0.591929 8:+76623215 MsG0880046675.01.T01:CDS
AGATGATGTTAGTGCAATTG+AGG 0.593055 8:+76623043 MsG0880046675.01.T01:CDS
GAAACAACATTACCAAGTGT+TGG 0.597849 8:+76623019 MsG0880046675.01.T01:CDS
GCAAGAGGTACAACATAAGG+TGG 0.601447 8:-76624024 None:intergenic
GATGTTAGTGCAATTGAGGA+AGG 0.604039 8:+76623047 MsG0880046675.01.T01:CDS
GGCTCCACTTGATGACATGT+TGG 0.607903 8:-76622868 None:intergenic
AGGGCCAACATGTCATCAAG+TGG 0.623051 8:+76622864 MsG0880046675.01.T01:CDS
CCATACATTCCTAAACCACC+AGG 0.623664 8:-76623908 None:intergenic
GACTCTACCCACCATAGTAG+TGG 0.624946 8:+76623206 MsG0880046675.01.T01:CDS
AAACCACCAGGAGGATGATG+AGG 0.627717 8:-76623896 None:intergenic
GTGGTAAAGGTGGATTGTCA+AGG 0.632578 8:+76623225 MsG0880046675.01.T01:CDS
GCATTGTTGGAGGTGCCATA+GGG 0.632899 8:-76624050 None:intergenic
CATGGACAGAAGAAGAGCAT+AGG 0.635255 8:+76623288 MsG0880046675.01.T01:CDS
GATATTACTAGTGTTAACAA+TGG 0.637555 8:+76623770 MsG0880046675.01.T01:CDS
GCACCAATAACAGGTCAACA+TGG 0.640651 8:+76623815 MsG0880046675.01.T01:CDS
GCAGATGCCATATGAGCAGG+AGG 0.646062 8:-76623959 None:intergenic
ACATAAGGTGGATGATGATG+AGG 0.659765 8:-76624012 None:intergenic
ATTCCAAAGAAATCCAACCA+GGG 0.702839 8:+76622845 None:intergenic
GGTGCCATAGGGTAAGCAAG+AGG 0.704654 8:-76624039 None:intergenic
TACATTCCTAAACCACCAGG+AGG 0.734599 8:-76623905 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAGATTTGTCAT+TGG - Chr8:76624077-76624096 None:intergenic 15.0%
!!! TGTTTCTTTTTTTTTTTTTC+AGG + Chr8:76623585-76623604 MsG0880046675.01.T01:intron 15.0%
!! TCTAATTCATTAGCATAATT+TGG - Chr8:76623086-76623105 None:intergenic 20.0%
!! TTCAAGGTAATTAATTAACA+TGG + Chr8:76623536-76623555 MsG0880046675.01.T01:intron 20.0%
!!! AAAAGATCAAGTTGTAATTT+TGG + Chr8:76623158-76623177 MsG0880046675.01.T01:CDS 20.0%
!!! TTTTTCAGGTTATTTTTACT+TGG + Chr8:76623599-76623618 MsG0880046675.01.T01:intron 20.0%
! AAGAAGATTCAAAAGAACAA+TGG + Chr8:76622952-76622971 MsG0880046675.01.T01:CDS 25.0%
! AGAAGATTCAAAAGAACAAT+GGG + Chr8:76622953-76622972 MsG0880046675.01.T01:CDS 25.0%
! AGATGTACAAAATTTCAACA+AGG + Chr8:76623502-76623521 MsG0880046675.01.T01:intron 25.0%
! ATCGATGAACAATTATATGA+AGG - Chr8:76623350-76623369 None:intergenic 25.0%
! ATGAAATATATTTGTGCACA+CGG - Chr8:76623468-76623487 None:intergenic 25.0%
! GATATTACTAGTGTTAACAA+TGG + Chr8:76623770-76623789 MsG0880046675.01.T01:CDS 25.0%
! TCGATGAACAATTATATGAA+GGG - Chr8:76623349-76623368 None:intergenic 25.0%
! TGTTAACACTAGTAATATCA+TGG - Chr8:76623769-76623788 None:intergenic 25.0%
! TTACTTGGTTTAGACAAATT+TGG + Chr8:76623614-76623633 MsG0880046675.01.T01:CDS 25.0%
! TTCAAACAAAGATTCTTCTA+AGG + Chr8:76623118-76623137 MsG0880046675.01.T01:CDS 25.0%
!!! ATGCACAAAAGTATTTCATA+AGG + Chr8:76623705-76623724 MsG0880046675.01.T01:CDS 25.0%
ACAAATTTGGAAAAGGAGAT+TGG + Chr8:76623627-76623646 MsG0880046675.01.T01:CDS 30.0%
ACAATCCCTTCAAATACAAT+GGG + Chr8:76623842-76623861 MsG0880046675.01.T01:CDS 30.0%
CAAGGATTCATTTCAATTCA+AGG + Chr8:76623520-76623539 MsG0880046675.01.T01:intron 30.0%
CAATGAATAGAGATAGAAGA+AGG + Chr8:76623735-76623754 MsG0880046675.01.T01:CDS 30.0%
CTAAACCCATTGTATTTGAA+GGG - Chr8:76623850-76623869 None:intergenic 30.0%
GGTTTAGACAAATTTGGAAA+AGG + Chr8:76623620-76623639 MsG0880046675.01.T01:CDS 30.0%
! ACTTGTTCCATACTTTTGTT+GGG - Chr8:76622999-76623018 None:intergenic 30.0%
! TGATCTTTTATCTGAACTTG+TGG - Chr8:76623147-76623166 None:intergenic 30.0%
!! CAAGTTGTAATTTTGGAAGT+GGG + Chr8:76623165-76623184 MsG0880046675.01.T01:CDS 30.0%
!! TCAAGTTGTAATTTTGGAAG+TGG + Chr8:76623164-76623183 MsG0880046675.01.T01:CDS 30.0%
!!! TTCTTTTTCAATCCAATGCA+TGG - Chr8:76622937-76622956 None:intergenic 30.0%
AAAGGAGAAAAGGAATTCCA+TGG + Chr8:76623270-76623289 MsG0880046675.01.T01:CDS 35.0%
AATCATCAAGCACCAATAAC+AGG + Chr8:76623806-76623825 MsG0880046675.01.T01:CDS 35.0%
AGATGATGTTAGTGCAATTG+AGG + Chr8:76623043-76623062 MsG0880046675.01.T01:CDS 35.0%
ATTTGTCATTGGTGCATTGT+TGG - Chr8:76624066-76624085 None:intergenic 35.0%
CAAGGAACTTTGTGATATCT+AGG + Chr8:76623660-76623679 MsG0880046675.01.T01:CDS 35.0%
CACAATCCCTTCAAATACAA+TGG + Chr8:76623841-76623860 MsG0880046675.01.T01:CDS 35.0%
CATCATCATCAGAACAAGAA+AGG + Chr8:76623252-76623271 MsG0880046675.01.T01:CDS 35.0%
CCTAAACCCATTGTATTTGA+AGG - Chr8:76623851-76623870 None:intergenic 35.0%
GAAACAACATTACCAAGTGT+TGG + Chr8:76623019-76623038 MsG0880046675.01.T01:CDS 35.0%
TCAGAACAAGAAAGGAGAAA+AGG + Chr8:76623260-76623279 MsG0880046675.01.T01:CDS 35.0%
TTACCATGTTGACCTGTTAT+TGG - Chr8:76623821-76623840 None:intergenic 35.0%
TTCTTCTTCATAGCTCCAAA+TGG - Chr8:76622892-76622911 None:intergenic 35.0%
! CACTTGTTCCATACTTTTGT+TGG - Chr8:76623000-76623019 None:intergenic 35.0%
! CCTTCAAATACAATGGGTTT+AGG + Chr8:76623848-76623867 MsG0880046675.01.T01:CDS 35.0%
! CTTGTTCCATACTTTTGTTG+GGG - Chr8:76622998-76623017 None:intergenic 35.0%
! GAGATTGGAGAAGTATATCA+AGG + Chr8:76623642-76623661 MsG0880046675.01.T01:CDS 35.0%
! TAAGCAAGAGGTACAACATA+AGG - Chr8:76624030-76624049 None:intergenic 35.0%
! TCTTTTATCTGAACTTGTGG+TGG - Chr8:76623144-76623163 None:intergenic 35.0%
!! AATTTTGGAAGTGGGTTTTC+TGG + Chr8:76623173-76623192 MsG0880046675.01.T01:CDS 35.0%
ACCTTTACCACTACTATGGT+GGG - Chr8:76623216-76623235 None:intergenic 40.0%
AGAATGCTATAGCCATGCAT+TGG + Chr8:76622922-76622941 MsG0880046675.01.T01:CDS 40.0%
ATCCACCTTTACCACTACTA+TGG - Chr8:76623220-76623239 None:intergenic 40.0%
ATCTGTCCCCAACAAAAGTA+TGG + Chr8:76622989-76623008 MsG0880046675.01.T01:CDS 40.0%
GATGTTAGTGCAATTGAGGA+AGG + Chr8:76623047-76623066 MsG0880046675.01.T01:CDS 40.0%
TAACATCATCTGCCAACACT+TGG - Chr8:76623034-76623053 None:intergenic 40.0%
! ACATAAGGTGGATGATGATG+AGG - Chr8:76624015-76624034 None:intergenic 40.0%
! TGGATGATGATGAGGATGAT+GGG - Chr8:76624007-76624026 None:intergenic 40.0%
ACCCACCATAGTAGTGGTAA+AGG + Chr8:76623212-76623231 MsG0880046675.01.T01:CDS 45.0%
CACCATAGTAGTGGTAAAGG+TGG + Chr8:76623215-76623234 MsG0880046675.01.T01:CDS 45.0%
CACCTTTACCACTACTATGG+TGG - Chr8:76623217-76623236 None:intergenic 45.0%
CCATACATTCCTAAACCACC+AGG - Chr8:76623911-76623930 None:intergenic 45.0%
CCTGGTGGTTTAGGAATGTA+TGG + Chr8:76623908-76623927 MsG0880046675.01.T01:CDS 45.0%
CTATGCTCTTCTTCTGTCCA+TGG - Chr8:76623290-76623309 None:intergenic 45.0%
CTCATATGGCATCTGCAGTT+GGG + Chr8:76623966-76623985 MsG0880046675.01.T01:CDS 45.0%
GCACCAATAACAGGTCAACA+TGG + Chr8:76623815-76623834 MsG0880046675.01.T01:CDS 45.0%
TACATTCCTAAACCACCAGG+AGG - Chr8:76623908-76623927 None:intergenic 45.0%
TGTACCTCTTGCTTACCCTA+TGG + Chr8:76624035-76624054 MsG0880046675.01.T01:CDS 45.0%
TGTCATCAAGTGGAGCCATT+TGG + Chr8:76622874-76622893 MsG0880046675.01.T01:CDS 45.0%
TGTCATTGGTGCATTGTTGG+AGG - Chr8:76624063-76624082 None:intergenic 45.0%
! CATGGACAGAAGAAGAGCAT+AGG + Chr8:76623288-76623307 MsG0880046675.01.T01:CDS 45.0%
! GCAAGAGGTACAACATAAGG+TGG - Chr8:76624027-76624046 None:intergenic 45.0%
! GTGGATGATGATGAGGATGA+TGG - Chr8:76624008-76624027 None:intergenic 45.0%
!! AGGATGATGGGAAGCATAAC+AGG - Chr8:76623995-76624014 None:intergenic 45.0%
!! GCATGACTTGCTACTTGTGT+TGG - Chr8:76623689-76623708 None:intergenic 45.0%
!! GTGGTAAAGGTGGATTGTCA+AGG + Chr8:76623225-76623244 MsG0880046675.01.T01:CDS 45.0%
!!! GGAAGTGGGTTTTCTGGTTT+AGG + Chr8:76623179-76623198 MsG0880046675.01.T01:CDS 45.0%
AAACCACCAGGAGGATGATG+AGG - Chr8:76623899-76623918 None:intergenic 50.0%
ACTGCAGATGCCATATGAGC+AGG - Chr8:76623965-76623984 None:intergenic 50.0%
AGGGCCAACATGTCATCAAG+TGG + Chr8:76622864-76622883 MsG0880046675.01.T01:CDS 50.0%
CATCATCCTCCTGGTGGTTT+AGG + Chr8:76623899-76623918 MsG0880046675.01.T01:CDS 50.0%
GACTCTACCCACCATAGTAG+TGG + Chr8:76623206-76623225 MsG0880046675.01.T01:CDS 50.0%
GCAACAACAGGATGTCCAAC+TGG - Chr8:76623938-76623957 None:intergenic 50.0%
GCTCATATGGCATCTGCAGT+TGG + Chr8:76623965-76623984 MsG0880046675.01.T01:CDS 50.0%
TGTTGCTCCTCCTGCTCATA+TGG + Chr8:76623952-76623971 MsG0880046675.01.T01:CDS 50.0%
! ACTTGATGACATGTTGGCCC+TGG - Chr8:76622865-76622884 None:intergenic 50.0%
! GGAATGTATGGAGCACCAGT+TGG + Chr8:76623920-76623939 MsG0880046675.01.T01:CDS 50.0%
! GGCTCCACTTGATGACATGT+TGG - Chr8:76622871-76622890 None:intergenic 50.0%
!! GCATTGTTGGAGGTGCCATA+GGG - Chr8:76624053-76624072 None:intergenic 50.0%
!! TGCATTGTTGGAGGTGCCAT+AGG - Chr8:76624054-76624073 None:intergenic 50.0%
GATGACATGTTGGCCCTGGT+TGG - Chr8:76622861-76622880 None:intergenic 55.0%
GCAGATGCCATATGAGCAGG+AGG - Chr8:76623962-76623981 None:intergenic 55.0%
GTTCAGCCTCATCATCCTCC+TGG + Chr8:76623890-76623909 MsG0880046675.01.T01:CDS 55.0%
TGAGCAGGAGGAGCAACAAC+AGG - Chr8:76623950-76623969 None:intergenic 55.0%
! GGTGCCATAGGGTAAGCAAG+AGG - Chr8:76624042-76624061 None:intergenic 55.0%
CAGCCTCATCATCCTCCTGG+TGG + Chr8:76623893-76623912 MsG0880046675.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 76622855 76624123 76622855 ID=MsG0880046675.01;Name=MsG0880046675.01
Chr8 mRNA 76622855 76624123 76622855 ID=MsG0880046675.01.T01;Parent=MsG0880046675.01;Name=MsG0880046675.01.T01;_AED=0.24;_eAED=0.34;_QI=0|0|0|1|1|1|2|0|323
Chr8 exon 76622855 76623309 76622855 ID=MsG0880046675.01.T01:exon:8553;Parent=MsG0880046675.01.T01
Chr8 exon 76623607 76624123 76623607 ID=MsG0880046675.01.T01:exon:8554;Parent=MsG0880046675.01.T01
Chr8 CDS 76622855 76623309 76622855 ID=MsG0880046675.01.T01:cds;Parent=MsG0880046675.01.T01
Chr8 CDS 76623607 76624123 76623607 ID=MsG0880046675.01.T01:cds;Parent=MsG0880046675.01.T01
Gene Sequence

>MsG0880046675.01.T01

AATCCAACCAGGGCCAACATGTCATCAAGTGGAGCCATTTGGAGCTATGAAGAAGAAAAAGCATTTGAGAATGCTATAGCCATGCATTGGATTGAAAAAGAAGATTCAAAAGAACAATGGGAAAAGATTGCTTCATCTGTCCCCAACAAAAGTATGGAACAAGTGAAACAACATTACCAAGTGTTGGCAGATGATGTTAGTGCAATTGAGGAAGGTCATGTATCATTGCCAAATTATGCTAATGAATTAGATACTATTAATTCTTCAAACAAAGATTCTTCTAAGGCCACCACAAGTTCAGATAAAAGATCAAGTTGTAATTTTGGAAGTGGGTTTTCTGGTTTAGGACATGACTCTACCCACCATAGTAGTGGTAAAGGTGGATTGTCAAGGTCATCATCATCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAAGAGCATAGGTTATTTTTACTTGGTTTAGACAAATTTGGAAAAGGAGATTGGAGAAGTATATCAAGGAACTTTGTGATATCTAGGACACCAACACAAGTAGCAAGTCATGCACAAAAGTATTTCATAAGGTTGAATTCAATGAATAGAGATAGAAGAAGGTCTAGTATCCATGATATTACTAGTGTTAACAATGGAGATGTAGCTAGTAATCATCAAGCACCAATAACAGGTCAACATGGTAACACAATCCCTTCAAATACAATGGGTTTAGGACAATCAATGAAGCATAGAGTTCAGCCTCATCATCCTCCTGGTGGTTTAGGAATGTATGGAGCACCAGTTGGACATCCTGTTGTTGCTCCTCCTGCTCATATGGCATCTGCAGTTGGGACACCTGTTATGCTTCCCATCATCCTCATCATCATCCACCTTATGTTGTACCTCTTGCTTACCCTATGGCACCTCCAACAATGCACCAATGACAAATCTTTTTTTTTTTTTTTTTTTTTTTTTTGTCGAAAATAA

Protein sequence

>MsG0880046675.01.T01

NPTRANMSSSGAIWSYEEEKAFENAIAMHWIEKEDSKEQWEKIASSVPNKSMEQVKQHYQVLADDVSAIEEGHVSLPNYANELDTINSSNKDSSKATTSSDKRSSCNFGSGFSGLGHDSTHHSSGKGGLSRSSSSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNHQAPITGQHGNTIPSNTMGLGQSMKHRVQPHHPPGGLGMYGAPVGHPVVAPPAHMASAVGTPVMLPIILIIIHLMLYLLLTLWHLQQCTNDKSFFFFFFFFCRK*