Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060770 | XP_003589619.1 | 95.318 | 299 | 14 | 0 | 18 | 316 | 18 | 316 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060770 | sp|Q9M2E2|SDR1_ARATH | 39.465 | 299 | 146 | 8 | 42 | 316 | 9 | 296 | 4.57e-59 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060770 | G7I950 | 95.318 | 299 | 14 | 0 | 18 | 316 | 18 | 316 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0060770 | 0.804005 | 2.658465e-49 | -8.615850e-47 |
| Msa0008090 | Msa0060770 | 0.800674 | 1.290298e-48 | -8.615850e-47 |
| Msa0023000 | Msa0060770 | 0.803928 | 2.758531e-49 | -8.615850e-47 |
| Msa0027260 | Msa0060770 | 0.818356 | 2.045419e-52 | -8.615850e-47 |
| Msa0033110 | Msa0060770 | 0.804647 | 1.953641e-49 | -8.615850e-47 |
| Msa0033260 | Msa0060770 | 0.801534 | 8.603533e-49 | -8.615850e-47 |
| Msa0047160 | Msa0060770 | 0.800459 | 1.426811e-48 | -8.615850e-47 |
| Msa0051170 | Msa0060770 | 0.806585 | 7.659718e-50 | -8.615850e-47 |
| Msa0051270 | Msa0060770 | 0.801409 | 9.127676e-49 | -8.615850e-47 |
| Msa0060770 | Msa0091410 | 0.802350 | 5.849796e-49 | -8.615850e-47 |
| Msa0060770 | Msa0091570 | 0.816629 | 5.012426e-52 | -8.615850e-47 |
| Msa0060770 | Msa0094470 | 0.821058 | 4.940313e-53 | -8.615850e-47 |
| Msa0060770 | Msa0100740 | 0.832939 | 7.100140e-56 | -8.615850e-47 |
| Msa0060770 | Msa0115390 | 0.801546 | 8.557594e-49 | -8.615850e-47 |
| Msa0060770 | Msa0128860 | 0.800971 | 1.122138e-48 | -8.615850e-47 |
| Msa0060770 | Msa0144540 | 0.803690 | 3.091370e-49 | -8.615850e-47 |
| Msa0060770 | Msa0160550 | 0.814307 | 1.647220e-51 | -8.615850e-47 |
| Msa0060770 | Msa0174730 | 0.801658 | 8.116160e-49 | -8.615850e-47 |
| Msa0060770 | Msa0183460 | 0.812923 | 3.319791e-51 | -8.615850e-47 |
| Msa0060770 | Msa0194480 | 0.822044 | 2.923988e-53 | -8.615850e-47 |
| Msa0060770 | Msa0199690 | 0.812052 | 5.148233e-51 | -8.615850e-47 |
| Msa0060770 | Msa0199880 | 0.831553 | 1.564250e-55 | -8.615850e-47 |
| Msa0060770 | Msa0209350 | 0.805989 | 1.022468e-49 | -8.615850e-47 |
| Msa0060770 | Msa0228070 | 0.811129 | 8.167987e-51 | -8.615850e-47 |
| Msa0060770 | Msa0231980 | 0.804233 | 2.383068e-49 | -8.615850e-47 |
| Msa0060770 | Msa0232050 | 0.803768 | 2.976964e-49 | -8.615850e-47 |
| Msa0060770 | Msa0236270 | 0.841108 | 5.803595e-58 | -8.615850e-47 |
| Msa0060770 | Msa0242410 | 0.809801 | 1.580937e-50 | -8.615850e-47 |
| Msa0060770 | Msa0260240 | 0.800361 | 1.494129e-48 | -8.615850e-47 |
| Msa0060770 | Msa0262050 | 0.801789 | 7.628920e-49 | -8.615850e-47 |
| Msa0060770 | Msa0262310 | 0.803978 | 2.692773e-49 | -8.615850e-47 |
| Msa0060770 | Msa0298700 | 0.806330 | 8.669696e-50 | -8.615850e-47 |
| Msa0060770 | Msa0304260 | 0.803245 | 3.822853e-49 | -8.615850e-47 |
| Msa0060770 | Msa0304590 | 0.816432 | 5.547283e-52 | -8.615850e-47 |
| Msa0060770 | Msa0304660 | 0.807575 | 4.727720e-50 | -8.615850e-47 |
| Msa0060770 | Msa0331700 | 0.806841 | 6.761154e-50 | -8.615850e-47 |
| Msa0060770 | Msa0337240 | 0.800603 | 1.333621e-48 | -8.615850e-47 |
| Msa0060770 | Msa0366890 | 0.840495 | 8.399974e-58 | -8.615850e-47 |
| Msa0060770 | Msa0369050 | 0.807359 | 5.252556e-50 | -8.615850e-47 |
| Msa0060770 | Msa0376300 | 0.839901 | 1.201115e-57 | -8.615850e-47 |
| Msa0060770 | Msa0376310 | 0.827685 | 1.364971e-54 | -8.615850e-47 |
| Msa0060770 | Msa0376690 | 0.823424 | 1.395676e-53 | -8.615850e-47 |
| Msa0060770 | Msa0379080 | 0.821197 | 4.588989e-53 | -8.615850e-47 |
| Msa0060770 | Msa0385580 | 0.802595 | 5.207410e-49 | -8.615850e-47 |
| Msa0060770 | Msa0398950 | 0.815290 | 9.973043e-52 | -8.615850e-47 |
| Msa0060770 | Msa0414800 | 0.838662 | 2.517682e-57 | -8.615850e-47 |
| Msa0060770 | Msa0453230 | 0.800356 | 1.498038e-48 | -8.615850e-47 |
| Msa0060770 | Msa0458060 | 0.853746 | 1.949358e-61 | -8.615850e-47 |
| Msa0060770 | Msa0471590 | 0.833802 | 4.325579e-56 | -8.615850e-47 |
| Msa0060770 | Msa0508590 | 0.828440 | 8.981561e-55 | -8.615850e-47 |
| Msa0060770 | Msa0508630 | 0.813818 | 2.111101e-51 | -8.615850e-47 |
| Msa0060770 | Msa0534900 | 0.801826 | 7.497224e-49 | -8.615850e-47 |
| Msa0060770 | Msa0541360 | 0.807046 | 6.119660e-50 | -8.615850e-47 |
| Msa0060770 | Msa0581110 | 0.800722 | 1.261595e-48 | -8.615850e-47 |
| Msa0060770 | Msa0589190 | 0.802192 | 6.304461e-49 | -8.615850e-47 |
| Msa0060770 | Msa0610430 | 0.806066 | 9.852144e-50 | -8.615850e-47 |
| Msa0060770 | Msa0623790 | 0.814704 | 1.345589e-51 | -8.615850e-47 |
| Msa0060770 | Msa0631350 | 0.810254 | 1.263056e-50 | -8.615850e-47 |
| Msa0060770 | Msa0643560 | 0.820258 | 7.543965e-53 | -8.615850e-47 |
| Msa0060770 | Msa0650920 | 0.805450 | 1.327138e-49 | -8.615850e-47 |
| Msa0060770 | Msa0661300 | 0.817653 | 2.948862e-52 | -8.615850e-47 |
| Msa0060770 | Msa0669520 | 0.812712 | 3.693822e-51 | -8.615850e-47 |
| Msa0060770 | Msa0687630 | 0.803978 | 2.692967e-49 | -8.615850e-47 |
| Msa0060770 | Msa0689500 | 0.802379 | 5.769931e-49 | -8.615850e-47 |
| Msa0060770 | Msa0698540 | 0.810346 | 1.206492e-50 | -8.615850e-47 |
| Msa0060770 | Msa0706960 | 0.803529 | 3.337176e-49 | -8.615850e-47 |
| Msa0060770 | Msa0763070 | 0.800773 | 1.231187e-48 | -8.615850e-47 |
| Msa0060770 | Msa0774540 | 0.801477 | 8.841399e-49 | -8.615850e-47 |
| Msa0060770 | Msa0823090 | 0.800021 | 1.752298e-48 | -8.615850e-47 |
| Msa0060770 | Msa0847080 | 0.843449 | 1.392169e-58 | -8.615850e-47 |
| Msa0060770 | Msa0847770 | 0.800048 | 1.729922e-48 | -8.615850e-47 |
| Msa0060770 | Msa0900630 | 0.801466 | 8.887712e-49 | -8.615850e-47 |
| Msa0060770 | Msa0926460 | 0.813842 | 2.086119e-51 | -8.615850e-47 |
| Msa0060770 | Msa0965860 | 0.814158 | 1.776452e-51 | -8.615850e-47 |
| Msa0060770 | Msa0968590 | 0.801405 | 9.146942e-49 | -8.615850e-47 |
| Msa0060770 | Msa1000690 | 0.805370 | 1.379521e-49 | -8.615850e-47 |
| Msa0060770 | Msa1019240 | 0.810778 | 9.730354e-51 | -8.615850e-47 |
| Msa0060770 | Msa1019260 | 0.823002 | 1.751237e-53 | -8.615850e-47 |
| Msa0060770 | Msa1040400 | 0.815631 | 8.375568e-52 | -8.615850e-47 |
| Msa0060770 | Msa1051200 | 0.803188 | 3.927529e-49 | -8.615850e-47 |
| Msa0060770 | Msa1081150 | 0.804792 | 1.822375e-49 | -8.615850e-47 |
| Msa0060770 | Msa1081930 | 0.811172 | 7.997698e-51 | -8.615850e-47 |
| Msa0060770 | Msa1084470 | 0.817432 | 3.308573e-52 | -8.615850e-47 |
| Msa0060770 | Msa1104140 | 0.813393 | 2.617928e-51 | -8.615850e-47 |
| Msa0060770 | Msa1104210 | 0.830312 | 3.151748e-55 | -8.615850e-47 |
| Msa0060770 | Msa1106700 | 0.820640 | 6.164534e-53 | -8.615850e-47 |
| Msa0060770 | Msa1126510 | 0.808475 | 3.041751e-50 | -8.615850e-47 |
| Msa0060770 | Msa1126830 | 0.804013 | 2.647857e-49 | -8.615850e-47 |
| Msa0060770 | Msa1131560 | 0.803321 | 3.685276e-49 | -8.615850e-47 |
| Msa0060770 | Msa1137700 | 0.800340 | 1.509213e-48 | -8.615850e-47 |
| Msa0060770 | Msa1165940 | 0.803447 | 3.470248e-49 | -8.615850e-47 |
| Msa0060770 | Msa1166860 | 0.810804 | 9.608783e-51 | -8.615850e-47 |
| Msa0060770 | Msa1204250 | 0.813928 | 1.996590e-51 | -8.615850e-47 |
| Msa0060770 | Msa1237940 | 0.813878 | 2.048271e-51 | -8.615850e-47 |
| Msa0060770 | Msa1295110 | 0.800140 | 1.657179e-48 | -8.615850e-47 |
| Msa0060770 | Msa1296830 | 0.809721 | 1.644970e-50 | -8.615850e-47 |
| Msa0060770 | Msa1307950 | 0.801529 | 8.624028e-49 | -8.615850e-47 |
| Msa0060770 | Msa1333110 | 0.814078 | 1.850411e-51 | -8.615850e-47 |
| Msa0060770 | Msa1336950 | 0.817198 | 3.734261e-52 | -8.615850e-47 |
| Msa0060770 | Msa1355970 | 0.802055 | 6.728197e-49 | -8.615850e-47 |
| Msa0060770 | Msa1368120 | 0.812565 | 3.976086e-51 | -8.615850e-47 |
| Msa0060770 | Msa1379760 | 0.806632 | 7.485377e-50 | -8.615850e-47 |
| Msa0060770 | Msa1385770 | 0.800816 | 1.206782e-48 | -8.615850e-47 |
| Msa0060770 | Msa1386780 | 0.802478 | 5.503729e-49 | -8.615850e-47 |
| Msa0060770 | Msa1387420 | 0.815768 | 7.806218e-52 | -8.615850e-47 |
| Msa0060770 | Msa1394290 | 0.807650 | 4.556938e-50 | -8.615850e-47 |
| Msa0060770 | Msa1444310 | 0.804663 | 1.939151e-49 | -8.615850e-47 |
| Msa0060770 | Msa1461280 | 0.806196 | 9.251342e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060770 | MtrunA17_Chr1g0160511 | 95.318 | 299 | 14 | 0 | 18 | 316 | 18 | 316 | 0.0 | 595 |
| Msa0060770 | MtrunA17_Chr3g0131521 | 76.948 | 308 | 71 | 0 | 9 | 316 | 4 | 311 | 0.0 | 511 |
| Msa0060770 | MtrunA17_Chr8g0385581 | 72.607 | 303 | 80 | 1 | 17 | 316 | 14 | 316 | 8.94e-169 | 471 |
| Msa0060770 | MtrunA17_Chr8g0349641 | 40.924 | 303 | 142 | 7 | 40 | 316 | 7 | 298 | 1.74e-62 | 200 |
| Msa0060770 | MtrunA17_Chr8g0349671 | 40.199 | 301 | 142 | 9 | 42 | 316 | 9 | 297 | 5.53e-62 | 199 |
| Msa0060770 | MtrunA17_Chr7g0247011 | 40.138 | 289 | 148 | 6 | 42 | 316 | 9 | 286 | 1.98e-61 | 197 |
| Msa0060770 | MtrunA17_Chr8g0349801 | 38.644 | 295 | 144 | 5 | 42 | 310 | 9 | 292 | 2.29e-61 | 197 |
| Msa0060770 | MtrunA17_Chr5g0425391 | 40.260 | 308 | 140 | 8 | 37 | 316 | 4 | 295 | 4.81e-61 | 196 |
| Msa0060770 | MtrunA17_Chr8g0349761 | 40.000 | 300 | 142 | 6 | 41 | 314 | 9 | 296 | 1.09e-60 | 196 |
| Msa0060770 | MtrunA17_Chr8g0349811 | 38.384 | 297 | 146 | 5 | 38 | 308 | 5 | 290 | 1.21e-60 | 195 |
| Msa0060770 | MtrunA17_Chr8g0349771 | 38.614 | 303 | 148 | 6 | 39 | 315 | 6 | 296 | 2.29e-60 | 194 |
| Msa0060770 | MtrunA17_Chr8g0349851 | 38.033 | 305 | 151 | 7 | 39 | 316 | 6 | 299 | 5.34e-60 | 194 |
| Msa0060770 | MtrunA17_Chr8g0349741 | 42.123 | 292 | 139 | 8 | 37 | 311 | 4 | 282 | 3.87e-59 | 191 |
| Msa0060770 | MtrunA17_Chr8g0349701 | 36.486 | 296 | 156 | 5 | 42 | 316 | 9 | 293 | 8.68e-59 | 190 |
| Msa0060770 | MtrunA17_Chr8g0349781 | 37.049 | 305 | 155 | 6 | 38 | 316 | 5 | 298 | 1.54e-58 | 190 |
| Msa0060770 | MtrunA17_Chr8g0349721 | 36.149 | 296 | 157 | 5 | 42 | 316 | 9 | 293 | 6.35e-58 | 188 |
| Msa0060770 | MtrunA17_Chr8g0349831 | 37.417 | 302 | 151 | 6 | 42 | 316 | 10 | 300 | 4.09e-57 | 186 |
| Msa0060770 | MtrunA17_Chr3g0118511 | 37.500 | 296 | 146 | 5 | 42 | 308 | 5 | 290 | 5.92e-56 | 183 |
| Msa0060770 | MtrunA17_Chr7g0247041 | 36.913 | 298 | 154 | 6 | 42 | 316 | 8 | 294 | 1.59e-54 | 179 |
| Msa0060770 | MtrunA17_Chr8g0349751 | 39.456 | 294 | 140 | 8 | 42 | 308 | 59 | 341 | 3.12e-54 | 180 |
| Msa0060770 | MtrunA17_Chr7g0247031 | 37.931 | 290 | 154 | 7 | 42 | 316 | 10 | 288 | 2.41e-53 | 176 |
| Msa0060770 | MtrunA17_Chr7g0267881 | 44.240 | 217 | 104 | 6 | 42 | 251 | 11 | 217 | 5.28e-49 | 163 |
| Msa0060770 | MtrunA17_Chr8g0349651 | 38.028 | 284 | 136 | 9 | 61 | 316 | 4 | 275 | 1.53e-46 | 158 |
| Msa0060770 | MtrunA17_Chr4g0045691 | 38.547 | 179 | 99 | 5 | 143 | 316 | 1 | 173 | 7.94e-34 | 122 |
| Msa0060770 | MtrunA17_Chr5g0437701 | 35.606 | 132 | 79 | 1 | 185 | 316 | 3 | 128 | 2.60e-21 | 87.8 |
| Msa0060770 | MtrunA17_Chr4g0045711 | 45.263 | 95 | 45 | 3 | 34 | 121 | 16 | 110 | 1.42e-19 | 82.8 |
| Msa0060770 | MtrunA17_Chr3g0112151 | 34.722 | 144 | 91 | 3 | 34 | 175 | 83 | 225 | 1.96e-12 | 67.0 |
| Msa0060770 | MtrunA17_Chr4g0058731 | 24.567 | 289 | 170 | 10 | 42 | 313 | 51 | 308 | 6.19e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060770 | AT5G51030.1 | 65.806 | 310 | 106 | 0 | 7 | 316 | 5 | 314 | 3.61e-163 | 457 |
| Msa0060770 | AT5G61830.1 | 68.371 | 313 | 96 | 2 | 7 | 316 | 4 | 316 | 2.33e-161 | 452 |
| Msa0060770 | AT5G61830.2 | 68.371 | 313 | 96 | 2 | 7 | 316 | 4 | 316 | 2.33e-161 | 452 |
| Msa0060770 | AT3G59710.3 | 46.127 | 284 | 140 | 5 | 28 | 308 | 7 | 280 | 7.96e-79 | 242 |
| Msa0060770 | AT3G59710.2 | 46.263 | 281 | 138 | 5 | 31 | 308 | 39 | 309 | 1.58e-77 | 239 |
| Msa0060770 | AT3G59710.1 | 45.583 | 283 | 141 | 5 | 29 | 308 | 18 | 290 | 1.66e-76 | 236 |
| Msa0060770 | AT3G61220.1 | 39.465 | 299 | 146 | 8 | 42 | 316 | 9 | 296 | 4.64e-60 | 194 |
| Msa0060770 | AT3G61220.2 | 39.130 | 299 | 147 | 7 | 42 | 316 | 16 | 303 | 7.58e-60 | 194 |
| Msa0060770 | AT3G61220.3 | 39.465 | 299 | 146 | 8 | 42 | 316 | 40 | 327 | 1.52e-59 | 194 |
| Msa0060770 | AT2G24190.1 | 38.255 | 298 | 148 | 8 | 42 | 315 | 9 | 294 | 1.65e-57 | 187 |
| Msa0060770 | AT2G24190.2 | 38.255 | 298 | 148 | 8 | 42 | 315 | 14 | 299 | 2.03e-57 | 187 |
| Msa0060770 | AT1G01800.1 | 35.880 | 301 | 157 | 7 | 41 | 316 | 6 | 295 | 9.99e-55 | 180 |
| Msa0060770 | AT1G01800.2 | 33.880 | 183 | 110 | 3 | 134 | 316 | 89 | 260 | 8.61e-27 | 106 |
| Msa0060770 | AT5G50130.1 | 27.508 | 309 | 165 | 14 | 30 | 315 | 27 | 299 | 2.13e-14 | 73.2 |
| Msa0060770 | AT5G50130.9 | 30.000 | 220 | 128 | 9 | 30 | 226 | 27 | 243 | 1.39e-13 | 70.1 |
| Msa0060770 | AT5G50130.3 | 29.646 | 226 | 122 | 10 | 30 | 226 | 27 | 244 | 1.44e-13 | 70.1 |
| Msa0060770 | AT5G50130.2 | 30.000 | 220 | 128 | 9 | 30 | 226 | 27 | 243 | 3.16e-13 | 69.7 |
| Msa0060770 | AT5G50130.4 | 29.646 | 226 | 122 | 10 | 30 | 226 | 27 | 244 | 4.02e-13 | 69.3 |
| Msa0060770 | AT5G50130.7 | 28.136 | 295 | 153 | 15 | 44 | 315 | 8 | 266 | 2.63e-12 | 67.0 |
| Msa0060770 | AT1G63380.3 | 31.944 | 144 | 92 | 3 | 38 | 175 | 16 | 159 | 3.92e-12 | 65.9 |
| Msa0060770 | AT1G63380.2 | 31.944 | 144 | 92 | 3 | 38 | 175 | 23 | 166 | 4.09e-12 | 66.2 |
| Msa0060770 | AT1G63380.1 | 31.944 | 144 | 92 | 3 | 38 | 175 | 18 | 161 | 4.35e-12 | 65.9 |
| Msa0060770 | AT1G63380.4 | 31.944 | 144 | 92 | 3 | 38 | 175 | 20 | 163 | 4.42e-12 | 65.9 |
| Msa0060770 | AT1G62610.3 | 31.944 | 144 | 92 | 3 | 38 | 175 | 16 | 159 | 6.48e-12 | 65.5 |
| Msa0060770 | AT1G62610.1 | 31.944 | 144 | 92 | 3 | 38 | 175 | 15 | 158 | 7.19e-12 | 65.1 |
| Msa0060770 | AT1G62610.2 | 31.944 | 144 | 92 | 3 | 38 | 175 | 14 | 157 | 7.26e-12 | 65.1 |
| Msa0060770 | AT1G62610.4 | 31.944 | 144 | 92 | 3 | 38 | 175 | 20 | 163 | 7.31e-12 | 65.1 |
| Msa0060770 | AT3G46170.1 | 31.293 | 147 | 95 | 3 | 38 | 178 | 27 | 173 | 1.51e-11 | 64.3 |
| Msa0060770 | AT3G55290.2 | 31.293 | 147 | 95 | 3 | 38 | 178 | 18 | 164 | 3.22e-11 | 63.2 |
| Msa0060770 | AT3G55290.1 | 31.293 | 147 | 95 | 3 | 38 | 178 | 19 | 165 | 3.34e-11 | 63.2 |
| Msa0060770 | AT3G55310.1 | 31.293 | 147 | 95 | 3 | 38 | 178 | 18 | 164 | 4.47e-11 | 62.8 |
| Msa0060770 | AT5G50130.5 | 30.660 | 212 | 110 | 10 | 44 | 226 | 8 | 211 | 5.23e-11 | 62.8 |
Find 101 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGATAATTTAATTCTTT+TGG | 0.122871 | 1_2:+18633928 | Msa0060770:three_prime_UTR |
| ACAACGGATGGTTTCATTAA+TGG | 0.171749 | 1_2:-18632582 | None:intergenic |
| TTATGGTGGTTTAGATATTC+TGG | 0.207457 | 1_2:+18631722 | Msa0060770:CDS |
| GTTGCTTCACTGCATATAAA+TGG | 0.234055 | 1_2:+18631098 | Msa0060770:exon |
| TCACGTCTAGGTCGACTAAA+TGG | 0.234659 | 1_2:+18632630 | Msa0060770:CDS |
| ATGCTGGTGCTGAATCAATT+AGG | 0.236783 | 1_2:+18631604 | Msa0060770:CDS |
| TTGAAGAGATTAACCTTCTA+AGG | 0.249355 | 1_2:+18631169 | Msa0060770:CDS |
| GCTGGTGTTAATTTCAATCT+TGG | 0.282930 | 1_2:+18632477 | Msa0060770:CDS |
| ATAAGCATTAACAGCAAGTT+TGG | 0.286051 | 1_2:-18633455 | None:intergenic |
| AATTATCACTGATAATTATA+TGG | 0.286653 | 1_2:-18633916 | None:intergenic |
| TACTGCTGTTAGTTTGCTGC+TGG | 0.296288 | 1_2:+18633875 | Msa0060770:three_prime_UTR |
| TGCGACCACCAATGATAATA+AGG | 0.298261 | 1_2:+18633826 | Msa0060770:three_prime_UTR |
| TACCTTTGGTGATCGGAATA+AGG | 0.301057 | 1_2:-18631198 | None:intergenic |
| AATAAACAATTTCAAATTCA+TGG | 0.303045 | 1_2:+18631025 | Msa0060770:five_prime_UTR |
| GGCTGGAACACCATACTTAT+AGG | 0.305555 | 1_2:+18633793 | Msa0060770:three_prime_UTR |
| ATAGCGGGGAATAGTGATTC+TGG | 0.309682 | 1_2:+18631075 | Msa0060770:five_prime_UTR |
| ACCGGTGGAAATAGAGGAAT+TGG | 0.315043 | 1_2:+18631516 | Msa0060770:CDS |
| TAATGCTTATACAAGGCTTA+TGG | 0.345742 | 1_2:+18633468 | Msa0060770:CDS |
| TTTCCTAACCTTATTATCAT+TGG | 0.346969 | 1_2:-18633834 | None:intergenic |
| GAAACTATTGCTGTCGTTAC+CGG | 0.347929 | 1_2:+18631498 | Msa0060770:CDS |
| CAAAACCTTCCCTATAAGTA+TGG | 0.360029 | 1_2:-18633803 | None:intergenic |
| CAGTGGTTGCAGGAAAATTA+TGG | 0.362541 | 1_2:+18631705 | Msa0060770:CDS |
| AATAAGGAATAGACCTTAGA+AGG | 0.365707 | 1_2:-18631182 | None:intergenic |
| TGTAATTATTGTAGAAATTG+AGG | 0.366017 | 1_2:+18630977 | Msa0060770:five_prime_UTR |
| TGCTGGTGCTGAATCAATTA+GGG | 0.366104 | 1_2:+18631605 | Msa0060770:CDS |
| CTGCATGACCAAACAGTTAT+GGG | 0.371616 | 1_2:+18633634 | Msa0060770:CDS |
| GTTATTGAAACAAATTATTA+CGG | 0.375834 | 1_2:+18632531 | Msa0060770:CDS |
| GAATTGGGTTTGAGATTTGT+AGG | 0.377648 | 1_2:+18631532 | Msa0060770:CDS |
| CTGGTGTTAATTTCAATCTT+GGG | 0.380192 | 1_2:+18632478 | Msa0060770:CDS |
| GTTGAGGAAGGAGCTGATAC+TGG | 0.389307 | 1_2:+18633595 | Msa0060770:CDS |
| CCACTTTGTTCAGTGGTTGC+AGG | 0.392622 | 1_2:+18631695 | Msa0060770:CDS |
| TGGGTGAAGACGGCTTTAAC+AGG | 0.403091 | 1_2:+18633553 | Msa0060770:CDS |
| TTTATCTGGTTGTCATAGGC+TGG | 0.417312 | 1_2:+18633776 | Msa0060770:three_prime_UTR |
| AAGGAGCTGATACTGGAGTA+TGG | 0.430228 | 1_2:+18633602 | Msa0060770:CDS |
| CCTAACCTTATTATCATTGG+TGG | 0.437722 | 1_2:-18633831 | None:intergenic |
| TCTGCATGACCAAACAGTTA+TGG | 0.441007 | 1_2:+18633633 | Msa0060770:CDS |
| TGAGCAATGCCATGGTGTTA+TGG | 0.451453 | 1_2:+18633716 | Msa0060770:three_prime_UTR |
| TTTCAGAGGAACTGATTGAC+AGG | 0.453128 | 1_2:+18633347 | Msa0060770:CDS |
| GCTGGAACACCATACTTATA+GGG | 0.454837 | 1_2:+18633794 | Msa0060770:three_prime_UTR |
| AAGTGCTTTATATTGACGTT+AGG | 0.457411 | 1_2:+18630935 | Msa0060770:five_prime_UTR |
| GAAGATGGAAGCTGGACATC+AGG | 0.461972 | 1_2:+18633397 | Msa0060770:CDS |
| TTAATGAAACCATCCGTTGT+TGG | 0.467745 | 1_2:+18632585 | Msa0060770:CDS |
| CCACTGAACAAAGTGGTTGA+TGG | 0.467844 | 1_2:-18631688 | None:intergenic |
| TAGCGGGGAATAGTGATTCT+GGG | 0.468207 | 1_2:+18631076 | Msa0060770:five_prime_UTR |
| GCAGGAAGGTGGTTTGGATG+TGG | 0.470123 | 1_2:+18631632 | Msa0060770:CDS |
| TTGTGTGTGTTATAGCTTAG+CGG | 0.470346 | 1_2:+18633750 | Msa0060770:three_prime_UTR |
| CCACCAATGATAATAAGGTT+AGG | 0.474867 | 1_2:+18633831 | Msa0060770:three_prime_UTR |
| AATGGGTAAGGCGGAGAAGA+AGG | 0.474975 | 1_2:+18631116 | Msa0060770:exon |
| TGTAGGCAACTTGCTACTCA+TGG | 0.483655 | 1_2:+18631549 | Msa0060770:CDS |
| CACGTCTAGGTCGACTAAAT+GGG | 0.493046 | 1_2:+18632631 | Msa0060770:CDS |
| AATAACCAATGTAGCCTTGA+GGG | 0.498753 | 1_2:+18633300 | Msa0060770:CDS |
| ACTGCTGTTAGTTTGCTGCT+GGG | 0.499050 | 1_2:+18633876 | Msa0060770:three_prime_UTR |
| TTGCTTCACTGCATATAAAT+GGG | 0.500794 | 1_2:+18631099 | Msa0060770:exon |
| TTAACTGCTATTGCCCGGGT+TGG | 0.500994 | 1_2:+18633533 | Msa0060770:CDS |
| TAACTGCTATTGCCCGGGTT+GGG | 0.501130 | 1_2:+18633534 | Msa0060770:CDS |
| CTCTGTTGAAAATGCTCGCA+AGG | 0.514046 | 1_2:+18632509 | Msa0060770:CDS |
| AGATTGATACCTTTGGTGAT+CGG | 0.520596 | 1_2:-18631205 | None:intergenic |
| CCGGTGGAAATAGAGGAATT+GGG | 0.523137 | 1_2:+18631517 | Msa0060770:CDS |
| AACAAGTAGAAGATGGAAGC+TGG | 0.524013 | 1_2:+18633389 | Msa0060770:CDS |
| CCATCAACCACTTTGTTCAG+TGG | 0.531554 | 1_2:+18631688 | Msa0060770:CDS |
| TAACTGTTTGGTCATGCAGA+AGG | 0.535669 | 1_2:-18633630 | None:intergenic |
| GAGTAATCAGTATATATTTG+AGG | 0.535718 | 1_2:-18633427 | None:intergenic |
| TTGCTCCCTCAAGGCTACAT+TGG | 0.538467 | 1_2:-18633305 | None:intergenic |
| TTTGTTAACTGCTATTGCCC+GGG | 0.539327 | 1_2:+18633529 | Msa0060770:CDS |
| TTGCTGTTAATGCTTATACA+AGG | 0.539788 | 1_2:+18633461 | Msa0060770:CDS |
| CCCAATTCCTCTATTTCCAC+CGG | 0.540422 | 1_2:-18631517 | None:intergenic |
| TTGCCCGGGTTGGGTGAAGA+CGG | 0.541413 | 1_2:+18633543 | Msa0060770:CDS |
| TAATGTCAAGTTTCTTTCAG+AGG | 0.549051 | 1_2:+18633333 | Msa0060770:CDS |
| TTCCTTATTCCGATCACCAA+AGG | 0.551276 | 1_2:+18631196 | Msa0060770:CDS |
| TAACACCATGGCATTGCTCA+TGG | 0.559012 | 1_2:-18633713 | None:intergenic |
| TCACTGCATATAAATGGGTA+AGG | 0.561657 | 1_2:+18631104 | Msa0060770:exon |
| GTCGTTACCGGTGGAAATAG+AGG | 0.562574 | 1_2:+18631510 | Msa0060770:CDS |
| CCTGCAACCACTGAACAAAG+TGG | 0.566437 | 1_2:-18631695 | None:intergenic |
| TGCAGGAAACAATACTGTTG+AGG | 0.566965 | 1_2:+18633579 | Msa0060770:CDS |
| AAAGCCGTCTTCACCCAACC+CGG | 0.568919 | 1_2:-18633547 | None:intergenic |
| GATGGAAGCTGGACATCAGG+TGG | 0.570671 | 1_2:+18633400 | Msa0060770:CDS |
| ACATCAAGAGATGCTAATGC+TGG | 0.581456 | 1_2:+18631588 | Msa0060770:CDS |
| TATTGACGTTAGGTCGAGTG+AGG | 0.588066 | 1_2:+18630945 | Msa0060770:five_prime_UTR |
| AAGCTTTCTGAGCGACCAGA+AGG | 0.588998 | 1_2:+18633496 | Msa0060770:CDS |
| GTAAATGTAAGCTCACGTCT+AGG | 0.591413 | 1_2:+18632618 | Msa0060770:CDS |
| ATTACTCAGTTGCTCCCTCA+AGG | 0.591631 | 1_2:-18633314 | None:intergenic |
| GAACACCATACTTATAGGGA+AGG | 0.592764 | 1_2:+18633798 | Msa0060770:three_prime_UTR |
| AACTGTTTGGTCATGCAGAA+GGG | 0.594987 | 1_2:-18633629 | None:intergenic |
| TGATGGTAGGTAAACAATGC+TGG | 0.600125 | 1_2:+18632459 | Msa0060770:intron |
| ATTCGAGCACCAACAACGGA+TGG | 0.604995 | 1_2:-18632594 | None:intergenic |
| ATTGACGTTAGGTCGAGTGA+GGG | 0.611208 | 1_2:+18630946 | Msa0060770:five_prime_UTR |
| GGAAACAATACTGTTGAGGA+AGG | 0.613804 | 1_2:+18633583 | Msa0060770:CDS |
| TACAATTCGAGCACCAACAA+CGG | 0.619020 | 1_2:-18632598 | None:intergenic |
| TCAAATATATACTGATTACT+CGG | 0.632162 | 1_2:+18633429 | Msa0060770:CDS |
| AGCAGCCATGAGCAATGCCA+TGG | 0.634644 | 1_2:+18633708 | Msa0060770:three_prime_UTR |
| TAAGGCGGAGAAGAAGGAGA+AGG | 0.634663 | 1_2:+18631122 | Msa0060770:CDS |
| ATGGAAGCTGGACATCAGGT+GGG | 0.637642 | 1_2:+18633401 | Msa0060770:CDS |
| AAGCCGTCTTCACCCAACCC+GGG | 0.642912 | 1_2:-18633546 | None:intergenic |
| ACTATTGCTGTCGTTACCGG+TGG | 0.647178 | 1_2:+18631501 | Msa0060770:CDS |
| TGGTTGCAGGAAAATTATGG+TGG | 0.649893 | 1_2:+18631708 | Msa0060770:CDS |
| CTTATACAAGGCTTATGGCG+AGG | 0.650044 | 1_2:+18633473 | Msa0060770:CDS |
| GAATAACCAATGTAGCCTTG+AGG | 0.657120 | 1_2:+18633299 | Msa0060770:CDS |
| GAAGCTGGACATCAGGTGGG+TGG | 0.658112 | 1_2:+18633404 | Msa0060770:CDS |
| CTGCATATAAATGGGTAAGG+CGG | 0.662103 | 1_2:+18631107 | Msa0060770:exon |
| TCTGCTATGCCATAACACCA+TGG | 0.691243 | 1_2:-18633725 | None:intergenic |
| TTGACGTTAGGTCGAGTGAG+GGG | 0.713248 | 1_2:+18630947 | Msa0060770:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAAAAAATTATTAATGT+TGG | - | chr1_2:18633070-18633089 | None:intergenic | 10.0% |
| !! | TAAAAAAGTTTGATTCTAAA+AGG | + | chr1_2:18631001-18631020 | Msa0060770:five_prime_UTR | 15.0% |
| !! | AATAAACAATTTCAAATTCA+TGG | + | chr1_2:18631025-18631044 | Msa0060770:five_prime_UTR | 15.0% |
| !!! | GATTTTAGAATAATTGATTT+TGG | - | chr1_2:18631371-18631390 | None:intergenic | 15.0% |
| !! | GTTATTGAAACAAATTATTA+CGG | + | chr1_2:18632531-18632550 | Msa0060770:CDS | 15.0% |
| !! | TTTATGTGTAAAAAATTGTT+CGG | - | chr1_2:18632788-18632807 | None:intergenic | 15.0% |
| !! | AATTATCACTGATAATTATA+TGG | - | chr1_2:18633919-18633938 | None:intergenic | 15.0% |
| !!! | AGTGATAATTTAATTCTTTT+GGG | + | chr1_2:18633929-18633948 | Msa0060770:three_prime_UTR | 15.0% |
| !! | TGTAATTATTGTAGAAATTG+AGG | + | chr1_2:18630977-18630996 | Msa0060770:five_prime_UTR | 20.0% |
| !!! | ATTTCACTTTTAAGTGTTTA+TGG | + | chr1_2:18631235-18631254 | Msa0060770:intron | 20.0% |
| !! | ATCAAAATGGATAAAAATCT+TGG | - | chr1_2:18631798-18631817 | None:intergenic | 20.0% |
| !!! | TTATCCATTTTGATTACTTT+TGG | + | chr1_2:18631804-18631823 | Msa0060770:intron | 20.0% |
| !! | AAAAACTATTAGGAAAGATT+TGG | + | chr1_2:18632202-18632221 | Msa0060770:intron | 20.0% |
| !! | AAGTTTGAGCAAAAATATAA+AGG | - | chr1_2:18632708-18632727 | None:intergenic | 20.0% |
| !!! | TTATGTCAGAAAGTAATTTT+AGG | - | chr1_2:18632978-18632997 | None:intergenic | 20.0% |
| !! | AAATGTAGAACTGATATTAA+TGG | + | chr1_2:18633259-18633278 | Msa0060770:intron | 20.0% |
| !!! | TCAAATATATACTGATTACT+CGG | + | chr1_2:18633429-18633448 | Msa0060770:CDS | 20.0% |
| !!! | CAGTGATAATTTAATTCTTT+TGG | + | chr1_2:18633928-18633947 | Msa0060770:three_prime_UTR | 20.0% |
| ! | CAATCCAAAAGTAATCAAAA+TGG | - | chr1_2:18631811-18631830 | None:intergenic | 25.0% |
| ! | TCTTTCACATTTGATCTAAA+TGG | + | chr1_2:18631895-18631914 | Msa0060770:intron | 25.0% |
| !!! | TGCTTATTTTATTCTCATGT+TGG | - | chr1_2:18631953-18631972 | None:intergenic | 25.0% |
| ! | TGAGAATAAAATAAGCATAG+TGG | + | chr1_2:18631956-18631975 | Msa0060770:intron | 25.0% |
| !! | TCTTTCCTAATAGTTTTTCT+AGG | - | chr1_2:18632200-18632219 | None:intergenic | 25.0% |
| !! | TGAACTATATATGTTGATTG+TGG | + | chr1_2:18632395-18632414 | Msa0060770:intron | 25.0% |
| ! | CTTCTAACTATTATCTTTGA+TGG | + | chr1_2:18632442-18632461 | Msa0060770:intron | 25.0% |
| !! | TAACTATTATCTTTGATGGT+AGG | + | chr1_2:18632446-18632465 | Msa0060770:intron | 25.0% |
| !!! | AGATGCATTTTTTTACTTTG+AGG | - | chr1_2:18632741-18632760 | None:intergenic | 25.0% |
| ! | AATTACTTTCTGACATAAGT+TGG | + | chr1_2:18632980-18632999 | Msa0060770:intron | 25.0% |
| !! | TTTTTACAACAAGTAGAAGA+TGG | + | chr1_2:18633382-18633401 | Msa0060770:CDS | 25.0% |
| ! | GAGTAATCAGTATATATTTG+AGG | - | chr1_2:18633430-18633449 | None:intergenic | 25.0% |
| ! | TTTCCTAACCTTATTATCAT+TGG | - | chr1_2:18633837-18633856 | None:intergenic | 25.0% |
| AAGTGCTTTATATTGACGTT+AGG | + | chr1_2:18630935-18630954 | Msa0060770:five_prime_UTR | 30.0% | |
| ! | AGAAAGTTTTGCACTTATAG+CGG | + | chr1_2:18631059-18631078 | Msa0060770:five_prime_UTR | 30.0% |
| TTGCTTCACTGCATATAAAT+GGG | + | chr1_2:18631099-18631118 | Msa0060770:exon | 30.0% | |
| TTGAAGAGATTAACCTTCTA+AGG | + | chr1_2:18631169-18631188 | Msa0060770:CDS | 30.0% | |
| AATAAGGAATAGACCTTAGA+AGG | - | chr1_2:18631185-18631204 | None:intergenic | 30.0% | |
| GCAAAATAGATTGATACCTT+TGG | - | chr1_2:18631215-18631234 | None:intergenic | 30.0% | |
| GAAATTCCATAAACCATACA+AGG | - | chr1_2:18631409-18631428 | None:intergenic | 30.0% | |
| CGAAAAATTAGAAAAAGCTC+CGG | - | chr1_2:18631445-18631464 | None:intergenic | 30.0% | |
| ! | CGTCAATTTTGAATACATGT+AGG | + | chr1_2:18631463-18631482 | Msa0060770:intron | 30.0% |
| ! | CAATTTTGAATACATGTAGG+TGG | + | chr1_2:18631466-18631485 | Msa0060770:intron | 30.0% |
| TTATGGTGGTTTAGATATTC+TGG | + | chr1_2:18631722-18631741 | Msa0060770:CDS | 30.0% | |
| ATGACTATATTAGAGAGAGT+TGG | + | chr1_2:18632033-18632052 | Msa0060770:intron | 30.0% | |
| TGACTATATTAGAGAGAGTT+GGG | + | chr1_2:18632034-18632053 | Msa0060770:intron | 30.0% | |
| GAAGACCTAGAAAAACTATT+AGG | + | chr1_2:18632192-18632211 | Msa0060770:intron | 30.0% | |
| TTCTATCATACACCATGTTT+CGG | - | chr1_2:18632244-18632263 | None:intergenic | 30.0% | |
| TGGTGTATGATAGAACATTA+TGG | + | chr1_2:18632249-18632268 | Msa0060770:intron | 30.0% | |
| ! | CTGGTGTTAATTTCAATCTT+GGG | + | chr1_2:18632478-18632497 | Msa0060770:CDS | 30.0% |
| ! | CATCTCACTGTCATATTTTT+GGG | + | chr1_2:18632756-18632775 | Msa0060770:intron | 30.0% |
| ! | ATTTTCCCCTCTATTTCATA+GGG | - | chr1_2:18632920-18632939 | None:intergenic | 30.0% |
| AGGTGATAAGCTAATAGAAA+GGG | - | chr1_2:18632958-18632977 | None:intergenic | 30.0% | |
| TAGGTGATAAGCTAATAGAA+AGG | - | chr1_2:18632959-18632978 | None:intergenic | 30.0% | |
| AGTCTGAATTACATATGTTG+TGG | + | chr1_2:18633037-18633056 | Msa0060770:intron | 30.0% | |
| TAATGTCAAGTTTCTTTCAG+AGG | + | chr1_2:18633333-18633352 | Msa0060770:CDS | 30.0% | |
| ATAAGCATTAACAGCAAGTT+TGG | - | chr1_2:18633458-18633477 | None:intergenic | 30.0% | |
| ! | TTGCTGTTAATGCTTATACA+AGG | + | chr1_2:18633461-18633480 | Msa0060770:CDS | 30.0% |
| TAATGCTTATACAAGGCTTA+TGG | + | chr1_2:18633468-18633487 | Msa0060770:CDS | 30.0% | |
| AGCAGTTAACAAAAATCTTC+TGG | - | chr1_2:18633522-18633541 | None:intergenic | 30.0% | |
| AAAAACTTCCCATAACTGTT+TGG | - | chr1_2:18633645-18633664 | None:intergenic | 30.0% | |
| ! | GAAAGTTTTGCACTTATAGC+GGG | + | chr1_2:18631060-18631079 | Msa0060770:five_prime_UTR | 35.0% |
| ! | AAAGTTTTGCACTTATAGCG+GGG | + | chr1_2:18631061-18631080 | Msa0060770:five_prime_UTR | 35.0% |
| GTTGCTTCACTGCATATAAA+TGG | + | chr1_2:18631098-18631117 | Msa0060770:exon | 35.0% | |
| TCACTGCATATAAATGGGTA+AGG | + | chr1_2:18631104-18631123 | Msa0060770:exon | 35.0% | |
| ! | AGATTGATACCTTTGGTGAT+CGG | - | chr1_2:18631208-18631227 | None:intergenic | 35.0% |
| TAGCAAGTGTTCACTATACT+GGG | - | chr1_2:18631331-18631350 | None:intergenic | 35.0% | |
| TTAGCAAGTGTTCACTATAC+TGG | - | chr1_2:18631332-18631351 | None:intergenic | 35.0% | |
| !! | TTGTTCTGAAGTTCCTTGTA+TGG | + | chr1_2:18631393-18631412 | Msa0060770:intron | 35.0% |
| GAAGTTCCTTGTATGGTTTA+TGG | + | chr1_2:18631400-18631419 | Msa0060770:intron | 35.0% | |
| AATTTCAAACCACTCTTGTC+CGG | + | chr1_2:18631423-18631442 | Msa0060770:intron | 35.0% | |
| ! | TTTTGAATACATGTAGGTGG+TGG | + | chr1_2:18631469-18631488 | Msa0060770:intron | 35.0% |
| ! | GAATTGGGTTTGAGATTTGT+AGG | + | chr1_2:18631532-18631551 | Msa0060770:CDS | 35.0% |
| ! | TGAATCAATTAGGGTTTTGC+AGG | + | chr1_2:18631614-18631633 | Msa0060770:CDS | 35.0% |
| ! | AAATAAGCATAGTGGAGATG+AGG | + | chr1_2:18631964-18631983 | Msa0060770:intron | 35.0% |
| GACTATATTAGAGAGAGTTG+GGG | + | chr1_2:18632035-18632054 | Msa0060770:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGA+TGG | + | chr1_2:18632059-18632078 | Msa0060770:intron | 35.0% | |
| ACCTATAGTAGAAAAGATGG+TGG | + | chr1_2:18632062-18632081 | Msa0060770:intron | 35.0% | |
| ! | TCCACCATCTTTTCTACTAT+AGG | - | chr1_2:18632066-18632085 | None:intergenic | 35.0% |
| CACCTATAGATTCTGTAGTA+AGG | + | chr1_2:18632120-18632139 | Msa0060770:intron | 35.0% | |
| CTCCTTACTACAGAATCTAT+AGG | - | chr1_2:18632125-18632144 | None:intergenic | 35.0% | |
| TGATCGTAACATTGTGAACA+TGG | + | chr1_2:18632335-18632354 | Msa0060770:intron | 35.0% | |
| GTGAACATGGAATTAAACAC+AGG | + | chr1_2:18632348-18632367 | Msa0060770:intron | 35.0% | |
| ! | GCTGGTGTTAATTTCAATCT+TGG | + | chr1_2:18632477-18632496 | Msa0060770:CDS | 35.0% |
| ACAACGGATGGTTTCATTAA+TGG | - | chr1_2:18632585-18632604 | None:intergenic | 35.0% | |
| TTAATGAAACCATCCGTTGT+TGG | + | chr1_2:18632585-18632604 | Msa0060770:CDS | 35.0% | |
| ! | GCATCTCACTGTCATATTTT+TGG | + | chr1_2:18632755-18632774 | Msa0060770:intron | 35.0% |
| AGTAATGGCAAAACACCTTT+AGG | - | chr1_2:18632892-18632911 | None:intergenic | 35.0% | |
| TTTCATAGGGGACAAAGTAA+TGG | - | chr1_2:18632907-18632926 | None:intergenic | 35.0% | |
| TTTGTCCCCTATGAAATAGA+GGG | + | chr1_2:18632911-18632930 | Msa0060770:intron | 35.0% | |
| ! | TTTTCCCCTCTATTTCATAG+GGG | - | chr1_2:18632919-18632938 | None:intergenic | 35.0% |
| ! | CATTTTCCCCTCTATTTCAT+AGG | - | chr1_2:18632921-18632940 | None:intergenic | 35.0% |
| TGATAAGCTAATAGAAAGGG+CGG | - | chr1_2:18632955-18632974 | None:intergenic | 35.0% | |
| AAGGAATTGCAGCATTTGAA+AGG | - | chr1_2:18633123-18633142 | None:intergenic | 35.0% | |
| ACAGTTTACCACAAAGTAGA+TGG | - | chr1_2:18633188-18633207 | None:intergenic | 35.0% | |
| ! | AATAACCAATGTAGCCTTGA+GGG | + | chr1_2:18633300-18633319 | Msa0060770:CDS | 35.0% |
| ! | TTTTGTTAACTGCTATTGCC+CGG | + | chr1_2:18633528-18633547 | Msa0060770:CDS | 35.0% |
| !!! | GAAGTTTTTTTGCTGAGAGA+CGG | + | chr1_2:18633656-18633675 | Msa0060770:CDS | 35.0% |
| !!! | AAGTTTTTTTGCTGAGAGAC+GGG | + | chr1_2:18633657-18633676 | Msa0060770:CDS | 35.0% |
| TTGTGTGTGTTATAGCTTAG+CGG | + | chr1_2:18633750-18633769 | Msa0060770:three_prime_UTR | 35.0% | |
| !! | GAGTTTTATCTGGTTGTCAT+AGG | + | chr1_2:18633772-18633791 | Msa0060770:three_prime_UTR | 35.0% |
| CAAAACCTTCCCTATAAGTA+TGG | - | chr1_2:18633806-18633825 | None:intergenic | 35.0% | |
| CCTAACCTTATTATCATTGG+TGG | - | chr1_2:18633834-18633853 | None:intergenic | 35.0% | |
| CCACCAATGATAATAAGGTT+AGG | + | chr1_2:18633831-18633850 | Msa0060770:three_prime_UTR | 35.0% | |
| CTGCATATAAATGGGTAAGG+CGG | + | chr1_2:18631107-18631126 | Msa0060770:exon | 40.0% | |
| TTCCTTATTCCGATCACCAA+AGG | + | chr1_2:18631196-18631215 | Msa0060770:CDS | 40.0% | |
| ! | TACCTTTGGTGATCGGAATA+AGG | - | chr1_2:18631201-18631220 | None:intergenic | 40.0% |
| AGCAAGTGTTCACTATACTG+GGG | - | chr1_2:18631330-18631349 | None:intergenic | 40.0% | |
| GAAACTATTGCTGTCGTTAC+CGG | + | chr1_2:18631498-18631517 | Msa0060770:CDS | 40.0% | |
| ACATCAAGAGATGCTAATGC+TGG | + | chr1_2:18631588-18631607 | Msa0060770:CDS | 40.0% | |
| ! | ATGCTGGTGCTGAATCAATT+AGG | + | chr1_2:18631604-18631623 | Msa0060770:CDS | 40.0% |
| ! | TGCTGGTGCTGAATCAATTA+GGG | + | chr1_2:18631605-18631624 | Msa0060770:CDS | 40.0% |
| ! | TCAATTAGGGTTTTGCAGGA+AGG | + | chr1_2:18631618-18631637 | Msa0060770:CDS | 40.0% |
| CAGTGGTTGCAGGAAAATTA+TGG | + | chr1_2:18631705-18631724 | Msa0060770:CDS | 40.0% | |
| TGGTTGCAGGAAAATTATGG+TGG | + | chr1_2:18631708-18631727 | Msa0060770:CDS | 40.0% | |
| TGGATAGATTACAACAGCAC+AGG | - | chr1_2:18631778-18631797 | None:intergenic | 40.0% | |
| ATCTAAATGGAACAGAGTGC+TGG | + | chr1_2:18631908-18631927 | Msa0060770:intron | 40.0% | |
| GTGGTAAGACTAGATGAGAT+AGG | + | chr1_2:18632003-18632022 | Msa0060770:intron | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr1_2:18632136-18632155 | Msa0060770:intron | 40.0% | |
| TAGTGAGTTGTACCGAAACA+TGG | + | chr1_2:18632229-18632248 | Msa0060770:intron | 40.0% | |
| ! | AAGCCTTTTCCCACTAATTG+GGG | - | chr1_2:18632298-18632317 | None:intergenic | 40.0% |
| ! | CAAGCCTTTTCCCACTAATT+GGG | - | chr1_2:18632299-18632318 | None:intergenic | 40.0% |
| TGATGGTAGGTAAACAATGC+TGG | + | chr1_2:18632459-18632478 | Msa0060770:intron | 40.0% | |
| TACAATTCGAGCACCAACAA+CGG | - | chr1_2:18632601-18632620 | None:intergenic | 40.0% | |
| GTAAATGTAAGCTCACGTCT+AGG | + | chr1_2:18632618-18632637 | Msa0060770:CDS | 40.0% | |
| TCTAATGGCATATCGCCTAA+AGG | + | chr1_2:18632874-18632893 | Msa0060770:intron | 40.0% | |
| CTTTGTCCCCTATGAAATAG+AGG | + | chr1_2:18632910-18632929 | Msa0060770:intron | 40.0% | |
| TTGTCCCCTATGAAATAGAG+GGG | + | chr1_2:18632912-18632931 | Msa0060770:intron | 40.0% | |
| ATAAGCTAATAGAAAGGGCG+GGG | - | chr1_2:18632953-18632972 | None:intergenic | 40.0% | |
| GATAAGCTAATAGAAAGGGC+GGG | - | chr1_2:18632954-18632973 | None:intergenic | 40.0% | |
| !! | CATCTCTAGAGTATGCTAGA+AGG | - | chr1_2:18633142-18633161 | None:intergenic | 40.0% |
| TCACTAGACCATCTACTTTG+TGG | + | chr1_2:18633177-18633196 | Msa0060770:intron | 40.0% | |
| !! | TTTGATTGCGCGTCATTTTG+TGG | + | chr1_2:18633221-18633240 | Msa0060770:intron | 40.0% |
| ! | GAATAACCAATGTAGCCTTG+AGG | + | chr1_2:18633299-18633318 | Msa0060770:CDS | 40.0% |
| TTTCAGAGGAACTGATTGAC+AGG | + | chr1_2:18633347-18633366 | Msa0060770:CDS | 40.0% | |
| AACAAGTAGAAGATGGAAGC+TGG | + | chr1_2:18633389-18633408 | Msa0060770:CDS | 40.0% | |
| ! | ACAAAAATCTTCTGGCCTTC+TGG | - | chr1_2:18633514-18633533 | None:intergenic | 40.0% |
| TTTGTTAACTGCTATTGCCC+GGG | + | chr1_2:18633529-18633548 | Msa0060770:CDS | 40.0% | |
| TGCAGGAAACAATACTGTTG+AGG | + | chr1_2:18633579-18633598 | Msa0060770:CDS | 40.0% | |
| GGAAACAATACTGTTGAGGA+AGG | + | chr1_2:18633583-18633602 | Msa0060770:CDS | 40.0% | |
| AACTGTTTGGTCATGCAGAA+GGG | - | chr1_2:18633632-18633651 | None:intergenic | 40.0% | |
| TAACTGTTTGGTCATGCAGA+AGG | - | chr1_2:18633633-18633652 | None:intergenic | 40.0% | |
| TCTGCATGACCAAACAGTTA+TGG | + | chr1_2:18633633-18633652 | Msa0060770:CDS | 40.0% | |
| CTGCATGACCAAACAGTTAT+GGG | + | chr1_2:18633634-18633653 | Msa0060770:CDS | 40.0% | |
| !! | TAGCTTAGCGGAGTTTTATC+TGG | + | chr1_2:18633762-18633781 | Msa0060770:three_prime_UTR | 40.0% |
| TTTATCTGGTTGTCATAGGC+TGG | + | chr1_2:18633776-18633795 | Msa0060770:three_prime_UTR | 40.0% | |
| GCTGGAACACCATACTTATA+GGG | + | chr1_2:18633794-18633813 | Msa0060770:three_prime_UTR | 40.0% | |
| GAACACCATACTTATAGGGA+AGG | + | chr1_2:18633798-18633817 | Msa0060770:three_prime_UTR | 40.0% | |
| TGCGACCACCAATGATAATA+AGG | + | chr1_2:18633826-18633845 | Msa0060770:three_prime_UTR | 40.0% | |
| TATTGACGTTAGGTCGAGTG+AGG | + | chr1_2:18630945-18630964 | Msa0060770:five_prime_UTR | 45.0% | |
| ATTGACGTTAGGTCGAGTGA+GGG | + | chr1_2:18630946-18630965 | Msa0060770:five_prime_UTR | 45.0% | |
| ! | ATAGCGGGGAATAGTGATTC+TGG | + | chr1_2:18631075-18631094 | Msa0060770:five_prime_UTR | 45.0% |
| TAGCGGGGAATAGTGATTCT+GGG | + | chr1_2:18631076-18631095 | Msa0060770:five_prime_UTR | 45.0% | |
| ACCGGTGGAAATAGAGGAAT+TGG | + | chr1_2:18631516-18631535 | Msa0060770:CDS | 45.0% | |
| CCCAATTCCTCTATTTCCAC+CGG | - | chr1_2:18631520-18631539 | None:intergenic | 45.0% | |
| CCGGTGGAAATAGAGGAATT+GGG | + | chr1_2:18631517-18631536 | Msa0060770:CDS | 45.0% | |
| !! | TGTAGGCAACTTGCTACTCA+TGG | + | chr1_2:18631549-18631568 | Msa0060770:CDS | 45.0% |
| ! | ATTAGGGTTTTGCAGGAAGG+TGG | + | chr1_2:18631621-18631640 | Msa0060770:CDS | 45.0% |
| CCACTGAACAAAGTGGTTGA+TGG | - | chr1_2:18631691-18631710 | None:intergenic | 45.0% | |
| CCATCAACCACTTTGTTCAG+TGG | + | chr1_2:18631688-18631707 | Msa0060770:CDS | 45.0% | |
| GATTACAACAGCACAGGCTA+TGG | - | chr1_2:18631772-18631791 | None:intergenic | 45.0% | |
| ACTAATTGGGGTCAGCTACA+TGG | - | chr1_2:18632286-18632305 | None:intergenic | 45.0% | |
| ATGTAGCTGACCCCAATTAG+TGG | + | chr1_2:18632285-18632304 | Msa0060770:intron | 45.0% | |
| TGTAGCTGACCCCAATTAGT+GGG | + | chr1_2:18632286-18632305 | Msa0060770:intron | 45.0% | |
| TGACCCCAATTAGTGGGAAA+AGG | + | chr1_2:18632292-18632311 | Msa0060770:intron | 45.0% | |
| ! | CCAAGCCTTTTCCCACTAAT+TGG | - | chr1_2:18632300-18632319 | None:intergenic | 45.0% |
| CCAATTAGTGGGAAAAGGCT+TGG | + | chr1_2:18632297-18632316 | Msa0060770:intron | 45.0% | |
| CTCTGTTGAAAATGCTCGCA+AGG | + | chr1_2:18632509-18632528 | Msa0060770:CDS | 45.0% | |
| TCACGTCTAGGTCGACTAAA+TGG | + | chr1_2:18632630-18632649 | Msa0060770:CDS | 45.0% | |
| CACGTCTAGGTCGACTAAAT+GGG | + | chr1_2:18632631-18632650 | Msa0060770:CDS | 45.0% | |
| GTAGCCGATAGTTAAAGCAG+CGG | + | chr1_2:18632847-18632866 | Msa0060770:intron | 45.0% | |
| ! | GTGACCGCTGCTTTAACTAT+CGG | - | chr1_2:18632854-18632873 | None:intergenic | 45.0% |
| TAAAGCAGCGGTCACTCTAA+TGG | + | chr1_2:18632859-18632878 | Msa0060770:intron | 45.0% | |
| TAGAGGGGAAAATGTACTCC+TGG | + | chr1_2:18632927-18632946 | Msa0060770:intron | 45.0% | |
| ATTACTCAGTTGCTCCCTCA+AGG | - | chr1_2:18633317-18633336 | None:intergenic | 45.0% | |
| CTTATACAAGGCTTATGGCG+AGG | + | chr1_2:18633473-18633492 | Msa0060770:CDS | 45.0% | |
| !! | ACGGCTTTAACAGGTTTTGC+AGG | + | chr1_2:18633562-18633581 | Msa0060770:CDS | 45.0% |
| AAGGAGCTGATACTGGAGTA+TGG | + | chr1_2:18633602-18633621 | Msa0060770:CDS | 45.0% | |
| TAACACCATGGCATTGCTCA+TGG | - | chr1_2:18633716-18633735 | None:intergenic | 45.0% | |
| ! | TGAGCAATGCCATGGTGTTA+TGG | + | chr1_2:18633716-18633735 | Msa0060770:three_prime_UTR | 45.0% |
| TCTGCTATGCCATAACACCA+TGG | - | chr1_2:18633728-18633747 | None:intergenic | 45.0% | |
| GGCTGGAACACCATACTTAT+AGG | + | chr1_2:18633793-18633812 | Msa0060770:three_prime_UTR | 45.0% | |
| !! | TACTGCTGTTAGTTTGCTGC+TGG | + | chr1_2:18633875-18633894 | Msa0060770:three_prime_UTR | 45.0% |
| !! | ACTGCTGTTAGTTTGCTGCT+GGG | + | chr1_2:18633876-18633895 | Msa0060770:three_prime_UTR | 45.0% |
| TTGACGTTAGGTCGAGTGAG+GGG | + | chr1_2:18630947-18630966 | Msa0060770:five_prime_UTR | 50.0% | |
| AATGGGTAAGGCGGAGAAGA+AGG | + | chr1_2:18631116-18631135 | Msa0060770:exon | 50.0% | |
| TAAGGCGGAGAAGAAGGAGA+AGG | + | chr1_2:18631122-18631141 | Msa0060770:CDS | 50.0% | |
| GAAAAAGCTCCGGACAAGAG+TGG | - | chr1_2:18631435-18631454 | None:intergenic | 50.0% | |
| ACTATTGCTGTCGTTACCGG+TGG | + | chr1_2:18631501-18631520 | Msa0060770:CDS | 50.0% | |
| GTCGTTACCGGTGGAAATAG+AGG | + | chr1_2:18631510-18631529 | Msa0060770:CDS | 50.0% | |
| ! | GGTTTTGCAGGAAGGTGGTT+TGG | + | chr1_2:18631626-18631645 | Msa0060770:CDS | 50.0% |
| CCTGCAACCACTGAACAAAG+TGG | - | chr1_2:18631698-18631717 | None:intergenic | 50.0% | |
| CCACTTTGTTCAGTGGTTGC+AGG | + | chr1_2:18631695-18631714 | Msa0060770:CDS | 50.0% | |
| TGGAGATGAGGATGTTGCGT+TGG | + | chr1_2:18631976-18631995 | Msa0060770:intron | 50.0% | |
| AGGATGTTGCGTTGGATGTG+TGG | + | chr1_2:18631984-18632003 | Msa0060770:intron | 50.0% | |
| CTCTGTCTCTAGCGATCTGA+CGG | - | chr1_2:18632172-18632191 | None:intergenic | 50.0% | |
| ATTCGAGCACCAACAACGGA+TGG | - | chr1_2:18632597-18632616 | None:intergenic | 50.0% | |
| TTGCTCCCTCAAGGCTACAT+TGG | - | chr1_2:18633308-18633327 | None:intergenic | 50.0% | |
| GAAGATGGAAGCTGGACATC+AGG | + | chr1_2:18633397-18633416 | Msa0060770:CDS | 50.0% | |
| ATGGAAGCTGGACATCAGGT+GGG | + | chr1_2:18633401-18633420 | Msa0060770:CDS | 50.0% | |
| AAGCTTTCTGAGCGACCAGA+AGG | + | chr1_2:18633496-18633515 | Msa0060770:CDS | 50.0% | |
| TTAACTGCTATTGCCCGGGT+TGG | + | chr1_2:18633533-18633552 | Msa0060770:CDS | 50.0% | |
| TAACTGCTATTGCCCGGGTT+GGG | + | chr1_2:18633534-18633553 | Msa0060770:CDS | 50.0% | |
| ! | TGGGTGAAGACGGCTTTAAC+AGG | + | chr1_2:18633553-18633572 | Msa0060770:CDS | 50.0% |
| GTTGAGGAAGGAGCTGATAC+TGG | + | chr1_2:18633595-18633614 | Msa0060770:CDS | 50.0% | |
| ! | GCAGGAAGGTGGTTTGGATG+TGG | + | chr1_2:18631632-18631651 | Msa0060770:CDS | 55.0% |
| !! | GAACAGAGTGCTGGCTTGCT+GGG | + | chr1_2:18631917-18631936 | Msa0060770:intron | 55.0% |
| CGTCAGATCGCTAGAGACAG+AGG | + | chr1_2:18632170-18632189 | Msa0060770:intron | 55.0% | |
| GATGGAAGCTGGACATCAGG+TGG | + | chr1_2:18633400-18633419 | Msa0060770:CDS | 55.0% | |
| AAAGCCGTCTTCACCCAACC+CGG | - | chr1_2:18633550-18633569 | None:intergenic | 55.0% | |
| AGCAGCCATGAGCAATGCCA+TGG | + | chr1_2:18633708-18633727 | Msa0060770:three_prime_UTR | 55.0% | |
| !! | GGAACAGAGTGCTGGCTTGC+TGG | + | chr1_2:18631916-18631935 | Msa0060770:intron | 60.0% |
| CTAATAGAAAGGGCGGGGCC+AGG | - | chr1_2:18632948-18632967 | None:intergenic | 60.0% | |
| GAAGCTGGACATCAGGTGGG+TGG | + | chr1_2:18633404-18633423 | Msa0060770:CDS | 60.0% | |
| ! | TTGCCCGGGTTGGGTGAAGA+CGG | + | chr1_2:18633543-18633562 | Msa0060770:CDS | 60.0% |
| AAGCCGTCTTCACCCAACCC+GGG | - | chr1_2:18633549-18633568 | None:intergenic | 60.0% | |
| !! | CAGAGTGCTGGCTTGCTGGG+CGG | + | chr1_2:18631920-18631939 | Msa0060770:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18630912 | 18633969 | 18630912 | ID=Msa0060770;Name=Msa0060770 |
| chr1_2 | mRNA | 18630912 | 18633969 | 18630912 | ID=Msa0060770-mRNA-1;Parent=Msa0060770;Name=Msa0060770-mRNA-1;_AED=0.04;_eAED=0.04;_QI=205|1|1|1|1|1|4|276|316 |
| chr1_2 | exon | 18630912 | 18631217 | 18630912 | ID=Msa0060770-mRNA-1:exon:7213;Parent=Msa0060770-mRNA-1 |
| chr1_2 | exon | 18631485 | 18631743 | 18631485 | ID=Msa0060770-mRNA-1:exon:7214;Parent=Msa0060770-mRNA-1 |
| chr1_2 | exon | 18632468 | 18632662 | 18632468 | ID=Msa0060770-mRNA-1:exon:7215;Parent=Msa0060770-mRNA-1 |
| chr1_2 | exon | 18633298 | 18633969 | 18633298 | ID=Msa0060770-mRNA-1:exon:7216;Parent=Msa0060770-mRNA-1 |
| chr1_2 | five_prime_UTR | 18630912 | 18631116 | 18630912 | ID=Msa0060770-mRNA-1:five_prime_utr;Parent=Msa0060770-mRNA-1 |
| chr1_2 | CDS | 18631117 | 18631217 | 18631117 | ID=Msa0060770-mRNA-1:cds;Parent=Msa0060770-mRNA-1 |
| chr1_2 | CDS | 18631485 | 18631743 | 18631485 | ID=Msa0060770-mRNA-1:cds;Parent=Msa0060770-mRNA-1 |
| chr1_2 | CDS | 18632468 | 18632662 | 18632468 | ID=Msa0060770-mRNA-1:cds;Parent=Msa0060770-mRNA-1 |
| chr1_2 | CDS | 18633298 | 18633693 | 18633298 | ID=Msa0060770-mRNA-1:cds;Parent=Msa0060770-mRNA-1 |
| chr1_2 | three_prime_UTR | 18633694 | 18633969 | 18633694 | ID=Msa0060770-mRNA-1:three_prime_utr;Parent=Msa0060770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
