Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156460 | XP_013467105.1 | 94.963 | 536 | 23 | 1 | 1 | 532 | 1 | 536 | 0.0 | 1000 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156460 | sp|Q9FIY7|SM3L3_ARATH | 48.387 | 372 | 160 | 9 | 166 | 532 | 340 | 684 | 1.96e-102 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156460 | A0A072VHP2 | 94.963 | 536 | 23 | 1 | 1 | 532 | 1 | 536 | 0.0 | 1000 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005020 | Msa0156460 | 0.829317 | 5.507764e-55 | -8.615850e-47 |
| Msa0016040 | Msa0156460 | 0.817984 | 2.483189e-52 | -8.615850e-47 |
| Msa0019930 | Msa0156460 | 0.824973 | 6.038111e-54 | -8.615850e-47 |
| Msa0020540 | Msa0156460 | 0.849032 | 4.195039e-60 | -8.615850e-47 |
| Msa0053070 | Msa0156460 | 0.844742 | 6.260922e-59 | -8.615850e-47 |
| Msa0062340 | Msa0156460 | 0.830832 | 2.351511e-55 | -8.615850e-47 |
| Msa0068150 | Msa0156460 | 0.816104 | 6.567169e-52 | -8.615850e-47 |
| Msa0074360 | Msa0156460 | 0.820980 | 5.147991e-53 | -8.615850e-47 |
| Msa0077560 | Msa0156460 | 0.802141 | 6.458275e-49 | -8.615850e-47 |
| Msa0098410 | Msa0156460 | 0.841332 | 5.065739e-58 | -8.615850e-47 |
| Msa0110200 | Msa0156460 | 0.821345 | 4.241555e-53 | -8.615850e-47 |
| Msa0123320 | Msa0156460 | 0.806713 | 7.197262e-50 | -8.615850e-47 |
| Msa0140380 | Msa0156460 | 0.803453 | 3.461254e-49 | -8.615850e-47 |
| Msa0156460 | Msa0156510 | 0.950703 | 9.513234e-109 | -8.615850e-47 |
| Msa0156460 | Msa0159590 | 0.849779 | 2.597592e-60 | -8.615850e-47 |
| Msa0156460 | Msa0159620 | 0.861290 | 1.138107e-63 | -8.615850e-47 |
| Msa0156460 | Msa0166170 | 0.801074 | 1.068701e-48 | -8.615850e-47 |
| Msa0156460 | Msa0213030 | 0.803224 | 3.860427e-49 | -8.615850e-47 |
| Msa0156460 | Msa0232760 | 0.807638 | 4.583205e-50 | -8.615850e-47 |
| Msa0156460 | Msa0269210 | 0.815482 | 9.038096e-52 | -8.615850e-47 |
| Msa0156460 | Msa0298580 | 0.837788 | 4.228295e-57 | -8.615850e-47 |
| Msa0156460 | Msa0343010 | 0.816040 | 6.788107e-52 | -8.615850e-47 |
| Msa0156460 | Msa0367150 | 0.825438 | 4.686402e-54 | -8.615850e-47 |
| Msa0156460 | Msa0367520 | 0.803724 | 3.040806e-49 | -8.615850e-47 |
| Msa0156460 | Msa0373170 | 0.815438 | 9.242656e-52 | -8.615850e-47 |
| Msa0156460 | Msa0373500 | 0.830979 | 2.164630e-55 | -8.615850e-47 |
| Msa0156460 | Msa0373590 | 0.818031 | 2.423775e-52 | -8.615850e-47 |
| Msa0156460 | Msa0382230 | 0.812696 | 3.722421e-51 | -8.615850e-47 |
| Msa0156460 | Msa0416160 | 0.808079 | 3.694100e-50 | -8.615850e-47 |
| Msa0156460 | Msa0421150 | 0.807362 | 5.244621e-50 | -8.615850e-47 |
| Msa0156460 | Msa0421750 | 0.836036 | 1.184180e-56 | -8.615850e-47 |
| Msa0156460 | Msa0433150 | 0.803834 | 2.885198e-49 | -8.615850e-47 |
| Msa0156460 | Msa0454560 | 0.812065 | 5.112953e-51 | -8.615850e-47 |
| Msa0156460 | Msa0456670 | 0.816990 | 4.158974e-52 | -8.615850e-47 |
| Msa0156460 | Msa0459740 | 0.833115 | 6.419371e-56 | -8.615850e-47 |
| Msa0156460 | Msa0467690 | 0.821978 | 3.028998e-53 | -8.615850e-47 |
| Msa0156460 | Msa0468620 | 0.812898 | 3.363016e-51 | -8.615850e-47 |
| Msa0156460 | Msa0477630 | 0.804288 | 2.321472e-49 | -8.615850e-47 |
| Msa0156460 | Msa0481890 | 0.830703 | 2.529543e-55 | -8.615850e-47 |
| Msa0156460 | Msa0502510 | 0.801182 | 1.015903e-48 | -8.615850e-47 |
| Msa0156460 | Msa0513620 | 0.804242 | 2.373079e-49 | -8.615850e-47 |
| Msa0156460 | Msa0514020 | 0.836912 | 7.084040e-57 | -8.615850e-47 |
| Msa0156460 | Msa0514500 | 0.813915 | 2.010014e-51 | -8.615850e-47 |
| Msa0156460 | Msa0520680 | 0.809548 | 1.791729e-50 | -8.615850e-47 |
| Msa0156460 | Msa0521680 | 0.808027 | 3.789247e-50 | -8.615850e-47 |
| Msa0156460 | Msa0532160 | 0.811509 | 6.757410e-51 | -8.615850e-47 |
| Msa0156460 | Msa0545920 | 0.824824 | 6.546126e-54 | -8.615850e-47 |
| Msa0156460 | Msa0550590 | 0.805453 | 1.325384e-49 | -8.615850e-47 |
| Msa0156460 | Msa0561560 | 0.822779 | 1.973160e-53 | -8.615850e-47 |
| Msa0156460 | Msa0563900 | 0.820404 | 6.983751e-53 | -8.615850e-47 |
| Msa0156460 | Msa0572830 | 0.839147 | 1.885696e-57 | -8.615850e-47 |
| Msa0156460 | Msa0577280 | 0.842216 | 2.961272e-58 | -8.615850e-47 |
| Msa0156460 | Msa0577330 | 0.843057 | 1.770498e-58 | -8.615850e-47 |
| Msa0156460 | Msa0590200 | 0.833171 | 6.217679e-56 | -8.615850e-47 |
| Msa0156460 | Msa0601720 | 0.824342 | 8.503326e-54 | -8.615850e-47 |
| Msa0156460 | Msa0606100 | 0.835582 | 1.543200e-56 | -8.615850e-47 |
| Msa0156460 | Msa0607800 | 0.848180 | 7.224239e-60 | -8.615850e-47 |
| Msa0156460 | Msa0615630 | 0.854072 | 1.569525e-61 | -8.615850e-47 |
| Msa0156460 | Msa0620500 | 0.829584 | 4.744622e-55 | -8.615850e-47 |
| Msa0156460 | Msa0621710 | 0.826232 | 3.037457e-54 | -8.615850e-47 |
| Msa0156460 | Msa0622920 | 0.842524 | 2.453518e-58 | -8.615850e-47 |
| Msa0156460 | Msa0641990 | 0.820283 | 7.443407e-53 | -8.615850e-47 |
| Msa0156460 | Msa0647050 | 0.815246 | 1.019831e-51 | -8.615850e-47 |
| Msa0156460 | Msa0648040 | 0.844533 | 7.128447e-59 | -8.615850e-47 |
| Msa0156460 | Msa0654740 | 0.810134 | 1.340615e-50 | -8.615850e-47 |
| Msa0156460 | Msa0666700 | 0.800556 | 1.363338e-48 | -8.615850e-47 |
| Msa0156460 | Msa0668900 | 0.827590 | 1.438330e-54 | -8.615850e-47 |
| Msa0156460 | Msa0681050 | 0.824817 | 6.571027e-54 | -8.615850e-47 |
| Msa0156460 | Msa0688380 | 0.805422 | 1.345413e-49 | -8.615850e-47 |
| Msa0156460 | Msa0690740 | 0.850070 | 2.153351e-60 | -8.615850e-47 |
| Msa0156460 | Msa0698730 | 0.819899 | 9.113946e-53 | -8.615850e-47 |
| Msa0156460 | Msa0703600 | 0.803834 | 2.884801e-49 | -8.615850e-47 |
| Msa0156460 | Msa0707260 | 0.818838 | 1.590180e-52 | -8.615850e-47 |
| Msa0156460 | Msa0709200 | 0.805636 | 1.212897e-49 | -8.615850e-47 |
| Msa0156460 | Msa0709440 | 0.828810 | 7.310340e-55 | -8.615850e-47 |
| Msa0156460 | Msa0714520 | 0.806599 | 7.607645e-50 | -8.615850e-47 |
| Msa0156460 | Msa0714790 | 0.817331 | 3.485002e-52 | -8.615850e-47 |
| Msa0156460 | Msa0717830 | 0.836990 | 6.767200e-57 | -8.615850e-47 |
| Msa0156460 | Msa0717900 | 0.815826 | 7.575510e-52 | -8.615850e-47 |
| Msa0156460 | Msa0728780 | 0.804046 | 2.606692e-49 | -8.615850e-47 |
| Msa0156460 | Msa0743440 | 0.820969 | 5.179640e-53 | -8.615850e-47 |
| Msa0156460 | Msa0745720 | 0.821003 | 5.085358e-53 | -8.615850e-47 |
| Msa0156460 | Msa0747740 | 0.851545 | 8.276822e-61 | -8.615850e-47 |
| Msa0156460 | Msa0754450 | 0.803028 | 4.237673e-49 | -8.615850e-47 |
| Msa0156460 | Msa0756180 | 0.814006 | 1.919182e-51 | -8.615850e-47 |
| Msa0156460 | Msa0756820 | 0.815043 | 1.131422e-51 | -8.615850e-47 |
| Msa0156460 | Msa0758590 | 0.819622 | 1.054393e-52 | -8.615850e-47 |
| Msa0156460 | Msa0758650 | 0.808769 | 2.632457e-50 | -8.615850e-47 |
| Msa0156460 | Msa0769700 | 0.813470 | 2.518886e-51 | -8.615850e-47 |
| Msa0156460 | Msa0773630 | 0.823181 | 1.590495e-53 | -8.615850e-47 |
| Msa0156460 | Msa0800660 | 0.834655 | 2.643456e-56 | -8.615850e-47 |
| Msa0156460 | Msa0811020 | 0.819555 | 1.092061e-52 | -8.615850e-47 |
| Msa0156460 | Msa0816080 | 0.810723 | 1.000227e-50 | -8.615850e-47 |
| Msa0156460 | Msa0818880 | 0.816609 | 5.063906e-52 | -8.615850e-47 |
| Msa0156460 | Msa0837680 | 0.805298 | 1.428240e-49 | -8.615850e-47 |
| Msa0156460 | Msa0861440 | 0.807834 | 4.165771e-50 | -8.615850e-47 |
| Msa0156460 | Msa0863620 | 0.851622 | 7.870249e-61 | -8.615850e-47 |
| Msa0156460 | Msa0867110 | 0.820930 | 5.286244e-53 | -8.615850e-47 |
| Msa0156460 | Msa0888790 | 0.814341 | 1.618627e-51 | -8.615850e-47 |
| Msa0156460 | Msa0900760 | 0.821954 | 3.068348e-53 | -8.615850e-47 |
| Msa0156460 | Msa0926310 | 0.824899 | 6.284797e-54 | -8.615850e-47 |
| Msa0156460 | Msa0931310 | 0.803460 | 3.449418e-49 | -8.615850e-47 |
| Msa0156460 | Msa0931590 | 0.838386 | 2.966402e-57 | -8.615850e-47 |
| Msa0156460 | Msa0989370 | 0.829010 | 6.539564e-55 | -8.615850e-47 |
| Msa0156460 | Msa1000780 | 0.815005 | 1.153716e-51 | -8.615850e-47 |
| Msa0156460 | Msa1008670 | 0.813867 | 2.059729e-51 | -8.615850e-47 |
| Msa0156460 | Msa1033920 | 0.814465 | 1.519876e-51 | -8.615850e-47 |
| Msa0156460 | Msa1042880 | 0.822443 | 2.361998e-53 | -8.615850e-47 |
| Msa0156460 | Msa1076020 | 0.832328 | 1.006505e-55 | -8.615850e-47 |
| Msa0156460 | Msa1078880 | 0.807186 | 5.716298e-50 | -8.615850e-47 |
| Msa0156460 | Msa1082380 | 0.809409 | 1.919440e-50 | -8.615850e-47 |
| Msa0156460 | Msa1084530 | 0.835408 | 1.708004e-56 | -8.615850e-47 |
| Msa0156460 | Msa1114630 | 0.828681 | 7.851308e-55 | -8.615850e-47 |
| Msa0156460 | Msa1125820 | 0.832848 | 7.478886e-56 | -8.615850e-47 |
| Msa0156460 | Msa1125990 | 0.825291 | 5.079137e-54 | -8.615850e-47 |
| Msa0156460 | Msa1127280 | 0.848035 | 7.921298e-60 | -8.615850e-47 |
| Msa0156460 | Msa1127470 | 0.820878 | 5.435352e-53 | -8.615850e-47 |
| Msa0156460 | Msa1130420 | 0.811210 | 7.844676e-51 | -8.615850e-47 |
| Msa0156460 | Msa1132530 | 0.821870 | 3.207696e-53 | -8.615850e-47 |
| Msa0156460 | Msa1139050 | 0.823292 | 1.498620e-53 | -8.615850e-47 |
| Msa0156460 | Msa1159590 | 0.815802 | 7.670071e-52 | -8.615850e-47 |
| Msa0156460 | Msa1162880 | 0.800761 | 1.238491e-48 | -8.615850e-47 |
| Msa0156460 | Msa1163180 | 0.816615 | 5.047251e-52 | -8.615850e-47 |
| Msa0156460 | Msa1165480 | 0.841047 | 6.019903e-58 | -8.615850e-47 |
| Msa0156460 | Msa1169190 | 0.802337 | 5.885347e-49 | -8.615850e-47 |
| Msa0156460 | Msa1171290 | 0.828004 | 1.143830e-54 | -8.615850e-47 |
| Msa0156460 | Msa1183740 | 0.804989 | 1.657512e-49 | -8.615850e-47 |
| Msa0156460 | Msa1190390 | 0.805983 | 1.025688e-49 | -8.615850e-47 |
| Msa0156460 | Msa1201780 | 0.832141 | 1.119852e-55 | -8.615850e-47 |
| Msa0156460 | Msa1213830 | 0.828841 | 7.185633e-55 | -8.615850e-47 |
| Msa0156460 | Msa1214350 | 0.831981 | 1.226115e-55 | -8.615850e-47 |
| Msa0156460 | Msa1215980 | 0.829671 | 4.517111e-55 | -8.615850e-47 |
| Msa0156460 | Msa1218820 | 0.839467 | 1.557098e-57 | -8.615850e-47 |
| Msa0156460 | Msa1244240 | 0.814830 | 1.261482e-51 | -8.615850e-47 |
| Msa0156460 | Msa1254540 | 0.826884 | 2.123513e-54 | -8.615850e-47 |
| Msa0156460 | Msa1261050 | 0.818548 | 1.851091e-52 | -8.615850e-47 |
| Msa0156460 | Msa1263740 | 0.815128 | 1.083655e-51 | -8.615850e-47 |
| Msa0156460 | Msa1263780 | 0.806438 | 8.227491e-50 | -8.615850e-47 |
| Msa0156460 | Msa1263900 | 0.805371 | 1.378862e-49 | -8.615850e-47 |
| Msa0156460 | Msa1268540 | 0.803040 | 4.213924e-49 | -8.615850e-47 |
| Msa0156460 | Msa1294460 | 0.805948 | 1.043382e-49 | -8.615850e-47 |
| Msa0156460 | Msa1294790 | 0.817816 | 2.709373e-52 | -8.615850e-47 |
| Msa0156460 | Msa1300460 | 0.838556 | 2.680239e-57 | -8.615850e-47 |
| Msa0156460 | Msa1306790 | 0.805540 | 1.270442e-49 | -8.615850e-47 |
| Msa0156460 | Msa1332950 | 0.840554 | 8.108410e-58 | -8.615850e-47 |
| Msa0156460 | Msa1338210 | 0.800082 | 1.703239e-48 | -8.615850e-47 |
| Msa0156460 | Msa1339170 | 0.857388 | 1.688860e-62 | -8.615850e-47 |
| Msa0156460 | Msa1356060 | 0.829469 | 5.059070e-55 | -8.615850e-47 |
| Msa0156460 | Msa1361930 | 0.807866 | 4.099231e-50 | -8.615850e-47 |
| Msa0156460 | Msa1362130 | 0.823320 | 1.475740e-53 | -8.615850e-47 |
| Msa0156460 | Msa1365500 | 0.816081 | 6.645196e-52 | -8.615850e-47 |
| Msa0156460 | Msa1366150 | 0.826215 | 3.065215e-54 | -8.615850e-47 |
| Msa0156460 | Msa1367180 | 0.808708 | 2.711535e-50 | -8.615850e-47 |
| Msa0156460 | Msa1381470 | 0.815359 | 9.628301e-52 | -8.615850e-47 |
| Msa0156460 | Msa1387440 | 0.829841 | 4.106873e-55 | -8.615850e-47 |
| Msa0156460 | Msa1393560 | 0.841074 | 5.922289e-58 | -8.615850e-47 |
| Msa0156460 | Msa1397270 | 0.801541 | 8.575718e-49 | -8.615850e-47 |
| Msa0156460 | Msa1399190 | 0.844816 | 5.981592e-59 | -8.615850e-47 |
| Msa0156460 | Msa1426320 | 0.821342 | 4.248506e-53 | -8.615850e-47 |
| Msa0156460 | Msa1429070 | 0.800163 | 1.639644e-48 | -8.615850e-47 |
| Msa0156460 | Msa1435100 | 0.816283 | 5.989712e-52 | -8.615850e-47 |
| Msa0156460 | Msa1439730 | 0.818721 | 1.690666e-52 | -8.615850e-47 |
| Msa0156460 | Msa1445120 | 0.831557 | 1.560703e-55 | -8.615850e-47 |
| Msa0156460 | Msa1446100 | 0.818358 | 2.043366e-52 | -8.615850e-47 |
| Msa0156460 | Msa1447170 | 0.829648 | 4.575915e-55 | -8.615850e-47 |
| Msa0156460 | Msa1459010 | 0.836032 | 1.186435e-56 | -8.615850e-47 |
| Msa0156460 | Msa1465360 | 0.836988 | 6.776608e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156460 | MtrunA17_Chr1g0168031 | 94.963 | 536 | 23 | 1 | 1 | 532 | 1 | 536 | 0.0 | 1000 |
| Msa0156460 | MtrunA17_Chr2g0320751 | 33.113 | 302 | 180 | 5 | 246 | 532 | 106 | 400 | 9.19e-47 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0156460 | AT5G43530.1 | 48.387 | 372 | 160 | 9 | 166 | 532 | 340 | 684 | 2.00e-103 | 338 |
| Msa0156460 | AT5G22750.1 | 36.656 | 311 | 169 | 7 | 246 | 532 | 110 | 416 | 3.51e-55 | 201 |
Find 130 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACTACACATCAGTGTCTT+TGG | 0.248953 | 1_4:-22790506 | None:intergenic |
| CGCCGACACCGGTGTTGGTT+CGG | 0.259876 | 1_4:-22788387 | None:intergenic |
| TTATACGATGTATGCGGATT+CGG | 0.278112 | 1_4:-22789141 | None:intergenic |
| GACTACACATCAGTGTCTTT+GGG | 0.280932 | 1_4:-22790505 | None:intergenic |
| TGCATCATTTCAAGCTTATA+CGG | 0.290345 | 1_4:-22789467 | None:intergenic |
| GCATCAGACTCGTCGGAGTT+AGG | 0.316471 | 1_4:-22788442 | None:intergenic |
| TGAGCCTGGGTGGTCATTAT+TGG | 0.320846 | 1_4:+22789038 | Msa0156460:CDS |
| TGTAGAGTTCTAAAATTTGA+TGG | 0.323415 | 1_4:-22790831 | None:intergenic |
| GGTGAGTTTCCTGTTGAGCC+TGG | 0.323707 | 1_4:+22789024 | Msa0156460:CDS |
| AAGCTGTGAGTGATGAAGTT+AGG | 0.351208 | 1_4:+22788935 | Msa0156460:CDS |
| TCCTCAGTTGTTGCTGGAAG+TGG | 0.360185 | 1_4:-22790318 | None:intergenic |
| TATACGATGTATGCGGATTC+GGG | 0.368080 | 1_4:-22789140 | None:intergenic |
| TGTTCATCCTCAGTTGTTGC+TGG | 0.371403 | 1_4:-22790324 | None:intergenic |
| GCCGACACCGGTGTTGGTTC+GGG | 0.371451 | 1_4:-22788386 | None:intergenic |
| GTGATTCCTCTTGTGCAATC+TGG | 0.373109 | 1_4:+22789410 | Msa0156460:CDS |
| AGAGGCTGAGCGACGAGAAC+GGG | 0.374296 | 1_4:-22788349 | None:intergenic |
| TTTCGAGCCTTCATTTCCTC+AGG | 0.376431 | 1_4:-22790050 | None:intergenic |
| GAGCCTGGGTGGTCATTATT+GGG | 0.379945 | 1_4:+22789039 | Msa0156460:CDS |
| AGATTCATTACCTTCCTATA+TGG | 0.380304 | 1_4:-22789941 | None:intergenic |
| GGTTAAGGTTGAACCGGTTA+AGG | 0.380420 | 1_4:+22788807 | Msa0156460:CDS |
| TAACCCATTGCATATATTGT+AGG | 0.382758 | 1_4:-22790627 | None:intergenic |
| CGTGTCTCGACCAAACGTTC+TGG | 0.385149 | 1_4:+22789180 | Msa0156460:CDS |
| GGTTAAGGCTGAACCGGTTA+AGG | 0.392088 | 1_4:+22788837 | Msa0156460:CDS |
| TGATACACAGGAACCGGTTA+AGG | 0.394567 | 1_4:+22788792 | Msa0156460:CDS |
| AGCTGTGAGTGATGAAGTTA+GGG | 0.397540 | 1_4:+22788936 | Msa0156460:CDS |
| GGTTAAGGTTGAACCGGTTA+AGG | 0.399768 | 1_4:+22788822 | Msa0156460:CDS |
| AATGACCACCCAGGCTCAAC+AGG | 0.405219 | 1_4:-22789033 | None:intergenic |
| CCGAGTCTGTTGATACCTCT+TGG | 0.408392 | 1_4:+22789843 | Msa0156460:CDS |
| ATATACGTCAACATATTTAC+TGG | 0.411869 | 1_4:+22790743 | Msa0156460:CDS |
| CAAACCGGTTCAACCTTAAC+CGG | 0.413985 | 1_4:-22788850 | None:intergenic |
| TGTGCAATCTGGAAATGTTA+AGG | 0.418183 | 1_4:+22789421 | Msa0156460:CDS |
| AGGAAATAATGTTGTTAGTA+AGG | 0.421947 | 1_4:+22789489 | Msa0156460:CDS |
| GATAGTGACAGTGAAGAAAG+TGG | 0.429354 | 1_4:-22788243 | None:intergenic |
| CATCAGACTCGTCGGAGTTA+GGG | 0.434254 | 1_4:-22788441 | None:intergenic |
| TTAACCGGTTCAACCTTAAC+CGG | 0.442027 | 1_4:-22788805 | None:intergenic |
| ACCAGAGTCAAGCTCTGTAT+TGG | 0.444501 | 1_4:+22790537 | Msa0156460:CDS |
| TCAACCTCCGGCGGCGGAGA+AGG | 0.445018 | 1_4:+22788543 | Msa0156460:CDS |
| TCAGCTTTGAACAAACTTGT+TGG | 0.445273 | 1_4:+22790360 | Msa0156460:CDS |
| AGAGAAATCTACATCCTTGC+TGG | 0.445334 | 1_4:+22790600 | Msa0156460:CDS |
| TTAACCGGTTCAACCTTAAC+CGG | 0.448681 | 1_4:-22788820 | None:intergenic |
| TGAGGATGAACAAGCACTTT+CGG | 0.449645 | 1_4:+22790335 | Msa0156460:CDS |
| CTTGCCATCTGTGTTGCTTG+TGG | 0.453973 | 1_4:-22790785 | None:intergenic |
| TGGGAGGCTGCCAATGGAAT+GGG | 0.459219 | 1_4:+22789379 | Msa0156460:CDS |
| AACTCACCATCCTCAAGATT+CGG | 0.461007 | 1_4:-22789009 | None:intergenic |
| TTAACCGGTTCAGCCTTAAC+CGG | 0.471528 | 1_4:-22788835 | None:intergenic |
| TTCGAGCCTTCATTTCCTCA+GGG | 0.472305 | 1_4:-22790049 | None:intergenic |
| GGAGGTGTTGAAGGTGGTGA+AGG | 0.472966 | 1_4:+22788906 | Msa0156460:CDS |
| CCTGTCAATAAGCGAAGAAA+AGG | 0.473656 | 1_4:+22790285 | Msa0156460:CDS |
| TGATGAGGTGGAGGTGTTGA+AGG | 0.474656 | 1_4:+22788897 | Msa0156460:CDS |
| GGTTTGTGATACACAGGAAC+CGG | 0.478184 | 1_4:+22788786 | Msa0156460:CDS |
| TCCGCCACCTTCTCCGCCGC+CGG | 0.478787 | 1_4:-22788550 | None:intergenic |
| TGCTAGAGATTGAGCCATAT+AGG | 0.482526 | 1_4:+22789927 | Msa0156460:CDS |
| TAGTACCACTCCAGAACGTT+TGG | 0.482761 | 1_4:-22789190 | None:intergenic |
| GTGAGTTTCCTGTTGAGCCT+GGG | 0.483079 | 1_4:+22789025 | Msa0156460:CDS |
| TGAACCGGTTAAGGCTGAAC+CGG | 0.484926 | 1_4:+22788831 | Msa0156460:CDS |
| TTGGGAGGCTGCCAATGGAA+TGG | 0.486979 | 1_4:+22789378 | Msa0156460:CDS |
| TGAACCGGTTAAGGTTGAAC+CGG | 0.489926 | 1_4:+22788816 | Msa0156460:CDS |
| TGAACCGGTTAAGGTTGAAC+CGG | 0.489926 | 1_4:+22788846 | Msa0156460:CDS |
| ACATTTCCAGATTGCACAAG+AGG | 0.497026 | 1_4:-22789416 | None:intergenic |
| TGATGAATCGTTGAAATCAA+TGG | 0.499328 | 1_4:+22788657 | Msa0156460:CDS |
| ATTGCTACTTCTACTGCTAA+AGG | 0.502889 | 1_4:+22789075 | Msa0156460:CDS |
| CTCCACCTCATCATCGCAAA+CGG | 0.505221 | 1_4:-22788887 | None:intergenic |
| TGCTAAAGGAGTGAGGAGAT+TGG | 0.509535 | 1_4:+22789089 | Msa0156460:CDS |
| GGAACCGGTTAAGGTTGAAC+CGG | 0.509703 | 1_4:+22788801 | Msa0156460:CDS |
| CAGCCTACAATATATGCAAT+GGG | 0.512274 | 1_4:+22790624 | Msa0156460:CDS |
| ACCTCCGGCGGCGGAGAAGG+TGG | 0.514255 | 1_4:+22788546 | Msa0156460:CDS |
| GCCCGAACCAACACCGGTGT+CGG | 0.517808 | 1_4:+22788385 | Msa0156460:CDS |
| CACCGGTGTTGGTTCGGGCA+CGG | 0.521625 | 1_4:-22788381 | None:intergenic |
| GAGGTGTTGAAGGTGGTGAA+GGG | 0.522307 | 1_4:+22788907 | Msa0156460:CDS |
| TCTGGAAATGTTAAGGTTCG+AGG | 0.529804 | 1_4:+22789428 | Msa0156460:CDS |
| ATACATCGTATAAGTTTCAA+TGG | 0.530401 | 1_4:+22789151 | Msa0156460:CDS |
| TTTCACCCCTGAGGAAATGA+AGG | 0.530628 | 1_4:+22790043 | Msa0156460:CDS |
| TTTGAAGGCGGTGAAGAAGG+AGG | 0.534810 | 1_4:+22788960 | Msa0156460:CDS |
| AGCTGCAGAAGTCTTTGACC+TGG | 0.540849 | 1_4:+22790383 | Msa0156460:CDS |
| TCCGGCGGCGGAGAAGGTGG+CGG | 0.545490 | 1_4:+22788549 | Msa0156460:CDS |
| GTTGGTTCGGGCACGGACGA+CGG | 0.546455 | 1_4:-22788374 | None:intergenic |
| GAGAGGCTGAGCGACGAGAA+CGG | 0.548658 | 1_4:-22788350 | None:intergenic |
| GCCACCTTCTCCGCCGCCGG+AGG | 0.549713 | 1_4:-22788547 | None:intergenic |
| GCGAGAATCGGTGAAATCAA+AGG | 0.549871 | 1_4:+22788741 | Msa0156460:CDS |
| AAAGGTTGGGAGGCTGCCAA+TGG | 0.550167 | 1_4:+22789373 | Msa0156460:intron |
| CGGGCACGGACGACGGTGAG+AGG | 0.550805 | 1_4:-22788367 | None:intergenic |
| GGAAATGAAGGCTCGAAAGC+GGG | 0.551477 | 1_4:+22790055 | Msa0156460:CDS |
| TCCAATACAGAGCTTGACTC+TGG | 0.552781 | 1_4:-22790538 | None:intergenic |
| ACAGATTTAGCCCATTCCAT+TGG | 0.557887 | 1_4:-22789389 | None:intergenic |
| TCAGCCTACAATATATGCAA+TGG | 0.557968 | 1_4:+22790623 | Msa0156460:CDS |
| AGGAAATGAAGGCTCGAAAG+CGG | 0.559282 | 1_4:+22790054 | Msa0156460:CDS |
| GTCCGTGCCCGAACCAACAC+CGG | 0.561375 | 1_4:+22788379 | Msa0156460:CDS |
| TACAGAGCTTGACTCTGGTA+AGG | 0.562707 | 1_4:-22790533 | None:intergenic |
| CAGATTCCGAATCTTGAGGA+TGG | 0.573996 | 1_4:+22789003 | Msa0156460:CDS |
| ACTACACATCAGTGTCTTTG+GGG | 0.576822 | 1_4:-22790504 | None:intergenic |
| GATTCAGATTCCGAATCTTG+AGG | 0.577226 | 1_4:+22788999 | Msa0156460:CDS |
| AGGTGTTGAAGGTGGTGAAG+GGG | 0.577337 | 1_4:+22788908 | Msa0156460:CDS |
| AACCGTTTGCGATGATGAGG+TGG | 0.583375 | 1_4:+22788885 | Msa0156460:CDS |
| GTATAAGCTTGAAATGATGC+AGG | 0.584041 | 1_4:+22789469 | Msa0156460:CDS |
| CGCCGGAGGTTGAAAAGCGA+CGG | 0.587591 | 1_4:-22788533 | None:intergenic |
| CCAAGAGGTATCAACAGACT+CGG | 0.588986 | 1_4:-22789843 | None:intergenic |
| TGATACCTCTTGGAGACTAG+AGG | 0.594585 | 1_4:+22789853 | Msa0156460:CDS |
| CTGGGTGGTCATTATTGGGA+AGG | 0.595959 | 1_4:+22789043 | Msa0156460:CDS |
| GCGAACGCCGACACCGGTGT+TGG | 0.601442 | 1_4:-22788392 | None:intergenic |
| GAAAACCGTTTGCGATGATG+AGG | 0.603670 | 1_4:+22788882 | Msa0156460:CDS |
| CGTCAACATATTTACTGGAG+AGG | 0.615150 | 1_4:+22790748 | Msa0156460:CDS |
| TGCAGAAGTCTTTGACCTGG+AGG | 0.615592 | 1_4:+22790386 | Msa0156460:CDS |
| ATTTCCACAAGCAACACAGA+TGG | 0.621081 | 1_4:+22790781 | Msa0156460:CDS |
| AGAGATTGAGCCATATAGGA+AGG | 0.621596 | 1_4:+22789931 | Msa0156460:CDS |
| TGAATCAACGATTCAAACGA+AGG | 0.623902 | 1_4:+22788684 | Msa0156460:CDS |
| AGTTTCCTGTTGAGCCTGGG+TGG | 0.623936 | 1_4:+22789028 | Msa0156460:CDS |
| TTTGCATGCATCAGACTCGT+CGG | 0.625329 | 1_4:-22788449 | None:intergenic |
| GAAGGTGGCGGAGTGTAAGA+CGG | 0.627090 | 1_4:+22788561 | Msa0156460:CDS |
| TCGAGCCTTCATTTCCTCAG+GGG | 0.629672 | 1_4:-22790048 | None:intergenic |
| CAAGCAACACAGATGGCAAG+AGG | 0.631120 | 1_4:+22790788 | Msa0156460:CDS |
| CGTTTGCGATGATGAGGTGG+AGG | 0.632948 | 1_4:+22788888 | Msa0156460:CDS |
| GAGGCTGAGCGACGAGAACG+GGG | 0.635360 | 1_4:-22788348 | None:intergenic |
| CTCGACCAAACGTTCTGGAG+TGG | 0.641808 | 1_4:+22789185 | Msa0156460:CDS |
| GAGAACGCGAACGCCGACAC+CGG | 0.646491 | 1_4:-22788398 | None:intergenic |
| GCAACACAGATGGCAAGAGG+AGG | 0.648362 | 1_4:+22790791 | Msa0156460:CDS |
| TATACGGCGTAGCAATGCAT+CGG | 0.649387 | 1_4:-22789451 | None:intergenic |
| TGAGGTGGAGGTGTTGAAGG+TGG | 0.649806 | 1_4:+22788900 | Msa0156460:CDS |
| GTTGAACTCTAAAGGTTGGG+AGG | 0.654181 | 1_4:+22789363 | Msa0156460:intron |
| GAACGTGGTTTGTGATACAC+AGG | 0.657147 | 1_4:+22788780 | Msa0156460:CDS |
| TCTTGGAGACTAGAGGCTTG+TGG | 0.657160 | 1_4:+22789860 | Msa0156460:CDS |
| CTTCTACTGCTAAAGGAGTG+AGG | 0.658816 | 1_4:+22789082 | Msa0156460:CDS |
| TGAAACTTATACGATGTATG+CGG | 0.662039 | 1_4:-22789147 | None:intergenic |
| TCAAACGCAAGCATCGAACG+TGG | 0.667645 | 1_4:-22788595 | None:intergenic |
| CTTCCCAATAATGACCACCC+AGG | 0.682740 | 1_4:-22789042 | None:intergenic |
| ACAAGCCTCTAGTCTCCAAG+AGG | 0.682826 | 1_4:-22789858 | None:intergenic |
| ATATTTAACAGTGTAAGCAG+TGG | 0.685796 | 1_4:-22789905 | None:intergenic |
| GCCACTTCCAGCAACAACTG+AGG | 0.699488 | 1_4:+22790317 | Msa0156460:CDS |
| AGAAGTTGCTAATCTGAACG+TGG | 0.704739 | 1_4:+22788765 | Msa0156460:CDS |
| ATATTGTAGGCTGACCAGCA+AGG | 0.716176 | 1_4:-22790614 | None:intergenic |
| CTAGGCTGATTTCACCCCTG+AGG | 0.737779 | 1_4:+22790034 | Msa0156460:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAGTAGAAAATTTTTT+AGG | - | chr1_4:22788277-22788296 | None:intergenic | 10.0% |
| !!! | ACAAAAATGTAAACTTTTTA+AGG | - | chr1_4:22789223-22789242 | None:intergenic | 15.0% |
| !!! | ATATTTTTTGTTGAGTTTAT+TGG | + | chr1_4:22789762-22789781 | Msa0156460:intron | 15.0% |
| !!! | TTATTTCTATAATGATATCA+AGG | - | chr1_4:22790695-22790714 | None:intergenic | 15.0% |
| !!! | GTGATATATTTTTGTTATGT+TGG | + | chr1_4:22789337-22789356 | Msa0156460:intron | 20.0% |
| !!! | TAAGTAATTTCTGGTTTATT+TGG | + | chr1_4:22789514-22789533 | Msa0156460:intron | 20.0% |
| !!! | AACAAACTTTGAGAAAATTA+AGG | + | chr1_4:22789692-22789711 | Msa0156460:intron | 20.0% |
| !! | AACTCAACAAAAAATATCTT+TGG | - | chr1_4:22789759-22789778 | None:intergenic | 20.0% |
| !!! | AACCTAATTGATACATTTTT+GGG | + | chr1_4:22789791-22789810 | Msa0156460:intron | 20.0% |
| !!! | TAAGTTTGTTATTTCTAACT+AGG | + | chr1_4:22790016-22790035 | Msa0156460:intron | 20.0% |
| !! | AAGCTACAAACTATTAAAAA+GGG | - | chr1_4:22790117-22790136 | None:intergenic | 20.0% |
| !! | AAAGCTACAAACTATTAAAA+AGG | - | chr1_4:22790118-22790137 | None:intergenic | 20.0% |
| !! | GTAATATGAACAGAAAAATT+AGG | - | chr1_4:22790235-22790254 | None:intergenic | 20.0% |
| !! | AAGATATGAAAGACATAAAA+AGG | - | chr1_4:22790471-22790490 | None:intergenic | 20.0% |
| !! | TTTATGTCTTTCATATCTTT+AGG | + | chr1_4:22790472-22790491 | Msa0156460:intron | 20.0% |
| !!! | TTTTTTCTTCTTCAGCAAAA+TGG | + | chr1_4:22788294-22788313 | Msa0156460:exon | 25.0% |
| ! | ATACATCGTATAAGTTTCAA+TGG | + | chr1_4:22789151-22789170 | Msa0156460:CDS | 25.0% |
| !!! | GATTGTTTTGATGTTTTTGT+TGG | + | chr1_4:22789302-22789321 | Msa0156460:intron | 25.0% |
| ! | AGGAAATAATGTTGTTAGTA+AGG | + | chr1_4:22789489-22789508 | Msa0156460:CDS | 25.0% |
| ! | AGTAAGGTATAAGTAATTTC+TGG | + | chr1_4:22789505-22789524 | Msa0156460:intron | 25.0% |
| !!! | GTTTATTTGGTTAGTTTAGT+TGG | + | chr1_4:22789527-22789546 | Msa0156460:intron | 25.0% |
| !!! | TGAAAGCTTTCACTTTTATT+TGG | + | chr1_4:22789561-22789580 | Msa0156460:intron | 25.0% |
| !!! | TTTGGTTTTTTGTGTTCTAT+TGG | + | chr1_4:22789579-22789598 | Msa0156460:intron | 25.0% |
| !!! | AAACATACAAAAAGCACTTA+AGG | - | chr1_4:22789640-22789659 | None:intergenic | 25.0% |
| !!! | ACTTAAAAGTACACTTTTTG+AGG | + | chr1_4:22789661-22789680 | Msa0156460:intron | 25.0% |
| !! | GAACCTAATTGATACATTTT+TGG | + | chr1_4:22789790-22789809 | Msa0156460:intron | 25.0% |
| ! | ATATACGTCAACATATTTAC+TGG | + | chr1_4:22790743-22790762 | Msa0156460:CDS | 25.0% |
| ! | GCTTCATTTTCAAATTCTTG+AGG | - | chr1_4:22788502-22788521 | None:intergenic | 30.0% |
| TGATGAATCGTTGAAATCAA+TGG | + | chr1_4:22788657-22788676 | Msa0156460:CDS | 30.0% | |
| TGAAACTTATACGATGTATG+CGG | - | chr1_4:22789150-22789169 | None:intergenic | 30.0% | |
| !! | GTTTTGATGTTTTTGTTGGA+AGG | + | chr1_4:22789306-22789325 | Msa0156460:intron | 30.0% |
| TGCATCATTTCAAGCTTATA+CGG | - | chr1_4:22789470-22789489 | None:intergenic | 30.0% | |
| TGCCCAAAAATGTATCAATT+AGG | - | chr1_4:22789796-22789815 | None:intergenic | 30.0% | |
| ATATTTAACAGTGTAAGCAG+TGG | - | chr1_4:22789908-22789927 | None:intergenic | 30.0% | |
| AGATTCATTACCTTCCTATA+TGG | - | chr1_4:22789944-22789963 | None:intergenic | 30.0% | |
| AAGCAATATGTGCATATTAG+AGG | + | chr1_4:22790209-22790228 | Msa0156460:intron | 30.0% | |
| ! | AACACATTTTATATACCTCC+AGG | - | chr1_4:22790404-22790423 | None:intergenic | 30.0% |
| GTGTTCCAATTTCAATTGTT+TGG | + | chr1_4:22790419-22790438 | Msa0156460:intron | 30.0% | |
| ! | TCTTTCATATCTTTAGGAGA+AGG | + | chr1_4:22790478-22790497 | Msa0156460:intron | 30.0% |
| TAACCCATTGCATATATTGT+AGG | - | chr1_4:22790630-22790649 | None:intergenic | 30.0% | |
| ! | TAGAAGCTTAAATTTGCTTG+AGG | - | chr1_4:22790672-22790691 | None:intergenic | 30.0% |
| !! | AACTTGCCATACTTTTTAAC+AGG | + | chr1_4:22790714-22790733 | Msa0156460:intron | 30.0% |
| !!! | GACGATGTCGTTTTTAGAAA+CGG | + | chr1_4:22788322-22788341 | Msa0156460:CDS | 35.0% |
| TGAATCAACGATTCAAACGA+AGG | + | chr1_4:22788684-22788703 | Msa0156460:CDS | 35.0% | |
| !! | TGATGAAGTTAGGGTTTTGA+AGG | + | chr1_4:22788945-22788964 | Msa0156460:CDS | 35.0% |
| ! | ATTGCTACTTCTACTGCTAA+AGG | + | chr1_4:22789075-22789094 | Msa0156460:CDS | 35.0% |
| TTATACGATGTATGCGGATT+CGG | - | chr1_4:22789144-22789163 | None:intergenic | 35.0% | |
| ! | TGTGTTGAACTCTAAAGGTT+GGG | + | chr1_4:22789360-22789379 | Msa0156460:intron | 35.0% |
| TGTGCAATCTGGAAATGTTA+AGG | + | chr1_4:22789421-22789440 | Msa0156460:CDS | 35.0% | |
| GTATAAGCTTGAAATGATGC+AGG | + | chr1_4:22789469-22789488 | Msa0156460:CDS | 35.0% | |
| CATAGCTAGTTAAGAACCAT+AGG | + | chr1_4:22789726-22789745 | Msa0156460:intron | 35.0% | |
| ! | TATCTTTGGTGCATTTCCTA+TGG | - | chr1_4:22789745-22789764 | None:intergenic | 35.0% |
| !! | TCAGCTTTGAACAAACTTGT+TGG | + | chr1_4:22790360-22790379 | Msa0156460:CDS | 35.0% |
| TGCAGCCAAACAATTGAAAT+TGG | - | chr1_4:22790427-22790446 | None:intergenic | 35.0% | |
| TTGGATGACAAAAATCGAGA+AGG | + | chr1_4:22790556-22790575 | Msa0156460:CDS | 35.0% | |
| TGGATGACAAAAATCGAGAA+GGG | + | chr1_4:22790557-22790576 | Msa0156460:CDS | 35.0% | |
| TCAGCCTACAATATATGCAA+TGG | + | chr1_4:22790623-22790642 | Msa0156460:CDS | 35.0% | |
| CAGCCTACAATATATGCAAT+GGG | + | chr1_4:22790624-22790643 | Msa0156460:CDS | 35.0% | |
| !! | TTGCCATACTTTTTAACAGG+AGG | + | chr1_4:22790717-22790736 | Msa0156460:intron | 35.0% |
| TGACCTCCTGTTAAAAAGTA+TGG | - | chr1_4:22790723-22790742 | None:intergenic | 35.0% | |
| !!! | TCGGAGTTAGGGTTTTGATT+CGG | - | chr1_4:22788433-22788452 | None:intergenic | 40.0% |
| ! | AGTTTTCGAAACGCGAGAAT+CGG | + | chr1_4:22788729-22788748 | Msa0156460:CDS | 40.0% |
| AGAAGTTGCTAATCTGAACG+TGG | + | chr1_4:22788765-22788784 | Msa0156460:CDS | 40.0% | |
| ! | TTAACCGGTTCAACCTTAAC+CGG | - | chr1_4:22788808-22788827 | None:intergenic | 40.0% |
| ! | TTAACCGGTTCAACCTTAAC+CGG | - | chr1_4:22788808-22788827 | None:intergenic | 40.0% |
| ! | GTTTTCTTCTCTGCACAAAC+CGG | - | chr1_4:22788868-22788887 | None:intergenic | 40.0% |
| AAGCTGTGAGTGATGAAGTT+AGG | + | chr1_4:22788935-22788954 | Msa0156460:CDS | 40.0% | |
| AGCTGTGAGTGATGAAGTTA+GGG | + | chr1_4:22788936-22788955 | Msa0156460:CDS | 40.0% | |
| !!! | TGAAGTTAGGGTTTTGAAGG+CGG | + | chr1_4:22788948-22788967 | Msa0156460:CDS | 40.0% |
| GATTCAGATTCCGAATCTTG+AGG | + | chr1_4:22788999-22789018 | Msa0156460:CDS | 40.0% | |
| AACTCACCATCCTCAAGATT+CGG | - | chr1_4:22789012-22789031 | None:intergenic | 40.0% | |
| TATACGATGTATGCGGATTC+GGG | - | chr1_4:22789143-22789162 | None:intergenic | 40.0% | |
| GTTGGTGTGTTGAACTCTAA+AGG | + | chr1_4:22789355-22789374 | Msa0156460:intron | 40.0% | |
| ! | GTGTGTTGAACTCTAAAGGT+TGG | + | chr1_4:22789359-22789378 | Msa0156460:intron | 40.0% |
| ACAGATTTAGCCCATTCCAT+TGG | - | chr1_4:22789392-22789411 | None:intergenic | 40.0% | |
| ACATTTCCAGATTGCACAAG+AGG | - | chr1_4:22789419-22789438 | None:intergenic | 40.0% | |
| TCTGGAAATGTTAAGGTTCG+AGG | + | chr1_4:22789428-22789447 | Msa0156460:CDS | 40.0% | |
| TGCTAGAGATTGAGCCATAT+AGG | + | chr1_4:22789927-22789946 | Msa0156460:CDS | 40.0% | |
| AGAGATTGAGCCATATAGGA+AGG | + | chr1_4:22789931-22789950 | Msa0156460:CDS | 40.0% | |
| AAACTTCATCTGAGTCAAGC+TGG | - | chr1_4:22790257-22790276 | None:intergenic | 40.0% | |
| ! | CCTTTTCTTCGCTTATTGAC+AGG | - | chr1_4:22790288-22790307 | None:intergenic | 40.0% |
| CCTGTCAATAAGCGAAGAAA+AGG | + | chr1_4:22790285-22790304 | Msa0156460:CDS | 40.0% | |
| TGAGGATGAACAAGCACTTT+CGG | + | chr1_4:22790335-22790354 | Msa0156460:CDS | 40.0% | |
| ACTACACATCAGTGTCTTTG+GGG | - | chr1_4:22790507-22790526 | None:intergenic | 40.0% | |
| GACTACACATCAGTGTCTTT+GGG | - | chr1_4:22790508-22790527 | None:intergenic | 40.0% | |
| AGACTACACATCAGTGTCTT+TGG | - | chr1_4:22790509-22790528 | None:intergenic | 40.0% | |
| ATGACAAAAATCGAGAAGGG+AGG | + | chr1_4:22790560-22790579 | Msa0156460:CDS | 40.0% | |
| AGAGAAATCTACATCCTTGC+TGG | + | chr1_4:22790600-22790619 | Msa0156460:CDS | 40.0% | |
| ! | GGGTTAGTACAAATAGTACG+TGG | + | chr1_4:22790644-22790663 | Msa0156460:intron | 40.0% |
| CGTCAACATATTTACTGGAG+AGG | + | chr1_4:22790748-22790767 | Msa0156460:CDS | 40.0% | |
| ATTTCCACAAGCAACACAGA+TGG | + | chr1_4:22790781-22790800 | Msa0156460:CDS | 40.0% | |
| !!! | GAGTTAGGGTTTTGATTCGG+TGG | - | chr1_4:22788430-22788449 | None:intergenic | 45.0% |
| TTTGCATGCATCAGACTCGT+CGG | - | chr1_4:22788452-22788471 | None:intergenic | 45.0% | |
| GCGAGAATCGGTGAAATCAA+AGG | + | chr1_4:22788741-22788760 | Msa0156460:CDS | 45.0% | |
| ! | GAACGTGGTTTGTGATACAC+AGG | + | chr1_4:22788780-22788799 | Msa0156460:CDS | 45.0% |
| GGTTTGTGATACACAGGAAC+CGG | + | chr1_4:22788786-22788805 | Msa0156460:CDS | 45.0% | |
| TGATACACAGGAACCGGTTA+AGG | + | chr1_4:22788792-22788811 | Msa0156460:CDS | 45.0% | |
| GGTTAAGGTTGAACCGGTTA+AGG | + | chr1_4:22788807-22788826 | Msa0156460:CDS | 45.0% | |
| TGAACCGGTTAAGGTTGAAC+CGG | + | chr1_4:22788816-22788835 | Msa0156460:CDS | 45.0% | |
| GGTTAAGGTTGAACCGGTTA+AGG | + | chr1_4:22788807-22788826 | Msa0156460:CDS | 45.0% | |
| ! | TTAACCGGTTCAGCCTTAAC+CGG | - | chr1_4:22788838-22788857 | None:intergenic | 45.0% |
| TGAACCGGTTAAGGTTGAAC+CGG | + | chr1_4:22788816-22788835 | Msa0156460:CDS | 45.0% | |
| ! | CAAACCGGTTCAACCTTAAC+CGG | - | chr1_4:22788853-22788872 | None:intergenic | 45.0% |
| GAAAACCGTTTGCGATGATG+AGG | + | chr1_4:22788882-22788901 | Msa0156460:CDS | 45.0% | |
| CAGATTCCGAATCTTGAGGA+TGG | + | chr1_4:22789003-22789022 | Msa0156460:CDS | 45.0% | |
| CTTCTACTGCTAAAGGAGTG+AGG | + | chr1_4:22789082-22789101 | Msa0156460:CDS | 45.0% | |
| TGCTAAAGGAGTGAGGAGAT+TGG | + | chr1_4:22789089-22789108 | Msa0156460:CDS | 45.0% | |
| TAGTACCACTCCAGAACGTT+TGG | - | chr1_4:22789193-22789212 | None:intergenic | 45.0% | |
| ! | GTTGAACTCTAAAGGTTGGG+AGG | + | chr1_4:22789363-22789382 | Msa0156460:intron | 45.0% |
| GTGATTCCTCTTGTGCAATC+TGG | + | chr1_4:22789410-22789429 | Msa0156460:CDS | 45.0% | |
| TATACGGCGTAGCAATGCAT+CGG | - | chr1_4:22789454-22789473 | None:intergenic | 45.0% | |
| !! | CCAAGAGGTATCAACAGACT+CGG | - | chr1_4:22789846-22789865 | None:intergenic | 45.0% |
| TGATACCTCTTGGAGACTAG+AGG | + | chr1_4:22789853-22789872 | Msa0156460:CDS | 45.0% | |
| TTTCACCCCTGAGGAAATGA+AGG | + | chr1_4:22790043-22790062 | Msa0156460:CDS | 45.0% | |
| TTCGAGCCTTCATTTCCTCA+GGG | - | chr1_4:22790052-22790071 | None:intergenic | 45.0% | |
| TTTCGAGCCTTCATTTCCTC+AGG | - | chr1_4:22790053-22790072 | None:intergenic | 45.0% | |
| AGGAAATGAAGGCTCGAAAG+CGG | + | chr1_4:22790054-22790073 | Msa0156460:CDS | 45.0% | |
| TGTTCATCCTCAGTTGTTGC+TGG | - | chr1_4:22790327-22790346 | None:intergenic | 45.0% | |
| TACAGAGCTTGACTCTGGTA+AGG | - | chr1_4:22790536-22790555 | None:intergenic | 45.0% | |
| ACCAGAGTCAAGCTCTGTAT+TGG | + | chr1_4:22790537-22790556 | Msa0156460:CDS | 45.0% | |
| TCCAATACAGAGCTTGACTC+TGG | - | chr1_4:22790541-22790560 | None:intergenic | 45.0% | |
| ATATTGTAGGCTGACCAGCA+AGG | - | chr1_4:22790617-22790636 | None:intergenic | 45.0% | |
| CATCAGACTCGTCGGAGTTA+GGG | - | chr1_4:22788444-22788463 | None:intergenic | 50.0% | |
| !! | TCAAACGCAAGCATCGAACG+TGG | - | chr1_4:22788598-22788617 | None:intergenic | 50.0% |
| GGAACCGGTTAAGGTTGAAC+CGG | + | chr1_4:22788801-22788820 | Msa0156460:CDS | 50.0% | |
| TGAACCGGTTAAGGCTGAAC+CGG | + | chr1_4:22788831-22788850 | Msa0156460:CDS | 50.0% | |
| GGTTAAGGCTGAACCGGTTA+AGG | + | chr1_4:22788837-22788856 | Msa0156460:CDS | 50.0% | |
| AACCGTTTGCGATGATGAGG+TGG | + | chr1_4:22788885-22788904 | Msa0156460:CDS | 50.0% | |
| CTCCACCTCATCATCGCAAA+CGG | - | chr1_4:22788890-22788909 | None:intergenic | 50.0% | |
| !! | TGATGAGGTGGAGGTGTTGA+AGG | + | chr1_4:22788897-22788916 | Msa0156460:CDS | 50.0% |
| !! | GAGGTGTTGAAGGTGGTGAA+GGG | + | chr1_4:22788907-22788926 | Msa0156460:CDS | 50.0% |
| !! | AGGTGTTGAAGGTGGTGAAG+GGG | + | chr1_4:22788908-22788927 | Msa0156460:CDS | 50.0% |
| !!! | GGTTTTGAAGGCGGTGAAGA+AGG | + | chr1_4:22788957-22788976 | Msa0156460:CDS | 50.0% |
| TTTGAAGGCGGTGAAGAAGG+AGG | + | chr1_4:22788960-22788979 | Msa0156460:CDS | 50.0% | |
| GTGAGTTTCCTGTTGAGCCT+GGG | + | chr1_4:22789025-22789044 | Msa0156460:CDS | 50.0% | |
| TGAGCCTGGGTGGTCATTAT+TGG | + | chr1_4:22789038-22789057 | Msa0156460:CDS | 50.0% | |
| GAGCCTGGGTGGTCATTATT+GGG | + | chr1_4:22789039-22789058 | Msa0156460:CDS | 50.0% | |
| CTTCCCAATAATGACCACCC+AGG | - | chr1_4:22789045-22789064 | None:intergenic | 50.0% | |
| CTGGGTGGTCATTATTGGGA+AGG | + | chr1_4:22789043-22789062 | Msa0156460:CDS | 50.0% | |
| CCGAGTCTGTTGATACCTCT+TGG | + | chr1_4:22789843-22789862 | Msa0156460:CDS | 50.0% | |
| ACAAGCCTCTAGTCTCCAAG+AGG | - | chr1_4:22789861-22789880 | None:intergenic | 50.0% | |
| TCTTGGAGACTAGAGGCTTG+TGG | + | chr1_4:22789860-22789879 | Msa0156460:CDS | 50.0% | |
| TCGAGCCTTCATTTCCTCAG+GGG | - | chr1_4:22790051-22790070 | None:intergenic | 50.0% | |
| GGAAATGAAGGCTCGAAAGC+GGG | + | chr1_4:22790055-22790074 | Msa0156460:CDS | 50.0% | |
| TCCTCAGTTGTTGCTGGAAG+TGG | - | chr1_4:22790321-22790340 | None:intergenic | 50.0% | |
| AGCTGCAGAAGTCTTTGACC+TGG | + | chr1_4:22790383-22790402 | Msa0156460:CDS | 50.0% | |
| TGCAGAAGTCTTTGACCTGG+AGG | + | chr1_4:22790386-22790405 | Msa0156460:CDS | 50.0% | |
| !! | CTTGCCATCTGTGTTGCTTG+TGG | - | chr1_4:22790788-22790807 | None:intergenic | 50.0% |
| CAAGCAACACAGATGGCAAG+AGG | + | chr1_4:22790788-22790807 | Msa0156460:CDS | 50.0% | |
| GCATCAGACTCGTCGGAGTT+AGG | - | chr1_4:22788445-22788464 | None:intergenic | 55.0% | |
| !!! | CACCGTCGCTTTTCAACCTC+CGG | + | chr1_4:22788531-22788550 | Msa0156460:CDS | 55.0% |
| !! | GAAGGTGGCGGAGTGTAAGA+CGG | + | chr1_4:22788561-22788580 | Msa0156460:CDS | 55.0% |
| CGTTTGCGATGATGAGGTGG+AGG | + | chr1_4:22788888-22788907 | Msa0156460:CDS | 55.0% | |
| !! | TGAGGTGGAGGTGTTGAAGG+TGG | + | chr1_4:22788900-22788919 | Msa0156460:CDS | 55.0% |
| !! | GGAGGTGTTGAAGGTGGTGA+AGG | + | chr1_4:22788906-22788925 | Msa0156460:CDS | 55.0% |
| GGTGAGTTTCCTGTTGAGCC+TGG | + | chr1_4:22789024-22789043 | Msa0156460:CDS | 55.0% | |
| AGTTTCCTGTTGAGCCTGGG+TGG | + | chr1_4:22789028-22789047 | Msa0156460:CDS | 55.0% | |
| AATGACCACCCAGGCTCAAC+AGG | - | chr1_4:22789036-22789055 | None:intergenic | 55.0% | |
| CGTGTCTCGACCAAACGTTC+TGG | + | chr1_4:22789180-22789199 | Msa0156460:CDS | 55.0% | |
| !! | CTCGACCAAACGTTCTGGAG+TGG | + | chr1_4:22789185-22789204 | Msa0156460:CDS | 55.0% |
| AAAGGTTGGGAGGCTGCCAA+TGG | + | chr1_4:22789373-22789392 | Msa0156460:intron | 55.0% | |
| TTGGGAGGCTGCCAATGGAA+TGG | + | chr1_4:22789378-22789397 | Msa0156460:CDS | 55.0% | |
| TGGGAGGCTGCCAATGGAAT+GGG | + | chr1_4:22789379-22789398 | Msa0156460:CDS | 55.0% | |
| ! | CTAGGCTGATTTCACCCCTG+AGG | + | chr1_4:22790034-22790053 | Msa0156460:intron | 55.0% |
| GCCACTTCCAGCAACAACTG+AGG | + | chr1_4:22790317-22790336 | Msa0156460:CDS | 55.0% | |
| GCAACACAGATGGCAAGAGG+AGG | + | chr1_4:22790791-22790810 | Msa0156460:CDS | 55.0% | |
| AGAGGCTGAGCGACGAGAAC+GGG | - | chr1_4:22788352-22788371 | None:intergenic | 60.0% | |
| GAGAGGCTGAGCGACGAGAA+CGG | - | chr1_4:22788353-22788372 | None:intergenic | 60.0% | |
| CGCCGGAGGTTGAAAAGCGA+CGG | - | chr1_4:22788536-22788555 | None:intergenic | 60.0% | |
| !!! | CGTCGCTTTTCAACCTCCGG+CGG | + | chr1_4:22788534-22788553 | Msa0156460:CDS | 60.0% |
| GAGGCTGAGCGACGAGAACG+GGG | - | chr1_4:22788351-22788370 | None:intergenic | 65.0% | |
| !! | GTTGGTTCGGGCACGGACGA+CGG | - | chr1_4:22788377-22788396 | None:intergenic | 65.0% |
| GTCCGTGCCCGAACCAACAC+CGG | + | chr1_4:22788379-22788398 | Msa0156460:CDS | 65.0% | |
| !! | CACCGGTGTTGGTTCGGGCA+CGG | - | chr1_4:22788384-22788403 | None:intergenic | 65.0% |
| GCCCGAACCAACACCGGTGT+CGG | + | chr1_4:22788385-22788404 | Msa0156460:CDS | 65.0% | |
| !! | GCCGACACCGGTGTTGGTTC+GGG | - | chr1_4:22788389-22788408 | None:intergenic | 65.0% |
| !! | CGCCGACACCGGTGTTGGTT+CGG | - | chr1_4:22788390-22788409 | None:intergenic | 65.0% |
| GAGAACGCGAACGCCGACAC+CGG | - | chr1_4:22788401-22788420 | None:intergenic | 65.0% | |
| ! | CGCTTTTCAACCTCCGGCGG+CGG | + | chr1_4:22788537-22788556 | Msa0156460:CDS | 65.0% |
| GCGAACGCCGACACCGGTGT+TGG | - | chr1_4:22788395-22788414 | None:intergenic | 70.0% | |
| TCAACCTCCGGCGGCGGAGA+AGG | + | chr1_4:22788543-22788562 | Msa0156460:CDS | 70.0% | |
| CGGGCACGGACGACGGTGAG+AGG | - | chr1_4:22788370-22788389 | None:intergenic | 75.0% | |
| ACCTCCGGCGGCGGAGAAGG+TGG | + | chr1_4:22788546-22788565 | Msa0156460:CDS | 75.0% | |
| TCCGGCGGCGGAGAAGGTGG+CGG | + | chr1_4:22788549-22788568 | Msa0156460:CDS | 75.0% | |
| TCCGCCACCTTCTCCGCCGC+CGG | - | chr1_4:22788553-22788572 | None:intergenic | 75.0% | |
| ! | GCCACCTTCTCCGCCGCCGG+AGG | - | chr1_4:22788550-22788569 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 22788245 | 22790844 | 22788245 | ID=Msa0156460;Name=Msa0156460 |
| chr1_4 | mRNA | 22788245 | 22790844 | 22788245 | ID=Msa0156460-mRNA-1;Parent=Msa0156460;Name=Msa0156460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=68|1|0.85|1|1|1|7|0|540 |
| chr1_4 | exon | 22788245 | 22789206 | 22788245 | ID=Msa0156460-mRNA-1:exon:8062;Parent=Msa0156460-mRNA-1 |
| chr1_4 | exon | 22789377 | 22789510 | 22789377 | ID=Msa0156460-mRNA-1:exon:8063;Parent=Msa0156460-mRNA-1 |
| chr1_4 | exon | 22789817 | 22789952 | 22789817 | ID=Msa0156460-mRNA-1:exon:8064;Parent=Msa0156460-mRNA-1 |
| chr1_4 | exon | 22790038 | 22790085 | 22790038 | ID=Msa0156460-mRNA-1:exon:8065;Parent=Msa0156460-mRNA-1 |
| chr1_4 | exon | 22790258 | 22790407 | 22790258 | ID=Msa0156460-mRNA-1:exon:8066;Parent=Msa0156460-mRNA-1 |
| chr1_4 | exon | 22790494 | 22790645 | 22790494 | ID=Msa0156460-mRNA-1:exon:8067;Parent=Msa0156460-mRNA-1 |
| chr1_4 | exon | 22790736 | 22790844 | 22790736 | ID=Msa0156460-mRNA-1:exon:8068;Parent=Msa0156460-mRNA-1 |
| chr1_4 | five_prime_UTR | 22788245 | 22788312 | 22788245 | ID=Msa0156460-mRNA-1:five_prime_utr;Parent=Msa0156460-mRNA-1 |
| chr1_4 | CDS | 22788313 | 22789206 | 22788313 | ID=Msa0156460-mRNA-1:cds;Parent=Msa0156460-mRNA-1 |
| chr1_4 | CDS | 22789377 | 22789510 | 22789377 | ID=Msa0156460-mRNA-1:cds;Parent=Msa0156460-mRNA-1 |
| chr1_4 | CDS | 22789817 | 22789952 | 22789817 | ID=Msa0156460-mRNA-1:cds;Parent=Msa0156460-mRNA-1 |
| chr1_4 | CDS | 22790038 | 22790085 | 22790038 | ID=Msa0156460-mRNA-1:cds;Parent=Msa0156460-mRNA-1 |
| chr1_4 | CDS | 22790258 | 22790407 | 22790258 | ID=Msa0156460-mRNA-1:cds;Parent=Msa0156460-mRNA-1 |
| chr1_4 | CDS | 22790494 | 22790645 | 22790494 | ID=Msa0156460-mRNA-1:cds;Parent=Msa0156460-mRNA-1 |
| chr1_4 | CDS | 22790736 | 22790844 | 22790736 | ID=Msa0156460-mRNA-1:cds;Parent=Msa0156460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
