AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0156510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156510 MtrunA17_Chr1g0168031 95.597 704 27 1 1 700 1 704 0.0 1345
Msa0156510 MtrunA17_Chr2g0320751 38.200 500 262 10 246 705 106 598 4.91e-105 344
Msa0156510 MtrunA17_Chr7g0255821 34.468 235 126 6 466 700 201 407 6.90e-32 132
Msa0156510 MtrunA17_Chr2g0281601 35.081 248 82 8 530 700 577 822 7.20e-28 120
Msa0156510 MtrunA17_Chr1g0212331 31.496 254 91 7 530 700 313 566 2.33e-25 112
Msa0156510 MtrunA17_Chr3g0083491 38.462 117 69 2 584 698 728 843 6.10e-17 85.9
Msa0156510 MtrunA17_Chr5g0428401 37.162 148 63 7 586 705 488 633 1.98e-16 84.3
Msa0156510 MtrunA17_Chr4g0024921 34.586 133 66 3 523 648 253 371 4.46e-14 76.3
Msa0156510 MtrunA17_Chr4g0017211 25.962 208 126 4 500 705 1440 1621 2.64e-12 70.9
Msa0156510 MtrunA17_Chr4g0040301 32.335 167 83 8 538 700 18 158 7.87e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156510 AT5G43530.1 52.302 543 224 10 166 700 340 855 0.0 555
Msa0156510 AT5G22750.1 40.551 508 248 12 246 705 110 611 5.74e-113 365
Msa0156510 AT3G16600.1 37.561 205 88 5 519 700 65 252 2.46e-29 124
Msa0156510 AT5G05130.1 30.337 267 146 9 457 700 221 470 4.45e-29 124
Msa0156510 AT1G11100.5 41.799 189 92 6 530 700 422 610 1.22e-28 123
Msa0156510 AT1G11100.1 41.799 189 92 6 530 700 565 753 1.85e-28 123
Msa0156510 AT1G02670.6 35.450 189 93 3 523 705 110 275 2.01e-27 118
Msa0156510 AT1G02670.4 35.450 189 93 3 523 705 137 302 2.48e-27 117
Msa0156510 AT1G02670.5 35.450 189 93 3 523 705 110 275 2.67e-27 118
Msa0156510 AT1G02670.7 35.450 189 93 3 523 705 137 302 3.57e-27 117
Msa0156510 AT1G02670.1 35.450 189 93 3 523 705 148 313 3.71e-27 117
Msa0156510 AT1G02670.3 35.450 189 93 3 523 705 137 302 3.73e-27 117
Msa0156510 AT1G02670.2 35.450 189 93 3 523 705 137 302 5.34e-27 117
Msa0156510 AT1G50410.2 30.916 262 90 5 530 700 249 510 1.54e-25 113
Msa0156510 AT1G50410.1 30.916 262 90 5 530 700 249 510 1.54e-25 113
Msa0156510 AT1G50410.3 30.916 262 90 5 530 700 249 510 1.54e-25 113
Msa0156510 AT1G50410.4 30.916 262 90 5 530 700 249 510 1.69e-25 113
Msa0156510 AT1G11100.3 34.764 233 90 7 530 700 422 654 4.06e-24 108
Msa0156510 AT1G11100.4 34.764 233 90 7 530 700 565 797 4.84e-24 108
Msa0156510 AT1G11100.2 34.764 233 90 7 530 700 564 796 4.96e-24 108
Msa0156510 AT3G20010.2 30.576 278 86 7 530 700 13 290 1.25e-23 107
Msa0156510 AT3G20010.3 30.576 278 86 7 530 700 38 315 1.54e-23 106
Msa0156510 AT3G20010.4 30.576 278 86 7 530 700 304 581 6.02e-23 105
Msa0156510 AT3G20010.6 30.576 278 86 7 530 700 304 581 6.02e-23 105
Msa0156510 AT3G20010.8 30.576 278 86 7 530 700 304 581 6.02e-23 105
Msa0156510 AT3G20010.1 30.576 278 86 7 530 700 304 581 6.96e-23 105
Msa0156510 AT3G20010.5 30.576 278 86 7 530 700 304 581 6.96e-23 105
Msa0156510 AT3G20010.7 30.576 278 86 7 530 700 304 581 6.96e-23 105
Msa0156510 AT2G40770.2 32.857 140 69 4 586 700 500 639 1.35e-15 82.0
Msa0156510 AT2G40770.1 32.857 140 69 4 586 700 500 639 1.35e-15 82.0
Msa0156510 AT2G40770.3 32.857 140 69 4 586 700 500 639 1.35e-15 82.0
Msa0156510 AT1G05120.1 33.577 137 63 3 526 660 155 265 2.01e-15 80.9
Msa0156510 AT1G05120.2 33.577 137 63 3 526 660 198 308 2.02e-15 80.9
Msa0156510 AT3G54280.2 26.442 208 125 4 500 705 1472 1653 1.86e-14 78.2
Msa0156510 AT3G54280.1 26.442 208 125 4 500 705 1441 1622 1.93e-14 78.2
Msa0156510 AT1G03750.1 30.460 174 93 6 530 700 159 307 1.27e-13 75.1
Msa0156510 AT3G06400.2 27.624 181 90 6 531 705 210 355 1.54e-11 68.6
Msa0156510 AT3G06400.1 27.624 181 90 6 531 705 210 355 1.61e-11 68.6
Msa0156510 AT3G54460.2 37.607 117 70 3 584 698 455 570 1.66e-11 68.6
Msa0156510 AT3G06400.3 27.624 181 90 6 531 705 210 355 1.67e-11 68.6
Msa0156510 AT3G54460.1 37.607 117 70 3 584 698 752 867 1.79e-11 68.6

Find 166 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCCATATTTGTTCATTA+TGG 0.248590 1_4:+22993023 Msa0156510:CDS
AGACTACACATCAGTGTCTT+TGG 0.248953 1_4:-22992206 None:intergenic
CGCCGACACCGGTGTTGGTT+CGG 0.259876 1_4:-22990093 None:intergenic
ACCACTTCAGGTTAATTATC+AGG 0.278620 1_4:+22993363 Msa0156510:CDS
GACTACACATCAGTGTCTTT+GGG 0.280932 1_4:-22992205 None:intergenic
TGCATCATTTCAAGCTTATA+CGG 0.290345 1_4:-22991167 None:intergenic
CACTGCCGCTGGTGTCTAAC+TGG 0.304962 1_4:+22993337 Msa0156510:CDS
GCATCAGACTCGTCGGAGTT+AGG 0.316471 1_4:-22990148 None:intergenic
CCCACCATAATGAACAAATA+TGG 0.317995 1_4:-22993027 None:intergenic
GGTGAGTTTCCTGTTGAGCC+TGG 0.323707 1_4:+22990730 Msa0156510:CDS
AACCCTTCGTCTAATTTAGA+AGG 0.328898 1_4:+22992760 Msa0156510:CDS
TAACAACAAATCAGGATTAC+TGG 0.336562 1_4:-22993057 None:intergenic
CACTTTAATTGTTTGTCCTA+TGG 0.343073 1_4:+22992786 Msa0156510:CDS
TTATACGATGTATGCGGATT+CGG 0.347936 1_4:-22990847 None:intergenic
AAGCTGTGAGTGATGAAGTT+AGG 0.351208 1_4:+22990641 Msa0156510:CDS
TCCTCAGTTGTTGCTGGAAG+TGG 0.360185 1_4:-22992018 None:intergenic
TGTTCATCCTCAGTTGTTGC+TGG 0.371403 1_4:-22992024 None:intergenic
GCCGACACCGGTGTTGGTTC+GGG 0.371451 1_4:-22990092 None:intergenic
GTGATTCCTCTTGTGCAATC+TGG 0.373109 1_4:+22991110 Msa0156510:CDS
AGAGGCTGAGCGACGAGAAC+GGG 0.374296 1_4:-22990055 None:intergenic
TTTCGAGCCTTCATTTCCTC+AGG 0.376431 1_4:-22991750 None:intergenic
AGATTCATTACCTTCCTATA+TGG 0.380304 1_4:-22991641 None:intergenic
GGTTAAGGTTGAACCGGTTA+AGG 0.380420 1_4:+22990513 Msa0156510:CDS
TAACCCATTGCATATATTGT+AGG 0.382758 1_4:-22992327 None:intergenic
CGTGTCTCGACCAAACGTTC+TGG 0.385149 1_4:+22990886 Msa0156510:CDS
GGTTAAGGCTGAACCGGTTA+AGG 0.392088 1_4:+22990543 Msa0156510:CDS
TGATACACAGGAACCGGTTA+AGG 0.394567 1_4:+22990498 Msa0156510:CDS
AGCTGTGAGTGATGAAGTTA+GGG 0.397540 1_4:+22990642 Msa0156510:CDS
GGTTAAGGTTGAACCGGTTA+AGG 0.399768 1_4:+22990528 Msa0156510:CDS
TCTAACTGGAACACCACTTC+AGG 0.402583 1_4:+22993351 Msa0156510:CDS
GATGTTGTCTTGACAACTTA+TGG 0.404787 1_4:+22993086 Msa0156510:CDS
AATGACCACCCAGGCTCAAC+AGG 0.405635 1_4:-22990739 None:intergenic
CTGGCAGATGCAATGGGACT+TGG 0.405730 1_4:+22992622 Msa0156510:CDS
CCGAGTCTGTTGATACCTCT+TGG 0.408392 1_4:+22991543 Msa0156510:CDS
TGTTTGTCCTATGGCATTGT+TGG 0.408973 1_4:+22992795 Msa0156510:CDS
ATATACGTCAACATATTTAC+TGG 0.411869 1_4:+22992443 Msa0156510:CDS
CAAACCGGTTCAACCTTAAC+CGG 0.413985 1_4:-22990556 None:intergenic
TGTGCAATCTGGAAATGTTA+AGG 0.418183 1_4:+22991121 Msa0156510:CDS
TGATGAAGTAGAAGTGTTGA+AGG 0.418876 1_4:+22990603 Msa0156510:CDS
AGGAAATAATGTTGTTAGTA+AGG 0.421947 1_4:+22991189 Msa0156510:CDS
TCTTCTGACTTCGACCTGCC+TGG 0.426008 1_4:-22992682 None:intergenic
GATAGTGACAGTGAAGAAAG+TGG 0.429354 1_4:-22989949 None:intergenic
CATCAGACTCGTCGGAGTTA+GGG 0.434254 1_4:-22990147 None:intergenic
TTAACCGGTTCAACCTTAAC+CGG 0.442027 1_4:-22990511 None:intergenic
TCATACTCTAACAACAAATC+AGG 0.442295 1_4:-22993065 None:intergenic
ACCAGAGTCAAGCTCTGTAT+TGG 0.444501 1_4:+22992237 Msa0156510:CDS
TCAACCTCCGGCGGCGGAGA+AGG 0.445018 1_4:+22990249 Msa0156510:CDS
TCAGCTTTGAACAAACTTGT+TGG 0.445273 1_4:+22992060 Msa0156510:CDS
AGAGAAATCTACATCCTTGC+TGG 0.445334 1_4:+22992300 Msa0156510:CDS
TTAACCGGTTCAACCTTAAC+CGG 0.448681 1_4:-22990526 None:intergenic
TGAGGATGAACAAGCACTTT+CGG 0.449645 1_4:+22992035 Msa0156510:CDS
TCCATATTTGTTCATTATGG+TGG 0.450185 1_4:+22993026 Msa0156510:CDS
CTTGCCATCTGTGTTGCTTG+TGG 0.453973 1_4:-22992485 None:intergenic
GTTTGTCCTATGGCATTGTT+GGG 0.457591 1_4:+22992796 Msa0156510:CDS
TGGGAGGCTGCCAATGGAAT+GGG 0.459219 1_4:+22991079 Msa0156510:CDS
AACTCACCATCCTCAAGATT+CGG 0.461007 1_4:-22990715 None:intergenic
CCATATTTGTTCATTATGGT+GGG 0.461498 1_4:+22993027 Msa0156510:CDS
TTCTACTTCATCATCGCAAA+CGG 0.467167 1_4:-22990593 None:intergenic
TTAACCGGTTCAGCCTTAAC+CGG 0.471528 1_4:-22990541 None:intergenic
TTCGAGCCTTCATTTCCTCA+GGG 0.472305 1_4:-22991749 None:intergenic
CCTGTCAATAAGCGAAGAAA+AGG 0.473656 1_4:+22991985 Msa0156510:CDS
GGTTTGTGATACACAGGAAC+CGG 0.478184 1_4:+22990492 Msa0156510:CDS
CTCTGTTGTCACACTGCCGC+TGG 0.478379 1_4:+22993326 Msa0156510:CDS
TCCGCCACCTTCTCCGCCGC+CGG 0.478787 1_4:-22990256 None:intergenic
TGCTAGAGATTGAGCCATAT+AGG 0.482526 1_4:+22991627 Msa0156510:CDS
TAGTACCACTCCAGAACGTT+TGG 0.482761 1_4:-22990896 None:intergenic
GTGAGTTTCCTGTTGAGCCT+GGG 0.483079 1_4:+22990731 Msa0156510:CDS
GAGCCTGGGTGGTCATTGCT+TGG 0.483540 1_4:+22990745 Msa0156510:CDS
TGAACCGGTTAAGGCTGAAC+CGG 0.484926 1_4:+22990537 Msa0156510:CDS
TTGGGAGGCTGCCAATGGAA+TGG 0.486979 1_4:+22991078 Msa0156510:CDS
TGAACCGGTTAAGGTTGAAC+CGG 0.489926 1_4:+22990522 Msa0156510:CDS
TGAACCGGTTAAGGTTGAAC+CGG 0.489926 1_4:+22990552 Msa0156510:CDS
CAATAGTAGCCTCAGCAACC+TGG 0.495639 1_4:-22993303 None:intergenic
ACATTTCCAGATTGCACAAG+AGG 0.497026 1_4:-22991116 None:intergenic
TGATGAATCGTTGAAATCAA+TGG 0.499328 1_4:+22990363 Msa0156510:CDS
CTGGGTGGTCATTGCTTGGA+AGG 0.500456 1_4:+22990749 Msa0156510:CDS
ATTGCTACTTCTACTGCTAA+AGG 0.502889 1_4:+22990781 Msa0156510:CDS
TAGATTCTGGCAGATGCAAT+GGG 0.503329 1_4:+22992616 Msa0156510:intron
ATAGATTCTGGCAGATGCAA+TGG 0.504307 1_4:+22992615 Msa0156510:intron
CATATTTGTTCATTATGGTG+GGG 0.508018 1_4:+22993028 Msa0156510:CDS
TGCTAAAGGAGTGAGGAGAT+TGG 0.509535 1_4:+22990795 Msa0156510:CDS
GGAACCGGTTAAGGTTGAAC+CGG 0.509703 1_4:+22990507 Msa0156510:CDS
CAGCCTACAATATATGCAAT+GGG 0.512274 1_4:+22992324 Msa0156510:CDS
AGAAGTGTTGAAGGTAGTGA+AGG 0.512634 1_4:+22990612 Msa0156510:CDS
ACCTCCGGCGGCGGAGAAGG+TGG 0.514255 1_4:+22990252 Msa0156510:CDS
GCCCGAACCAACACCGGTGT+CGG 0.517808 1_4:+22990091 Msa0156510:CDS
CTAGCACCACTCTGTACCAT+TGG 0.520086 1_4:-22993249 None:intergenic
CACCGGTGTTGGTTCGGGCA+CGG 0.521625 1_4:-22990087 None:intergenic
GAGAGAATAGCATCTACCAC+AGG 0.525859 1_4:+22993224 Msa0156510:CDS
TATAAAATCCCATAAAAGCC+AGG 0.528721 1_4:+22993285 Msa0156510:CDS
TCTGGAAATGTTAAGGTTCG+AGG 0.529804 1_4:+22991128 Msa0156510:CDS
ATACATCGTATAAGTTTCAA+TGG 0.530401 1_4:+22990857 Msa0156510:CDS
TTTCACCCCTGAGGAAATGA+AGG 0.530628 1_4:+22991743 Msa0156510:CDS
TTTGAAGACGGTGAAGAAGG+AGG 0.534810 1_4:+22990666 Msa0156510:CDS
GAAGTGTTGAAGGTAGTGAA+GGG 0.536933 1_4:+22990613 Msa0156510:CDS
GCACTGATTCTTAGTAATCC+AGG 0.539303 1_4:+22992664 Msa0156510:CDS
AGCTGCAGAAGTCTTTGACC+TGG 0.540849 1_4:+22992083 Msa0156510:CDS
TCCGGCGGCGGAGAAGGTGG+CGG 0.545490 1_4:+22990255 Msa0156510:CDS
GTTGGTTCGGGCACGGACGA+CGG 0.546455 1_4:-22990080 None:intergenic
GAGAGGCTGAGCGACGAGAA+CGG 0.548658 1_4:-22990056 None:intergenic
ATATTTGTTCATTATGGTGG+GGG 0.549272 1_4:+22993029 Msa0156510:CDS
GCCACCTTCTCCGCCGCCGG+AGG 0.549713 1_4:-22990253 None:intergenic
CTATGGCATTGTTGGGTCAG+TGG 0.549859 1_4:+22992803 Msa0156510:CDS
GCGAGAATCGGTGAAATCAA+AGG 0.549871 1_4:+22990447 Msa0156510:CDS
CGGGCACGGACGACGGTGAG+AGG 0.550805 1_4:-22990073 None:intergenic
GGAAATGAAGGCTCGAAAGC+GGG 0.551477 1_4:+22991755 Msa0156510:CDS
TCCAATACAGAGCTTGACTC+TGG 0.552781 1_4:-22992238 None:intergenic
ACAGATTTAGCCCATTCCAT+TGG 0.557887 1_4:-22991089 None:intergenic
TCAGCCTACAATATATGCAA+TGG 0.557968 1_4:+22992323 Msa0156510:CDS
AGGAAATGAAGGCTCGAAAG+CGG 0.559282 1_4:+22991754 Msa0156510:CDS
GTCCGTGCCCGAACCAACAC+CGG 0.561375 1_4:+22990085 Msa0156510:CDS
TACAGAGCTTGACTCTGGTA+AGG 0.562707 1_4:-22992233 None:intergenic
TCCTGATAATTAACCTGAAG+TGG 0.565478 1_4:-22993364 None:intergenic
AAAGGTTGGGAGGCTGCCAA+TGG 0.570834 1_4:+22991073 Msa0156510:intron
CAGATTCCGAATCTTGAGGA+TGG 0.573996 1_4:+22990709 Msa0156510:CDS
ACTACACATCAGTGTCTTTG+GGG 0.576822 1_4:-22992204 None:intergenic
GATTCAGATTCCGAATCTTG+AGG 0.577226 1_4:+22990705 Msa0156510:CDS
AAGTGTTGAAGGTAGTGAAG+GGG 0.579668 1_4:+22990614 Msa0156510:CDS
CACCTTCTAAATTAGACGAA+GGG 0.580704 1_4:-22992762 None:intergenic
GTATAAGCTTGAAATGATGC+AGG 0.584041 1_4:+22991169 Msa0156510:CDS
ACAAATATGGATATGCTGCC+TGG 0.586898 1_4:-22993014 None:intergenic
CTTGAAACGCATTCAAAACC+AGG 0.587458 1_4:+22992996 Msa0156510:CDS
CGCCGGAGGTTGAAAAGCGA+CGG 0.587591 1_4:-22990239 None:intergenic
CCAAGAGGTATCAACAGACT+CGG 0.588986 1_4:-22991543 None:intergenic
CCATAAAAGCCAGGTTGCTG+AGG 0.591793 1_4:+22993294 Msa0156510:CDS
CCTTCGTCTAATTTAGAAGG+TGG 0.593978 1_4:+22992763 Msa0156510:CDS
TGATACCTCTTGGAGACTAG+AGG 0.594585 1_4:+22991553 Msa0156510:CDS
TCGAAGTCAGAAGACAGTGA+TGG 0.598280 1_4:+22992691 Msa0156510:CDS
GCGAACGCCGACACCGGTGT+TGG 0.601442 1_4:-22990098 None:intergenic
GGTGTGTTGTAAAGGTTGGG+AGG 0.608735 1_4:+22991063 Msa0156510:intron
GGCATTGTTGGGTCAGTGGA+AGG 0.612561 1_4:+22992807 Msa0156510:CDS
GCATCTACCACAGGGTCCAA+TGG 0.612645 1_4:+22993233 Msa0156510:CDS
CGTCAACATATTTACTGGAG+AGG 0.615150 1_4:+22992448 Msa0156510:CDS
TGCAGAAGTCTTTGACCTGG+AGG 0.615592 1_4:+22992086 Msa0156510:CDS
ATTTCCACAAGCAACACAGA+TGG 0.621081 1_4:+22992481 Msa0156510:CDS
AGAGATTGAGCCATATAGGA+AGG 0.621596 1_4:+22991631 Msa0156510:CDS
CTCTGTACCATTGGACCCTG+TGG 0.622668 1_4:-22993240 None:intergenic
TGATTCTTAGTAATCCAGGC+AGG 0.623524 1_4:+22992668 Msa0156510:CDS
TGAATCAACGATTCAAACGA+AGG 0.623902 1_4:+22990390 Msa0156510:CDS
AGTTTCCTGTTGAGCCTGGG+TGG 0.623936 1_4:+22990734 Msa0156510:CDS
TTTGCATGCATCAGACTCGT+CGG 0.625329 1_4:-22990155 None:intergenic
GAAGGTGGCGGAGTGTAAGA+CGG 0.627090 1_4:+22990267 Msa0156510:CDS
TCGAGCCTTCATTTCCTCAG+GGG 0.629672 1_4:-22991748 None:intergenic
CAAGCAACACAGATGGCAAG+AGG 0.631120 1_4:+22992488 Msa0156510:CDS
CCACCTTCTAAATTAGACGA+AGG 0.631266 1_4:-22992763 None:intergenic
CACTGACCCAACAATGCCAT+AGG 0.631687 1_4:-22992802 None:intergenic
GAGGCTGAGCGACGAGAACG+GGG 0.635360 1_4:-22990054 None:intergenic
CTCGACCAAACGTTCTGGAG+TGG 0.641808 1_4:+22990891 Msa0156510:CDS
GAGAACGCGAACGCCGACAC+CGG 0.646491 1_4:-22990104 None:intergenic
CTTCCAAGCAATGACCACCC+AGG 0.648174 1_4:-22990748 None:intergenic
GCAACACAGATGGCAAGAGG+AGG 0.648362 1_4:+22992491 Msa0156510:CDS
TATACGGCGTAGCAATGCAT+CGG 0.649387 1_4:-22991151 None:intergenic
GAACGTGGTTTGTGATACAC+AGG 0.657147 1_4:+22990486 Msa0156510:CDS
TCTTGGAGACTAGAGGCTTG+TGG 0.657160 1_4:+22991560 Msa0156510:CDS
CTTCTACTGCTAAAGGAGTG+AGG 0.658816 1_4:+22990788 Msa0156510:CDS
TGAAACTTATACGATGTATG+CGG 0.662039 1_4:-22990853 None:intergenic
TCAAACGCAAGCATCGAACG+TGG 0.667645 1_4:-22990301 None:intergenic
GTGTTCCAGTTAGACACCAG+CGG 0.680938 1_4:-22993342 None:intergenic
ACAAGCCTCTAGTCTCCAAG+AGG 0.682826 1_4:-22991558 None:intergenic
ATATTTAACAGTGTAAGCAG+TGG 0.685796 1_4:-22991605 None:intergenic
AGAGAATAGCATCTACCACA+GGG 0.698579 1_4:+22993225 Msa0156510:CDS
GCCACTTCCAGCAACAACTG+AGG 0.699488 1_4:+22992017 Msa0156510:CDS
AGAAGTTGCTAATCTGAACG+TGG 0.704739 1_4:+22990471 Msa0156510:CDS
ATATTGTAGGCTGACCAGCA+AGG 0.716176 1_4:-22992314 None:intergenic
CTAGGCTGATTTCACCCCTG+AGG 0.737779 1_4:+22991734 Msa0156510:intron
CAGGGTCCAATGGTACAGAG+TGG 0.752658 1_4:+22993243 Msa0156510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAGTAGAAAATTTTTT+AGG - chr1_4:22989983-22990002 None:intergenic 10.0%
!!! AAAAAGTTACATTTTTGTTA+TGG + chr1_4:22990930-22990949 Msa0156510:intron 15.0%
!!! ATATTTTTTGTTGAGTTTAT+TGG + chr1_4:22991462-22991481 Msa0156510:intron 15.0%
!!! TTATTTCTATAATGATATCA+AGG - chr1_4:22992395-22992414 None:intergenic 15.0%
!!! ATTTTTTTCTTTATAGATTC+TGG + chr1_4:22992603-22992622 Msa0156510:intron 15.0%
!! TCAATTAATATTTAAGTGAA+AGG + chr1_4:22992940-22992959 Msa0156510:intron 15.0%
!!! GTGATATATTTTTGTTATGT+TGG + chr1_4:22991042-22991061 Msa0156510:intron 20.0%
!!! TAAGTAATTTCTGGTTTATT+TGG + chr1_4:22991214-22991233 Msa0156510:intron 20.0%
!! AAACATACAAAAAACACTTA+AGG - chr1_4:22991340-22991359 None:intergenic 20.0%
!!! AACAAACTTTGAGAAAATTA+AGG + chr1_4:22991392-22991411 Msa0156510:intron 20.0%
!! AACTCAACAAAAAATATCTT+TGG - chr1_4:22991459-22991478 None:intergenic 20.0%
!!! AACCTAATTGATACATTTTT+GGG + chr1_4:22991491-22991510 Msa0156510:intron 20.0%
!!! TAAGTTTGTTATTTCTAACT+AGG + chr1_4:22991716-22991735 Msa0156510:intron 20.0%
!! AAGCTACAAACAATTAAAAA+GGG - chr1_4:22991817-22991836 None:intergenic 20.0%
!! AAAGCTACAAACAATTAAAA+AGG - chr1_4:22991818-22991837 None:intergenic 20.0%
!! GTAATATGAACAGAAAAATT+AGG - chr1_4:22991935-22991954 None:intergenic 20.0%
!! AAGATATGAAAGACATAAAA+AGG - chr1_4:22992171-22992190 None:intergenic 20.0%
!! TTTATGTCTTTCATATCTTT+AGG + chr1_4:22992172-22992191 Msa0156510:intron 20.0%
!! ATATCCATATTTGTTCATTA+TGG + chr1_4:22993023-22993042 Msa0156510:CDS 20.0%
!!! TTTTTTCTTCTTCAGCAAAA+TGG + chr1_4:22990000-22990019 Msa0156510:exon 25.0%
! ATACATCGTATAAGTTTCAA+TGG + chr1_4:22990857-22990876 Msa0156510:CDS 25.0%
!!! GATTCTTTTGATGTTTTTGT+TGG + chr1_4:22991007-22991026 Msa0156510:intron 25.0%
! AGGAAATAATGTTGTTAGTA+AGG + chr1_4:22991189-22991208 Msa0156510:CDS 25.0%
! AGTAAGGTATAAGTAATTTC+TGG + chr1_4:22991205-22991224 Msa0156510:intron 25.0%
!!! GTTTATTTGGTTAGTTTAGT+TGG + chr1_4:22991227-22991246 Msa0156510:intron 25.0%
!!! TGAAAGCTTTCACTTTTATT+TGG + chr1_4:22991261-22991280 Msa0156510:intron 25.0%
!!! TTTGGTTTTTTGTGTTCTAT+TGG + chr1_4:22991279-22991298 Msa0156510:intron 25.0%
!!! ACTTAAAAGTACACTTTTTG+AGG + chr1_4:22991361-22991380 Msa0156510:intron 25.0%
!! GAACCTAATTGATACATTTT+TGG + chr1_4:22991490-22991509 Msa0156510:intron 25.0%
! AAACAATATGTGCATATTAG+AGG + chr1_4:22991909-22991928 Msa0156510:intron 25.0%
! ATATACGTCAACATATTTAC+TGG + chr1_4:22992443-22992462 Msa0156510:CDS 25.0%
!!! TGTAGAGTTCTAAAATTTGA+TGG - chr1_4:22992534-22992553 None:intergenic 25.0%
! AGTTAGATAAACAGTTGAAA+CGG - chr1_4:22992566-22992585 None:intergenic 25.0%
!!! ACAATATTTTTTCAGCTAAG+AGG + chr1_4:22992728-22992747 Msa0156510:CDS 25.0%
! TACAAGTATTCAAAATCTTC+AGG + chr1_4:22992968-22992987 Msa0156510:intron 25.0%
! GCTTCATTTTCAAATTCTTG+AGG - chr1_4:22990208-22990227 None:intergenic 30.0%
TGATGAATCGTTGAAATCAA+TGG + chr1_4:22990363-22990382 Msa0156510:CDS 30.0%
TGAAACTTATACGATGTATG+CGG - chr1_4:22990856-22990875 None:intergenic 30.0%
!! CTTTTGATGTTTTTGTTGGA+AGG + chr1_4:22991011-22991030 Msa0156510:intron 30.0%
TGCATCATTTCAAGCTTATA+CGG - chr1_4:22991170-22991189 None:intergenic 30.0%
TGCCCAAAAATGTATCAATT+AGG - chr1_4:22991496-22991515 None:intergenic 30.0%
ATATTTAACAGTGTAAGCAG+TGG - chr1_4:22991608-22991627 None:intergenic 30.0%
AGATTCATTACCTTCCTATA+TGG - chr1_4:22991644-22991663 None:intergenic 30.0%
! AACACATTTTATATACCTCC+AGG - chr1_4:22992104-22992123 None:intergenic 30.0%
GTGTTCCAATTTCAATTGTT+TGG + chr1_4:22992119-22992138 Msa0156510:intron 30.0%
! TCTTTCATATCTTTAGGAGA+AGG + chr1_4:22992178-22992197 Msa0156510:intron 30.0%
TAACCCATTGCATATATTGT+AGG - chr1_4:22992330-22992349 None:intergenic 30.0%
! AGAAGCTTAAATTTGCTTGA+GGG - chr1_4:22992371-22992390 None:intergenic 30.0%
! TAGAAGCTTAAATTTGCTTG+AGG - chr1_4:22992372-22992391 None:intergenic 30.0%
!! AACTTGCCATACTTTTTAAC+AGG + chr1_4:22992414-22992433 Msa0156510:intron 30.0%
!!! ATATTTTTTCAGCTAAGAGG+AGG + chr1_4:22992731-22992750 Msa0156510:CDS 30.0%
CACTTTAATTGTTTGTCCTA+TGG + chr1_4:22992786-22992805 Msa0156510:CDS 30.0%
TCTAATTGTCCTAATTAGAG+AGG - chr1_4:22992840-22992859 None:intergenic 30.0%
TCCATATTTGTTCATTATGG+TGG + chr1_4:22993026-22993045 Msa0156510:CDS 30.0%
CCATATTTGTTCATTATGGT+GGG + chr1_4:22993027-22993046 Msa0156510:CDS 30.0%
CATATTTGTTCATTATGGTG+GGG + chr1_4:22993028-22993047 Msa0156510:CDS 30.0%
ATATTTGTTCATTATGGTGG+GGG + chr1_4:22993029-22993048 Msa0156510:CDS 30.0%
TAACAACAAATCAGGATTAC+TGG - chr1_4:22993060-22993079 None:intergenic 30.0%
TCATACTCTAACAACAAATC+AGG - chr1_4:22993068-22993087 None:intergenic 30.0%
! CACTTTTATAAGAAGCTGAT+AGG - chr1_4:22993115-22993134 None:intergenic 30.0%
! CAGCTTCTTATAAAAGTGTA+AGG + chr1_4:22993117-22993136 Msa0156510:intron 30.0%
ACAGTGAAGTTTCATTACAT+TGG + chr1_4:22993175-22993194 Msa0156510:intron 30.0%
CAGTGAAGTTTCATTACATT+GGG + chr1_4:22993176-22993195 Msa0156510:intron 30.0%
TATAAAATCCCATAAAAGCC+AGG + chr1_4:22993285-22993304 Msa0156510:CDS 30.0%
!!! GACGATGTCGTTTTTAGAAA+CGG + chr1_4:22990028-22990047 Msa0156510:CDS 35.0%
TGAATCAACGATTCAAACGA+AGG + chr1_4:22990390-22990409 Msa0156510:CDS 35.0%
TTCTACTTCATCATCGCAAA+CGG - chr1_4:22990596-22990615 None:intergenic 35.0%
!! TGATGAAGTAGAAGTGTTGA+AGG + chr1_4:22990603-22990622 Msa0156510:CDS 35.0%
!!! TGAAGTTAGGGTTTTGAAGA+CGG + chr1_4:22990654-22990673 Msa0156510:CDS 35.0%
! ATTGCTACTTCTACTGCTAA+AGG + chr1_4:22990781-22990800 Msa0156510:CDS 35.0%
TTATACGATGTATGCGGATT+CGG - chr1_4:22990850-22990869 None:intergenic 35.0%
GTTATGTTGGTGTGTTGTAA+AGG + chr1_4:22991055-22991074 Msa0156510:intron 35.0%
TGTGCAATCTGGAAATGTTA+AGG + chr1_4:22991121-22991140 Msa0156510:CDS 35.0%
GTATAAGCTTGAAATGATGC+AGG + chr1_4:22991169-22991188 Msa0156510:CDS 35.0%
CATAGCTAGTTAAGAACCAT+AGG + chr1_4:22991426-22991445 Msa0156510:intron 35.0%
! TATCTTTGGTGCATTTCCTA+TGG - chr1_4:22991445-22991464 None:intergenic 35.0%
!! TCAGCTTTGAACAAACTTGT+TGG + chr1_4:22992060-22992079 Msa0156510:CDS 35.0%
TGCAGCCAAACAATTGAAAT+TGG - chr1_4:22992127-22992146 None:intergenic 35.0%
TTGGATGACAAAAATCGAGA+AGG + chr1_4:22992256-22992275 Msa0156510:CDS 35.0%
TGGATGACAAAAATCGAGAA+GGG + chr1_4:22992257-22992276 Msa0156510:CDS 35.0%
TCAGCCTACAATATATGCAA+TGG + chr1_4:22992323-22992342 Msa0156510:CDS 35.0%
CAGCCTACAATATATGCAAT+GGG + chr1_4:22992324-22992343 Msa0156510:CDS 35.0%
!! TTGCCATACTTTTTAACAGG+AGG + chr1_4:22992417-22992436 Msa0156510:intron 35.0%
TGACCTCCTGTTAAAAAGTA+TGG - chr1_4:22992423-22992442 None:intergenic 35.0%
AACCCTTCGTCTAATTTAGA+AGG + chr1_4:22992760-22992779 Msa0156510:CDS 35.0%
CACCTTCTAAATTAGACGAA+GGG - chr1_4:22992765-22992784 None:intergenic 35.0%
CCCACCATAATGAACAAATA+TGG - chr1_4:22993030-22993049 None:intergenic 35.0%
GATGTTGTCTTGACAACTTA+TGG + chr1_4:22993086-22993105 Msa0156510:CDS 35.0%
!!! GTTTCCTGATTTTTGAAACC+AGG + chr1_4:22993198-22993217 Msa0156510:intron 35.0%
CTTTCCTGGTTTCAAAAATC+AGG - chr1_4:22993205-22993224 None:intergenic 35.0%
! ACCACTTCAGGTTAATTATC+AGG + chr1_4:22993363-22993382 Msa0156510:CDS 35.0%
TCCTGATAATTAACCTGAAG+TGG - chr1_4:22993367-22993386 None:intergenic 35.0%
!!! TCGGAGTTAGGGTTTTGATT+CGG - chr1_4:22990139-22990158 None:intergenic 40.0%
! AGTTTTCGAAACGCGAGAAT+CGG + chr1_4:22990435-22990454 Msa0156510:CDS 40.0%
AGAAGTTGCTAATCTGAACG+TGG + chr1_4:22990471-22990490 Msa0156510:CDS 40.0%
! TTAACCGGTTCAACCTTAAC+CGG - chr1_4:22990514-22990533 None:intergenic 40.0%
! TTAACCGGTTCAACCTTAAC+CGG - chr1_4:22990514-22990533 None:intergenic 40.0%
! GTTTTCTTCTCTGCACAAAC+CGG - chr1_4:22990574-22990593 None:intergenic 40.0%
!! AGAAGTGTTGAAGGTAGTGA+AGG + chr1_4:22990612-22990631 Msa0156510:CDS 40.0%
!! GAAGTGTTGAAGGTAGTGAA+GGG + chr1_4:22990613-22990632 Msa0156510:CDS 40.0%
!! AAGTGTTGAAGGTAGTGAAG+GGG + chr1_4:22990614-22990633 Msa0156510:CDS 40.0%
AAGCTGTGAGTGATGAAGTT+AGG + chr1_4:22990641-22990660 Msa0156510:CDS 40.0%
AGCTGTGAGTGATGAAGTTA+GGG + chr1_4:22990642-22990661 Msa0156510:CDS 40.0%
GATTCAGATTCCGAATCTTG+AGG + chr1_4:22990705-22990724 Msa0156510:CDS 40.0%
AACTCACCATCCTCAAGATT+CGG - chr1_4:22990718-22990737 None:intergenic 40.0%
TGTTGGTGTGTTGTAAAGGT+TGG + chr1_4:22991059-22991078 Msa0156510:intron 40.0%
GTTGGTGTGTTGTAAAGGTT+GGG + chr1_4:22991060-22991079 Msa0156510:intron 40.0%
ACAGATTTAGCCCATTCCAT+TGG - chr1_4:22991092-22991111 None:intergenic 40.0%
ACATTTCCAGATTGCACAAG+AGG - chr1_4:22991119-22991138 None:intergenic 40.0%
TCTGGAAATGTTAAGGTTCG+AGG + chr1_4:22991128-22991147 Msa0156510:CDS 40.0%
TGCTAGAGATTGAGCCATAT+AGG + chr1_4:22991627-22991646 Msa0156510:CDS 40.0%
AGAGATTGAGCCATATAGGA+AGG + chr1_4:22991631-22991650 Msa0156510:CDS 40.0%
AAACTTCATCTGAGTCAAGC+TGG - chr1_4:22991957-22991976 None:intergenic 40.0%
! CCTTTTCTTCGCTTATTGAC+AGG - chr1_4:22991988-22992007 None:intergenic 40.0%
CCTGTCAATAAGCGAAGAAA+AGG + chr1_4:22991985-22992004 Msa0156510:CDS 40.0%
TGAGGATGAACAAGCACTTT+CGG + chr1_4:22992035-22992054 Msa0156510:CDS 40.0%
ACTACACATCAGTGTCTTTG+GGG - chr1_4:22992207-22992226 None:intergenic 40.0%
GACTACACATCAGTGTCTTT+GGG - chr1_4:22992208-22992227 None:intergenic 40.0%
AGACTACACATCAGTGTCTT+TGG - chr1_4:22992209-22992228 None:intergenic 40.0%
ATGACAAAAATCGAGAAGGG+AGG + chr1_4:22992260-22992279 Msa0156510:CDS 40.0%
AGAGAAATCTACATCCTTGC+TGG + chr1_4:22992300-22992319 Msa0156510:CDS 40.0%
! GGGTTAGTACAAATAGTACG+TGG + chr1_4:22992344-22992363 Msa0156510:intron 40.0%
CGTCAACATATTTACTGGAG+AGG + chr1_4:22992448-22992467 Msa0156510:CDS 40.0%
ATTTCCACAAGCAACACAGA+TGG + chr1_4:22992481-22992500 Msa0156510:CDS 40.0%
ATAGATTCTGGCAGATGCAA+TGG + chr1_4:22992615-22992634 Msa0156510:intron 40.0%
TAGATTCTGGCAGATGCAAT+GGG + chr1_4:22992616-22992635 Msa0156510:intron 40.0%
!! GCACTGATTCTTAGTAATCC+AGG + chr1_4:22992664-22992683 Msa0156510:CDS 40.0%
TGATTCTTAGTAATCCAGGC+AGG + chr1_4:22992668-22992687 Msa0156510:CDS 40.0%
CCACCTTCTAAATTAGACGA+AGG - chr1_4:22992766-22992785 None:intergenic 40.0%
CCTTCGTCTAATTTAGAAGG+TGG + chr1_4:22992763-22992782 Msa0156510:CDS 40.0%
TGTTTGTCCTATGGCATTGT+TGG + chr1_4:22992795-22992814 Msa0156510:CDS 40.0%
GTTTGTCCTATGGCATTGTT+GGG + chr1_4:22992796-22992815 Msa0156510:CDS 40.0%
GGTGAGATTCCTCTCTAATT+AGG + chr1_4:22992828-22992847 Msa0156510:intron 40.0%
CTTGAAACGCATTCAAAACC+AGG + chr1_4:22992996-22993015 Msa0156510:CDS 40.0%
ACAAATATGGATATGCTGCC+TGG - chr1_4:22993017-22993036 None:intergenic 40.0%
AGATGCTATTCTCTCTTTCC+TGG - chr1_4:22993219-22993238 None:intergenic 40.0%
AGAGAATAGCATCTACCACA+GGG + chr1_4:22993225-22993244 Msa0156510:CDS 40.0%
!!! GAGTTAGGGTTTTGATTCGG+TGG - chr1_4:22990136-22990155 None:intergenic 45.0%
TTTGCATGCATCAGACTCGT+CGG - chr1_4:22990158-22990177 None:intergenic 45.0%
GCGAGAATCGGTGAAATCAA+AGG + chr1_4:22990447-22990466 Msa0156510:CDS 45.0%
! GAACGTGGTTTGTGATACAC+AGG + chr1_4:22990486-22990505 Msa0156510:CDS 45.0%
GGTTTGTGATACACAGGAAC+CGG + chr1_4:22990492-22990511 Msa0156510:CDS 45.0%
TGATACACAGGAACCGGTTA+AGG + chr1_4:22990498-22990517 Msa0156510:CDS 45.0%
GGTTAAGGTTGAACCGGTTA+AGG + chr1_4:22990513-22990532 Msa0156510:CDS 45.0%
TGAACCGGTTAAGGTTGAAC+CGG + chr1_4:22990522-22990541 Msa0156510:CDS 45.0%
GGTTAAGGTTGAACCGGTTA+AGG + chr1_4:22990513-22990532 Msa0156510:CDS 45.0%
! TTAACCGGTTCAGCCTTAAC+CGG - chr1_4:22990544-22990563 None:intergenic 45.0%
TGAACCGGTTAAGGTTGAAC+CGG + chr1_4:22990522-22990541 Msa0156510:CDS 45.0%
! CAAACCGGTTCAACCTTAAC+CGG - chr1_4:22990559-22990578 None:intergenic 45.0%
!!! GGTTTTGAAGACGGTGAAGA+AGG + chr1_4:22990663-22990682 Msa0156510:CDS 45.0%
TTTGAAGACGGTGAAGAAGG+AGG + chr1_4:22990666-22990685 Msa0156510:CDS 45.0%
CAGATTCCGAATCTTGAGGA+TGG + chr1_4:22990709-22990728 Msa0156510:CDS 45.0%
CTTCTACTGCTAAAGGAGTG+AGG + chr1_4:22990788-22990807 Msa0156510:CDS 45.0%
TGCTAAAGGAGTGAGGAGAT+TGG + chr1_4:22990795-22990814 Msa0156510:CDS 45.0%
TAGTACCACTCCAGAACGTT+TGG - chr1_4:22990899-22990918 None:intergenic 45.0%
GTGATTCCTCTTGTGCAATC+TGG + chr1_4:22991110-22991129 Msa0156510:CDS 45.0%
TATACGGCGTAGCAATGCAT+CGG - chr1_4:22991154-22991173 None:intergenic 45.0%
!! CCAAGAGGTATCAACAGACT+CGG - chr1_4:22991546-22991565 None:intergenic 45.0%
TGATACCTCTTGGAGACTAG+AGG + chr1_4:22991553-22991572 Msa0156510:CDS 45.0%
TTTCACCCCTGAGGAAATGA+AGG + chr1_4:22991743-22991762 Msa0156510:CDS 45.0%
TTCGAGCCTTCATTTCCTCA+GGG - chr1_4:22991752-22991771 None:intergenic 45.0%
TTTCGAGCCTTCATTTCCTC+AGG - chr1_4:22991753-22991772 None:intergenic 45.0%
AGGAAATGAAGGCTCGAAAG+CGG + chr1_4:22991754-22991773 Msa0156510:CDS 45.0%
TGTTCATCCTCAGTTGTTGC+TGG - chr1_4:22992027-22992046 None:intergenic 45.0%
TACAGAGCTTGACTCTGGTA+AGG - chr1_4:22992236-22992255 None:intergenic 45.0%
ACCAGAGTCAAGCTCTGTAT+TGG + chr1_4:22992237-22992256 Msa0156510:CDS 45.0%
TCCAATACAGAGCTTGACTC+TGG - chr1_4:22992241-22992260 None:intergenic 45.0%
ATATTGTAGGCTGACCAGCA+AGG - chr1_4:22992317-22992336 None:intergenic 45.0%
TCGAAGTCAGAAGACAGTGA+TGG + chr1_4:22992691-22992710 Msa0156510:CDS 45.0%
GAGAGAATAGCATCTACCAC+AGG + chr1_4:22993224-22993243 Msa0156510:CDS 45.0%
!! CTCAGCAACCTGGCTTTTAT+GGG - chr1_4:22993296-22993315 None:intergenic 45.0%
TCTAACTGGAACACCACTTC+AGG + chr1_4:22993351-22993370 Msa0156510:CDS 45.0%
CATCAGACTCGTCGGAGTTA+GGG - chr1_4:22990150-22990169 None:intergenic 50.0%
!! TCAAACGCAAGCATCGAACG+TGG - chr1_4:22990304-22990323 None:intergenic 50.0%
GGAACCGGTTAAGGTTGAAC+CGG + chr1_4:22990507-22990526 Msa0156510:CDS 50.0%
TGAACCGGTTAAGGCTGAAC+CGG + chr1_4:22990537-22990556 Msa0156510:CDS 50.0%
GGTTAAGGCTGAACCGGTTA+AGG + chr1_4:22990543-22990562 Msa0156510:CDS 50.0%
GTGAGTTTCCTGTTGAGCCT+GGG + chr1_4:22990731-22990750 Msa0156510:CDS 50.0%
GGTGTGTTGTAAAGGTTGGG+AGG + chr1_4:22991063-22991082 Msa0156510:intron 50.0%
CCGAGTCTGTTGATACCTCT+TGG + chr1_4:22991543-22991562 Msa0156510:CDS 50.0%
ACAAGCCTCTAGTCTCCAAG+AGG - chr1_4:22991561-22991580 None:intergenic 50.0%
TCTTGGAGACTAGAGGCTTG+TGG + chr1_4:22991560-22991579 Msa0156510:CDS 50.0%
TCGAGCCTTCATTTCCTCAG+GGG - chr1_4:22991751-22991770 None:intergenic 50.0%
GGAAATGAAGGCTCGAAAGC+GGG + chr1_4:22991755-22991774 Msa0156510:CDS 50.0%
TCCTCAGTTGTTGCTGGAAG+TGG - chr1_4:22992021-22992040 None:intergenic 50.0%
AGCTGCAGAAGTCTTTGACC+TGG + chr1_4:22992083-22992102 Msa0156510:CDS 50.0%
TGCAGAAGTCTTTGACCTGG+AGG + chr1_4:22992086-22992105 Msa0156510:CDS 50.0%
!! CTTGCCATCTGTGTTGCTTG+TGG - chr1_4:22992488-22992507 None:intergenic 50.0%
CAAGCAACACAGATGGCAAG+AGG + chr1_4:22992488-22992507 Msa0156510:CDS 50.0%
CACTGACCCAACAATGCCAT+AGG - chr1_4:22992805-22992824 None:intergenic 50.0%
CTATGGCATTGTTGGGTCAG+TGG + chr1_4:22992803-22992822 Msa0156510:CDS 50.0%
CTAGCACCACTCTGTACCAT+TGG - chr1_4:22993252-22993271 None:intergenic 50.0%
!! CCTCAGCAACCTGGCTTTTA+TGG - chr1_4:22993297-22993316 None:intergenic 50.0%
CCATAAAAGCCAGGTTGCTG+AGG + chr1_4:22993294-22993313 Msa0156510:CDS 50.0%
CAATAGTAGCCTCAGCAACC+TGG - chr1_4:22993306-22993325 None:intergenic 50.0%
GTGTTCCAGTTAGACACCAG+CGG - chr1_4:22993345-22993364 None:intergenic 50.0%
GCATCAGACTCGTCGGAGTT+AGG - chr1_4:22990151-22990170 None:intergenic 55.0%
!!! CACCGTCGCTTTTCAACCTC+CGG + chr1_4:22990237-22990256 Msa0156510:CDS 55.0%
!! GAAGGTGGCGGAGTGTAAGA+CGG + chr1_4:22990267-22990286 Msa0156510:CDS 55.0%
GGTGAGTTTCCTGTTGAGCC+TGG + chr1_4:22990730-22990749 Msa0156510:CDS 55.0%
AGTTTCCTGTTGAGCCTGGG+TGG + chr1_4:22990734-22990753 Msa0156510:CDS 55.0%
AATGACCACCCAGGCTCAAC+AGG - chr1_4:22990742-22990761 None:intergenic 55.0%
CTTCCAAGCAATGACCACCC+AGG - chr1_4:22990751-22990770 None:intergenic 55.0%
CTGGGTGGTCATTGCTTGGA+AGG + chr1_4:22990749-22990768 Msa0156510:CDS 55.0%
CGTGTCTCGACCAAACGTTC+TGG + chr1_4:22990886-22990905 Msa0156510:CDS 55.0%
!! CTCGACCAAACGTTCTGGAG+TGG + chr1_4:22990891-22990910 Msa0156510:CDS 55.0%
AAAGGTTGGGAGGCTGCCAA+TGG + chr1_4:22991073-22991092 Msa0156510:intron 55.0%
TTGGGAGGCTGCCAATGGAA+TGG + chr1_4:22991078-22991097 Msa0156510:CDS 55.0%
TGGGAGGCTGCCAATGGAAT+GGG + chr1_4:22991079-22991098 Msa0156510:CDS 55.0%
! CTAGGCTGATTTCACCCCTG+AGG + chr1_4:22991734-22991753 Msa0156510:intron 55.0%
GCCACTTCCAGCAACAACTG+AGG + chr1_4:22992017-22992036 Msa0156510:CDS 55.0%
GCAACACAGATGGCAAGAGG+AGG + chr1_4:22992491-22992510 Msa0156510:CDS 55.0%
CTGGCAGATGCAATGGGACT+TGG + chr1_4:22992622-22992641 Msa0156510:CDS 55.0%
TCTTCTGACTTCGACCTGCC+TGG - chr1_4:22992685-22992704 None:intergenic 55.0%
GGCATTGTTGGGTCAGTGGA+AGG + chr1_4:22992807-22992826 Msa0156510:CDS 55.0%
GCATCTACCACAGGGTCCAA+TGG + chr1_4:22993233-22993252 Msa0156510:CDS 55.0%
CTCTGTACCATTGGACCCTG+TGG - chr1_4:22993243-22993262 None:intergenic 55.0%
CAGGGTCCAATGGTACAGAG+TGG + chr1_4:22993243-22993262 Msa0156510:CDS 55.0%
AGAGGCTGAGCGACGAGAAC+GGG - chr1_4:22990058-22990077 None:intergenic 60.0%
GAGAGGCTGAGCGACGAGAA+CGG - chr1_4:22990059-22990078 None:intergenic 60.0%
CGCCGGAGGTTGAAAAGCGA+CGG - chr1_4:22990242-22990261 None:intergenic 60.0%
!!! CGTCGCTTTTCAACCTCCGG+CGG + chr1_4:22990240-22990259 Msa0156510:CDS 60.0%
GAGCCTGGGTGGTCATTGCT+TGG + chr1_4:22990745-22990764 Msa0156510:CDS 60.0%
CTCTGTTGTCACACTGCCGC+TGG + chr1_4:22993326-22993345 Msa0156510:CDS 60.0%
CACTGCCGCTGGTGTCTAAC+TGG + chr1_4:22993337-22993356 Msa0156510:CDS 60.0%
GAGGCTGAGCGACGAGAACG+GGG - chr1_4:22990057-22990076 None:intergenic 65.0%
!! GTTGGTTCGGGCACGGACGA+CGG - chr1_4:22990083-22990102 None:intergenic 65.0%
GTCCGTGCCCGAACCAACAC+CGG + chr1_4:22990085-22990104 Msa0156510:CDS 65.0%
!! CACCGGTGTTGGTTCGGGCA+CGG - chr1_4:22990090-22990109 None:intergenic 65.0%
GCCCGAACCAACACCGGTGT+CGG + chr1_4:22990091-22990110 Msa0156510:CDS 65.0%
!! GCCGACACCGGTGTTGGTTC+GGG - chr1_4:22990095-22990114 None:intergenic 65.0%
!! CGCCGACACCGGTGTTGGTT+CGG - chr1_4:22990096-22990115 None:intergenic 65.0%
GAGAACGCGAACGCCGACAC+CGG - chr1_4:22990107-22990126 None:intergenic 65.0%
! CGCTTTTCAACCTCCGGCGG+CGG + chr1_4:22990243-22990262 Msa0156510:CDS 65.0%
GCGAACGCCGACACCGGTGT+TGG - chr1_4:22990101-22990120 None:intergenic 70.0%
TCAACCTCCGGCGGCGGAGA+AGG + chr1_4:22990249-22990268 Msa0156510:CDS 70.0%
CGGGCACGGACGACGGTGAG+AGG - chr1_4:22990076-22990095 None:intergenic 75.0%
ACCTCCGGCGGCGGAGAAGG+TGG + chr1_4:22990252-22990271 Msa0156510:CDS 75.0%
TCCGGCGGCGGAGAAGGTGG+CGG + chr1_4:22990255-22990274 Msa0156510:CDS 75.0%
TCCGCCACCTTCTCCGCCGC+CGG - chr1_4:22990259-22990278 None:intergenic 75.0%
! GCCACCTTCTCCGCCGCCGG+AGG - chr1_4:22990256-22990275 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 22989951 22993447 22989951 ID=Msa0156510;Name=Msa0156510
chr1_4 mRNA 22989951 22993447 22989951 ID=Msa0156510-mRNA-1;Parent=Msa0156510;Name=Msa0156510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=68|1|0.9|1|1|1|10|0|724
chr1_4 exon 22989951 22990912 22989951 ID=Msa0156510-mRNA-1:exon:8093;Parent=Msa0156510-mRNA-1
chr1_4 exon 22991077 22991210 22991077 ID=Msa0156510-mRNA-1:exon:8094;Parent=Msa0156510-mRNA-1
chr1_4 exon 22991517 22991652 22991517 ID=Msa0156510-mRNA-1:exon:8095;Parent=Msa0156510-mRNA-1
chr1_4 exon 22991738 22991785 22991738 ID=Msa0156510-mRNA-1:exon:8096;Parent=Msa0156510-mRNA-1
chr1_4 exon 22991958 22992107 22991958 ID=Msa0156510-mRNA-1:exon:8097;Parent=Msa0156510-mRNA-1
chr1_4 exon 22992194 22992345 22992194 ID=Msa0156510-mRNA-1:exon:8098;Parent=Msa0156510-mRNA-1
chr1_4 exon 22992436 22992514 22992436 ID=Msa0156510-mRNA-1:exon:8099;Parent=Msa0156510-mRNA-1
chr1_4 exon 22992619 22992828 22992619 ID=Msa0156510-mRNA-1:exon:8100;Parent=Msa0156510-mRNA-1
chr1_4 exon 22992990 22993133 22992990 ID=Msa0156510-mRNA-1:exon:8101;Parent=Msa0156510-mRNA-1
chr1_4 exon 22993220 22993447 22993220 ID=Msa0156510-mRNA-1:exon:8102;Parent=Msa0156510-mRNA-1
chr1_4 five_prime_UTR 22989951 22990018 22989951 ID=Msa0156510-mRNA-1:five_prime_utr;Parent=Msa0156510-mRNA-1
chr1_4 CDS 22990019 22990912 22990019 ID=Msa0156510-mRNA-1:cds;Parent=Msa0156510-mRNA-1
chr1_4 CDS 22991077 22991210 22991077 ID=Msa0156510-mRNA-1:cds;Parent=Msa0156510-mRNA-1
chr1_4 CDS 22991517 22991652 22991517 ID=Msa0156510-mRNA-1:cds;Parent=Msa0156510-mRNA-1
chr1_4 CDS 22991738 22991785 22991738 ID=Msa0156510-mRNA-1:cds;Parent=Msa0156510-mRNA-1
chr1_4 CDS 22991958 22992107 22991958 ID=Msa0156510-mRNA-1:cds;Parent=Msa0156510-mRNA-1
chr1_4 CDS 22992194 22992345 22992194 ID=Msa0156510-mRNA-1:cds;Parent=Msa0156510-mRNA-1
chr1_4 CDS 22992436 22992514 22992436 ID=Msa0156510-mRNA-1:cds;Parent=Msa0156510-mRNA-1
chr1_4 CDS 22992619 22992828 22992619 ID=Msa0156510-mRNA-1:cds;Parent=Msa0156510-mRNA-1
chr1_4 CDS 22992990 22993133 22992990 ID=Msa0156510-mRNA-1:cds;Parent=Msa0156510-mRNA-1
chr1_4 CDS 22993220 22993447 22993220 ID=Msa0156510-mRNA-1:cds;Parent=Msa0156510-mRNA-1
Gene Sequence

>Msa0156510

ATGGAAAACGACGATGTCGTTTTTAGAAACGGCAACCCCGTTCTCGTCGCTCAGCCTCTCACCGTCGTCCGTGCCCGAACCAACACCGGTGTCGGCGTTCGCGTTCTCGCAACGCCACCGAATCAAAACCCTAACTCCGACGAGTCTGATGCATGCAAAGCTGCAATCATCAAAGTCAAAGACGAACCTCAAGAATTTGAAAATGAAGCAAAATCTGTCACCGTCGCTTTTCAACCTCCGGCGGCGGAGAAGGTGGCGGAGTGTAAGACGGAATCTGATGAACCACGTTCGATGCTTGCGTTTGATGATTTTTTGAAAGCTACGAACACAAAAGTTGCGTCTGTTGATGAATCGTTGAAATCAATGGAAGCTGAATCAACGATTCAAACGAAGGTAGAAAGTTCTGATGTTGATGTAGTTTTCGAAACGCGAGAATCGGTGAAATCAAAGGAAGAAGTTGCTAATCTGAACGTGGTTTGTGATACACAGGAACCGGTTAAGGTTGAACCGGTTAAGGTTGAACCGGTTAAGGCTGAACCGGTTAAGGTTGAACCGGTTTGTGCAGAGAAGAAAACCGTTTGCGATGATGAAGTAGAAGTGTTGAAGGTAGTGAAGGGGAAAGAAGCTGTGAGTGATGAAGTTAGGGTTTTGAAGACGGTGAAGAAGGAGGTAGTTGAAGAGAAGAAGATTCAGATTCCGAATCTTGAGGATGGTGAGTTTCCTGTTGAGCCTGGGTGGTCATTGCTTGGAAGGAAGATTGAGATTGCTACTTCTACTGCTAAAGGAGTGAGGAGATTGGTTGATAATGAGATTATTCATTTTGATTTTCCGAATCCGCATACATCGTATAAGTTTCAATGGATCGTTCGTGTCTCGACCAAACGTTCTGGAGTGGTTGGGAGGCTGCCAATGGAATGGGCTAAATCTGTGATTCCTCTTGTGCAATCTGGAAATGTTAAGGTTCGAGGCCGATGCATTGCTACGCCGTATAAGCTTGAAATGATGCAGGAAATAATGTTGTTAGTAAGTTTTTATGTTCATCACTCTGTATTCTCCGAGTCTGTTGATACCTCTTGGAGACTAGAGGCTTGTGGTAACGTTAACTCTGCTGCATATCCACTGCTTACACTGTTAAATATGCTAGAGATTGAGCCATATAGGAAGGCTGATTTCACCCCTGAGGAAATGAAGGCTCGAAAGCGGGTGCTTAAACTTGACTCAGATGAAGTTTCAGTAATTCCTGTCAATAAGCGAAGAAAAGGTGTCAGTGAGCCACTTCCAGCAACAACTGAGGATGAACAAGCACTTTCGGAGTCAGCTTTGAACAAACTTGTTGGAGCTGCAGAAGTCTTTGACCTGGAGGAGAAGGAAGCCCCAAAGACACTGATGTGTAGTCTAAAGCCTTACCAGAGTCAAGCTCTGTATTGGATGACAAAAATCGAGAAGGGAGGTGATGATGAAAATGCTGAGAGAAATCTACATCCTTGCTGGTCAGCCTACAATATATGCAATGGGAGGTCAATATACGTCAACATATTTACTGGAGAGGCAGCAAAGAAATTTCCACAAGCAACACAGATGGCAAGAGGAGGAATTCTGGCAGATGCAATGGGACTTGGAAAGACTGTTATGACAATCGCACTGATTCTTAGTAATCCAGGCAGGTCGAAGTCAGAAGACAGTGATGGAGAGAGCGTATATGACAATATTTTTTCAGCTAAGAGGAGGAATGTTAACCCTTCGTCTAATTTAGAAGGTGGCACTTTAATTGTTTGTCCTATGGCATTGTTGGGTCAGTGGAAGGATGAACTTGAAACGCATTCAAAACCAGGCAGCATATCCATATTTGTTCATTATGGTGGGGGAAGAACCAGTAATCCTGATTTGTTGTTAGAGTATGATGTTGTCTTGACAACTTATGGTGTCCTATCAGCTTCTTATAAAAGTGAAAGAGAGAATAGCATCTACCACAGGGTCCAATGGTACAGAGTGGTGCTAGACGAAGCTCATCATATAAAATCCCATAAAAGCCAGGTTGCTGAGGCTACTATTGCTCTGTTGTCACACTGCCGCTGGTGTCTAACTGGAACACCACTTCAGGTTAATTATCAGGAACAATTGTGTGTAAATTATAAAATTGCTATGAGAAAAGTACTCGCCCCCCCACAATTATAA
Protein sequence

>Msa0156510

MENDDVVFRNGNPVLVAQPLTVVRARTNTGVGVRVLATPPNQNPNSDESDACKAAIIKVKDEPQEFENEAKSVTVAFQPPAAEKVAECKTESDEPRSMLAFDDFLKATNTKVASVDESLKSMEAESTIQTKVESSDVDVVFETRESVKSKEEVANLNVVCDTQEPVKVEPVKVEPVKAEPVKVEPVCAEKKTVCDDEVEVLKVVKGKEAVSDEVRVLKTVKKEVVEEKKIQIPNLEDGEFPVEPGWSLLGRKIEIATSTAKGVRRLVDNEIIHFDFPNPHTSYKFQWIVRVSTKRSGVVGRLPMEWAKSVIPLVQSGNVKVRGRCIATPYKLEMMQEIMLLVSFYVHHSVFSESVDTSWRLEACGNVNSAAYPLLTLLNMLEIEPYRKADFTPEEMKARKRVLKLDSDEVSVIPVNKRRKGVSEPLPATTEDEQALSESALNKLVGAAEVFDLEEKEAPKTLMCSLKPYQSQALYWMTKIEKGGDDENAERNLHPCWSAYNICNGRSIYVNIFTGEAAKKFPQATQMARGGILADAMGLGKTVMTIALILSNPGRSKSEDSDGESVYDNIFSAKRRNVNPSSNLEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTSNPDLLLEYDVVLTTYGVLSASYKSERENSIYHRVQWYRVVLDEAHHIKSHKSQVAEATIALLSHCRWCLTGTPLQVNYQEQLCVNYKIAMRKVLAPPQL*