AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0448880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0448880 MtrunA17_Chr3g0092361 93.182 44 3 0 1 44 1 44 2.55e-23 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGTTTGTGTTCTGTTTC+TGG 0.051760 3_3:+30805168 Msa0448880:CDS
CTTTGCTATTATTCATTAAT+TGG 0.197093 3_3:+30807554 Msa0448880:three_prime_UTR
ATTTATTTACAGGGGAATTA+TGG 0.224887 3_3:+30805510 Msa0448880:intron
TTTCAATTTCAAGGGCATTT+TGG 0.264806 3_3:-30807201 None:intergenic
AATGAGTGCTCTTAAGATAT+TGG 0.266272 3_3:+30807622 Msa0448880:three_prime_UTR
GGTCTTCCAATTGTTGTAAC+AGG 0.291635 3_3:-30807166 None:intergenic
TATATAGTATCTTCTACTAA+TGG 0.317473 3_3:+30807405 Msa0448880:three_prime_UTR
TCTTAATGGTTTGCTGTGTT+TGG 0.321205 3_3:-30805075 None:intergenic
CATGACTTGTTTCAATTTCA+AGG 0.329598 3_3:-30807210 None:intergenic
GGGCTGATTGATTAATAAAC+TGG 0.334081 3_3:+30807531 Msa0448880:three_prime_UTR
ATGGTTTGCTGTGTTTGGTC+TGG 0.367551 3_3:-30805070 None:intergenic
TGTGTTCCTCCTGGCTATTA+TGG 0.372312 3_3:+30807126 Msa0448880:CDS
ATCATCAGACCAACTCAAAT+AGG 0.403112 3_3:+30807380 Msa0448880:three_prime_UTR
TGTGTCCCTGTTACAACAAT+TGG 0.425313 3_3:+30807160 Msa0448880:CDS
GCAAAAGATGCTGCTCAGTA+TGG 0.425821 3_3:+30805364 Msa0448880:CDS
CTTTGCTATTTGTCTTTCTC+CGG 0.427532 3_3:+30807577 Msa0448880:three_prime_UTR
CATCTTCTTGTGCATTGAGA+TGG 0.446525 3_3:-30807039 None:intergenic
ATCTTCTTGTGCATTGAGAT+GGG 0.464024 3_3:-30807038 None:intergenic
AATAGTATTAATCAAAGAAG+TGG 0.476821 3_3:+30807254 Msa0448880:three_prime_UTR
AAATGTCTCTGTGTTCCTCC+TGG 0.478257 3_3:+30807117 Msa0448880:CDS
AGGAGGAACACAGAGACATT+TGG 0.480481 3_3:-30807115 None:intergenic
TCTACTAATGGATCATCATC+GGG 0.488483 3_3:+30807417 Msa0448880:three_prime_UTR
ATTAGATTGTGTTCCTCTCA+AGG 0.500817 3_3:-30807344 None:intergenic
ATGAGGTGGAGAAGAAGTGA+GGG 0.508441 3_3:-30805116 None:intergenic
TTCTACTAATGGATCATCAT+CGG 0.509516 3_3:+30807416 Msa0448880:three_prime_UTR
ATGACTTGTTTCAATTTCAA+GGG 0.510609 3_3:-30807209 None:intergenic
TTTGTTCAAGATATTGAATG+AGG 0.515430 3_3:-30805133 None:intergenic
ACTAACCTGAGTGGTGATCA+TGG 0.521483 3_3:-30805206 None:intergenic
CTATATAAACCTATTTGAGT+TGG 0.532884 3_3:-30807389 None:intergenic
AATGAGGTGGAGAAGAAGTG+AGG 0.536766 3_3:-30805117 None:intergenic
CAGCCCTCTTGTTTAAGAGA+GGG 0.538674 3_3:-30807514 None:intergenic
GTTCAAGATATTGAATGAGG+TGG 0.542180 3_3:-30805130 None:intergenic
GCTCTTAAGATATTGGATCA+AGG 0.558841 3_3:+30807629 Msa0448880:three_prime_UTR
AGCCCTCTTGTTTAAGAGAG+GGG 0.567486 3_3:-30807513 None:intergenic
GATTTGTTACCATAATAGCC+AGG 0.572427 3_3:-30807135 None:intergenic
CGGTAGCTTTGAAGACTCCC+AGG 0.578508 3_3:-30805534 None:intergenic
GTCTTCCAATTGTTGTAACA+GGG 0.578624 3_3:-30807165 None:intergenic
TACAGGGGAATTATGGACCT+GGG 0.587624 3_3:+30805517 Msa0448880:intron
TCAGCCCTCTTGTTTAAGAG+AGG 0.607045 3_3:-30807515 None:intergenic
TCTCAATGCACAAGAAGATG+TGG 0.608334 3_3:+30807042 Msa0448880:CDS
TTACAGGGGAATTATGGACC+TGG 0.609160 3_3:+30805516 Msa0448880:intron
AATATCTTGAACAAAAGCCA+TGG 0.609877 3_3:+30805141 Msa0448880:exon
CATTGCCATGATCACCACTC+AGG 0.609926 3_3:+30805201 Msa0448880:CDS
AACAATTGGAAGACCAAGCG+TGG 0.618322 3_3:+30807174 Msa0448880:CDS
GAATCAAACGAAACCTTGAG+AGG 0.619990 3_3:+30807331 Msa0448880:three_prime_UTR
TAACCCCTCTCTTAAACAAG+AGG 0.624865 3_3:+30807510 Msa0448880:three_prime_UTR
AACACAAACAAGCTTAGCCA+TGG 0.629211 3_3:-30805158 None:intergenic
TGAGGTGGAGAAGAAGTGAG+GGG 0.642973 3_3:-30805115 None:intergenic
TGGTGATCATGGCAATGCTA+AGG 0.649208 3_3:-30805195 None:intergenic
AACCCCTCTCTTAAACAAGA+GGG 0.653095 3_3:+30807511 Msa0448880:three_prime_UTR
ATGGATATATGATTGACTCA+CGG 0.685005 3_3:-30805554 None:intergenic
AATTGGAAGACCAAGCGTGG+AGG 0.716723 3_3:+30807177 Msa0448880:CDS
TTGTTACCATAATAGCCAGG+AGG 0.723243 3_3:-30807132 None:intergenic
TAGGAGGAGACTAACCTGAG+TGG 0.729040 3_3:-30805215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTTTAATTTTTTTT+GGG - chr3_3:30806453-30806472 None:intergenic 0.0%
!!! TAAAAAATTTTAATTTTTTT+TGG - chr3_3:30806454-30806473 None:intergenic 0.0%
!!! ATTATTCTTTTATTAAGATT+AGG - chr3_3:30805308-30805327 None:intergenic 10.0%
!!! TTAATTTTGTACATAAAATA+TGG + chr3_3:30805598-30805617 Msa0448880:intron 10.0%
!! AAAATTATAATTAAATACAG+AGG + chr3_3:30805901-30805920 Msa0448880:intron 10.0%
!! TAAAAACTTAGTAAAAAAAA+GGG + chr3_3:30806246-30806265 Msa0448880:intron 10.0%
!! ACAAAAATTAACTTAAAAAT+AGG - chr3_3:30806381-30806400 None:intergenic 10.0%
!! TTTAAATAAAGAATATTTCA+TGG + chr3_3:30806927-30806946 Msa0448880:intron 10.0%
!! TTAAATAAAGAATATTTCAT+GGG + chr3_3:30806928-30806947 Msa0448880:intron 10.0%
!!! AATTTTTTCGATTTATTTAC+AGG + chr3_3:30805500-30805519 Msa0448880:intron 15.0%
!!! ATTTTTTCGATTTATTTACA+GGG + chr3_3:30805501-30805520 Msa0448880:intron 15.0%
!!! TTTTATGTACAAAATTAAGT+TGG - chr3_3:30805596-30805615 None:intergenic 15.0%
!! AAAAAAAGTCTATGTTAAAA+TGG - chr3_3:30806008-30806027 None:intergenic 15.0%
!!! AGTATCATTAGTTAATTTTT+AGG - chr3_3:30806134-30806153 None:intergenic 15.0%
!!! TTTTTTACTAAGTTTTTACT+AGG - chr3_3:30806244-30806263 None:intergenic 15.0%
!! GTAAAAACTTAGTAAAAAAA+AGG + chr3_3:30806245-30806264 Msa0448880:intron 15.0%
!! AAAAACTTAGTAAAAAAAAG+GGG + chr3_3:30806247-30806266 Msa0448880:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr3_3:30806350-30806369 None:intergenic 15.0%
!!! ATGAATTTTTATATTTTTGG+TGG - chr3_3:30806507-30806526 None:intergenic 15.0%
!!! AAAAAGTTGGTATATTTATA+GGG + chr3_3:30806723-30806742 Msa0448880:intron 15.0%
!!! ATATATCCATTTTAAATTAC+TGG - chr3_3:30806777-30806796 None:intergenic 15.0%
!! TGCTAAAAATAAATATTATG+TGG - chr3_3:30807288-30807307 None:intergenic 15.0%
!!! GAAATTTTGTATTAAGAAAA+TGG + chr3_3:30807663-30807682 Msa0448880:three_prime_UTR 15.0%
!! TTATTAAGATTAGGAAGATT+AGG - chr3_3:30805299-30805318 None:intergenic 20.0%
!!! TTTTTTCGATTTATTTACAG+GGG + chr3_3:30805502-30805521 Msa0448880:intron 20.0%
!!! CATGCTTTTTTTTTCTTTTA+TGG + chr3_3:30805691-30805710 Msa0448880:intron 20.0%
!! TTCAGAAACATATAATAAGT+GGG - chr3_3:30805803-30805822 None:intergenic 20.0%
!! TTTCAGAAACATATAATAAG+TGG - chr3_3:30805804-30805823 None:intergenic 20.0%
!!! GAATTTCACTTCTTTTTATA+TGG + chr3_3:30805981-30806000 Msa0448880:intron 20.0%
!!! ATCATTAGTTAATTTTTAGG+CGG - chr3_3:30806131-30806150 None:intergenic 20.0%
!! CACATAAACAAATATATAAG+TGG - chr3_3:30806175-30806194 None:intergenic 20.0%
!! CACTTATATATTTGTTTATG+TGG + chr3_3:30806173-30806192 Msa0448880:intron 20.0%
!!! TATGTGGCAATTTTATTTTT+TGG + chr3_3:30806189-30806208 Msa0448880:intron 20.0%
!!! GAAAAGTTGGTATATTTATT+GGG - chr3_3:30806290-30806309 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr3_3:30806351-30806370 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr3_3:30806354-30806373 Msa0448880:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr3_3:30806631-30806650 Msa0448880:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + chr3_3:30806632-30806651 Msa0448880:intron 20.0%
!!! CAAAAAGTTGGTATATTTAT+AGG + chr3_3:30806722-30806741 Msa0448880:intron 20.0%
!!! TTTTAGGGTTAATATGTTTT+TGG - chr3_3:30806750-30806769 None:intergenic 20.0%
!!! TAAATTACTGGTGATTTTTA+GGG - chr3_3:30806765-30806784 None:intergenic 20.0%
!!! TTAAATTACTGGTGATTTTT+AGG - chr3_3:30806766-30806785 None:intergenic 20.0%
!! AAATCACCAGTAATTTAAAA+TGG + chr3_3:30806768-30806787 Msa0448880:intron 20.0%
!! AATAGTATTAATCAAAGAAG+TGG + chr3_3:30807254-30807273 Msa0448880:three_prime_UTR 20.0%
!! TATATAGTATCTTCTACTAA+TGG + chr3_3:30807405-30807424 Msa0448880:three_prime_UTR 20.0%
!!! CTTTGCTATTATTCATTAAT+TGG + chr3_3:30807554-30807573 Msa0448880:three_prime_UTR 20.0%
!!! ATTTTACAGTAAATTAACAC+CGG - chr3_3:30807599-30807618 None:intergenic 20.0%
!!! CTGATTTTAAGAGTTCTTAA+TGG - chr3_3:30805092-30805111 None:intergenic 25.0%
! TTTGTTCAAGATATTGAATG+AGG - chr3_3:30805136-30805155 None:intergenic 25.0%
!! AAATTTCCTATACATTTTGC+AGG + chr3_3:30805336-30805355 Msa0448880:intron 25.0%
!! TTTTGCAAAATGCCTATTAA+AGG - chr3_3:30805444-30805463 None:intergenic 25.0%
! ATTTATTTACAGGGGAATTA+TGG + chr3_3:30805510-30805529 Msa0448880:intron 25.0%
!!! ATTAAGTTGGTCTACAAAAA+TGG - chr3_3:30805583-30805602 None:intergenic 25.0%
! TCAGAAACATATAATAAGTG+GGG - chr3_3:30805802-30805821 None:intergenic 25.0%
! CATGAGGAAATTTCTTTAAA+TGG - chr3_3:30805872-30805891 None:intergenic 25.0%
! TAAAGAAATTTCCTCATGTA+TGG + chr3_3:30805874-30805893 Msa0448880:intron 25.0%
!! TAATTTTTGTACCATACATG+AGG - chr3_3:30805888-30805907 None:intergenic 25.0%
! AAATGAATGAATGTTAGAGA+CGG - chr3_3:30805943-30805962 None:intergenic 25.0%
!!! CGAAAAGTTGGTATATTTAT+TGG - chr3_3:30806291-30806310 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - chr3_3:30806321-30806340 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr3_3:30806322-30806341 None:intergenic 25.0%
!!! TGAAGATGGTTAGTTTTAAT+GGG + chr3_3:30806663-30806682 Msa0448880:intron 25.0%
!!! ATGACTTGTTTCAATTTCAA+GGG - chr3_3:30807212-30807231 None:intergenic 25.0%
! CTATATAAACCTATTTGAGT+TGG - chr3_3:30807392-30807411 None:intergenic 25.0%
AATATCTTGAACAAAAGCCA+TGG + chr3_3:30805141-30805160 Msa0448880:exon 30.0%
!! GTTTTGTGTTGAGTTGTTTT+AGG - chr3_3:30805237-30805256 None:intergenic 30.0%
TGATACACATTCATGTAACA+TGG - chr3_3:30805259-30805278 None:intergenic 30.0%
AATTCTCAAAACAGAGAGAA+AGG - chr3_3:30805402-30805421 None:intergenic 30.0%
TCTTTCCTAGTTCCTTTAAT+AGG + chr3_3:30805429-30805448 Msa0448880:intron 30.0%
AAATGCCTATTAAAGGAACT+AGG - chr3_3:30805437-30805456 None:intergenic 30.0%
! ATGGATATATGATTGACTCA+CGG - chr3_3:30805557-30805576 None:intergenic 30.0%
AAATATTAAGCAATGCTCTG+AGG + chr3_3:30806056-30806075 Msa0448880:intron 30.0%
AATATTAAGCAATGCTCTGA+GGG + chr3_3:30806057-30806076 Msa0448880:intron 30.0%
!!! GTGGCAATTTTATTTTTTGG+TGG + chr3_3:30806192-30806211 Msa0448880:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG - chr3_3:30806335-30806354 None:intergenic 30.0%
! AAACTAACCATCTTCACTTT+TGG - chr3_3:30806659-30806678 None:intergenic 30.0%
!!! GTGAAGATGGTTAGTTTTAA+TGG + chr3_3:30806662-30806681 Msa0448880:intron 30.0%
!! GTTTTAATGGGACTAAAAGT+TGG + chr3_3:30806675-30806694 Msa0448880:intron 30.0%
GAGAGACTAAAACAAAAAGT+TGG + chr3_3:30806710-30806729 Msa0448880:intron 30.0%
GAGCATTCAAACAGAAATAT+AGG - chr3_3:30806808-30806827 None:intergenic 30.0%
!!! TTTCAATTTCAAGGGCATTT+TGG - chr3_3:30807204-30807223 None:intergenic 30.0%
!! CATGACTTGTTTCAATTTCA+AGG - chr3_3:30807213-30807232 None:intergenic 30.0%
! TTCTACTAATGGATCATCAT+CGG + chr3_3:30807416-30807435 Msa0448880:three_prime_UTR 30.0%
AATGAGTGCTCTTAAGATAT+TGG + chr3_3:30807622-30807641 Msa0448880:three_prime_UTR 30.0%
!! TCTTAATGGTTTGCTGTGTT+TGG - chr3_3:30805078-30805097 None:intergenic 35.0%
GTTCAAGATATTGAATGAGG+TGG - chr3_3:30805133-30805152 None:intergenic 35.0%
!!! TTGTGTTGAGTTGTTTTAGG+AGG - chr3_3:30805234-30805253 None:intergenic 35.0%
TAAAGGAACTAGGAAAGAAG+TGG - chr3_3:30805427-30805446 None:intergenic 35.0%
TGGTCTACAAAAATGGAGTA+TGG - chr3_3:30805576-30805595 None:intergenic 35.0%
CTAGGTACTTTGACGAATAT+GGG - chr3_3:30806226-30806245 None:intergenic 35.0%
ACTAGGTACTTTGACGAATA+TGG - chr3_3:30806227-30806246 None:intergenic 35.0%
TTAATGGGACTAAAAGTTGG+AGG + chr3_3:30806678-30806697 Msa0448880:intron 35.0%
TCTGAGAGAAATTGAATGAG+TGG + chr3_3:30806855-30806874 Msa0448880:intron 35.0%
TGAATGAGTGGAATCAAACA+TGG + chr3_3:30806867-30806886 Msa0448880:intron 35.0%
GTTAACACAATGCAGTCTAA+TGG + chr3_3:30806982-30807001 Msa0448880:intron 35.0%
ATCTTCTTGTGCATTGAGAT+GGG - chr3_3:30807041-30807060 None:intergenic 35.0%
! TTTTGACAGAAGAACATGCA+TGG - chr3_3:30807087-30807106 None:intergenic 35.0%
!! GATTTGTTACCATAATAGCC+AGG - chr3_3:30807138-30807157 None:intergenic 35.0%
GTCTTCCAATTGTTGTAACA+GGG - chr3_3:30807168-30807187 None:intergenic 35.0%
ATTAGATTGTGTTCCTCTCA+AGG - chr3_3:30807347-30807366 None:intergenic 35.0%
ATCATCAGACCAACTCAAAT+AGG + chr3_3:30807380-30807399 Msa0448880:three_prime_UTR 35.0%
! TCTACTAATGGATCATCATC+GGG + chr3_3:30807417-30807436 Msa0448880:three_prime_UTR 35.0%
GGGCTGATTGATTAATAAAC+TGG + chr3_3:30807531-30807550 Msa0448880:three_prime_UTR 35.0%
!! CTTTGCTATTTGTCTTTCTC+CGG + chr3_3:30807577-30807596 Msa0448880:three_prime_UTR 35.0%
GCTCTTAAGATATTGGATCA+AGG + chr3_3:30807629-30807648 Msa0448880:three_prime_UTR 35.0%
AACACAAACAAGCTTAGCCA+TGG - chr3_3:30805161-30805180 None:intergenic 40.0%
GCTTGTTTGTGTTCTGTTTC+TGG + chr3_3:30805168-30805187 Msa0448880:CDS 40.0%
CCATAGCCTGCAAAATGTAT+AGG - chr3_3:30805345-30805364 None:intergenic 40.0%
! CCTATACATTTTGCAGGCTA+TGG + chr3_3:30805342-30805361 Msa0448880:intron 40.0%
! AGGCGGCTAATTTTCATTGA+TGG - chr3_3:30806114-30806133 None:intergenic 40.0%
CATCTTCTTGTGCATTGAGA+TGG - chr3_3:30807042-30807061 None:intergenic 40.0%
TCTCAATGCACAAGAAGATG+TGG + chr3_3:30807042-30807061 Msa0448880:CDS 40.0%
TTGTTACCATAATAGCCAGG+AGG - chr3_3:30807135-30807154 None:intergenic 40.0%
TGTGTCCCTGTTACAACAAT+TGG + chr3_3:30807160-30807179 Msa0448880:CDS 40.0%
GGTCTTCCAATTGTTGTAAC+AGG - chr3_3:30807169-30807188 None:intergenic 40.0%
GAATCAAACGAAACCTTGAG+AGG + chr3_3:30807331-30807350 Msa0448880:three_prime_UTR 40.0%
TAACCCCTCTCTTAAACAAG+AGG + chr3_3:30807510-30807529 Msa0448880:three_prime_UTR 40.0%
AACCCCTCTCTTAAACAAGA+GGG + chr3_3:30807511-30807530 Msa0448880:three_prime_UTR 40.0%
ATGAGGTGGAGAAGAAGTGA+GGG - chr3_3:30805119-30805138 None:intergenic 45.0%
AATGAGGTGGAGAAGAAGTG+AGG - chr3_3:30805120-30805139 None:intergenic 45.0%
TGGTGATCATGGCAATGCTA+AGG - chr3_3:30805198-30805217 None:intergenic 45.0%
ACTAACCTGAGTGGTGATCA+TGG - chr3_3:30805209-30805228 None:intergenic 45.0%
GCAAAAGATGCTGCTCAGTA+TGG + chr3_3:30805364-30805383 Msa0448880:CDS 45.0%
TTACAGGGGAATTATGGACC+TGG + chr3_3:30805516-30805535 Msa0448880:intron 45.0%
TACAGGGGAATTATGGACCT+GGG + chr3_3:30805517-30805536 Msa0448880:intron 45.0%
GAGGGACGAAAACGAAAAGT+TGG - chr3_3:30806303-30806322 None:intergenic 45.0%
AGAGGGACCAAAAGTGAAGA+TGG + chr3_3:30806649-30806668 Msa0448880:intron 45.0%
AGGAGGAACACAGAGACATT+TGG - chr3_3:30807118-30807137 None:intergenic 45.0%
AAATGTCTCTGTGTTCCTCC+TGG + chr3_3:30807117-30807136 Msa0448880:CDS 45.0%
TGTGTTCCTCCTGGCTATTA+TGG + chr3_3:30807126-30807145 Msa0448880:CDS 45.0%
AACAATTGGAAGACCAAGCG+TGG + chr3_3:30807174-30807193 Msa0448880:CDS 45.0%
! AGCCCTCTTGTTTAAGAGAG+GGG - chr3_3:30807516-30807535 None:intergenic 45.0%
! CAGCCCTCTTGTTTAAGAGA+GGG - chr3_3:30807517-30807536 None:intergenic 45.0%
! TCAGCCCTCTTGTTTAAGAG+AGG - chr3_3:30807518-30807537 None:intergenic 45.0%
!!! AATATGAATTTTTATATTTT+TGG - chr3_3:30806510-30806529 None:intergenic 5.0%
!!! AAAAAATTCTAATTTTTTTT+TGG + chr3_3:30806546-30806565 Msa0448880:intron 5.0%
!!! AAAAATTCTAATTTTTTTTT+GGG + chr3_3:30806547-30806566 Msa0448880:intron 5.0%
TGAGGTGGAGAAGAAGTGAG+GGG - chr3_3:30805118-30805137 None:intergenic 50.0%
CATTGCCATGATCACCACTC+AGG + chr3_3:30805201-30805220 Msa0448880:CDS 50.0%
TAGGAGGAGACTAACCTGAG+TGG - chr3_3:30805218-30805237 None:intergenic 50.0%
AATTGGAAGACCAAGCGTGG+AGG + chr3_3:30807177-30807196 Msa0448880:CDS 50.0%
!! CGGTAGCTTTGAAGACTCCC+AGG - chr3_3:30805537-30805556 None:intergenic 55.0%
!! GCATTTTGGTCCTCCACGCT+TGG - chr3_3:30807190-30807209 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 30805071 30807703 30805071 ID=Msa0448880;Name=Msa0448880
chr3_3 mRNA 30805071 30807703 30805071 ID=Msa0448880-mRNA-1;Parent=Msa0448880;Name=Msa0448880-mRNA-1;_AED=0.22;_eAED=0.22;_QI=89|0.66|0.75|1|1|1|4|463|128
chr3_3 exon 30805071 30805222 30805071 ID=Msa0448880-mRNA-1:exon:5689;Parent=Msa0448880-mRNA-1
chr3_3 exon 30805358 30805390 30805358 ID=Msa0448880-mRNA-1:exon:5690;Parent=Msa0448880-mRNA-1
chr3_3 exon 30805522 30805605 30805522 ID=Msa0448880-mRNA-1:exon:5691;Parent=Msa0448880-mRNA-1
chr3_3 exon 30807034 30807703 30807034 ID=Msa0448880-mRNA-1:exon:5692;Parent=Msa0448880-mRNA-1
chr3_3 five_prime_UTR 30805071 30805159 30805071 ID=Msa0448880-mRNA-1:five_prime_utr;Parent=Msa0448880-mRNA-1
chr3_3 CDS 30805160 30805222 30805160 ID=Msa0448880-mRNA-1:cds;Parent=Msa0448880-mRNA-1
chr3_3 CDS 30805358 30805390 30805358 ID=Msa0448880-mRNA-1:cds;Parent=Msa0448880-mRNA-1
chr3_3 CDS 30805522 30805605 30805522 ID=Msa0448880-mRNA-1:cds;Parent=Msa0448880-mRNA-1
chr3_3 CDS 30807034 30807240 30807034 ID=Msa0448880-mRNA-1:cds;Parent=Msa0448880-mRNA-1
chr3_3 three_prime_UTR 30807241 30807703 30807241 ID=Msa0448880-mRNA-1:three_prime_utr;Parent=Msa0448880-mRNA-1
Gene Sequence

>Msa0448880

ATGGCTAAGCTTGTTTGTGTTCTGTTTCTGGCACTCCTTAGCATTGCCATGATCACCACTCAGGCTATGGCAAAAGATGCTGCTCAGTATGGCAGTGGGAATTATGGACCTGGGAGTCTTCAAAGCTACCGTGAGTCAATCATATATCCATACTCCATTTTTGTAGACCAACTTAATTTTAGTGCCCATCTCAATGCACAAGAAGATGTGGACAGACACAATATCACAAGCCATGCATGTTCTTCTGTCAAAAATGTTGTGCCAAATGTCTCTGTGTTCCTCCTGGCTATTATGGTAACAAATCTGTGTGTCCCTGTTACAACAATTGGAAGACCAAGCGTGGAGGACCAAAATGCCCTTGAAATTGAAACAAGTCATGATCATTAA

Protein sequence

>Msa0448880

MAKLVCVLFLALLSIAMITTQAMAKDAAQYGSGNYGPGSLQSYRESIIYPYSIFVDQLNFSAHLNAQEDVDRHNITSHACSSVKNVVPNVSVFLLAIMVTNLCVPVTTIGRPSVEDQNALEIETSHDH*