AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0425150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425150 MtrunA17_Chr3g0127151 97.107 242 5 1 1 242 1 240 6.54e-173 475
Msa0425150 MtrunA17_Chr5g0398981 31.250 128 81 2 119 241 97 222 4.89e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0425150 AT5G53490.4 63.673 245 77 4 1 242 24 259 1.08e-101 296
Msa0425150 AT5G53490.1 63.673 245 77 4 1 242 1 236 1.10e-101 295
Msa0425150 AT5G53490.3 61.753 251 86 3 1 242 1 250 1.39e-101 295
Msa0425150 AT5G53490.2 63.673 245 76 4 1 242 1 235 1.61e-101 295
Msa0425150 AT1G12250.2 30.723 166 106 4 81 241 5 166 2.37e-14 70.1
Msa0425150 AT1G12250.1 31.210 157 100 3 90 241 87 240 5.06e-14 70.1
Msa0425150 AT1G12250.3 33.333 105 65 1 142 241 1 105 3.19e-12 62.8

Find 70 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACATTTCAATTTACTTT+TGG 0.220928 3_2:+75481754 None:intergenic
CATTTGTGAAGTCACATTTC+CGG 0.250911 3_2:+75482911 None:intergenic
CAGACAGAGTCTTCCCCTTC+AGG 0.276167 3_2:+75482878 None:intergenic
TTGTATTTCTGCATATCTTT+TGG 0.289675 3_2:+75481939 None:intergenic
TGTTGGATCGTGTTAATTTC+GGG 0.294360 3_2:-75482078 Msa0425150:CDS
GTGTTGGATCGTGTTAATTT+CGG 0.299450 3_2:-75482079 Msa0425150:CDS
CACCTTTGACGATGCTAAAC+TGG 0.319451 3_2:-75482005 Msa0425150:CDS
TTTCGGGAAAGCAGATCTTC+AGG 0.327829 3_2:-75482062 Msa0425150:CDS
ATCTTCAGGGAGCTGTATTT+AGG 0.328541 3_2:-75482048 Msa0425150:CDS
CAAATTGAAGACAATAATAA+TGG 0.348363 3_2:-75481682 Msa0425150:three_prime_UTR
GAAGGCGAAGCTGAGTTAGA+TGG 0.362215 3_2:-75484864 Msa0425150:CDS
CGCTGCGAACGTGCATTTGT+TGG 0.372475 3_2:-75482982 Msa0425150:CDS
GCATTTGTTGGCAACACAAT+TGG 0.392635 3_2:-75482970 Msa0425150:CDS
CCCTTCACAATCACTTGCTC+TGG 0.411094 3_2:-75484991 Msa0425150:intron
TCCCGTTACTGCTGCTACTC+AGG 0.417361 3_2:-75484748 Msa0425150:intron
TGTCAAAGGCTTATGCAGTT+GGG 0.417381 3_2:-75482801 Msa0425150:CDS
AAATGCACGTTCGCAGCGAT+TGG 0.439609 3_2:+75482987 None:intergenic
TGTTGGCAACACAATTGGTC+AGG 0.445456 3_2:-75482965 Msa0425150:CDS
ACCTGAGTAGCAGCAGTAAC+GGG 0.463670 3_2:+75484747 None:intergenic
AACACAATTGGTCAGGCAAA+TGG 0.475300 3_2:-75482958 Msa0425150:CDS
AGCTCGACCCTCGTCGCCGA+TGG 0.476213 3_2:+75481916 None:intergenic
CGGGACTTGAATTGAAAGGT+TGG 0.478683 3_2:+75485077 None:intergenic
GATTGGGCTCAGTTGACAAT+GGG 0.478708 3_2:+75483004 None:intergenic
ACTTAGTCTCAACAAAATCA+AGG 0.488052 3_2:-75484820 Msa0425150:CDS
TTCGGGAAAGCAGATCTTCA+GGG 0.490270 3_2:-75482061 Msa0425150:CDS
TTTGGTTGAGTAGTTGCGTA+TGG 0.490995 3_2:+75485041 None:intergenic
ATGTCAGATGCTAAGTTTGA+CGG 0.494312 3_2:-75482847 Msa0425150:CDS
AATGCACGTTCGCAGCGATT+GGG 0.510575 3_2:+75482988 None:intergenic
CAGAGTCTTCCCCTTCAGGT+TGG 0.517528 3_2:+75482882 None:intergenic
ATGTCAAAGGCTTATGCAGT+TGG 0.517874 3_2:-75482802 Msa0425150:CDS
AGTGGTGAAACATGGTCGTT+TGG 0.528721 3_2:+75485023 None:intergenic
TTCGCGGGACTTGAATTGAA+AGG 0.530892 3_2:+75485073 None:intergenic
GTCAAAGGCTTATGCAGTTG+GGG 0.538436 3_2:-75482800 Msa0425150:CDS
AACCTGAGTAGCAGCAGTAA+CGG 0.539008 3_2:+75484746 None:intergenic
TTGAAGTGCAGAAAGAAGAA+TGG 0.545702 3_2:-75485100 Msa0425150:exon
GCAGATAAGAAGCAAGGGTG+TGG 0.551632 3_2:-75485155 Msa0425150:five_prime_UTR
ACGACAAAGCATTAGATCTC+CGG 0.559241 3_2:-75482930 Msa0425150:CDS
CAGTTTAGCATCGTCAAAGG+TGG 0.560849 3_2:+75482006 None:intergenic
TCTCTTGTAGTTGTAGGAGA+AGG 0.562555 3_2:-75484882 Msa0425150:intron
GACAGAAGTTGTAATGTCAA+AGG 0.563514 3_2:-75482815 Msa0425150:CDS
CGATTGGGCTCAGTTGACAA+TGG 0.568426 3_2:+75483003 None:intergenic
GGACTTCTCAAATGCAGTGT+TGG 0.574276 3_2:-75482095 Msa0425150:CDS
TTCCAGTTTAGCATCGTCAA+AGG 0.578875 3_2:+75482003 None:intergenic
GTATGGACAAACTCGTTCGC+GGG 0.579978 3_2:+75485058 None:intergenic
TTGTTGAGACTAAGTAACCT+TGG 0.583587 3_2:+75484828 None:intergenic
ATAAGCTGCAAGAATACCAC+AGG 0.587978 3_2:+75484791 None:intergenic
TGTGAAGGGTGAAGCAGAAG+TGG 0.591249 3_2:+75485005 None:intergenic
GACGAGGGTCGAGCTGAGCT+AGG 0.596639 3_2:-75481908 Msa0425150:CDS
CAAGGCACTCTTATATATCA+CGG 0.598277 3_2:+75481812 None:intergenic
CTTAGTCTCAACAAAATCAA+GGG 0.599258 3_2:-75484819 Msa0425150:CDS
ATATGCAGAAATACAACCAT+CGG 0.602365 3_2:-75481932 Msa0425150:CDS
TCTACTAGTTCTCCTCATCA+AGG 0.605342 3_2:+75481794 None:intergenic
CGTATGGACAAACTCGTTCG+CGG 0.614739 3_2:+75485057 None:intergenic
ACACCCTTGCTTCTTATCTG+CGG 0.619325 3_2:+75485157 None:intergenic
CCAGAGCAAGTGATTGTGAA+GGG 0.619678 3_2:+75484991 None:intergenic
GAAGCAGAAGTGGTGAAACA+TGG 0.620884 3_2:+75485015 None:intergenic
TTATCCGCAGATAAGAAGCA+AGG 0.623287 3_2:-75485161 None:intergenic
AATACAACCATCGGCGACGA+GGG 0.628415 3_2:-75481923 Msa0425150:CDS
AAATACAACCATCGGCGACG+AGG 0.630860 3_2:-75481924 Msa0425150:CDS
TATATAAGAGTGCCTTGATG+AGG 0.637175 3_2:-75481806 Msa0425150:three_prime_UTR
TATCCGCAGATAAGAAGCAA+GGG 0.644435 3_2:-75485160 Msa0425150:five_prime_UTR
GAAATAATAAAACACTACAA+AGG 0.645557 3_2:+75481726 None:intergenic
AAAATCAAGGGTGTTGCCTG+TGG 0.646472 3_2:-75484807 Msa0425150:CDS
TTTGACGATGCTAAACTGGA+AGG 0.655477 3_2:-75482001 Msa0425150:CDS
ATTGGGCTCAGTTGACAATG+GGG 0.660543 3_2:+75483005 None:intergenic
TCAAAGGCTTATGCAGTTGG+GGG 0.667718 3_2:-75482799 Msa0425150:CDS
TAAGAAGCAAGGGTGTGGAG+TGG 0.671399 3_2:-75485150 Msa0425150:five_prime_UTR
ACCAGAGCAAGTGATTGTGA+AGG 0.676454 3_2:+75484990 None:intergenic
TTGGGCTCAGTTGACAATGG+GGG 0.687518 3_2:+75483006 None:intergenic
ATGGAACTGAGAATAAACCA+AGG 0.746677 3_2:-75484845 Msa0425150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTTTTTTTTTTGAAA+CGG - chr3_2:75482919-75482938 Msa0425150:CDS 10.0%
!! CAAATTAAAACATGTAATAT+AGG - chr3_2:75482620-75482639 Msa0425150:intron 15.0%
!! CGTTTCAAAAAAAAAAAAAA+AGG + chr3_2:75482921-75482940 None:intergenic 15.0%
!! TGAAAAAACACAAAAAAATT+GGG + chr3_2:75483503-75483522 None:intergenic 15.0%
!! ATGAAAAAACACAAAAAAAT+TGG + chr3_2:75483504-75483523 None:intergenic 15.0%
!!! AAAACATTTCAATTTACTTT+TGG + chr3_2:75485027-75485046 None:intergenic 15.0%
!! ACAAACAAATTTAAATGTCT+TGG + chr3_2:75481876-75481895 None:intergenic 20.0%
!! AATGTATCTATAAATCCAAA+TGG - chr3_2:75482698-75482717 Msa0425150:intron 20.0%
!! AAAAAAAAAAAAAAGGAGCA+GGG + chr3_2:75482914-75482933 None:intergenic 20.0%
!! AAAAAAAAAAAAAAAGGAGC+AGG + chr3_2:75482915-75482934 None:intergenic 20.0%
!!! TTAGATTGGATTATTAGTTT+TGG + chr3_2:75483200-75483219 None:intergenic 20.0%
!! AATGTATAGAAACATGTATT+TGG + chr3_2:75484085-75484104 None:intergenic 20.0%
!!! ATGAAGAATAACTTTTATGT+TGG - chr3_2:75484147-75484166 Msa0425150:intron 20.0%
!! AAACATTTACTAAACTTGAA+TGG - chr3_2:75484170-75484189 Msa0425150:intron 20.0%
!!! GCTTATTTTATCATAGAAAT+TGG - chr3_2:75484477-75484496 Msa0425150:intron 20.0%
!! TGATTCATACTAATACTATT+TGG - chr3_2:75484610-75484629 Msa0425150:intron 20.0%
!! GAAATAATAAAACACTACAA+AGG + chr3_2:75485055-75485074 None:intergenic 20.0%
!! CAAATTGAAGACAATAATAA+TGG - chr3_2:75485096-75485115 Msa0425150:exon 20.0%
! AACAATCGTATAAGACTATT+AGG - chr3_2:75482159-75482178 Msa0425150:intron 25.0%
!! ATGATAGTACTGAACTTATT+AGG - chr3_2:75482396-75482415 Msa0425150:intron 25.0%
!!! TTGGATTATTAGTTTTGGTT+TGG + chr3_2:75483195-75483214 None:intergenic 25.0%
! GGTTAGTAAGTTAATTAGAT+TGG + chr3_2:75483214-75483233 None:intergenic 25.0%
! ACTTCATCATTTCATTCAAA+TGG - chr3_2:75483348-75483367 Msa0425150:intron 25.0%
! ATTTCATTCAAATGGTCATT+CGG - chr3_2:75483356-75483375 Msa0425150:intron 25.0%
! AAAACACAAAAAAATTGGGT+TGG + chr3_2:75483499-75483518 None:intergenic 25.0%
!!! TTGTGTTTTTTCATTGTGAT+TGG - chr3_2:75483510-75483529 Msa0425150:intron 25.0%
!!! TCATTTTTTGATCAAGCTAA+AGG - chr3_2:75483573-75483592 Msa0425150:intron 25.0%
! ATATTCAATACCAACCTAAA+TGG + chr3_2:75483606-75483625 None:intergenic 25.0%
!! TGATTTTGTACTAGTAAACA+AGG + chr3_2:75484020-75484039 None:intergenic 25.0%
! AATCAGAGGTAATTATTATC+AGG + chr3_2:75484222-75484241 None:intergenic 25.0%
! TGAAAGATGAATAAAATCAG+AGG + chr3_2:75484236-75484255 None:intergenic 25.0%
! TCCACTAACTACTATTAATA+AGG - chr3_2:75484437-75484456 Msa0425150:intron 25.0%
! CCACTAACTACTATTAATAA+GGG - chr3_2:75484438-75484457 Msa0425150:intron 25.0%
!!! TTGTATTTCTGCATATCTTT+TGG + chr3_2:75484842-75484861 None:intergenic 25.0%
! TCTTTCTGCACTTCAATTTT+TGG + chr3_2:75481674-75481693 None:intergenic 30.0%
ACTTAGTCTCAACAAAATCA+AGG - chr3_2:75481958-75481977 Msa0425150:CDS 30.0%
CTTAGTCTCAACAAAATCAA+GGG - chr3_2:75481959-75481978 Msa0425150:CDS 30.0%
! AAGTGAGTGTTAACATTTTC+AGG + chr3_2:75482066-75482085 None:intergenic 30.0%
ACTCAATGCAATCATTAGTT+AGG - chr3_2:75482089-75482108 Msa0425150:CDS 30.0%
TTGAATTGTTTGTCCAAACT+GGG + chr3_2:75482191-75482210 None:intergenic 30.0%
! TGATCAGGAGAATTTTTCTT+TGG - chr3_2:75482560-75482579 Msa0425150:intron 30.0%
ACATGTAATATAGGACCAAA+TGG - chr3_2:75482629-75482648 Msa0425150:intron 30.0%
ACAAACTTGTCAAAACCATT+TGG + chr3_2:75482647-75482666 None:intergenic 30.0%
CAAAACTTGTCAAAACCATT+TGG + chr3_2:75482716-75482735 None:intergenic 30.0%
!!! CAAATGGTTTTGACAAGTTT+TGG - chr3_2:75482645-75482664 Msa0425150:intron 30.0%
AAACCAAATTGAGACAACAA+GGG + chr3_2:75482869-75482888 None:intergenic 30.0%
TAAACCAAATTGAGACAACA+AGG + chr3_2:75482870-75482889 None:intergenic 30.0%
AAATATTATTCATCGACGAG+AGG - chr3_2:75482943-75482962 Msa0425150:CDS 30.0%
AATATTATTCATCGACGAGA+GGG - chr3_2:75482944-75482963 Msa0425150:CDS 30.0%
! TTTTCACCCAAACTTGTAAT+AGG + chr3_2:75483305-75483324 None:intergenic 30.0%
! GAAGTAAATGTCTCTAAAGA+TGG + chr3_2:75483333-75483352 None:intergenic 30.0%
TTTCATTCAAATGGTCATTC+GGG - chr3_2:75483357-75483376 Msa0425150:intron 30.0%
GTCATATTTCAAAGCTTAGA+AGG + chr3_2:75483410-75483429 None:intergenic 30.0%
AGAAAGACAATGAAAATCGT+AGG + chr3_2:75483432-75483451 None:intergenic 30.0%
! TACGATTTTCATTGTCTTTC+TGG - chr3_2:75483431-75483450 Msa0425150:intron 30.0%
! ACGATTTTCATTGTCTTTCT+GGG - chr3_2:75483432-75483451 Msa0425150:intron 30.0%
! CTAAAGGCAATTTTCCATTT+AGG - chr3_2:75483589-75483608 Msa0425150:intron 30.0%
! AAAGAAGTGTGAATCACATT+TGG + chr3_2:75483741-75483760 None:intergenic 30.0%
AAATGAAAAATCCAACCTGA+AGG - chr3_2:75483885-75483904 Msa0425150:intron 30.0%
AATGAAAAATCCAACCTGAA+GGG - chr3_2:75483886-75483905 Msa0425150:intron 30.0%
ATACATGGCATTCAACATAA+TGG + chr3_2:75484309-75484328 None:intergenic 30.0%
GACAAATGGAGTAATATACA+TGG + chr3_2:75484324-75484343 None:intergenic 30.0%
GACACTTAATAAGAGACAAA+TGG + chr3_2:75484338-75484357 None:intergenic 30.0%
CCCTTATTAATAGTAGTTAG+TGG + chr3_2:75484441-75484460 None:intergenic 30.0%
TGACAGAAGTCTCATATAAA+CGG + chr3_2:75484546-75484565 None:intergenic 30.0%
! ACTCAATTGTGATCTTTTAC+AGG - chr3_2:75484657-75484676 Msa0425150:intron 30.0%
ATATGCAGAAATACAACCAT+CGG - chr3_2:75484846-75484865 Msa0425150:CDS 30.0%
TTGAAGTGCAGAAAGAAGAA+TGG - chr3_2:75481678-75481697 Msa0425150:three_prime_UTR 35.0%
GTTTGTTCTCTTGTAGTTGT+AGG - chr3_2:75481890-75481909 Msa0425150:exon 35.0%
ATGGAACTGAGAATAAACCA+AGG - chr3_2:75481933-75481952 Msa0425150:CDS 35.0%
TTGTTGAGACTAAGTAACCT+TGG + chr3_2:75481953-75481972 None:intergenic 35.0%
CGTATAAGACTATTAGGCTA+AGG - chr3_2:75482165-75482184 Msa0425150:intron 35.0%
GTTGAATTGTTTGTCCAAAC+TGG + chr3_2:75482192-75482211 None:intergenic 35.0%
TCACAGTGCTATACTGAATA+AGG - chr3_2:75482295-75482314 Msa0425150:intron 35.0%
AAAAAAAAAGGAGCAGGGTT+AGG + chr3_2:75482909-75482928 None:intergenic 35.0%
! CTATTTTCCGTAGTATATCC+CGG + chr3_2:75483069-75483088 None:intergenic 35.0%
!!! TAGTTTTGGTTTGGTTTGCT+GGG + chr3_2:75483186-75483205 None:intergenic 35.0%
!!! TTAGTTTTGGTTTGGTTTGC+TGG + chr3_2:75483187-75483206 None:intergenic 35.0%
TATGTTACTGTTAGTGGAGA+AGG + chr3_2:75483235-75483254 None:intergenic 35.0%
TAGGAAGCCTATTACAAGTT+TGG - chr3_2:75483295-75483314 Msa0425150:intron 35.0%
AGGAAGCCTATTACAAGTTT+GGG - chr3_2:75483296-75483315 Msa0425150:intron 35.0%
! AGGCAATTTTCCATTTAGGT+TGG - chr3_2:75483593-75483612 Msa0425150:intron 35.0%
CATTTGTGAAGTCACATTTC+CGG + chr3_2:75483870-75483889 None:intergenic 35.0%
ATGAAAAATCCAACCTGAAG+GGG - chr3_2:75483887-75483906 Msa0425150:intron 35.0%
ATGTCAGATGCTAAGTTTGA+CGG - chr3_2:75483931-75483950 Msa0425150:intron 35.0%
GACAGAAGTTGTAATGTCAA+AGG - chr3_2:75483963-75483982 Msa0425150:intron 35.0%
TTCTTACGATTCTAAACACC+TGG - chr3_2:75484103-75484122 Msa0425150:intron 35.0%
TATAAGTTTATACGTGCTCC+AGG + chr3_2:75484124-75484143 None:intergenic 35.0%
TATGAATCACAACTTCCAAG+TGG + chr3_2:75484599-75484618 None:intergenic 35.0%
TGAGTCAGTGTCTTGTAATA+TGG + chr3_2:75484642-75484661 None:intergenic 35.0%
! ATTGTGATCTTTTACAGGTG+TGG - chr3_2:75484662-75484681 Msa0425150:intron 35.0%
GTGTTGGATCGTGTTAATTT+CGG - chr3_2:75484699-75484718 Msa0425150:intron 35.0%
TGTTGGATCGTGTTAATTTC+GGG - chr3_2:75484700-75484719 Msa0425150:intron 35.0%
!! TTTAGGAACACAGTTTTGTC+AGG - chr3_2:75484747-75484766 Msa0425150:intron 35.0%
!! GTTTTTGAGGACACTATCAT+TGG - chr3_2:75484804-75484823 Msa0425150:CDS 35.0%
! CAAGGCACTCTTATATATCA+CGG + chr3_2:75484969-75484988 None:intergenic 35.0%
!! TATATAAGAGTGCCTTGATG+AGG - chr3_2:75484972-75484991 Msa0425150:intron 35.0%
TTTGGTTGAGTAGTTGCGTA+TGG + chr3_2:75481740-75481759 None:intergenic 40.0%
TCTCTTGTAGTTGTAGGAGA+AGG - chr3_2:75481896-75481915 Msa0425150:exon 40.0%
ATAAGCTGCAAGAATACCAC+AGG + chr3_2:75481990-75482009 None:intergenic 40.0%
GTTCAATGAGACGCTTGATT+TGG - chr3_2:75482350-75482369 Msa0425150:intron 40.0%
TACTCTCAACATATGCACTC+AGG - chr3_2:75482461-75482480 Msa0425150:intron 40.0%
ACTCTCAACATATGCACTCA+GGG - chr3_2:75482462-75482481 Msa0425150:intron 40.0%
!! GTTTTGGCACTTGTCGTTAA+TGG - chr3_2:75482730-75482749 Msa0425150:intron 40.0%
TCGTTAATGGCAATTGTCTG+TGG - chr3_2:75482743-75482762 Msa0425150:intron 40.0%
CTTTCTTCTTCTACACCAGT+TGG + chr3_2:75482785-75482804 None:intergenic 40.0%
! GATCCCTTGTTGTCTCAATT+TGG - chr3_2:75482863-75482882 Msa0425150:CDS 40.0%
TAGCGACAGAAATACAACAG+TGG - chr3_2:75482995-75483014 Msa0425150:CDS 40.0%
ATACAACAGTGGCCGTATAT+AGG - chr3_2:75483006-75483025 Msa0425150:CDS 40.0%
!!! GTTGGTTTTCGCTTTGGTTT+TGG + chr3_2:75483136-75483155 None:intergenic 40.0%
!!! AGTTTTGGTTTGGTTTGCTG+GGG + chr3_2:75483185-75483204 None:intergenic 40.0%
GTCTGCTATGTTACTGTTAG+TGG + chr3_2:75483241-75483260 None:intergenic 40.0%
AACATAGCAGACCTAACACA+TGG - chr3_2:75483249-75483268 Msa0425150:intron 40.0%
TAACCAAACCCATGTGTAGA+GGG + chr3_2:75483277-75483296 None:intergenic 40.0%
GGTAAAATGTCAAGAGTCTG+AGG - chr3_2:75483378-75483397 Msa0425150:intron 40.0%
!! TTCATTGTCTTTCTGGGATC+TGG - chr3_2:75483438-75483457 Msa0425150:intron 40.0%
GTGTGAATCACATTTGGCTA+AGG + chr3_2:75483735-75483754 None:intergenic 40.0%
! GCATTTGTTGGCAACACAAT+TGG - chr3_2:75483808-75483827 Msa0425150:intron 40.0%
AACACAATTGGTCAGGCAAA+TGG - chr3_2:75483820-75483839 Msa0425150:intron 40.0%
! ACGACAAAGCATTAGATCTC+CGG - chr3_2:75483848-75483867 Msa0425150:intron 40.0%
ATGTCAAAGGCTTATGCAGT+TGG - chr3_2:75483976-75483995 Msa0425150:intron 40.0%
TGTCAAAGGCTTATGCAGTT+GGG - chr3_2:75483977-75483996 Msa0425150:intron 40.0%
TCAACTGAGTCTGAATGTTG+AGG - chr3_2:75484037-75484056 Msa0425150:intron 40.0%
!! TTTGAAAGTGTTCAGCCACT+TGG - chr3_2:75484581-75484600 Msa0425150:intron 40.0%
ATCTTCAGGGAGCTGTATTT+AGG - chr3_2:75484730-75484749 Msa0425150:intron 40.0%
TTCCAGTTTAGCATCGTCAA+AGG + chr3_2:75484778-75484797 None:intergenic 40.0%
TTTGACGATGCTAAACTGGA+AGG - chr3_2:75484777-75484796 Msa0425150:CDS 40.0%
! TCTACTAGTTCTCCTCATCA+AGG + chr3_2:75484987-75485006 None:intergenic 40.0%
ACACCCTTGCTTCTTATCTG+CGG + chr3_2:75481624-75481643 None:intergenic 45.0%
CGGGACTTGAATTGAAAGGT+TGG + chr3_2:75481704-75481723 None:intergenic 45.0%
TTCGCGGGACTTGAATTGAA+AGG + chr3_2:75481708-75481727 None:intergenic 45.0%
AGTGGTGAAACATGGTCGTT+TGG + chr3_2:75481758-75481777 None:intergenic 45.0%
GAAGCAGAAGTGGTGAAACA+TGG + chr3_2:75481766-75481785 None:intergenic 45.0%
CCAGAGCAAGTGATTGTGAA+GGG + chr3_2:75481790-75481809 None:intergenic 45.0%
ACCAGAGCAAGTGATTGTGA+AGG + chr3_2:75481791-75481810 None:intergenic 45.0%
!! AAAATCAAGGGTGTTGCCTG+TGG - chr3_2:75481971-75481990 Msa0425150:CDS 45.0%
AACCTGAGTAGCAGCAGTAA+CGG + chr3_2:75482035-75482054 None:intergenic 45.0%
TATTAGGCTAAGGCCCAGTT+TGG - chr3_2:75482175-75482194 Msa0425150:intron 45.0%
CTCTCAACATATGCACTCAG+GGG - chr3_2:75482463-75482482 Msa0425150:intron 45.0%
ACTCAGGGGAAGAGATCAAA+TGG - chr3_2:75482477-75482496 Msa0425150:intron 45.0%
CACTCGGTATCATGTTAGCA+TGG + chr3_2:75482533-75482552 None:intergenic 45.0%
TCCTGATCAACTGTGACACT+CGG + chr3_2:75482549-75482568 None:intergenic 45.0%
TGGCAATTGTCTGTGGAATG+TGG - chr3_2:75482750-75482769 Msa0425150:intron 45.0%
TGTCTGTGGAATGTGGTCAT+AGG - chr3_2:75482757-75482776 Msa0425150:intron 45.0%
ATGTGGTCATAGGAACCAAC+TGG - chr3_2:75482767-75482786 Msa0425150:intron 45.0%
AAAAGGAGCAGGGTTAGGAA+GGG + chr3_2:75482904-75482923 None:intergenic 45.0%
AAAAAGGAGCAGGGTTAGGA+AGG + chr3_2:75482905-75482924 None:intergenic 45.0%
TAAGACACTCCCAAAACTCG+CGG - chr3_2:75482969-75482988 Msa0425150:CDS 45.0%
!! TCGCTATTTCCGCGAGTTTT+GGG + chr3_2:75482981-75483000 None:intergenic 45.0%
! TTTGGTGTGCCGCCTATATA+CGG + chr3_2:75483021-75483040 None:intergenic 45.0%
!! TTCGAGTGGTTTGGGTGTTT+TGG + chr3_2:75483039-75483058 None:intergenic 45.0%
GCGTCATATTCGAGTGGTTT+GGG + chr3_2:75483047-75483066 None:intergenic 45.0%
AAACCACTCGAATATGACGC+CGG - chr3_2:75483047-75483066 Msa0425150:intron 45.0%
TATGACGCCGGGATATACTA+CGG - chr3_2:75483059-75483078 Msa0425150:intron 45.0%
AACCAAACCCATGTGTAGAG+GGG + chr3_2:75483276-75483295 None:intergenic 45.0%
CTAACCAAACCCATGTGTAG+AGG + chr3_2:75483278-75483297 None:intergenic 45.0%
! CTCTACACATGGGTTTGGTT+AGG - chr3_2:75483276-75483295 Msa0425150:intron 45.0%
! GGTCTTGTACTAGGAAGTCT+CGG - chr3_2:75483459-75483478 Msa0425150:intron 45.0%
ATTGGGCTCAGTTGACAATG+GGG + chr3_2:75483776-75483795 None:intergenic 45.0%
GATTGGGCTCAGTTGACAAT+GGG + chr3_2:75483777-75483796 None:intergenic 45.0%
TGTTGGCAACACAATTGGTC+AGG - chr3_2:75483813-75483832 Msa0425150:intron 45.0%
GTCAAAGGCTTATGCAGTTG+GGG - chr3_2:75483978-75483997 Msa0425150:intron 45.0%
TCAAAGGCTTATGCAGTTGG+GGG - chr3_2:75483979-75483998 Msa0425150:intron 45.0%
GGACTTCTCAAATGCAGTGT+TGG - chr3_2:75484683-75484702 Msa0425150:intron 45.0%
TTTCGGGAAAGCAGATCTTC+AGG - chr3_2:75484716-75484735 Msa0425150:intron 45.0%
TTCGGGAAAGCAGATCTTCA+GGG - chr3_2:75484717-75484736 Msa0425150:intron 45.0%
CAGTTTAGCATCGTCAAAGG+TGG + chr3_2:75484775-75484794 None:intergenic 45.0%
CACCTTTGACGATGCTAAAC+TGG - chr3_2:75484773-75484792 Msa0425150:CDS 45.0%
!! ACTGGAAGGTGCAGTTTTTG+AGG - chr3_2:75484791-75484810 Msa0425150:CDS 45.0%
GCAGATAAGAAGCAAGGGTG+TGG - chr3_2:75481623-75481642 Msa0425150:three_prime_UTR 50.0%
! TAAGAAGCAAGGGTGTGGAG+TGG - chr3_2:75481628-75481647 Msa0425150:three_prime_UTR 50.0%
GTATGGACAAACTCGTTCGC+GGG + chr3_2:75481723-75481742 None:intergenic 50.0%
CGTATGGACAAACTCGTTCG+CGG + chr3_2:75481724-75481743 None:intergenic 50.0%
TGTGAAGGGTGAAGCAGAAG+TGG + chr3_2:75481776-75481795 None:intergenic 50.0%
CCCTTCACAATCACTTGCTC+TGG - chr3_2:75481787-75481806 Msa0425150:three_prime_UTR 50.0%
GAAGGCGAAGCTGAGTTAGA+TGG - chr3_2:75481914-75481933 Msa0425150:CDS 50.0%
ACCTGAGTAGCAGCAGTAAC+GGG + chr3_2:75482034-75482053 None:intergenic 50.0%
ACCGAGTGTCACAGTTGATC+AGG - chr3_2:75482545-75482564 Msa0425150:intron 50.0%
!! GTCGCTATTTCCGCGAGTTT+TGG + chr3_2:75482982-75483001 None:intergenic 50.0%
CAACAGTGGCCGTATATAGG+CGG - chr3_2:75483009-75483028 Msa0425150:CDS 50.0%
GGCGTCATATTCGAGTGGTT+TGG + chr3_2:75483048-75483067 None:intergenic 50.0%
AACCACTCGAATATGACGCC+GGG - chr3_2:75483048-75483067 Msa0425150:intron 50.0%
!!! TCGCTTTGGTTTTGGCTCCT+GGG + chr3_2:75483128-75483147 None:intergenic 50.0%
!!! TTCGCTTTGGTTTTGGCTCC+TGG + chr3_2:75483129-75483148 None:intergenic 50.0%
!!! GCAGTGGTTGGTTTTCGCTT+TGG + chr3_2:75483142-75483161 None:intergenic 50.0%
AAGCGAAAACCAACCACTGC+AGG - chr3_2:75483142-75483161 Msa0425150:intron 50.0%
AGCGAAAACCAACCACTGCA+GGG - chr3_2:75483143-75483162 Msa0425150:intron 50.0%
!! TTTTTAGGCCCTGCAGTGGT+TGG + chr3_2:75483154-75483173 None:intergenic 50.0%
TGTAGAGGGGACCATGTGTT+AGG + chr3_2:75483263-75483282 None:intergenic 50.0%
ACATGGTCCCCTCTACACAT+GGG - chr3_2:75483266-75483285 Msa0425150:intron 50.0%
!! CTGGGATCTGGTCTTGTACT+AGG - chr3_2:75483450-75483469 Msa0425150:intron 50.0%
TTGGGCTCAGTTGACAATGG+GGG + chr3_2:75483775-75483794 None:intergenic 50.0%
CGATTGGGCTCAGTTGACAA+TGG + chr3_2:75483778-75483797 None:intergenic 50.0%
AATGCACGTTCGCAGCGATT+GGG + chr3_2:75483793-75483812 None:intergenic 50.0%
AAATGCACGTTCGCAGCGAT+TGG + chr3_2:75483794-75483813 None:intergenic 50.0%
AAATACAACCATCGGCGACG+AGG - chr3_2:75484854-75484873 Msa0425150:CDS 50.0%
AATACAACCATCGGCGACGA+GGG - chr3_2:75484855-75484874 Msa0425150:CDS 50.0%
TCCCGTTACTGCTGCTACTC+AGG - chr3_2:75482030-75482049 Msa0425150:CDS 55.0%
ATCCCGGCGTCATATTCGAG+TGG + chr3_2:75483053-75483072 None:intergenic 55.0%
!!! GGTGTTTTTAGGCCCTGCAG+TGG + chr3_2:75483158-75483177 None:intergenic 55.0%
! GCTGGGGCTCAGGTGTTTTT+AGG + chr3_2:75483169-75483188 None:intergenic 55.0%
CACATGGTCCCCTCTACACA+TGG - chr3_2:75483265-75483284 Msa0425150:intron 55.0%
GTCCCCTCTACACATGGGTT+TGG - chr3_2:75483271-75483290 Msa0425150:intron 55.0%
CGCTGCGAACGTGCATTTGT+TGG - chr3_2:75483796-75483815 Msa0425150:intron 55.0%
CAGAGTCTTCCCCTTCAGGT+TGG + chr3_2:75483899-75483918 None:intergenic 55.0%
CAGACAGAGTCTTCCCCTTC+AGG + chr3_2:75483903-75483922 None:intergenic 55.0%
! GCAGTTGGGGGCAGCTTTAA+AGG - chr3_2:75483991-75484010 Msa0425150:intron 55.0%
! ACGCAGAGGTATGCTGCTGC+TGG + chr3_2:75483092-75483111 None:intergenic 60.0%
!! GGTTTGGTTTGCTGGGGCTC+AGG + chr3_2:75483179-75483198 None:intergenic 60.0%
!! GACGCTCGTTGGTGACGCAG+AGG + chr3_2:75483106-75483125 None:intergenic 65.0%
TTGGCTCCTGGGACGCTCGT+TGG + chr3_2:75483117-75483136 None:intergenic 65.0%
GACGAGGGTCGAGCTGAGCT+AGG - chr3_2:75484870-75484889 Msa0425150:CDS 65.0%
GCGTCACCAACGAGCGTCCC+AGG - chr3_2:75483108-75483127 Msa0425150:intron 70.0%
AGCTCGACCCTCGTCGCCGA+TGG + chr3_2:75484865-75484884 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 75481621 75485179 75481621 ID=Msa0425150;Name=Msa0425150
chr3_2 mRNA 75481621 75485179 75481621 ID=Msa0425150-mRNA-1;Parent=Msa0425150;Name=Msa0425150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=76|1|1|1|1|1|4|277|242
chr3_2 exon 75481621 75482121 75481621 ID=Msa0425150-mRNA-1:exon:19352;Parent=Msa0425150-mRNA-1
chr3_2 exon 75482788 75483034 75482788 ID=Msa0425150-mRNA-1:exon:19351;Parent=Msa0425150-mRNA-1
chr3_2 exon 75484749 75484894 75484749 ID=Msa0425150-mRNA-1:exon:19350;Parent=Msa0425150-mRNA-1
chr3_2 exon 75484992 75485179 75484992 ID=Msa0425150-mRNA-1:exon:19349;Parent=Msa0425150-mRNA-1
chr3_2 five_prime_UTR 75485104 75485179 75485104 ID=Msa0425150-mRNA-1:five_prime_utr;Parent=Msa0425150-mRNA-1
chr3_2 CDS 75484992 75485103 75484992 ID=Msa0425150-mRNA-1:cds;Parent=Msa0425150-mRNA-1
chr3_2 CDS 75484749 75484894 75484749 ID=Msa0425150-mRNA-1:cds;Parent=Msa0425150-mRNA-1
chr3_2 CDS 75482788 75483034 75482788 ID=Msa0425150-mRNA-1:cds;Parent=Msa0425150-mRNA-1
chr3_2 CDS 75481898 75482121 75481898 ID=Msa0425150-mRNA-1:cds;Parent=Msa0425150-mRNA-1
chr3_2 three_prime_UTR 75481621 75481897 75481621 ID=Msa0425150-mRNA-1:three_prime_utr;Parent=Msa0425150-mRNA-1
Gene Sequence

>Msa0425150

ATGGCCAACCTTTCAATTCAAGTCCCGCGAACGAGTTTGTCCATACGCAACTACTCAACCAAACGACCATGTTTCACCACTTCTGCTTCACCCTTCACAATCACTTGCTCTGTTGTAGGAGAAGGCGAAGCTGAGTTAGATGGAACTGAGAATAAACCAAGGTTACTTAGTCTCAACAAAATCAAGGGTGTTGCCTGTGGTATTCTTGCAGCTTATGCTGTTACTTCTACTTCATTTCCCGTTACTGCTGCTACTCAGAGACTGCCCCCATTGTCAACTGAGCCCAATCGCTGCGAACGTGCATTTGTTGGCAACACAATTGGTCAGGCAAATGGTGTGTACGACAAAGCATTAGATCTCCGGAAATGTGACTTCACAAATGAAAAATCCAACCTGAAGGGGAAGACTCTGTCTGCAGCACTAATGTCAGATGCTAAGTTTGACGGTGCTGACATGACAGAAGTTGTAATGTCAAAGGCTTATGCAGTTGGGGGCAGCTTTAAAGGTGTGGACTTCTCAAATGCAGTGTTGGATCGTGTTAATTTCGGGAAAGCAGATCTTCAGGGAGCTGTATTTAGGAACACAGTTTTGTCAGGCTCCACCTTTGACGATGCTAAACTGGAAGGTGCAGTTTTTGAGGACACTATCATTGGTTACATTGATCTCCAAAAGATATGCAGAAATACAACCATCGGCGACGAGGGTCGAGCTGAGCTAGGATGTCGATAA

Protein sequence

>Msa0425150

MANLSIQVPRTSLSIRNYSTKRPCFTTSASPFTITCSVVGEGEAELDGTENKPRLLSLNKIKGVACGILAAYAVTSTSFPVTAATQRLPPLSTEPNRCERAFVGNTIGQANGVYDKALDLRKCDFTNEKSNLKGKTLSAALMSDAKFDGADMTEVVMSKAYAVGGSFKGVDFSNAVLDRVNFGKADLQGAVFRNTVLSGSTFDDAKLEGAVFEDTIIGYIDLQKICRNTTIGDEGRAELGCR*