AlfalfaGEDB | Msa0707610

M. sativa cultivar zhongmu-4 / Msa0707610

KEGG: K00844
GO: GO:0001047 GO:0001067 GO:0001678 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004340 GO:0004396 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005773 GO:0005774 GO:0005829 GO:0005975 GO:0005996 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006355 GO:0006357 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006833 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0008270 GO:0008865 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009536 GO:0009743 GO:0009746 GO:0009747 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009987 GO:0010033 GO:0010118 GO:0010148 GO:0010182 GO:0010255 GO:0010468 GO:0010556 GO:0012501 GO:0016020 GO:0016021 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019158 GO:0019200 GO:0019219 GO:0019222 GO:0019318 GO:0019320 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019725 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0032787 GO:0032991 GO:0033500 GO:0034284 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042044 GO:0042221 GO:0042592 GO:0042593 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046365 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046872 GO:0046914 GO:0046939 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051156 GO:0051171 GO:0051179 GO:0051186 GO:0051188 GO:0051234 GO:0051252 GO:0051716 GO:0055082 GO:0055086 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080090 GO:0090332 GO:0090407 GO:0097159 GO:0098573 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00349.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0707610	XP_003630707.2	99.398	498	3	0	1	498	1	498	0.0	1010

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0707610	sp\|Q9SEK3\|HXK1_SPIOL	78.481	474	102	0	25	498	25	498	0.0	780

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0707610	G7L7F0	99.398	498	3	0	1	498	1	498	0.0	1010

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035090	Msa0707610	0.824933	6.170549e-54	-8.615850e-47
Msa0046700	Msa0707610	0.807677	4.497029e-50	-8.615850e-47
Msa0046860	Msa0707610	0.818763	1.653764e-52	-8.615850e-47
Msa0060720	Msa0707610	0.801468	8.877313e-49	-8.615850e-47
Msa0081300	Msa0707610	0.818277	2.132121e-52	-8.615850e-47
Msa0083570	Msa0707610	0.847890	8.682376e-60	-8.615850e-47
Msa0130120	Msa0707610	0.833695	4.600583e-56	-8.615850e-47
Msa0131230	Msa0707610	0.820297	7.389582e-53	-8.615850e-47
Msa0141770	Msa0707610	0.809730	1.637652e-50	-8.615850e-47
Msa0143360	Msa0707610	0.805314	1.416918e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0707610	MtrunA17_Chr8g0389821	99.398	498	3	0	1	498	1	498	0.0	1010
Msa0707610	MtrunA17_Chr6g0487071	78.541	466	100	0	33	498	31	496	0.0	766
Msa0707610	MtrunA17_Chr8g0340741	73.022	493	132	1	1	493	1	492	0.0	741
Msa0707610	MtrunA17_Chr1g0156571	57.616	453	190	2	40	492	42	492	0.0	521
Msa0707610	MtrunA17_Chr5g0396421	57.660	470	187	5	30	490	30	496	0.0	521
Msa0707610	MtrunA17_Chr4g0054541	57.595	158	65	1	228	385	5	160	1.57e-57	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0707610	AT4G29130.1	77.079	493	113	0	1	493	1	493	0.0	763
Msa0707610	AT2G19860.1	75.453	497	122	0	1	497	1	497	0.0	760
Msa0707610	AT2G19860.2	75.258	388	96	0	110	497	1	388	0.0	613
Msa0707610	AT1G50460.1	53.911	473	205	4	26	488	26	495	1.46e-176	506
Msa0707610	AT3G20040.1	52.429	494	227	3	1	488	1	492	7.26e-168	484
Msa0707610	AT1G47840.1	52.954	457	211	4	37	492	40	493	2.33e-165	477
Msa0707610	AT1G50460.3	51.970	406	182	4	93	488	17	419	2.11e-141	413
Msa0707610	AT1G50460.2	56.495	331	142	2	26	356	26	354	4.97e-130	382
Msa0707610	AT4G37840.1	46.187	459	235	5	32	487	33	482	7.80e-127	379
Msa0707610	AT1G47840.2	56.075	321	138	3	37	356	40	358	1.06e-118	354

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Find 161 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTGCAATCAAAATAA+TGG	0.272084	4_4:-81002051	None:intergenic
AAAGTTTAGATCTGATTCTG+TGG	0.547536	4_4:-80997607	None:intergenic
AAATCTTAATCCAACAAAGT+CGG	0.588607	4_4:-80997826	None:intergenic
AACCCTGCAATCAAAATAAT+GGG	0.419100	4_4:-81002050	None:intergenic
AACCGGTCATCAATTGAGGA+GGG	0.663823	4_4:-80999068	None:intergenic
AACTGTCTAAGCTTTCCAAT+TGG	0.495017	4_4:-80998004	None:intergenic
AAGAAAATGACAGTGCAGTT+AGG	0.464986	4_4:-80997675	None:intergenic
AAGAGCCGCCGCGGCACAAA+CGG	0.391798	4_4:-80997897	None:intergenic
AAGCAAACCTCAATTGCATC+TGG	0.396002	4_4:+80999301	Msa0707610:CDS
AAGCAAATTGAAGGATATAT+TGG	0.315046	4_4:+81001383	Msa0707610:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTTAGATCTGATTCTGT+GGG	-	chr4_4:80997609-80997628	None:intergenic	30.0%
AAAGTTTAGATCTGATTCTG+TGG	-	chr4_4:80997610-80997629	None:intergenic	30.0%
AATAAAGTTTCCGACTTTGT+TGG	+	chr4_4:80997816-80997835	Msa0707610:five_prime_UTR	30.0%
TTGGATTAAGATTTGAGTGA+TGG	+	chr4_4:80997835-80997854	Msa0707610:exon	30.0%
TGGATTAAGATTTGAGTGAT+GGG	+	chr4_4:80997836-80997855	Msa0707610:exon	30.0%
ACTTTCTCGAACTTATCATA+CGG	-	chr4_4:80997934-80997953	None:intergenic	30.0%
TACAATCACAAATCATGGAT+TGG	-	chr4_4:80998325-80998344	None:intergenic	30.0%
TTTGTGATTGTATCTGGTAT+TGG	+	chr4_4:80998333-80998352	Msa0707610:intron	30.0%
CAACACAAAATCAAATGCTT+TGG	-	chr4_4:80998847-80998866	None:intergenic	30.0%
ACATTGTCACATTATTTGCA+GGG	+	chr4_4:80998927-80998946	Msa0707610:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	80997580	81002452	80997580	ID=Msa0707610;Name=Msa0707610
chr4_4	mRNA	80997580	81002452	80997580	ID=Msa0707610-mRNA-1;Parent=Msa0707610;Name=Msa0707610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=274\|1\|1\|1\|1\|1\|9\|581\|498
chr4_4	exon	80997580	80998125	80997580	ID=Msa0707610-mRNA-1:exon:26417;Parent=Msa0707610-mRNA-1
chr4_4	exon	80998948	80999098	80998948	ID=Msa0707610-mRNA-1:exon:26418;Parent=Msa0707610-mRNA-1
chr4_4	exon	80999184	80999366	80999184	ID=Msa0707610-mRNA-1:exon:26419;Parent=Msa0707610-mRNA-1
chr4_4	exon	80999954	81000028	80999954	ID=Msa0707610-mRNA-1:exon:26420;Parent=Msa0707610-mRNA-1
chr4_4	exon	81000221	81000376	81000221	ID=Msa0707610-mRNA-1:exon:26421;Parent=Msa0707610-mRNA-1
chr4_4	exon	81000488	81000586	81000488	ID=Msa0707610-mRNA-1:exon:26422;Parent=Msa0707610-mRNA-1
chr4_4	exon	81000674	81000804	81000674	ID=Msa0707610-mRNA-1:exon:26423;Parent=Msa0707610-mRNA-1
chr4_4	exon	81001326	81001407	81001326	ID=Msa0707610-mRNA-1:exon:26424;Parent=Msa0707610-mRNA-1
chr4_4	exon	81001524	81002452	81001524	ID=Msa0707610-mRNA-1:exon:26425;Parent=Msa0707610-mRNA-1
chr4_4	five_prime_UTR	80997580	80997853	80997580	ID=Msa0707610-mRNA-1:five_prime_utr;Parent=Msa0707610-mRNA-1
chr4_4	CDS	80997854	80998125	80997854	ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1
chr4_4	CDS	80998948	80999098	80998948	ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1
chr4_4	CDS	80999184	80999366	80999184	ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1
chr4_4	CDS	80999954	81000028	80999954	ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1
chr4_4	CDS	81000221	81000376	81000221	ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1
chr4_4	CDS	81000488	81000586	81000488	ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1
chr4_4	CDS	81000674	81000804	81000674	ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1
chr4_4	CDS	81001326	81001407	81001326	ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1
chr4_4	CDS	81001524	81001871	81001524	ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1
chr4_4	three_prime_UTR	81001872	81002452	81001872	ID=Msa0707610-mRNA-1:three_prime_utr;Parent=Msa0707610-mRNA-1

Gene Sequence

>Msa0707610

ATGGGTAAGGTCGCGGTGGGAGCTGCGGTTGTTTGTGCCGCCGCCGTTTGTGCCGCGGCGGCTCTTGTGGTGCGGCACCGTATGATAAGTTCGAGAAAGTGGACACGTAGCGTGGCTATTTTGAAGGAGTTTGGGGAAAAGTGTGAGACACCAATTGGAAAGCTTAGACAGTTGGCTGATGCTATGGATGTTGAGATGCATGCTGGTCTTGCATCTGAAGGTGGCAGCAAGCTTAGTATGTTAATCAGCTATGTTGATAATCTTCCTACTGGGGATGAGGAAGGACTCTATTATGCTCTAGATCTTGGTGGAACAAACTTCCGTGTCCTTCGTGTACATTTAGGTGGAAAAGAGAAAGGTGTCATTAGCCAAGAGTTTGATGAAGTTTCAATCCCTCCTCAATTGATGACCGGTTCTTCAGAGGGATTATTTGATTTTATAGCAGCAGCTCTCGCAAAATTTGTTGAGTCAGAACCTGAAGGTTTTCATCCTCCACCTGGCAGACAAAGAGAACTCGGTTTTACGTTCTCGTTCCCTGTGAAGCAAACCTCAATTGCATCTGGGACTCTAATAAAGTGGACTAAGGGTTTCAGTATTGATGATACCGTTGGCGAAGATGTGGTGGGAGAACTAACCAAGTCCTTGGAAAAAATTGGCCTGGATATGCGTGTTGCAGCTCTAGTTAATGATACAATTGGAACATTGGCTGGAGGCAGATTCTACAATCAGGATGTCATTGCTGCTGTGATTCTCGGTACTGGGACAAATGCAGCATATGTAGAACACGCGCATGCTATTCCAAAATGGCATGGCCTTATGCCAAAATCAGGAGATATGGTTATAAACATGGAATGGGGTAATTTCCGATCATCACATCTTCCTTTAACCGAATATGATCAAGATCTTGATGCTGAAAGCTTAAACCCTGGAGAACAGATTTTTGAGAAATTGCTTTCTGGCATGTACTTGGGGGAAATTGTACGGAGAGCTTTGTTGAAGATGGCCGAAGAGGCTGAATTTTTCGGAGATACTGTTCCCCCTAAGTTGAAAATTCCTTTTATACTTAGGACACCTGACATGTCTTCCATGCACCACGACACAACACCAGATCTGAAAGAGGTTGGAAGCAAATTGAAGGATATATTGGAGATATCTAATACATCACTAAAAACGAGGAAGATTGTTGTGGAACTCTGTGACATTGTCGCCAGTCGCGGTGCACGCCTTGCTGCTGCTGGTATTTTGGGAATCCTGAAGAAACTAGGAAGAGACACAGTTAAGGGTGGAGAGAAGCAAAAGTCAGTGATAGCATTGGATGGAGGGTTGTTTGAACACTACACTAAATTCAGAGTTTGCTTGGAGGATACGCTGAAGGAACTGCTTGGAGATGAGGCAGCTGAAACCGTTGTCGTTGAGCATGCTAATGATGGTTCAGGCATTGGAGCAGCGCTTCTAGCAGCTTCTCACTCTCAGTATTTGGGAGTAGAAGAGTCCTAA

Protein sequence

>Msa0707610

MGKVAVGAAVVCAAAVCAAAALVVRHRMISSRKWTRSVAILKEFGEKCETPIGKLRQLADAMDVEMHAGLASEGGSKLSMLISYVDNLPTGDEEGLYYALDLGGTNFRVLRVHLGGKEKGVISQEFDEVSIPPQLMTGSSEGLFDFIAAALAKFVESEPEGFHPPPGRQRELGFTFSFPVKQTSIASGTLIKWTKGFSIDDTVGEDVVGELTKSLEKIGLDMRVAALVNDTIGTLAGGRFYNQDVIAAVILGTGTNAAYVEHAHAIPKWHGLMPKSGDMVINMEWGNFRSSHLPLTEYDQDLDAESLNPGEQIFEKLLSGMYLGEIVRRALLKMAEEAEFFGDTVPPKLKIPFILRTPDMSSMHHDTTPDLKEVGSKLKDILEISNTSLKTRKIVVELCDIVASRGARLAAAGILGILKKLGRDTVKGGEKQKSVIALDGGLFEHYTKFRVCLEDTLKELLGDEAAETVVVEHANDGSGIGAALLAASHSQYLGVEES*