Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707610 | XP_003630707.2 | 99.398 | 498 | 3 | 0 | 1 | 498 | 1 | 498 | 0.0 | 1010 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707610 | sp|Q9SEK3|HXK1_SPIOL | 78.481 | 474 | 102 | 0 | 25 | 498 | 25 | 498 | 0.0 | 780 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707610 | G7L7F0 | 99.398 | 498 | 3 | 0 | 1 | 498 | 1 | 498 | 0.0 | 1010 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035090 | Msa0707610 | 0.824933 | 6.170549e-54 | -8.615850e-47 |
| Msa0046700 | Msa0707610 | 0.807677 | 4.497029e-50 | -8.615850e-47 |
| Msa0046860 | Msa0707610 | 0.818763 | 1.653764e-52 | -8.615850e-47 |
| Msa0060720 | Msa0707610 | 0.801468 | 8.877313e-49 | -8.615850e-47 |
| Msa0081300 | Msa0707610 | 0.818277 | 2.132121e-52 | -8.615850e-47 |
| Msa0083570 | Msa0707610 | 0.847890 | 8.682376e-60 | -8.615850e-47 |
| Msa0606140 | Msa0707610 | 0.810181 | 1.309511e-50 | -8.615850e-47 |
| Msa0619170 | Msa0707610 | 0.802819 | 4.680399e-49 | -8.615850e-47 |
| Msa0622400 | Msa0707610 | 0.819352 | 1.214823e-52 | -8.615850e-47 |
| Msa0624240 | Msa0707610 | 0.803982 | 2.688196e-49 | -8.615850e-47 |
| Msa0639040 | Msa0707610 | 0.822372 | 2.453266e-53 | -8.615850e-47 |
| Msa0647110 | Msa0707610 | 0.805674 | 1.191198e-49 | -8.615850e-47 |
| Msa0659640 | Msa0707610 | 0.800833 | 1.197045e-48 | -8.615850e-47 |
| Msa0704720 | Msa0707610 | 0.816934 | 4.281018e-52 | -8.615850e-47 |
| Msa0705030 | Msa0707610 | 0.806811 | 6.862924e-50 | -8.615850e-47 |
| Msa0707610 | Msa0716670 | 0.804386 | 2.214548e-49 | -8.615850e-47 |
| Msa0707610 | Msa0720380 | 0.804560 | 2.037276e-49 | -8.615850e-47 |
| Msa0707610 | Msa0733570 | 0.811357 | 7.289243e-51 | -8.615850e-47 |
| Msa0707610 | Msa0734430 | 0.816040 | 6.788940e-52 | -8.615850e-47 |
| Msa0707610 | Msa0749940 | 0.811979 | 5.337865e-51 | -8.615850e-47 |
| Msa0707610 | Msa0755570 | 0.818434 | 1.964061e-52 | -8.615850e-47 |
| Msa0707610 | Msa0774090 | 0.811338 | 7.361086e-51 | -8.615850e-47 |
| Msa0707610 | Msa0774680 | 0.816951 | 4.244427e-52 | -8.615850e-47 |
| Msa0707610 | Msa0790380 | 0.802430 | 5.630761e-49 | -8.615850e-47 |
| Msa0707610 | Msa0812230 | 0.808600 | 2.859565e-50 | -8.615850e-47 |
| Msa0707610 | Msa0814760 | 0.829777 | 4.257869e-55 | -8.615850e-47 |
| Msa0707610 | Msa0821490 | 0.813855 | 2.071719e-51 | -8.615850e-47 |
| Msa0707610 | Msa0830410 | 0.823002 | 1.750730e-53 | -8.615850e-47 |
| Msa0707610 | Msa0835030 | 0.827297 | 1.691095e-54 | -8.615850e-47 |
| Msa0707610 | Msa0869090 | 0.807333 | 5.319678e-50 | -8.615850e-47 |
| Msa0707610 | Msa0893390 | 0.806144 | 9.484937e-50 | -8.615850e-47 |
| Msa0707610 | Msa0900320 | 0.820925 | 5.299992e-53 | -8.615850e-47 |
| Msa0707610 | Msa0910650 | 0.833686 | 4.623603e-56 | -8.615850e-47 |
| Msa0707610 | Msa0914780 | 0.806069 | 9.838914e-50 | -8.615850e-47 |
| Msa0707610 | Msa0930160 | 0.836056 | 1.169845e-56 | -8.615850e-47 |
| Msa0707610 | Msa0944100 | 0.818224 | 2.191980e-52 | -8.615850e-47 |
| Msa0707610 | Msa0946650 | 0.801915 | 7.186131e-49 | -8.615850e-47 |
| Msa0707610 | Msa0959970 | 0.834865 | 2.340715e-56 | -8.615850e-47 |
| Msa0707610 | Msa0968010 | 0.800303 | 1.535365e-48 | -8.615850e-47 |
| Msa0707610 | Msa1042380 | 0.807740 | 4.360609e-50 | -8.615850e-47 |
| Msa0707610 | Msa1054620 | 0.813631 | 2.321660e-51 | -8.615850e-47 |
| Msa0707610 | Msa1090230 | 0.810452 | 1.144740e-50 | -8.615850e-47 |
| Msa0707610 | Msa1121630 | 0.816648 | 4.962278e-52 | -8.615850e-47 |
| Msa0707610 | Msa1125100 | 0.808075 | 3.700754e-50 | -8.615850e-47 |
| Msa0707610 | Msa1125150 | 0.813023 | 3.156728e-51 | -8.615850e-47 |
| Msa0707610 | Msa1128350 | 0.816464 | 5.457076e-52 | -8.615850e-47 |
| Msa0707610 | Msa1160480 | 0.800429 | 1.447320e-48 | -8.615850e-47 |
| Msa0707610 | Msa1173410 | 0.805161 | 1.525882e-49 | -8.615850e-47 |
| Msa0707610 | Msa1189630 | 0.835880 | 1.297146e-56 | -8.615850e-47 |
| Msa0707610 | Msa1190320 | 0.804603 | 1.996035e-49 | -8.615850e-47 |
| Msa0707610 | Msa1198420 | 0.802242 | 6.157786e-49 | -8.615850e-47 |
| Msa0707610 | Msa1206440 | 0.811710 | 6.110088e-51 | -8.615850e-47 |
| Msa0707610 | Msa1208470 | 0.801346 | 9.403797e-49 | -8.615850e-47 |
| Msa0707610 | Msa1209390 | 0.818409 | 1.990429e-52 | -8.615850e-47 |
| Msa0707610 | Msa1218720 | 0.823452 | 1.374430e-53 | -8.615850e-47 |
| Msa0707610 | Msa1224140 | 0.817303 | 3.536715e-52 | -8.615850e-47 |
| Msa0707610 | Msa1224150 | 0.828382 | 9.276600e-55 | -8.615850e-47 |
| Msa0707610 | Msa1244260 | 0.818774 | 1.644440e-52 | -8.615850e-47 |
| Msa0707610 | Msa1263460 | 0.813836 | 2.092199e-51 | -8.615850e-47 |
| Msa0707610 | Msa1269550 | 0.808471 | 3.047853e-50 | -8.615850e-47 |
| Msa0707610 | Msa1277600 | 0.825361 | 4.887914e-54 | -8.615850e-47 |
| Msa0707610 | Msa1302750 | 0.814416 | 1.557577e-51 | -8.615850e-47 |
| Msa0707610 | Msa1310300 | 0.842742 | 2.147755e-58 | -8.615850e-47 |
| Msa0707610 | Msa1324940 | 0.801702 | 7.947352e-49 | -8.615850e-47 |
| Msa0707610 | Msa1334690 | 0.827787 | 1.290011e-54 | -8.615850e-47 |
| Msa0707610 | Msa1337950 | 0.801109 | 1.051376e-48 | -8.615850e-47 |
| Msa0707610 | Msa1339250 | 0.801206 | 1.004485e-48 | -8.615850e-47 |
| Msa0707610 | Msa1348770 | 0.825823 | 3.798187e-54 | -8.615850e-47 |
| Msa0707610 | Msa1349720 | 0.805973 | 1.030754e-49 | -8.615850e-47 |
| Msa0707610 | Msa1352270 | 0.990055 | 7.455081e-181 | -8.615850e-47 |
| Msa0707610 | Msa1353040 | 0.810950 | 8.930718e-51 | -8.615850e-47 |
| Msa0707610 | Msa1364520 | 0.827643 | 1.396652e-54 | -8.615850e-47 |
| Msa0707610 | Msa1375630 | 0.810428 | 1.158512e-50 | -8.615850e-47 |
| Msa0707610 | Msa1376530 | 0.818607 | 1.794880e-52 | -8.615850e-47 |
| Msa0707610 | Msa1385940 | 0.804915 | 1.717476e-49 | -8.615850e-47 |
| Msa0707610 | Msa1386820 | 0.801370 | 9.298350e-49 | -8.615850e-47 |
| Msa0707610 | Msa1387650 | 0.808144 | 3.577166e-50 | -8.615850e-47 |
| Msa0707610 | Msa1412750 | 0.802967 | 4.363639e-49 | -8.615850e-47 |
| Msa0707610 | Msa1413220 | 0.807307 | 5.388794e-50 | -8.615850e-47 |
| Msa0707610 | Msa1419040 | 0.815488 | 9.009352e-52 | -8.615850e-47 |
| Msa0707610 | Msa1426870 | 0.807755 | 4.329006e-50 | -8.615850e-47 |
| Msa0707610 | Msa1429390 | 0.822253 | 2.615285e-53 | -8.615850e-47 |
| Msa0707610 | Msa1437320 | 0.801643 | 8.173176e-49 | -8.615850e-47 |
| Msa0707610 | Msa1437690 | 0.832766 | 7.838977e-56 | -8.615850e-47 |
| Msa0130120 | Msa0707610 | 0.833695 | 4.600583e-56 | -8.615850e-47 |
| Msa0131230 | Msa0707610 | 0.820297 | 7.389582e-53 | -8.615850e-47 |
| Msa0141770 | Msa0707610 | 0.809730 | 1.637652e-50 | -8.615850e-47 |
| Msa0143360 | Msa0707610 | 0.805314 | 1.416918e-49 | -8.615850e-47 |
| Msa0149070 | Msa0707610 | 0.805943 | 1.045782e-49 | -8.615850e-47 |
| Msa0156260 | Msa0707610 | 0.802727 | 4.889549e-49 | -8.615850e-47 |
| Msa0175900 | Msa0707610 | 0.844482 | 7.355594e-59 | -8.615850e-47 |
| Msa0181380 | Msa0707610 | 0.804195 | 2.427472e-49 | -8.615850e-47 |
| Msa0182610 | Msa0707610 | 0.805666 | 1.195786e-49 | -8.615850e-47 |
| Msa0185550 | Msa0707610 | 0.815585 | 8.572443e-52 | -8.615850e-47 |
| Msa0186750 | Msa0707610 | 0.818291 | 2.116715e-52 | -8.615850e-47 |
| Msa0190000 | Msa0707610 | 0.819833 | 9.434298e-53 | -8.615850e-47 |
| Msa0202630 | Msa0707610 | 0.808364 | 3.212061e-50 | -8.615850e-47 |
| Msa0206970 | Msa0707610 | 0.805298 | 1.428086e-49 | -8.615850e-47 |
| Msa0215980 | Msa0707610 | 0.814679 | 1.362238e-51 | -8.615850e-47 |
| Msa0218730 | Msa0707610 | 0.811129 | 8.169903e-51 | -8.615850e-47 |
| Msa0236350 | Msa0707610 | 0.802467 | 5.534510e-49 | -8.615850e-47 |
| Msa0369770 | Msa0707610 | 0.815520 | 8.865139e-52 | -8.615850e-47 |
| Msa0374400 | Msa0707610 | 0.806852 | 6.725571e-50 | -8.615850e-47 |
| Msa0377460 | Msa0707610 | 0.840392 | 8.941863e-58 | -8.615850e-47 |
| Msa0380420 | Msa0707610 | 0.817095 | 3.938058e-52 | -8.615850e-47 |
| Msa0384570 | Msa0707610 | 0.804521 | 2.075835e-49 | -8.615850e-47 |
| Msa0393540 | Msa0707610 | 0.804549 | 2.047852e-49 | -8.615850e-47 |
| Msa0399180 | Msa0707610 | 0.832139 | 1.120836e-55 | -8.615850e-47 |
| Msa0417140 | Msa0707610 | 0.803546 | 3.310623e-49 | -8.615850e-47 |
| Msa0423110 | Msa0707610 | 0.818755 | 1.660763e-52 | -8.615850e-47 |
| Msa0426890 | Msa0707610 | 0.811999 | 5.286828e-51 | -8.615850e-47 |
| Msa0429560 | Msa0707610 | 0.815823 | 7.586815e-52 | -8.615850e-47 |
| Msa0434630 | Msa0707610 | 0.809467 | 1.865392e-50 | -8.615850e-47 |
| Msa0436310 | Msa0707610 | 0.812462 | 4.189001e-51 | -8.615850e-47 |
| Msa0438990 | Msa0707610 | 0.806995 | 6.275270e-50 | -8.615850e-47 |
| Msa0452700 | Msa0707610 | 0.800453 | 1.431168e-48 | -8.615850e-47 |
| Msa0462120 | Msa0707610 | 0.802351 | 5.845920e-49 | -8.615850e-47 |
| Msa0463980 | Msa0707610 | 0.820947 | 5.240198e-53 | -8.615850e-47 |
| Msa0473320 | Msa0707610 | 0.818336 | 2.067326e-52 | -8.615850e-47 |
| Msa0476150 | Msa0707610 | 0.821483 | 3.941438e-53 | -8.615850e-47 |
| Msa0482020 | Msa0707610 | 0.811585 | 6.504938e-51 | -8.615850e-47 |
| Msa0253320 | Msa0707610 | 0.803599 | 3.228040e-49 | -8.615850e-47 |
| Msa0270230 | Msa0707610 | 0.812549 | 4.009732e-51 | -8.615850e-47 |
| Msa0284260 | Msa0707610 | 0.827284 | 1.703137e-54 | -8.615850e-47 |
| Msa0290040 | Msa0707610 | 0.803993 | 2.673462e-49 | -8.615850e-47 |
| Msa0304870 | Msa0707610 | 0.827981 | 1.158629e-54 | -8.615850e-47 |
| Msa0307460 | Msa0707610 | 0.820958 | 5.210369e-53 | -8.615850e-47 |
| Msa0308430 | Msa0707610 | 0.812675 | 3.763298e-51 | -8.615850e-47 |
| Msa0311910 | Msa0707610 | 0.817604 | 3.025180e-52 | -8.615850e-47 |
| Msa0313550 | Msa0707610 | 0.807103 | 5.952648e-50 | -8.615850e-47 |
| Msa0324060 | Msa0707610 | 0.816268 | 6.036422e-52 | -8.615850e-47 |
| Msa0341260 | Msa0707610 | 0.829470 | 5.057570e-55 | -8.615850e-47 |
| Msa0486200 | Msa0707610 | 0.826847 | 2.166431e-54 | -8.615850e-47 |
| Msa0486240 | Msa0707610 | 0.823665 | 1.225873e-53 | -8.615850e-47 |
| Msa0504740 | Msa0707610 | 0.831775 | 1.378431e-55 | -8.615850e-47 |
| Msa0509530 | Msa0707610 | 0.816944 | 4.258268e-52 | -8.615850e-47 |
| Msa0514630 | Msa0707610 | 0.805342 | 1.398104e-49 | -8.615850e-47 |
| Msa0517400 | Msa0707610 | 0.833754 | 4.446522e-56 | -8.615850e-47 |
| Msa0550720 | Msa0707610 | 0.813978 | 1.946439e-51 | -8.615850e-47 |
| Msa0560380 | Msa0707610 | 0.804608 | 1.990975e-49 | -8.615850e-47 |
| Msa0562040 | Msa0707610 | 0.810606 | 1.060188e-50 | -8.615850e-47 |
| Msa0577110 | Msa0707610 | 0.806981 | 6.315757e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707610 | MtrunA17_Chr8g0389821 | 99.398 | 498 | 3 | 0 | 1 | 498 | 1 | 498 | 0.0 | 1010 |
| Msa0707610 | MtrunA17_Chr6g0487071 | 78.541 | 466 | 100 | 0 | 33 | 498 | 31 | 496 | 0.0 | 766 |
| Msa0707610 | MtrunA17_Chr8g0340741 | 73.022 | 493 | 132 | 1 | 1 | 493 | 1 | 492 | 0.0 | 741 |
| Msa0707610 | MtrunA17_Chr1g0156571 | 57.616 | 453 | 190 | 2 | 40 | 492 | 42 | 492 | 0.0 | 521 |
| Msa0707610 | MtrunA17_Chr5g0396421 | 57.660 | 470 | 187 | 5 | 30 | 490 | 30 | 496 | 0.0 | 521 |
| Msa0707610 | MtrunA17_Chr4g0054541 | 57.595 | 158 | 65 | 1 | 228 | 385 | 5 | 160 | 1.57e-57 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707610 | AT4G29130.1 | 77.079 | 493 | 113 | 0 | 1 | 493 | 1 | 493 | 0.0 | 763 |
| Msa0707610 | AT2G19860.1 | 75.453 | 497 | 122 | 0 | 1 | 497 | 1 | 497 | 0.0 | 760 |
| Msa0707610 | AT2G19860.2 | 75.258 | 388 | 96 | 0 | 110 | 497 | 1 | 388 | 0.0 | 613 |
| Msa0707610 | AT1G50460.1 | 53.911 | 473 | 205 | 4 | 26 | 488 | 26 | 495 | 1.46e-176 | 506 |
| Msa0707610 | AT3G20040.1 | 52.429 | 494 | 227 | 3 | 1 | 488 | 1 | 492 | 7.26e-168 | 484 |
| Msa0707610 | AT1G47840.1 | 52.954 | 457 | 211 | 4 | 37 | 492 | 40 | 493 | 2.33e-165 | 477 |
| Msa0707610 | AT1G50460.3 | 51.970 | 406 | 182 | 4 | 93 | 488 | 17 | 419 | 2.11e-141 | 413 |
| Msa0707610 | AT1G50460.2 | 56.495 | 331 | 142 | 2 | 26 | 356 | 26 | 354 | 4.97e-130 | 382 |
| Msa0707610 | AT4G37840.1 | 46.187 | 459 | 235 | 5 | 32 | 487 | 33 | 482 | 7.80e-127 | 379 |
| Msa0707610 | AT1G47840.2 | 56.075 | 321 | 138 | 3 | 37 | 356 | 40 | 358 | 1.06e-118 | 354 |
| Msa0707610 | AT1G47845.1 | 45.882 | 170 | 79 | 4 | 255 | 423 | 26 | 183 | 1.85e-39 | 141 |
Find 161 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCTGCTGCTGGTATTT+TGG | 0.070351 | 4_4:+81001598 | Msa0707610:CDS |
| AGCTTCTCACTCTCAGTATT+TGG | 0.121428 | 4_4:+81001832 | Msa0707610:CDS |
| CTTACCATATCTCCTGATTT+TGG | 0.171892 | 4_4:-81000359 | None:intergenic |
| GGTGCTCCTTGGTCGGTAAC+AGG | 0.206605 | 4_4:+81002023 | Msa0707610:three_prime_UTR |
| AGCTACTATGCCTTAGTTAT+TGG | 0.231214 | 4_4:+81001956 | Msa0707610:three_prime_UTR |
| GGCATAAGGCCATGCCATTT+TGG | 0.231670 | 4_4:-81000338 | None:intergenic |
| TCTTGATCATATTCGGTTAA+AGG | 0.239859 | 4_4:-81000530 | None:intergenic |
| GTTATTGCCAAGGTAATTAA+AGG | 0.248601 | 4_4:+81001873 | Msa0707610:three_prime_UTR |
| TGAATTCAATCAAATTGTTT+TGG | 0.264450 | 4_4:+81002375 | Msa0707610:three_prime_UTR |
| AAACCCTGCAATCAAAATAA+TGG | 0.272084 | 4_4:-81002051 | None:intergenic |
| CATTAACTTCACGCACAAAA+TGG | 0.286173 | 4_4:-81002445 | None:intergenic |
| TGTCTCTTCCTAGTTTCTTC+AGG | 0.289084 | 4_4:-81001625 | None:intergenic |
| GTGGCATACCTAAGTATAAA+AGG | 0.291655 | 4_4:-81000791 | None:intergenic |
| CTTCCAACCTCTTTCAGATC+TGG | 0.295103 | 4_4:-81001363 | None:intergenic |
| CGTGTCCTTCGTGTACATTT+AGG | 0.310233 | 4_4:+80998997 | Msa0707610:CDS |
| AAGCAAATTGAAGGATATAT+TGG | 0.315046 | 4_4:+81001383 | Msa0707610:CDS |
| ATCAAGATCTTGATCATATT+CGG | 0.322885 | 4_4:-81000537 | None:intergenic |
| ATTACCTTGGCAATAACATT+AGG | 0.332025 | 4_4:-81001867 | None:intergenic |
| GCAATTGAGGTTTGCTTCAC+AGG | 0.339001 | 4_4:-80999295 | None:intergenic |
| GCTTCTCACTCTCAGTATTT+GGG | 0.370715 | 4_4:+81001833 | Msa0707610:CDS |
| AGCAAGGCGTGCACCGCGAC+TGG | 0.377407 | 4_4:-81001582 | None:intergenic |
| TAGATCTGATTCTGTGGGAT+TGG | 0.378933 | 4_4:-80997601 | None:intergenic |
| TATGTTGATAATCTTCCTAC+TGG | 0.383423 | 4_4:+80998103 | Msa0707610:CDS |
| ATTGCTTTCTGGCATGTACT+TGG | 0.384273 | 4_4:+81000685 | Msa0707610:CDS |
| CGCCGCGGCACAAACGGCGG+CGG | 0.385038 | 4_4:-80997891 | None:intergenic |
| GCTGCTGTGATTCTCGGTAC+TGG | 0.385075 | 4_4:+81000278 | Msa0707610:CDS |
| TGACAGTGCAGTTAGGAGTT+AGG | 0.389672 | 4_4:-80997668 | None:intergenic |
| CACTAAATTCAGAGTTTGCT+TGG | 0.390939 | 4_4:+81001712 | Msa0707610:CDS |
| TCTGCTATTGTTGTTAGTAC+TGG | 0.391365 | 4_4:+81002246 | Msa0707610:three_prime_UTR |
| AAGAGCCGCCGCGGCACAAA+CGG | 0.391798 | 4_4:-80997897 | None:intergenic |
| ACGCGCATGCTATTCCAAAA+TGG | 0.394976 | 4_4:+81000324 | Msa0707610:CDS |
| AAGCAAACCTCAATTGCATC+TGG | 0.396002 | 4_4:+80999301 | Msa0707610:CDS |
| AATAAAGTTTCCGACTTTGT+TGG | 0.396209 | 4_4:+80997816 | Msa0707610:five_prime_UTR |
| AGATCTGATTCTGTGGGATT+GGG | 0.401230 | 4_4:-80997600 | None:intergenic |
| GGTGCACGCCTTGCTGCTGC+TGG | 0.404478 | 4_4:+81001590 | Msa0707610:CDS |
| CAGGCTACATTCCGCAAAAC+AGG | 0.408393 | 4_4:-81002132 | None:intergenic |
| TTGTTGTGTGATTAACTAAA+CGG | 0.409138 | 4_4:+80997565 | None:intergenic |
| ATCATAATTACCTGTTCTCC+AGG | 0.409907 | 4_4:-81000575 | None:intergenic |
| GTCATTGCTGCTGTGATTCT+CGG | 0.415176 | 4_4:+81000272 | Msa0707610:CDS |
| AACCCTGCAATCAAAATAAT+GGG | 0.419100 | 4_4:-81002050 | None:intergenic |
| TGCCGCCGCCGTTTGTGCCG+CGG | 0.424501 | 4_4:+80997889 | Msa0707610:CDS |
| TATGCCAAAATCAGGAGATA+TGG | 0.424699 | 4_4:+81000355 | Msa0707610:CDS |
| ATTTATTTATAGTTGAAAAC+AGG | 0.430184 | 4_4:-81002151 | None:intergenic |
| GTAGGTTATAAACATGGAAT+GGG | 0.432293 | 4_4:+81000484 | Msa0707610:intron |
| CTCTATTATGCTCTAGATCT+TGG | 0.434188 | 4_4:+80998961 | Msa0707610:CDS |
| GGTGGAGGATGAAAACCTTC+AGG | 0.434285 | 4_4:-80999235 | None:intergenic |
| TTGAAACTTCATCAAACTCT+TGG | 0.434603 | 4_4:-80999044 | None:intergenic |
| CACACTTACCTCTGAAGAAC+CGG | 0.435644 | 4_4:-80999085 | None:intergenic |
| ATGTAGGTTAATGATACAAT+TGG | 0.441510 | 4_4:+81000215 | Msa0707610:intron |
| GCTAATGATGGTTCAGGCAT+TGG | 0.443734 | 4_4:+81001794 | Msa0707610:CDS |
| ACTAGGAAGAGACACAGTTA+AGG | 0.444325 | 4_4:+81001634 | Msa0707610:CDS |
| GAGCATGCTAATGATGGTTC+AGG | 0.445261 | 4_4:+81001788 | Msa0707610:CDS |
| CCGAGTTCTCTTTGTCTGCC+AGG | 0.447341 | 4_4:-80999256 | None:intergenic |
| GATACAATTGGAACATTGGC+TGG | 0.447474 | 4_4:+81000227 | Msa0707610:CDS |
| GTGCTCCTTGGTCGGTAACA+GGG | 0.450716 | 4_4:+81002024 | Msa0707610:three_prime_UTR |
| AAGCTTAAACCCTGGAGAAC+AGG | 0.452669 | 4_4:+81000565 | Msa0707610:CDS |
| TTGCTTTCTGGCATGTACTT+GGG | 0.455566 | 4_4:+81000686 | Msa0707610:CDS |
| TGCTTTCTGGCATGTACTTG+GGG | 0.456526 | 4_4:+81000687 | Msa0707610:CDS |
| ACGGAGAGCTTTGTTGAAGA+TGG | 0.457787 | 4_4:+81000718 | Msa0707610:CDS |
| CATGGCCTTATGCCAAAATC+AGG | 0.461136 | 4_4:+81000347 | Msa0707610:CDS |
| TCTCTTTGTCTGCCAGGTGG+AGG | 0.463034 | 4_4:-80999250 | None:intergenic |
| GAAAAGTGTGAGACACCAAT+TGG | 0.463065 | 4_4:+80997989 | Msa0707610:CDS |
| AAGAAAATGACAGTGCAGTT+AGG | 0.464986 | 4_4:-80997675 | None:intergenic |
| TGTAGGTTATAAACATGGAA+TGG | 0.471322 | 4_4:+81000483 | Msa0707610:intron |
| TAGACAGTTGGCTGATGCTA+TGG | 0.474066 | 4_4:+80998018 | Msa0707610:CDS |
| TTACATGCCTTTAATTACCT+TGG | 0.477218 | 4_4:-81001880 | None:intergenic |
| TTGGGAATCCTGAAGAAACT+AGG | 0.478456 | 4_4:+81001617 | Msa0707610:CDS |
| CTGCTGTGATTCTCGGTACT+GGG | 0.480970 | 4_4:+81000279 | Msa0707610:CDS |
| TAGAGTCCCAGATGCAATTG+AGG | 0.487255 | 4_4:-80999308 | None:intergenic |
| GACTCTAATAAAGTGGACTA+AGG | 0.488261 | 4_4:+80999324 | Msa0707610:CDS |
| GGGAGAACTAACCAAGTCCT+TGG | 0.493228 | 4_4:+80999971 | Msa0707610:CDS |
| AACTGTCTAAGCTTTCCAAT+TGG | 0.495017 | 4_4:-80998004 | None:intergenic |
| CGGGCAGACCATGTCTGCTG+TGG | 0.495531 | 4_4:+81001999 | Msa0707610:three_prime_UTR |
| TGGTGTTGTGTCGTGGTGCA+TGG | 0.502741 | 4_4:-81001343 | None:intergenic |
| GTATGATAAGTTCGAGAAAG+TGG | 0.505548 | 4_4:+80997933 | Msa0707610:CDS |
| AGCCGCCGCGGCACAAACGG+CGG | 0.505594 | 4_4:-80997894 | None:intergenic |
| CAATTGAGGTTTGCTTCACA+GGG | 0.506739 | 4_4:-80999294 | None:intergenic |
| TCACATTATTTGCAGGGATG+AGG | 0.508861 | 4_4:+80998933 | Msa0707610:intron |
| ATCCCTCCTCAATTGATGAC+CGG | 0.509765 | 4_4:+80999066 | Msa0707610:CDS |
| GGGCAGACCATGTCTGCTGT+GGG | 0.512585 | 4_4:+81002000 | Msa0707610:three_prime_UTR |
| CGCCGCCGTTTGTGCCGCGG+CGG | 0.515327 | 4_4:+80997892 | Msa0707610:CDS |
| GTCTATAGGACCAATAACTA+AGG | 0.519380 | 4_4:-81001966 | None:intergenic |
| TAATGATACAATTGGAACAT+TGG | 0.520504 | 4_4:+81000223 | Msa0707610:CDS |
| GAGCTGCAACACGCATATCC+AGG | 0.521304 | 4_4:-81000004 | None:intergenic |
| CTAGGAAGAGACACAGTTAA+GGG | 0.522099 | 4_4:+81001635 | Msa0707610:CDS |
| TGGAGGCAGATTCTACAATC+AGG | 0.523047 | 4_4:+81000247 | Msa0707610:CDS |
| CATGCTGGTCTTGCATCTGA+AGG | 0.526173 | 4_4:+80998052 | Msa0707610:CDS |
| TTGTGCCGCGGCGGCTCTTG+TGG | 0.527226 | 4_4:+80997901 | Msa0707610:CDS |
| TTGGATTAAGATTTGAGTGA+TGG | 0.527581 | 4_4:+80997835 | Msa0707610:exon |
| CCCGTTAGTTAAAAGTCTAT+AGG | 0.527743 | 4_4:-81001980 | None:intergenic |
| GTCGTTGAGCATGCTAATGA+TGG | 0.530025 | 4_4:+81001782 | Msa0707610:CDS |
| CAGTGATAGCATTGGATGGA+GGG | 0.537158 | 4_4:+81001675 | Msa0707610:CDS |
| CATTTAGGTGGAAAAGAGAA+AGG | 0.537341 | 4_4:+80999012 | Msa0707610:CDS |
| AGAGGTTGGAAGCAAATTGA+AGG | 0.538515 | 4_4:+81001374 | Msa0707610:CDS |
| GAAGGAACTGCTTGGAGATG+AGG | 0.540931 | 4_4:+81001745 | Msa0707610:CDS |
| TAAGGTCGCGGTGGGAGCTG+CGG | 0.541422 | 4_4:+80997859 | Msa0707610:CDS |
| CATCTGGGACTCTAATAAAG+TGG | 0.541566 | 4_4:+80999317 | Msa0707610:CDS |
| TGCTCCTTGGTCGGTAACAG+GGG | 0.542709 | 4_4:+81002025 | Msa0707610:three_prime_UTR |
| ATGGATGTTGAGATGCATGC+TGG | 0.543124 | 4_4:+80998037 | Msa0707610:CDS |
| AAGTTTAGATCTGATTCTGT+GGG | 0.544444 | 4_4:-80997606 | None:intergenic |
| TAAGATTTGAGTGATGGGTA+AGG | 0.546558 | 4_4:+80997841 | Msa0707610:exon |
| AAAGTTTAGATCTGATTCTG+TGG | 0.547536 | 4_4:-80997607 | None:intergenic |
| GTCCTTCGTGTACATTTAGG+TGG | 0.550016 | 4_4:+80999000 | Msa0707610:CDS |
| GATGCTGAAAGCTTAAACCC+TGG | 0.551347 | 4_4:+81000557 | Msa0707610:CDS |
| TAAATTCAGAGTTTGCTTGG+AGG | 0.552574 | 4_4:+81001715 | Msa0707610:CDS |
| GCAGACCATGTCTGCTGTGG+GGG | 0.553349 | 4_4:+81002002 | Msa0707610:three_prime_UTR |
| GAAGAACCGGTCATCAATTG+AGG | 0.558178 | 4_4:-80999072 | None:intergenic |
| TATTATGCTCTAGATCTTGG+TGG | 0.558418 | 4_4:+80998964 | Msa0707610:CDS |
| CAAATTGAAGGATATATTGG+AGG | 0.558923 | 4_4:+81001386 | Msa0707610:CDS |
| AATTGGAAAGCTTAGACAGT+TGG | 0.560728 | 4_4:+80998006 | Msa0707610:CDS |
| GCAAAAGTCAGTGATAGCAT+TGG | 0.560739 | 4_4:+81001667 | Msa0707610:CDS |
| ACACCAGATCTGAAAGAGGT+TGG | 0.565677 | 4_4:+81001360 | Msa0707610:CDS |
| CCGCGGCGGCTCTTGTGGTG+CGG | 0.566167 | 4_4:+80997906 | Msa0707610:CDS |
| GCTGGTCTTGCATCTGAAGG+TGG | 0.566582 | 4_4:+80998055 | Msa0707610:CDS |
| CACAACACCAGATCTGAAAG+AGG | 0.571670 | 4_4:+81001356 | Msa0707610:CDS |
| TGGATTAAGATTTGAGTGAT+GGG | 0.577136 | 4_4:+80997836 | Msa0707610:exon |
| AGCAAACCTCAATTGCATCT+GGG | 0.578513 | 4_4:+80999302 | Msa0707610:CDS |
| TTTGTTGAGTCAGAACCTGA+AGG | 0.578841 | 4_4:+80999220 | Msa0707610:CDS |
| TTGAGTGATGGGTAAGGTCG+CGG | 0.581116 | 4_4:+80997847 | Msa0707610:exon |
| TGTGACATTGTCGCCAGTCG+CGG | 0.581524 | 4_4:+81001569 | Msa0707610:CDS |
| GAGTCCTAATGTTATTGCCA+AGG | 0.582560 | 4_4:+81001863 | Msa0707610:exon |
| GATACGCTGAAGGAACTGCT+TGG | 0.583463 | 4_4:+81001737 | Msa0707610:CDS |
| ACTCTAATAAAGTGGACTAA+GGG | 0.584848 | 4_4:+80999325 | Msa0707610:CDS |
| CCAAAATACCAGCAGCAGCA+AGG | 0.587377 | 4_4:-81001598 | None:intergenic |
| ATTATTTGCAGGGATGAGGA+AGG | 0.587877 | 4_4:+80998937 | Msa0707610:intron |
| AAATCTTAATCCAACAAAGT+CGG | 0.588607 | 4_4:-80997826 | None:intergenic |
| ACTTTCTCGAACTTATCATA+CGG | 0.588844 | 4_4:-80997931 | None:intergenic |
| ATTGATGACCGGTTCTTCAG+AGG | 0.592464 | 4_4:+80999077 | Msa0707610:CDS |
| GTAGGTTGGCGAAGATGTGG+TGG | 0.593075 | 4_4:+80999950 | Msa0707610:intron |
| CCTGGCAGACAAAGAGAACT+CGG | 0.593630 | 4_4:+80999256 | Msa0707610:CDS |
| GAGAAAGTGGACACGTAGCG+TGG | 0.594090 | 4_4:+80997946 | Msa0707610:CDS |
| TTAAAGGAAGATGTGATGAT+CGG | 0.599131 | 4_4:-81000514 | None:intergenic |
| GGCAGACCATGTCTGCTGTG+GGG | 0.600343 | 4_4:+81002001 | Msa0707610:three_prime_UTR |
| GGTGCCCCTGTTACCGACCA+AGG | 0.600973 | 4_4:-81002029 | None:intergenic |
| CATGCTATTCCAAAATGGCA+TGG | 0.605628 | 4_4:+81000329 | Msa0707610:CDS |
| AAGTCAGTGATAGCATTGGA+TGG | 0.608938 | 4_4:+81001671 | Msa0707610:CDS |
| TCATAATTACCTGTTCTCCA+GGG | 0.609665 | 4_4:-81000574 | None:intergenic |
| TTGCTTGGAGGATACGCTGA+AGG | 0.610887 | 4_4:+81001727 | Msa0707610:CDS |
| TCAGTGATAGCATTGGATGG+AGG | 0.611893 | 4_4:+81001674 | Msa0707610:CDS |
| GAACCGGTCATCAATTGAGG+AGG | 0.615013 | 4_4:-80999069 | None:intergenic |
| TCAGATCTGGTGTTGTGTCG+TGG | 0.616704 | 4_4:-81001350 | None:intergenic |
| TGAATGAGAGAAACAAAGTG+AGG | 0.616996 | 4_4:-80997787 | None:intergenic |
| AGTGATGGGTAAGGTCGCGG+TGG | 0.620275 | 4_4:+80997850 | Msa0707610:exon |
| CTTGTAGGTTGGCGAAGATG+TGG | 0.620866 | 4_4:+80999947 | Msa0707610:intron |
| TTTGTTGAAGATGGCCGAAG+AGG | 0.622326 | 4_4:+81000727 | Msa0707610:CDS |
| AGTTCTCTTTGTCTGCCAGG+TGG | 0.622694 | 4_4:-80999253 | None:intergenic |
| TGGTGCATGGAAGACATGTC+AGG | 0.624431 | 4_4:-81001330 | None:intergenic |
| GCTTTCTGGCATGTACTTGG+GGG | 0.629925 | 4_4:+81000688 | Msa0707610:CDS |
| GTGATGGGTAAGGTCGCGGT+GGG | 0.648560 | 4_4:+80997851 | Msa0707610:exon |
| CCGCACCACAAGAGCCGCCG+CGG | 0.648816 | 4_4:-80997906 | None:intergenic |
| CTAAATGTACACGAAGGACA+CGG | 0.650048 | 4_4:-80998996 | None:intergenic |
| ATGTTGATAATCTTCCTACT+GGG | 0.651766 | 4_4:+80998104 | Msa0707610:CDS |
| GGAAGAGACACAGTTAAGGG+TGG | 0.653081 | 4_4:+81001638 | Msa0707610:CDS |
| AATACTGTAGGTTATAAACA+TGG | 0.656730 | 4_4:+81000478 | Msa0707610:intron |
| AACCGGTCATCAATTGAGGA+GGG | 0.663823 | 4_4:-80999068 | None:intergenic |
| ATTAGCATGCTCAACGACAA+CGG | 0.666183 | 4_4:-81001777 | None:intergenic |
| TAGGTTGGCGAAGATGTGGT+GGG | 0.672008 | 4_4:+80999951 | Msa0707610:intron |
| TAGTGACTGACTGACCCAGT+AGG | 0.676585 | 4_4:-80998118 | None:intergenic |
| TAGGTTATAAACATGGAATG+GGG | 0.681790 | 4_4:+81000485 | Msa0707610:intron |
| ACAATTGGAACATTGGCTGG+AGG | 0.694331 | 4_4:+81000230 | Msa0707610:CDS |
| TTCCACCTAAATGTACACGA+AGG | 0.716522 | 4_4:-80999002 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTATTTGACTTT+TGG | + | chr4_4:80998414-80998433 | Msa0707610:intron | 10.0% |
| !! | ATAAAAATTGTAAAAGAAAT+AGG | - | chr4_4:80999660-80999679 | None:intergenic | 10.0% |
| !!! | AAACTTTTGATTTAAAAAAA+GGG | - | chr4_4:81002298-81002317 | None:intergenic | 10.0% |
| !!! | TTTTGACATATTTGAATATT+TGG | + | chr4_4:80998471-80998490 | Msa0707610:intron | 15.0% |
| !!! | TGATTTTAAATGAATTGATT+CGG | - | chr4_4:80998657-80998676 | None:intergenic | 15.0% |
| !! | TAGGAAAATAAAAACAAAAA+AGG | - | chr4_4:81001075-81001094 | None:intergenic | 15.0% |
| !!! | GTTTTAACATCTTTTATATT+AGG | + | chr4_4:81001304-81001323 | Msa0707610:intron | 15.0% |
| !! | ATTTATTTATAGTTGAAAAC+AGG | - | chr4_4:81002154-81002173 | None:intergenic | 15.0% |
| !!! | TTTTCAACTATAAATAAATC+AGG | + | chr4_4:81002155-81002174 | Msa0707610:three_prime_UTR | 15.0% |
| !!! | GAAACTTTTGATTTAAAAAA+AGG | - | chr4_4:81002299-81002318 | None:intergenic | 15.0% |
| !!! | ATTCTTATTTTTTGTGCATA+TGG | - | chr4_4:80997703-80997722 | None:intergenic | 20.0% |
| !! | TACATCATGTATAAATAAGT+GGG | - | chr4_4:80998587-80998606 | None:intergenic | 20.0% |
| !! | ATACATCATGTATAAATAAG+TGG | - | chr4_4:80998588-80998607 | None:intergenic | 20.0% |
| !! | AGGAATTTACATGATTATAA+TGG | + | chr4_4:80998732-80998751 | Msa0707610:intron | 20.0% |
| !! | GGAATTTACATGATTATAAT+GGG | + | chr4_4:80998733-80998752 | Msa0707610:intron | 20.0% |
| !! | AATGTGAAAAATTACTCAAA+GGG | - | chr4_4:80998912-80998931 | None:intergenic | 20.0% |
| !! | AGTCAATGTAAAAAGAATTA+CGG | - | chr4_4:80999368-80999387 | None:intergenic | 20.0% |
| !!! | TAATGTTTTTAGAAGTAAAC+AGG | + | chr4_4:80999856-80999875 | Msa0707610:intron | 20.0% |
| !!! | TTTTTAGTTTTAGCAATTCT+TGG | + | chr4_4:81000147-81000166 | Msa0707610:intron | 20.0% |
| !!! | AACAAGTTAGTTTTATTTAG+AGG | - | chr4_4:81000189-81000208 | None:intergenic | 20.0% |
| !! | TACAGTATTTAGAAGTAATT+TGG | - | chr4_4:81000467-81000486 | None:intergenic | 20.0% |
| !! | AAATTACTTCTAAATACTGT+AGG | + | chr4_4:81000466-81000485 | Msa0707610:intron | 20.0% |
| !!! | TAAAAGGAATTTTCAACTTA+GGG | - | chr4_4:81000778-81000797 | None:intergenic | 20.0% |
| !!! | ATAAAAGGAATTTTCAACTT+AGG | - | chr4_4:81000779-81000798 | None:intergenic | 20.0% |
| !!! | TGAAAATTCCTTTTATACTT+AGG | + | chr4_4:81000783-81000802 | Msa0707610:CDS | 20.0% |
| !! | ATGCTAATGATTCAAAAAAT+AGG | - | chr4_4:81001094-81001113 | None:intergenic | 20.0% |
| !! | CAAAACAAAAAATATCAAAC+TGG | - | chr4_4:81001908-81001927 | None:intergenic | 20.0% |
| !! | AAAAAAGGGAAAAATATAAG+AGG | - | chr4_4:81002284-81002303 | None:intergenic | 20.0% |
| !!! | TGAATTCAATCAAATTGTTT+TGG | + | chr4_4:81002375-81002394 | Msa0707610:three_prime_UTR | 20.0% |
| ! | AAATCTTAATCCAACAAAGT+CGG | - | chr4_4:80997829-80997848 | None:intergenic | 25.0% |
| !! | AAAGAAAAGTTGTTGATTAG+AGG | + | chr4_4:80998372-80998391 | Msa0707610:intron | 25.0% |
| !!! | TTTTATTTGACTTTTGGACA+TGG | + | chr4_4:80998420-80998439 | Msa0707610:intron | 25.0% |
| ! | ATTCATTTCTGATGAAAAGT+GGG | - | chr4_4:80998627-80998646 | None:intergenic | 25.0% |
| ! | AATTCATTTCTGATGAAAAG+TGG | - | chr4_4:80998628-80998647 | None:intergenic | 25.0% |
| !! | ATTTACATGATTATAATGGG+AGG | + | chr4_4:80998736-80998755 | Msa0707610:intron | 25.0% |
| ! | AACACAAAATCAAATGCTTT+GGG | - | chr4_4:80998846-80998865 | None:intergenic | 25.0% |
| ! | CAATGTGAAAAATTACTCAA+AGG | - | chr4_4:80998913-80998932 | None:intergenic | 25.0% |
| !!! | TTGATTTTGTTGTTTGTTAC+AGG | + | chr4_4:80999162-80999181 | Msa0707610:intron | 25.0% |
| !!! | TGATTTTGTTGTTTGTTACA+GGG | + | chr4_4:80999163-80999182 | Msa0707610:intron | 25.0% |
| ! | TAAATAACAACACGAAACAA+TGG | - | chr4_4:80999418-80999437 | None:intergenic | 25.0% |
| !! | TACAATTTTGAACCATTATG+AGG | - | chr4_4:80999561-80999580 | None:intergenic | 25.0% |
| ! | AGAAATAGGAAGAGAAATAT+TGG | - | chr4_4:80999646-80999665 | None:intergenic | 25.0% |
| !! | TTCTGAAAACAGAGAAAAAT+GGG | - | chr4_4:80999882-80999901 | None:intergenic | 25.0% |
| !! | TTTCTGAAAACAGAGAAAAA+TGG | - | chr4_4:80999883-80999902 | None:intergenic | 25.0% |
| ! | AAATACAGAAATCCTAAAAG+AGG | - | chr4_4:81000046-81000065 | None:intergenic | 25.0% |
| ! | ATGTAGGTTAATGATACAAT+TGG | + | chr4_4:81000215-81000234 | Msa0707610:intron | 25.0% |
| ! | TAATGATACAATTGGAACAT+TGG | + | chr4_4:81000223-81000242 | Msa0707610:CDS | 25.0% |
| ! | AATACTGTAGGTTATAAACA+TGG | + | chr4_4:81000478-81000497 | Msa0707610:intron | 25.0% |
| ! | ATCAAGATCTTGATCATATT+CGG | - | chr4_4:81000540-81000559 | None:intergenic | 25.0% |
| !!! | ATTTTTGAGAAATTGCTTTC+TGG | + | chr4_4:81000674-81000693 | Msa0707610:CDS | 25.0% |
| !! | AAAAGGAATTTTCAACTTAG+GGG | - | chr4_4:81000777-81000796 | None:intergenic | 25.0% |
| ! | AAAAGGAATCATTATTGACA+TGG | - | chr4_4:81000821-81000840 | None:intergenic | 25.0% |
| ! | ATTCATGCAATTAATAACCA+AGG | - | chr4_4:81000852-81000871 | None:intergenic | 25.0% |
| !! | CTTTTACCTAGAATCAATAA+GGG | - | chr4_4:81000969-81000988 | None:intergenic | 25.0% |
| ! | AAGCAAATTGAAGGATATAT+TGG | + | chr4_4:81001383-81001402 | Msa0707610:CDS | 25.0% |
| ! | GTATTAGATATCTGACAAAA+AGG | - | chr4_4:81001515-81001534 | None:intergenic | 25.0% |
| !!! | TCCTATAGACTTTTAACTAA+CGG | + | chr4_4:81001979-81001998 | Msa0707610:three_prime_UTR | 25.0% |
| AAGTTTAGATCTGATTCTGT+GGG | - | chr4_4:80997609-80997628 | None:intergenic | 30.0% | |
| AAAGTTTAGATCTGATTCTG+TGG | - | chr4_4:80997610-80997629 | None:intergenic | 30.0% | |
| AATAAAGTTTCCGACTTTGT+TGG | + | chr4_4:80997816-80997835 | Msa0707610:five_prime_UTR | 30.0% | |
| TTGGATTAAGATTTGAGTGA+TGG | + | chr4_4:80997835-80997854 | Msa0707610:exon | 30.0% | |
| TGGATTAAGATTTGAGTGAT+GGG | + | chr4_4:80997836-80997855 | Msa0707610:exon | 30.0% | |
| ACTTTCTCGAACTTATCATA+CGG | - | chr4_4:80997934-80997953 | None:intergenic | 30.0% | |
| !! | TATGTTGATAATCTTCCTAC+TGG | + | chr4_4:80998103-80998122 | Msa0707610:CDS | 30.0% |
| !! | ATGTTGATAATCTTCCTACT+GGG | + | chr4_4:80998104-80998123 | Msa0707610:CDS | 30.0% |
| !! | TCTTTTTCATCTTCGATTTG+TGG | + | chr4_4:80998157-80998176 | Msa0707610:intron | 30.0% |
| TACAATCACAAATCATGGAT+TGG | - | chr4_4:80998325-80998344 | None:intergenic | 30.0% | |
| TTTGTGATTGTATCTGGTAT+TGG | + | chr4_4:80998333-80998352 | Msa0707610:intron | 30.0% | |
| CAACACAAAATCAAATGCTT+TGG | - | chr4_4:80998847-80998866 | None:intergenic | 30.0% | |
| ! | GATTTTGTGTTGTGAAAGTT+TGG | + | chr4_4:80998855-80998874 | Msa0707610:intron | 30.0% |
| ACATTGTCACATTATTTGCA+GGG | + | chr4_4:80998927-80998946 | Msa0707610:intron | 30.0% | |
| TTGAAACTTCATCAAACTCT+TGG | - | chr4_4:80999047-80999066 | None:intergenic | 30.0% | |
| !! | ACTCTAATAAAGTGGACTAA+GGG | + | chr4_4:80999325-80999344 | Msa0707610:CDS | 30.0% |
| ACACAACAACAAAAAGAGAA+AGG | - | chr4_4:80999505-80999524 | None:intergenic | 30.0% | |
| TCATAGTGTTTACCTCATAA+TGG | + | chr4_4:80999546-80999565 | Msa0707610:intron | 30.0% | |
| ! | AGACAATGAAAACAGTGTTT+TGG | - | chr4_4:80999719-80999738 | None:intergenic | 30.0% |
| TCAGAAATTCTCTCATTGAA+TGG | + | chr4_4:80999896-80999915 | Msa0707610:intron | 30.0% | |
| AATTTGTCTCTGACTGAATT+TGG | + | chr4_4:81000098-81000117 | Msa0707610:intron | 30.0% | |
| !! | TTTGGAGTTACAAGGTTTTA+TGG | + | chr4_4:81000116-81000135 | Msa0707610:intron | 30.0% |
| !! | CTAACTTGTTGATGTTATGT+AGG | + | chr4_4:81000199-81000218 | Msa0707610:intron | 30.0% |
| TGGTAAGGTTATGAGTAATT+AGG | + | chr4_4:81000375-81000394 | Msa0707610:intron | 30.0% | |
| ATTTAGAAGTAATTTGGCAC+CGG | - | chr4_4:81000461-81000480 | None:intergenic | 30.0% | |
| TGTAGGTTATAAACATGGAA+TGG | + | chr4_4:81000483-81000502 | Msa0707610:intron | 30.0% | |
| GTAGGTTATAAACATGGAAT+GGG | + | chr4_4:81000484-81000503 | Msa0707610:intron | 30.0% | |
| TAGGTTATAAACATGGAATG+GGG | + | chr4_4:81000485-81000504 | Msa0707610:intron | 30.0% | |
| TTAAAGGAAGATGTGATGAT+CGG | - | chr4_4:81000517-81000536 | None:intergenic | 30.0% | |
| TCTTGATCATATTCGGTTAA+AGG | - | chr4_4:81000533-81000552 | None:intergenic | 30.0% | |
| ! | AAAGGAATTTTCAACTTAGG+GGG | - | chr4_4:81000776-81000795 | None:intergenic | 30.0% |
| TCATTATTGACATGGTTTAG+TGG | - | chr4_4:81000813-81000832 | None:intergenic | 30.0% | |
| ! | ATTCCTTTTATACTTAGCCT+TGG | + | chr4_4:81000832-81000851 | Msa0707610:intron | 30.0% |
| TAACCAAGGCTAAGTATAAA+AGG | - | chr4_4:81000838-81000857 | None:intergenic | 30.0% | |
| CAATAAGGGTGAAAATAAGA+GGG | - | chr4_4:81000955-81000974 | None:intergenic | 30.0% | |
| TCAATAAGGGTGAAAATAAG+AGG | - | chr4_4:81000956-81000975 | None:intergenic | 30.0% | |
| !!! | TTTTCACCCTTATTGATTCT+AGG | + | chr4_4:81000960-81000979 | Msa0707610:intron | 30.0% |
| ! | GCTTTTACCTAGAATCAATA+AGG | - | chr4_4:81000970-81000989 | None:intergenic | 30.0% |
| ! | ATTGATTCTAGGTAAAAGCT+TGG | + | chr4_4:81000971-81000990 | Msa0707610:intron | 30.0% |
| AAAGCTTGGATGAATGAAAA+TGG | + | chr4_4:81000985-81001004 | Msa0707610:intron | 30.0% | |
| ! | CAAAAAAGGTATGTTACTAC+TGG | - | chr4_4:81001061-81001080 | None:intergenic | 30.0% |
| ! | TTTTATCCTAACGCAAAAGT+AGG | + | chr4_4:81001119-81001138 | Msa0707610:intron | 30.0% |
| AAGATTTATGTAACTCAGCA+GGG | - | chr4_4:81001243-81001262 | None:intergenic | 30.0% | |
| CAAATTGAAGGATATATTGG+AGG | + | chr4_4:81001386-81001405 | Msa0707610:CDS | 30.0% | |
| ATGAAAGTCGTATTTCAACA+TGG | - | chr4_4:81001429-81001448 | None:intergenic | 30.0% | |
| ACTATATAGGATGATATGTG+AGG | - | chr4_4:81001453-81001472 | None:intergenic | 30.0% | |
| CTTATCCATTTGAGAGAAAA+TGG | - | chr4_4:81001477-81001496 | None:intergenic | 30.0% | |
| CTAATACATCACTAAAAACG+AGG | + | chr4_4:81001528-81001547 | Msa0707610:CDS | 30.0% | |
| ATTACCTTGGCAATAACATT+AGG | - | chr4_4:81001870-81001889 | None:intergenic | 30.0% | |
| GTTATTGCCAAGGTAATTAA+AGG | + | chr4_4:81001873-81001892 | Msa0707610:three_prime_UTR | 30.0% | |
| TTACATGCCTTTAATTACCT+TGG | - | chr4_4:81001883-81001902 | None:intergenic | 30.0% | |
| !! | CCTATAGACTTTTAACTAAC+GGG | + | chr4_4:81001980-81001999 | Msa0707610:three_prime_UTR | 30.0% |
| AACCCTGCAATCAAAATAAT+GGG | - | chr4_4:81002053-81002072 | None:intergenic | 30.0% | |
| AAACCCTGCAATCAAAATAA+TGG | - | chr4_4:81002054-81002073 | None:intergenic | 30.0% | |
| !! | GGTTTGCTTCTTCTATTTTA+TGG | + | chr4_4:81002069-81002088 | Msa0707610:three_prime_UTR | 30.0% |
| AAATGCTGTGAATCAAAAAC+GGG | - | chr4_4:81002197-81002216 | None:intergenic | 30.0% | |
| GAAATGCTGTGAATCAAAAA+CGG | - | chr4_4:81002198-81002217 | None:intergenic | 30.0% | |
| AAGGGAAAAATATAAGAGGA+TGG | - | chr4_4:81002280-81002299 | None:intergenic | 30.0% | |
| !! | TGCGCGTGTTTTAAATATAA+AGG | - | chr4_4:81002321-81002340 | None:intergenic | 30.0% |
| !!! | GTTTTGGAGAAATGAATGAA+TGG | + | chr4_4:81002391-81002410 | Msa0707610:three_prime_UTR | 30.0% |
| AAGAAAATGACAGTGCAGTT+AGG | - | chr4_4:80997678-80997697 | None:intergenic | 35.0% | |
| TGAATGAGAGAAACAAAGTG+AGG | - | chr4_4:80997790-80997809 | None:intergenic | 35.0% | |
| !! | TAAGATTTGAGTGATGGGTA+AGG | + | chr4_4:80997841-80997860 | Msa0707610:exon | 35.0% |
| GTATGATAAGTTCGAGAAAG+TGG | + | chr4_4:80997933-80997952 | Msa0707610:CDS | 35.0% | |
| !! | TGGCTATTTTGAAGGAGTTT+GGG | + | chr4_4:80997966-80997985 | Msa0707610:CDS | 35.0% |
| AACTGTCTAAGCTTTCCAAT+TGG | - | chr4_4:80998007-80998026 | None:intergenic | 35.0% | |
| AATTGGAAAGCTTAGACAGT+TGG | + | chr4_4:80998006-80998025 | Msa0707610:CDS | 35.0% | |
| CCAGATACAATCACAAATCA+TGG | - | chr4_4:80998330-80998349 | None:intergenic | 35.0% | |
| ! | CCATGATTTGTGATTGTATC+TGG | + | chr4_4:80998327-80998346 | Msa0707610:intron | 35.0% |
| GAGGCTAAAAACAATTGTAG+AGG | - | chr4_4:80998549-80998568 | None:intergenic | 35.0% | |
| ! | TGGGTTGAACAGTAAATTTG+AGG | - | chr4_4:80998568-80998587 | None:intergenic | 35.0% |
| ! | TAATCTGAGTCTGTTTCTCT+TGG | - | chr4_4:80998693-80998712 | None:intergenic | 35.0% |
| ATTCGAATGTTGTAGCACTT+AGG | + | chr4_4:80998712-80998731 | Msa0707610:intron | 35.0% | |
| !! | GAGATCACATGTTTTGTTAC+TGG | - | chr4_4:80998776-80998795 | None:intergenic | 35.0% |
| GATGATTCAGTCACATTGAA+TGG | + | chr4_4:80998808-80998827 | Msa0707610:intron | 35.0% | |
| CACATTGTCACATTATTTGC+AGG | + | chr4_4:80998926-80998945 | Msa0707610:intron | 35.0% | |
| ! | CTCTATTATGCTCTAGATCT+TGG | + | chr4_4:80998961-80998980 | Msa0707610:CDS | 35.0% |
| ! | TATTATGCTCTAGATCTTGG+TGG | + | chr4_4:80998964-80998983 | Msa0707610:CDS | 35.0% |
| CATTTAGGTGGAAAAGAGAA+AGG | + | chr4_4:80999012-80999031 | Msa0707610:CDS | 35.0% | |
| TTCAGAGGTAAGTGTGTTAT+GGG | + | chr4_4:80999092-80999111 | Msa0707610:intron | 35.0% | |
| !! | GACTCTAATAAAGTGGACTA+AGG | + | chr4_4:80999324-80999343 | Msa0707610:CDS | 35.0% |
| GAGAGACTCATTTAAGTATC+TGG | - | chr4_4:80999462-80999481 | None:intergenic | 35.0% | |
| GAGGTAAACACTATGATATC+TGG | - | chr4_4:80999542-80999561 | None:intergenic | 35.0% | |
| GAGTCTTTCATCTCATTGTT+AGG | + | chr4_4:80999794-80999813 | Msa0707610:intron | 35.0% | |
| ACCAAGTCCTTGGAAAAAAT+TGG | + | chr4_4:80999981-81000000 | Msa0707610:CDS | 35.0% | |
| ! | TGACTGAATTTGGAGTTACA+AGG | + | chr4_4:81000108-81000127 | Msa0707610:intron | 35.0% |
| !! | TATCTCCTGATTTTGGCATA+AGG | - | chr4_4:81000355-81000374 | None:intergenic | 35.0% |
| TATGCCAAAATCAGGAGATA+TGG | + | chr4_4:81000355-81000374 | Msa0707610:CDS | 35.0% | |
| ! | CTTACCATATCTCCTGATTT+TGG | - | chr4_4:81000362-81000381 | None:intergenic | 35.0% |
| CAAAATCAGGAGATATGGTA+AGG | + | chr4_4:81000360-81000379 | Msa0707610:intron | 35.0% | |
| TTTAGAAGTAATTTGGCACC+GGG | - | chr4_4:81000460-81000479 | None:intergenic | 35.0% | |
| TCATAATTACCTGTTCTCCA+GGG | - | chr4_4:81000577-81000596 | None:intergenic | 35.0% | |
| ATCATAATTACCTGTTCTCC+AGG | - | chr4_4:81000578-81000597 | None:intergenic | 35.0% | |
| AAGGATGCTACAAATTCACA+TGG | - | chr4_4:81000631-81000650 | None:intergenic | 35.0% | |
| TCTCAAAAATCTGTGAACGA+TGG | - | chr4_4:81000664-81000683 | None:intergenic | 35.0% | |
| GTGGCATACCTAAGTATAAA+AGG | - | chr4_4:81000794-81000813 | None:intergenic | 35.0% | |
| !! | GATCATTTTAGTATCAGCCT+TGG | + | chr4_4:81000927-81000946 | Msa0707610:intron | 35.0% |
| AATAAGGAGTTCTGCTTGTA+TGG | - | chr4_4:81001189-81001208 | None:intergenic | 35.0% | |
| AGGGTGAAGGAATGAAAATA+AGG | - | chr4_4:81001205-81001224 | None:intergenic | 35.0% | |
| AGGGTAAAACAGGTGATAAA+GGG | - | chr4_4:81001224-81001243 | None:intergenic | 35.0% | |
| GAAGATTTATGTAACTCAGC+AGG | - | chr4_4:81001244-81001263 | None:intergenic | 35.0% | |
| GAGAGAAAATGGCACTATAT+AGG | - | chr4_4:81001466-81001485 | None:intergenic | 35.0% | |
| !!! | TAGTGCCATTTTCTCTCAAA+TGG | + | chr4_4:81001469-81001488 | Msa0707610:intron | 35.0% |
| AAAAACGAGGAAGATTGTTG+TGG | + | chr4_4:81001541-81001560 | Msa0707610:CDS | 35.0% | |
| ! | CACTAAATTCAGAGTTTGCT+TGG | + | chr4_4:81001712-81001731 | Msa0707610:CDS | 35.0% |
| ! | TAAATTCAGAGTTTGCTTGG+AGG | + | chr4_4:81001715-81001734 | Msa0707610:CDS | 35.0% |
| AGCTACTATGCCTTAGTTAT+TGG | + | chr4_4:81001956-81001975 | Msa0707610:three_prime_UTR | 35.0% | |
| GTCTATAGGACCAATAACTA+AGG | - | chr4_4:81001969-81001988 | None:intergenic | 35.0% | |
| CCCGTTAGTTAAAAGTCTAT+AGG | - | chr4_4:81001983-81002002 | None:intergenic | 35.0% | |
| !!! | CACCCATTATTTTGATTGCA+GGG | + | chr4_4:81002048-81002067 | Msa0707610:three_prime_UTR | 35.0% |
| ! | TTTGAGTGTATCCTGTTTTG+CGG | + | chr4_4:81002121-81002140 | Msa0707610:three_prime_UTR | 35.0% |
| ! | TCTGCTATTGTTGTTAGTAC+TGG | + | chr4_4:81002246-81002265 | Msa0707610:three_prime_UTR | 35.0% |
| AGATCTGATTCTGTGGGATT+GGG | - | chr4_4:80997603-80997622 | None:intergenic | 40.0% | |
| TAGATCTGATTCTGTGGGAT+TGG | - | chr4_4:80997604-80997623 | None:intergenic | 40.0% | |
| !! | GTGGCTATTTTGAAGGAGTT+TGG | + | chr4_4:80997965-80997984 | Msa0707610:CDS | 40.0% |
| !! | GGCTATTTTGAAGGAGTTTG+GGG | + | chr4_4:80997967-80997986 | Msa0707610:CDS | 40.0% |
| ! | GAAAAGTGTGAGACACCAAT+TGG | + | chr4_4:80997989-80998008 | Msa0707610:CDS | 40.0% |
| !! | AAGTGGGTTGAACGTATGTT+TGG | - | chr4_4:80998611-80998630 | None:intergenic | 40.0% |
| GTGACTGAATCATCAACAAG+TGG | - | chr4_4:80998802-80998821 | None:intergenic | 40.0% | |
| TCACATTATTTGCAGGGATG+AGG | + | chr4_4:80998933-80998952 | Msa0707610:intron | 40.0% | |
| ATTATTTGCAGGGATGAGGA+AGG | + | chr4_4:80998937-80998956 | Msa0707610:intron | 40.0% | |
| CTAAATGTACACGAAGGACA+CGG | - | chr4_4:80998999-80999018 | None:intergenic | 40.0% | |
| TTCCACCTAAATGTACACGA+AGG | - | chr4_4:80999005-80999024 | None:intergenic | 40.0% | |
| CTTCAGAGGTAAGTGTGTTA+TGG | + | chr4_4:80999091-80999110 | Msa0707610:intron | 40.0% | |
| TTTGTTGAGTCAGAACCTGA+AGG | + | chr4_4:80999220-80999239 | Msa0707610:CDS | 40.0% | |
| ! | CAATTGAGGTTTGCTTCACA+GGG | - | chr4_4:80999297-80999316 | None:intergenic | 40.0% |
| AAGCAAACCTCAATTGCATC+TGG | + | chr4_4:80999301-80999320 | Msa0707610:CDS | 40.0% | |
| AGCAAACCTCAATTGCATCT+GGG | + | chr4_4:80999302-80999321 | Msa0707610:CDS | 40.0% | |
| ! | CATCTGGGACTCTAATAAAG+TGG | + | chr4_4:80999317-80999336 | Msa0707610:CDS | 40.0% |
| TTGAATGGTCATCTGACAGT+TGG | + | chr4_4:80999911-80999930 | Msa0707610:intron | 40.0% | |
| TCTATCACTTGCTTGTAGGT+TGG | + | chr4_4:80999936-80999955 | Msa0707610:intron | 40.0% | |
| !!! | GCCAATTTTTTCCAAGGACT+TGG | - | chr4_4:80999985-81000004 | None:intergenic | 40.0% |
| !!! | ATCCAGGCCAATTTTTTCCA+AGG | - | chr4_4:80999991-81000010 | None:intergenic | 40.0% |
| ! | CAGTCTCATTCTCCTCTTTT+AGG | + | chr4_4:81000031-81000050 | Msa0707610:intron | 40.0% |
| GATACAATTGGAACATTGGC+TGG | + | chr4_4:81000227-81000246 | Msa0707610:CDS | 40.0% | |
| CATGCTATTCCAAAATGGCA+TGG | + | chr4_4:81000329-81000348 | Msa0707610:CDS | 40.0% | |
| TGTCTTACGATGCTACTAAG+AGG | + | chr4_4:81000420-81000439 | Msa0707610:intron | 40.0% | |
| CAAAAATCTGTGAACGATGG+TGG | - | chr4_4:81000661-81000680 | None:intergenic | 40.0% | |
| ! | ATTGCTTTCTGGCATGTACT+TGG | + | chr4_4:81000685-81000704 | Msa0707610:CDS | 40.0% |
| ! | TTGCTTTCTGGCATGTACTT+GGG | + | chr4_4:81000686-81000705 | Msa0707610:CDS | 40.0% |
| TGTACTTGGGGGAAATTGTA+CGG | + | chr4_4:81000699-81000718 | Msa0707610:CDS | 40.0% | |
| TCCGAAAAATTCAGCCTCTT+CGG | - | chr4_4:81000744-81000763 | None:intergenic | 40.0% | |
| TCTGTTCAGACTTCTTCATG+TGG | + | chr4_4:81000905-81000924 | Msa0707610:intron | 40.0% | |
| GTGAAAATAAGAGGGAACCA+AGG | - | chr4_4:81000947-81000966 | None:intergenic | 40.0% | |
| !! | TCTATGCCTACTTTTGCGTT+AGG | - | chr4_4:81001128-81001147 | None:intergenic | 40.0% |
| AAACAGGTGATAAAGGGTGA+AGG | - | chr4_4:81001218-81001237 | None:intergenic | 40.0% | |
| CAGGGTAAAACAGGTGATAA+AGG | - | chr4_4:81001225-81001244 | None:intergenic | 40.0% | |
| AGAGGTTGGAAGCAAATTGA+AGG | + | chr4_4:81001374-81001393 | Msa0707610:CDS | 40.0% | |
| TTGGGAATCCTGAAGAAACT+AGG | + | chr4_4:81001617-81001636 | Msa0707610:CDS | 40.0% | |
| TGTCTCTTCCTAGTTTCTTC+AGG | - | chr4_4:81001628-81001647 | None:intergenic | 40.0% | |
| ACTAGGAAGAGACACAGTTA+AGG | + | chr4_4:81001634-81001653 | Msa0707610:CDS | 40.0% | |
| CTAGGAAGAGACACAGTTAA+GGG | + | chr4_4:81001635-81001654 | Msa0707610:CDS | 40.0% | |
| GCAAAAGTCAGTGATAGCAT+TGG | + | chr4_4:81001667-81001686 | Msa0707610:CDS | 40.0% | |
| ! | AAGTCAGTGATAGCATTGGA+TGG | + | chr4_4:81001671-81001690 | Msa0707610:CDS | 40.0% |
| ATTAGCATGCTCAACGACAA+CGG | - | chr4_4:81001780-81001799 | None:intergenic | 40.0% | |
| AGCTTCTCACTCTCAGTATT+TGG | + | chr4_4:81001832-81001851 | Msa0707610:CDS | 40.0% | |
| GCTTCTCACTCTCAGTATTT+GGG | + | chr4_4:81001833-81001852 | Msa0707610:CDS | 40.0% | |
| GAGTCCTAATGTTATTGCCA+AGG | + | chr4_4:81001863-81001882 | Msa0707610:exon | 40.0% | |
| !!! | GCACCCATTATTTTGATTGC+AGG | + | chr4_4:81002047-81002066 | Msa0707610:three_prime_UTR | 40.0% |
| TGACAGTGCAGTTAGGAGTT+AGG | - | chr4_4:80997671-80997690 | None:intergenic | 45.0% | |
| !! | ACGTAGCGTGGCTATTTTGA+AGG | + | chr4_4:80997958-80997977 | Msa0707610:CDS | 45.0% |
| TAGACAGTTGGCTGATGCTA+TGG | + | chr4_4:80998018-80998037 | Msa0707610:CDS | 45.0% | |
| ATGGATGTTGAGATGCATGC+TGG | + | chr4_4:80998037-80998056 | Msa0707610:CDS | 45.0% | |
| CGTGTCCTTCGTGTACATTT+AGG | + | chr4_4:80998997-80999016 | Msa0707610:CDS | 45.0% | |
| GTCCTTCGTGTACATTTAGG+TGG | + | chr4_4:80999000-80999019 | Msa0707610:CDS | 45.0% | |
| ! | ATCCCTCCTCAATTGATGAC+CGG | + | chr4_4:80999066-80999085 | Msa0707610:CDS | 45.0% |
| AACCGGTCATCAATTGAGGA+GGG | - | chr4_4:80999071-80999090 | None:intergenic | 45.0% | |
| GAAGAACCGGTCATCAATTG+AGG | - | chr4_4:80999075-80999094 | None:intergenic | 45.0% | |
| ! | ATTGATGACCGGTTCTTCAG+AGG | + | chr4_4:80999077-80999096 | Msa0707610:CDS | 45.0% |
| ! | CACACTTACCTCTGAAGAAC+CGG | - | chr4_4:80999088-80999107 | None:intergenic | 45.0% |
| ! | GCAATTGAGGTTTGCTTCAC+AGG | - | chr4_4:80999298-80999317 | None:intergenic | 45.0% |
| TAGAGTCCCAGATGCAATTG+AGG | - | chr4_4:80999311-80999330 | None:intergenic | 45.0% | |
| GGTCTCTATCACTTGCTTGT+AGG | + | chr4_4:80999932-80999951 | Msa0707610:intron | 45.0% | |
| GTCCTTGGAAAAAATTGGCC+TGG | + | chr4_4:80999986-81000005 | Msa0707610:CDS | 45.0% | |
| ! | ACAATTGGAACATTGGCTGG+AGG | + | chr4_4:81000230-81000249 | Msa0707610:CDS | 45.0% |
| TGGAGGCAGATTCTACAATC+AGG | + | chr4_4:81000247-81000266 | Msa0707610:CDS | 45.0% | |
| GTCATTGCTGCTGTGATTCT+CGG | + | chr4_4:81000272-81000291 | Msa0707610:CDS | 45.0% | |
| ACGCGCATGCTATTCCAAAA+TGG | + | chr4_4:81000324-81000343 | Msa0707610:CDS | 45.0% | |
| !! | CATGGCCTTATGCCAAAATC+AGG | + | chr4_4:81000347-81000366 | Msa0707610:CDS | 45.0% |
| TTACGATGCTACTAAGAGGC+AGG | + | chr4_4:81000424-81000443 | Msa0707610:intron | 45.0% | |
| GATGCTGAAAGCTTAAACCC+TGG | + | chr4_4:81000557-81000576 | Msa0707610:CDS | 45.0% | |
| AAGCTTAAACCCTGGAGAAC+AGG | + | chr4_4:81000565-81000584 | Msa0707610:CDS | 45.0% | |
| !! | AATCTGTGAACGATGGTGGA+AGG | - | chr4_4:81000657-81000676 | None:intergenic | 45.0% |
| ! | TGCTTTCTGGCATGTACTTG+GGG | + | chr4_4:81000687-81000706 | Msa0707610:CDS | 45.0% |
| !! | ACGGAGAGCTTTGTTGAAGA+TGG | + | chr4_4:81000718-81000737 | Msa0707610:CDS | 45.0% |
| TTTGTTGAAGATGGCCGAAG+AGG | + | chr4_4:81000727-81000746 | Msa0707610:CDS | 45.0% | |
| ! | GCCGAAGAGGCTGAATTTTT+CGG | + | chr4_4:81000740-81000759 | Msa0707610:CDS | 45.0% |
| GTAACTCAGCAGGGTAAAAC+AGG | - | chr4_4:81001234-81001253 | None:intergenic | 45.0% | |
| CACAACACCAGATCTGAAAG+AGG | + | chr4_4:81001356-81001375 | Msa0707610:CDS | 45.0% | |
| ACACCAGATCTGAAAGAGGT+TGG | + | chr4_4:81001360-81001379 | Msa0707610:CDS | 45.0% | |
| CTTCCAACCTCTTTCAGATC+TGG | - | chr4_4:81001366-81001385 | None:intergenic | 45.0% | |
| ! | CTTGCTGCTGCTGGTATTTT+GGG | + | chr4_4:81001599-81001618 | Msa0707610:CDS | 45.0% |
| ! | TCAGTGATAGCATTGGATGG+AGG | + | chr4_4:81001674-81001693 | Msa0707610:CDS | 45.0% |
| ! | CAGTGATAGCATTGGATGGA+GGG | + | chr4_4:81001675-81001694 | Msa0707610:CDS | 45.0% |
| GTCGTTGAGCATGCTAATGA+TGG | + | chr4_4:81001782-81001801 | Msa0707610:CDS | 45.0% | |
| GAGCATGCTAATGATGGTTC+AGG | + | chr4_4:81001788-81001807 | Msa0707610:CDS | 45.0% | |
| GCTAATGATGGTTCAGGCAT+TGG | + | chr4_4:81001794-81001813 | Msa0707610:CDS | 45.0% | |
| !! | ATTAATCAAATTATATTTAT+TGG | + | chr4_4:81000596-81000615 | Msa0707610:intron | 5.0% |
| !! | TTGAGTGATGGGTAAGGTCG+CGG | + | chr4_4:80997847-80997866 | Msa0707610:exon | 50.0% |
| !! | CATGCTGGTCTTGCATCTGA+AGG | + | chr4_4:80998052-80998071 | Msa0707610:CDS | 50.0% |
| TAGTGACTGACTGACCCAGT+AGG | - | chr4_4:80998121-80998140 | None:intergenic | 50.0% | |
| GAACCGGTCATCAATTGAGG+AGG | - | chr4_4:80999072-80999091 | None:intergenic | 50.0% | |
| GGTGGAGGATGAAAACCTTC+AGG | - | chr4_4:80999238-80999257 | None:intergenic | 50.0% | |
| ! | GAAGGTTTTCATCCTCCACC+TGG | + | chr4_4:80999238-80999257 | Msa0707610:CDS | 50.0% |
| AGTTCTCTTTGTCTGCCAGG+TGG | - | chr4_4:80999256-80999275 | None:intergenic | 50.0% | |
| CCTGGCAGACAAAGAGAACT+CGG | + | chr4_4:80999256-80999275 | Msa0707610:CDS | 50.0% | |
| ! | CTTGTAGGTTGGCGAAGATG+TGG | + | chr4_4:80999947-80999966 | Msa0707610:intron | 50.0% |
| ! | TAGGTTGGCGAAGATGTGGT+GGG | + | chr4_4:80999951-80999970 | Msa0707610:intron | 50.0% |
| GGGAGAACTAACCAAGTCCT+TGG | + | chr4_4:80999971-80999990 | Msa0707610:CDS | 50.0% | |
| CTGCTGTGATTCTCGGTACT+GGG | + | chr4_4:81000279-81000298 | Msa0707610:CDS | 50.0% | |
| !! | GGCATAAGGCCATGCCATTT+TGG | - | chr4_4:81000341-81000360 | None:intergenic | 50.0% |
| !! | GAACGATGGTGGAAGGATCA+AGG | - | chr4_4:81000650-81000669 | None:intergenic | 50.0% |
| ! | GCTTTCTGGCATGTACTTGG+GGG | + | chr4_4:81000688-81000707 | Msa0707610:CDS | 50.0% |
| TGGTGCATGGAAGACATGTC+AGG | - | chr4_4:81001333-81001352 | None:intergenic | 50.0% | |
| !! | TCAGATCTGGTGTTGTGTCG+TGG | - | chr4_4:81001353-81001372 | None:intergenic | 50.0% |
| CCAAAATACCAGCAGCAGCA+AGG | - | chr4_4:81001601-81001620 | None:intergenic | 50.0% | |
| ! | CCTTGCTGCTGCTGGTATTT+TGG | + | chr4_4:81001598-81001617 | Msa0707610:CDS | 50.0% |
| GGAAGAGACACAGTTAAGGG+TGG | + | chr4_4:81001638-81001657 | Msa0707610:CDS | 50.0% | |
| TTGCTTGGAGGATACGCTGA+AGG | + | chr4_4:81001727-81001746 | Msa0707610:CDS | 50.0% | |
| GATACGCTGAAGGAACTGCT+TGG | + | chr4_4:81001737-81001756 | Msa0707610:CDS | 50.0% | |
| GAAGGAACTGCTTGGAGATG+AGG | + | chr4_4:81001745-81001764 | Msa0707610:CDS | 50.0% | |
| CAGGCTACATTCCGCAAAAC+AGG | - | chr4_4:81002135-81002154 | None:intergenic | 50.0% | |
| GAGAAAGTGGACACGTAGCG+TGG | + | chr4_4:80997946-80997965 | Msa0707610:CDS | 55.0% | |
| !! | GCTGGTCTTGCATCTGAAGG+TGG | + | chr4_4:80998055-80998074 | Msa0707610:CDS | 55.0% |
| TCTCTTTGTCTGCCAGGTGG+AGG | - | chr4_4:80999253-80999272 | None:intergenic | 55.0% | |
| CCGAGTTCTCTTTGTCTGCC+AGG | - | chr4_4:80999259-80999278 | None:intergenic | 55.0% | |
| ! | GTAGGTTGGCGAAGATGTGG+TGG | + | chr4_4:80999950-80999969 | Msa0707610:intron | 55.0% |
| GAGCTGCAACACGCATATCC+AGG | - | chr4_4:81000007-81000026 | None:intergenic | 55.0% | |
| GCTGCTGTGATTCTCGGTAC+TGG | + | chr4_4:81000278-81000297 | Msa0707610:CDS | 55.0% | |
| GAGGCAGGTCATGACTAACC+CGG | + | chr4_4:81000439-81000458 | Msa0707610:intron | 55.0% | |
| !! | TGGTGTTGTGTCGTGGTGCA+TGG | - | chr4_4:81001346-81001365 | None:intergenic | 55.0% |
| TGTGACATTGTCGCCAGTCG+CGG | + | chr4_4:81001569-81001588 | Msa0707610:CDS | 55.0% | |
| GTGCTCCTTGGTCGGTAACA+GGG | + | chr4_4:81002024-81002043 | Msa0707610:three_prime_UTR | 55.0% | |
| TGCTCCTTGGTCGGTAACAG+GGG | + | chr4_4:81002025-81002044 | Msa0707610:three_prime_UTR | 55.0% | |
| !! | AGTGATGGGTAAGGTCGCGG+TGG | + | chr4_4:80997850-80997869 | Msa0707610:exon | 60.0% |
| !! | GTGATGGGTAAGGTCGCGGT+GGG | + | chr4_4:80997851-80997870 | Msa0707610:exon | 60.0% |
| GGGCAGACCATGTCTGCTGT+GGG | + | chr4_4:81002000-81002019 | Msa0707610:three_prime_UTR | 60.0% | |
| GGCAGACCATGTCTGCTGTG+GGG | + | chr4_4:81002001-81002020 | Msa0707610:three_prime_UTR | 60.0% | |
| GCAGACCATGTCTGCTGTGG+GGG | + | chr4_4:81002002-81002021 | Msa0707610:three_prime_UTR | 60.0% | |
| GGTGCTCCTTGGTCGGTAAC+AGG | + | chr4_4:81002023-81002042 | Msa0707610:three_prime_UTR | 60.0% | |
| TAAGGTCGCGGTGGGAGCTG+CGG | + | chr4_4:80997859-80997878 | Msa0707610:CDS | 65.0% | |
| AAGAGCCGCCGCGGCACAAA+CGG | - | chr4_4:80997900-80997919 | None:intergenic | 65.0% | |
| CGGGCAGACCATGTCTGCTG+TGG | + | chr4_4:81001999-81002018 | Msa0707610:three_prime_UTR | 65.0% | |
| GAGCACCCCCACAGCAGACA+TGG | - | chr4_4:81002010-81002029 | None:intergenic | 65.0% | |
| !! | TCTGCTGTGGGGGTGCTCCT+TGG | + | chr4_4:81002012-81002031 | Msa0707610:three_prime_UTR | 65.0% |
| !! | CTGTGGGGGTGCTCCTTGGT+CGG | + | chr4_4:81002016-81002035 | Msa0707610:three_prime_UTR | 65.0% |
| GGTGCCCCTGTTACCGACCA+AGG | - | chr4_4:81002032-81002051 | None:intergenic | 65.0% | |
| TTGTGCCGCGGCGGCTCTTG+TGG | + | chr4_4:80997901-80997920 | Msa0707610:CDS | 70.0% | |
| AGCAAGGCGTGCACCGCGAC+TGG | - | chr4_4:81001585-81001604 | None:intergenic | 70.0% | |
| GGTGCACGCCTTGCTGCTGC+TGG | + | chr4_4:81001590-81001609 | Msa0707610:CDS | 70.0% | |
| TGCCGCCGCCGTTTGTGCCG+CGG | + | chr4_4:80997889-80997908 | Msa0707610:CDS | 75.0% | |
| AGCCGCCGCGGCACAAACGG+CGG | - | chr4_4:80997897-80997916 | None:intergenic | 75.0% | |
| CCGCACCACAAGAGCCGCCG+CGG | - | chr4_4:80997909-80997928 | None:intergenic | 75.0% | |
| CCGCGGCGGCTCTTGTGGTG+CGG | + | chr4_4:80997906-80997925 | Msa0707610:CDS | 75.0% | |
| ! | CGCCGCGGCACAAACGGCGG+CGG | - | chr4_4:80997894-80997913 | None:intergenic | 80.0% |
| ! | CGCCGCCGTTTGTGCCGCGG+CGG | + | chr4_4:80997892-80997911 | Msa0707610:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80997580 | 81002452 | 80997580 | ID=Msa0707610;Name=Msa0707610 |
| chr4_4 | mRNA | 80997580 | 81002452 | 80997580 | ID=Msa0707610-mRNA-1;Parent=Msa0707610;Name=Msa0707610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=274|1|1|1|1|1|9|581|498 |
| chr4_4 | exon | 80997580 | 80998125 | 80997580 | ID=Msa0707610-mRNA-1:exon:26417;Parent=Msa0707610-mRNA-1 |
| chr4_4 | exon | 80998948 | 80999098 | 80998948 | ID=Msa0707610-mRNA-1:exon:26418;Parent=Msa0707610-mRNA-1 |
| chr4_4 | exon | 80999184 | 80999366 | 80999184 | ID=Msa0707610-mRNA-1:exon:26419;Parent=Msa0707610-mRNA-1 |
| chr4_4 | exon | 80999954 | 81000028 | 80999954 | ID=Msa0707610-mRNA-1:exon:26420;Parent=Msa0707610-mRNA-1 |
| chr4_4 | exon | 81000221 | 81000376 | 81000221 | ID=Msa0707610-mRNA-1:exon:26421;Parent=Msa0707610-mRNA-1 |
| chr4_4 | exon | 81000488 | 81000586 | 81000488 | ID=Msa0707610-mRNA-1:exon:26422;Parent=Msa0707610-mRNA-1 |
| chr4_4 | exon | 81000674 | 81000804 | 81000674 | ID=Msa0707610-mRNA-1:exon:26423;Parent=Msa0707610-mRNA-1 |
| chr4_4 | exon | 81001326 | 81001407 | 81001326 | ID=Msa0707610-mRNA-1:exon:26424;Parent=Msa0707610-mRNA-1 |
| chr4_4 | exon | 81001524 | 81002452 | 81001524 | ID=Msa0707610-mRNA-1:exon:26425;Parent=Msa0707610-mRNA-1 |
| chr4_4 | five_prime_UTR | 80997580 | 80997853 | 80997580 | ID=Msa0707610-mRNA-1:five_prime_utr;Parent=Msa0707610-mRNA-1 |
| chr4_4 | CDS | 80997854 | 80998125 | 80997854 | ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1 |
| chr4_4 | CDS | 80998948 | 80999098 | 80998948 | ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1 |
| chr4_4 | CDS | 80999184 | 80999366 | 80999184 | ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1 |
| chr4_4 | CDS | 80999954 | 81000028 | 80999954 | ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1 |
| chr4_4 | CDS | 81000221 | 81000376 | 81000221 | ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1 |
| chr4_4 | CDS | 81000488 | 81000586 | 81000488 | ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1 |
| chr4_4 | CDS | 81000674 | 81000804 | 81000674 | ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1 |
| chr4_4 | CDS | 81001326 | 81001407 | 81001326 | ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1 |
| chr4_4 | CDS | 81001524 | 81001871 | 81001524 | ID=Msa0707610-mRNA-1:cds;Parent=Msa0707610-mRNA-1 |
| chr4_4 | three_prime_UTR | 81001872 | 81002452 | 81001872 | ID=Msa0707610-mRNA-1:three_prime_utr;Parent=Msa0707610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
