Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786890 | XP_003617376.1 | 91.628 | 215 | 18 | 0 | 1 | 215 | 1 | 215 | 1.33e-143 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786890 | sp|O80852|GSTF9_ARATH | 61.751 | 217 | 80 | 2 | 1 | 216 | 1 | 215 | 1.09e-98 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786890 | G7K3B0 | 91.628 | 215 | 18 | 0 | 1 | 215 | 1 | 215 | 6.37e-144 | 409 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0786890 | 0.813480 | 2.505249e-51 | -8.615850e-47 |
| Msa0006820 | Msa0786890 | 0.805222 | 1.481476e-49 | -8.615850e-47 |
| Msa0008850 | Msa0786890 | 0.833264 | 5.892290e-56 | -8.615850e-47 |
| Msa0017120 | Msa0786890 | 0.814417 | 1.557070e-51 | -8.615850e-47 |
| Msa0038310 | Msa0786890 | 0.808812 | 2.577043e-50 | -8.615850e-47 |
| Msa0047470 | Msa0786890 | 0.825595 | 4.303908e-54 | -8.615850e-47 |
| Msa0050500 | Msa0786890 | 0.802309 | 5.963539e-49 | -8.615850e-47 |
| Msa0057740 | Msa0786890 | 0.846016 | 2.829455e-59 | -8.615850e-47 |
| Msa0065390 | Msa0786890 | 0.833000 | 6.857252e-56 | -8.615850e-47 |
| Msa0083160 | Msa0786890 | 0.815466 | 9.110722e-52 | -8.615850e-47 |
| Msa0100250 | Msa0786890 | 0.815435 | 9.259096e-52 | -8.615850e-47 |
| Msa0100910 | Msa0786890 | 0.809265 | 2.060738e-50 | -8.615850e-47 |
| Msa0103060 | Msa0786890 | 0.843879 | 1.067849e-58 | -8.615850e-47 |
| Msa0110710 | Msa0786890 | 0.836907 | 7.106637e-57 | -8.615850e-47 |
| Msa0605230 | Msa0786890 | 0.824188 | 9.240547e-54 | -8.615850e-47 |
| Msa0607280 | Msa0786890 | 0.809341 | 1.985315e-50 | -8.615850e-47 |
| Msa0614230 | Msa0786890 | 0.811124 | 8.191062e-51 | -8.615850e-47 |
| Msa0617370 | Msa0786890 | 0.811596 | 6.468212e-51 | -8.615850e-47 |
| Msa0620750 | Msa0786890 | 0.808392 | 3.168154e-50 | -8.615850e-47 |
| Msa0635990 | Msa0786890 | 0.804325 | 2.280810e-49 | -8.615850e-47 |
| Msa0638710 | Msa0786890 | 0.830603 | 2.676631e-55 | -8.615850e-47 |
| Msa0646390 | Msa0786890 | 0.812511 | 4.087097e-51 | -8.615850e-47 |
| Msa0653710 | Msa0786890 | 0.817150 | 3.829037e-52 | -8.615850e-47 |
| Msa0654060 | Msa0786890 | 0.812692 | 3.731113e-51 | -8.615850e-47 |
| Msa0660820 | Msa0786890 | 0.806827 | 6.807298e-50 | -8.615850e-47 |
| Msa0690350 | Msa0786890 | 0.817694 | 2.887533e-52 | -8.615850e-47 |
| Msa0690720 | Msa0786890 | 0.831506 | 1.606314e-55 | -8.615850e-47 |
| Msa0698900 | Msa0786890 | 0.803241 | 3.828526e-49 | -8.615850e-47 |
| Msa0719340 | Msa0786890 | 0.808910 | 2.455144e-50 | -8.615850e-47 |
| Msa0724050 | Msa0786890 | 0.810251 | 1.265089e-50 | -8.615850e-47 |
| Msa0726610 | Msa0786890 | 0.815246 | 1.019864e-51 | -8.615850e-47 |
| Msa0736930 | Msa0786890 | 0.811917 | 5.508866e-51 | -8.615850e-47 |
| Msa0739610 | Msa0786890 | 0.826182 | 3.121302e-54 | -8.615850e-47 |
| Msa0763350 | Msa0786890 | 0.802038 | 6.782069e-49 | -8.615850e-47 |
| Msa0763880 | Msa0786890 | 0.827456 | 1.548785e-54 | -8.615850e-47 |
| Msa0763910 | Msa0786890 | 0.836767 | 7.714114e-57 | -8.615850e-47 |
| Msa0771960 | Msa0786890 | 0.808455 | 3.071715e-50 | -8.615850e-47 |
| Msa0772150 | Msa0786890 | 0.831577 | 1.542598e-55 | -8.615850e-47 |
| Msa0773260 | Msa0786890 | 0.806178 | 9.332992e-50 | -8.615850e-47 |
| Msa0773290 | Msa0786890 | 0.831513 | 1.599448e-55 | -8.615850e-47 |
| Msa0782030 | Msa0786890 | 0.816284 | 5.987842e-52 | -8.615850e-47 |
| Msa0783260 | Msa0786890 | 0.805386 | 1.369086e-49 | -8.615850e-47 |
| Msa0783270 | Msa0786890 | 0.820874 | 5.447228e-53 | -8.615850e-47 |
| Msa0786890 | Msa0787720 | 0.811324 | 7.409663e-51 | -8.615850e-47 |
| Msa0786890 | Msa0793060 | 0.833247 | 5.949729e-56 | -8.615850e-47 |
| Msa0786890 | Msa0822370 | 0.879469 | 1.214867e-69 | -8.615850e-47 |
| Msa0786890 | Msa0830720 | 0.803240 | 3.831528e-49 | -8.615850e-47 |
| Msa0786890 | Msa0844100 | 0.845966 | 2.920505e-59 | -8.615850e-47 |
| Msa0786890 | Msa0861800 | 0.861885 | 7.489959e-64 | -8.615850e-47 |
| Msa0786890 | Msa0887070 | 0.818073 | 2.370266e-52 | -8.615850e-47 |
| Msa0786890 | Msa0934830 | 0.817743 | 2.814759e-52 | -8.615850e-47 |
| Msa0786890 | Msa0950410 | 0.831289 | 1.816147e-55 | -8.615850e-47 |
| Msa0786890 | Msa0950620 | 0.812058 | 5.130735e-51 | -8.615850e-47 |
| Msa0786890 | Msa0971860 | 0.848685 | 5.236170e-60 | -8.615850e-47 |
| Msa0786890 | Msa0978000 | 0.832271 | 1.039441e-55 | -8.615850e-47 |
| Msa0786890 | Msa1001780 | 0.801155 | 1.028803e-48 | -8.615850e-47 |
| Msa0786890 | Msa1016110 | 0.814770 | 1.301052e-51 | -8.615850e-47 |
| Msa0786890 | Msa1033160 | 0.818581 | 1.819204e-52 | -8.615850e-47 |
| Msa0786890 | Msa1038320 | 0.834933 | 2.249608e-56 | -8.615850e-47 |
| Msa0786890 | Msa1043870 | 0.826933 | 2.066841e-54 | -8.615850e-47 |
| Msa0786890 | Msa1044040 | 0.829249 | 5.720757e-55 | -8.615850e-47 |
| Msa0786890 | Msa1055360 | 0.808722 | 2.693589e-50 | -8.615850e-47 |
| Msa0786890 | Msa1079610 | 0.828198 | 1.027117e-54 | -8.615850e-47 |
| Msa0786890 | Msa1102180 | 0.842542 | 2.426195e-58 | -8.615850e-47 |
| Msa0786890 | Msa1118140 | 0.805008 | 1.642746e-49 | -8.615850e-47 |
| Msa0786890 | Msa1124440 | 0.833360 | 5.576581e-56 | -8.615850e-47 |
| Msa0786890 | Msa1130650 | 0.804209 | 2.410953e-49 | -8.615850e-47 |
| Msa0786890 | Msa1138600 | 0.836751 | 7.789734e-57 | -8.615850e-47 |
| Msa0786890 | Msa1140010 | 0.813243 | 2.825440e-51 | -8.615850e-47 |
| Msa0786890 | Msa1157920 | 0.806981 | 6.315788e-50 | -8.615850e-47 |
| Msa0786890 | Msa1161160 | 0.803903 | 2.791692e-49 | -8.615850e-47 |
| Msa0786890 | Msa1166180 | 0.805724 | 1.162518e-49 | -8.615850e-47 |
| Msa0786890 | Msa1166280 | 0.805078 | 1.588052e-49 | -8.615850e-47 |
| Msa0786890 | Msa1168130 | 0.851319 | 9.591560e-61 | -8.615850e-47 |
| Msa0786890 | Msa1186580 | 0.821022 | 5.035422e-53 | -8.615850e-47 |
| Msa0786890 | Msa1187810 | 0.802475 | 5.513285e-49 | -8.615850e-47 |
| Msa0786890 | Msa1211300 | 0.809027 | 2.317881e-50 | -8.615850e-47 |
| Msa0786890 | Msa1211390 | 0.829169 | 5.982572e-55 | -8.615850e-47 |
| Msa0786890 | Msa1215210 | 0.808209 | 3.464964e-50 | -8.615850e-47 |
| Msa0786890 | Msa1219780 | -0.815458 | 9.152142e-52 | -8.615850e-47 |
| Msa0786890 | Msa1220740 | 0.827786 | 1.290315e-54 | -8.615850e-47 |
| Msa0786890 | Msa1246420 | 0.815439 | 9.240220e-52 | -8.615850e-47 |
| Msa0786890 | Msa1272130 | 0.803993 | 2.674117e-49 | -8.615850e-47 |
| Msa0786890 | Msa1282210 | 0.818603 | 1.797928e-52 | -8.615850e-47 |
| Msa0786890 | Msa1287160 | 0.800390 | 1.473909e-48 | -8.615850e-47 |
| Msa0786890 | Msa1287340 | 0.810511 | 1.111776e-50 | -8.615850e-47 |
| Msa0786890 | Msa1306190 | 0.800526 | 1.383230e-48 | -8.615850e-47 |
| Msa0786890 | Msa1306200 | 0.818287 | 2.120319e-52 | -8.615850e-47 |
| Msa0786890 | Msa1309910 | 0.813781 | 2.151491e-51 | -8.615850e-47 |
| Msa0786890 | Msa1322420 | 0.822033 | 2.941296e-53 | -8.615850e-47 |
| Msa0786890 | Msa1334650 | 0.823956 | 1.047828e-53 | -8.615850e-47 |
| Msa0786890 | Msa1335720 | 0.824219 | 9.085574e-54 | -8.615850e-47 |
| Msa0786890 | Msa1349360 | 0.831668 | 1.464682e-55 | -8.615850e-47 |
| Msa0786890 | Msa1360380 | 0.801941 | 7.100516e-49 | -8.615850e-47 |
| Msa0786890 | Msa1381130 | 0.809643 | 1.709929e-50 | -8.615850e-47 |
| Msa0786890 | Msa1406230 | 0.821980 | 3.026086e-53 | -8.615850e-47 |
| Msa0786890 | Msa1407210 | -0.807774 | 4.288279e-50 | -8.615850e-47 |
| Msa0786890 | Msa1415270 | 0.841283 | 5.219938e-58 | -8.615850e-47 |
| Msa0786890 | Msa1435470 | 0.830530 | 2.789142e-55 | -8.615850e-47 |
| Msa0786890 | Msa1435910 | 0.813801 | 2.129778e-51 | -8.615850e-47 |
| Msa0786890 | Msa1440180 | 0.813846 | 2.081149e-51 | -8.615850e-47 |
| Msa0786890 | Msa1449740 | 0.813137 | 2.980656e-51 | -8.615850e-47 |
| Msa0786890 | Msa1450020 | 0.802659 | 5.050139e-49 | -8.615850e-47 |
| Msa0786890 | Msa1458920 | 0.824616 | 7.330740e-54 | -8.615850e-47 |
| Msa0132620 | Msa0786890 | 0.801651 | 8.143949e-49 | -8.615850e-47 |
| Msa0141550 | Msa0786890 | 0.807969 | 3.898711e-50 | -8.615850e-47 |
| Msa0141670 | Msa0786890 | 0.809353 | 1.973000e-50 | -8.615850e-47 |
| Msa0146470 | Msa0786890 | 0.814147 | 1.786391e-51 | -8.615850e-47 |
| Msa0185390 | Msa0786890 | 0.815368 | 9.583588e-52 | -8.615850e-47 |
| Msa0210880 | Msa0786890 | 0.809496 | 1.838503e-50 | -8.615850e-47 |
| Msa0222070 | Msa0786890 | 0.829324 | 5.486886e-55 | -8.615850e-47 |
| Msa0222120 | Msa0786890 | 0.827543 | 1.475909e-54 | -8.615850e-47 |
| Msa0227290 | Msa0786890 | 0.826725 | 2.317093e-54 | -8.615850e-47 |
| Msa0369780 | Msa0786890 | 0.808235 | 3.421798e-50 | -8.615850e-47 |
| Msa0380430 | Msa0786890 | 0.823197 | 1.577060e-53 | -8.615850e-47 |
| Msa0414070 | Msa0786890 | 0.802189 | 6.312106e-49 | -8.615850e-47 |
| Msa0421800 | Msa0786890 | 0.836633 | 8.345700e-57 | -8.615850e-47 |
| Msa0423110 | Msa0786890 | 0.824746 | 6.830502e-54 | -8.615850e-47 |
| Msa0431520 | Msa0786890 | 0.828850 | 7.148173e-55 | -8.615850e-47 |
| Msa0431830 | Msa0786890 | 0.822618 | 2.151251e-53 | -8.615850e-47 |
| Msa0456480 | Msa0786890 | 0.829285 | 5.606873e-55 | -8.615850e-47 |
| Msa0467800 | Msa0786890 | 0.813358 | 2.664780e-51 | -8.615850e-47 |
| Msa0467880 | Msa0786890 | 0.816630 | 5.007927e-52 | -8.615850e-47 |
| Msa0473450 | Msa0786890 | 0.815017 | 1.146371e-51 | -8.615850e-47 |
| Msa0259330 | Msa0786890 | 0.803279 | 3.759903e-49 | -8.615850e-47 |
| Msa0263620 | Msa0786890 | 0.829020 | 6.501339e-55 | -8.615850e-47 |
| Msa0284870 | Msa0786890 | 0.819036 | 1.434108e-52 | -8.615850e-47 |
| Msa0301460 | Msa0786890 | 0.819338 | 1.223868e-52 | -8.615850e-47 |
| Msa0323630 | Msa0786890 | 0.801168 | 1.022528e-48 | -8.615850e-47 |
| Msa0336270 | Msa0786890 | 0.805629 | 1.217065e-49 | -8.615850e-47 |
| Msa0502910 | Msa0786890 | 0.800319 | 1.523984e-48 | -8.615850e-47 |
| Msa0505660 | Msa0786890 | 0.801227 | 9.944257e-49 | -8.615850e-47 |
| Msa0509540 | Msa0786890 | 0.815162 | 1.064916e-51 | -8.615850e-47 |
| Msa0514260 | Msa0786890 | 0.835976 | 1.226521e-56 | -8.615850e-47 |
| Msa0534420 | Msa0786890 | 0.806530 | 7.864593e-50 | -8.615850e-47 |
| Msa0542040 | Msa0786890 | 0.834617 | 2.702097e-56 | -8.615850e-47 |
| Msa0553520 | Msa0786890 | 0.823088 | 1.671565e-53 | -8.615850e-47 |
| Msa0558890 | Msa0786890 | 0.820881 | 5.426783e-53 | -8.615850e-47 |
| Msa0577230 | Msa0786890 | 0.800284 | 1.548755e-48 | -8.615850e-47 |
| Msa0577870 | Msa0786890 | 0.811975 | 5.351041e-51 | -8.615850e-47 |
| Msa0595780 | Msa0786890 | 0.808401 | 3.153942e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786890 | MtrunA17_Chr5g0442741 | 91.628 | 215 | 18 | 0 | 1 | 215 | 1 | 215 | 1.23e-147 | 409 |
| Msa0786890 | MtrunA17_Chr5g0442751 | 88.889 | 216 | 24 | 0 | 1 | 216 | 1 | 216 | 1.29e-143 | 399 |
| Msa0786890 | MtrunA17_Chr3g0095781 | 68.664 | 217 | 65 | 2 | 1 | 216 | 1 | 215 | 9.37e-109 | 311 |
| Msa0786890 | MtrunA17_Chr3g0095821 | 70.000 | 170 | 48 | 2 | 47 | 215 | 1 | 168 | 1.40e-85 | 250 |
| Msa0786890 | MtrunA17_Chr3g0109891 | 53.241 | 216 | 95 | 4 | 1 | 213 | 1 | 213 | 3.69e-76 | 228 |
| Msa0786890 | MtrunA17_Chr1g0157211 | 43.836 | 219 | 116 | 4 | 3 | 215 | 5 | 222 | 1.24e-57 | 181 |
| Msa0786890 | MtrunA17_Chr1g0195811 | 42.925 | 212 | 116 | 4 | 2 | 211 | 3 | 211 | 1.68e-56 | 178 |
| Msa0786890 | MtrunA17_Chr1g0195831 | 42.180 | 211 | 118 | 4 | 1 | 209 | 1 | 209 | 9.66e-55 | 174 |
| Msa0786890 | MtrunA17_Chr1g0195821 | 43.396 | 212 | 115 | 4 | 2 | 211 | 3 | 211 | 7.80e-54 | 171 |
| Msa0786890 | MtrunA17_Chr1g0189001 | 80.000 | 40 | 8 | 0 | 167 | 206 | 1 | 40 | 1.72e-17 | 73.2 |
| Msa0786890 | MtrunA17_Chr1g0198101 | 48.485 | 66 | 33 | 1 | 146 | 211 | 1 | 65 | 8.96e-16 | 69.3 |
| Msa0786890 | MtrunA17_Chr3g0095811 | 66.667 | 48 | 16 | 0 | 1 | 48 | 1 | 48 | 1.68e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786890 | AT2G30860.1 | 61.751 | 217 | 80 | 2 | 1 | 216 | 1 | 215 | 1.10e-99 | 288 |
| Msa0786890 | AT2G30870.1 | 57.604 | 217 | 89 | 2 | 1 | 216 | 1 | 215 | 6.55e-89 | 261 |
| Msa0786890 | AT3G03190.1 | 48.357 | 213 | 106 | 3 | 1 | 211 | 1 | 211 | 8.24e-68 | 207 |
| Msa0786890 | AT2G30860.2 | 60.645 | 155 | 58 | 2 | 1 | 154 | 1 | 153 | 1.09e-64 | 197 |
| Msa0786890 | AT5G17220.1 | 44.811 | 212 | 115 | 2 | 1 | 211 | 1 | 211 | 1.54e-62 | 194 |
| Msa0786890 | AT3G62760.1 | 44.286 | 210 | 113 | 4 | 1 | 208 | 1 | 208 | 2.84e-58 | 183 |
| Msa0786890 | AT2G47730.2 | 42.180 | 211 | 118 | 4 | 5 | 213 | 54 | 262 | 1.64e-55 | 177 |
| Msa0786890 | AT2G47730.1 | 42.180 | 211 | 118 | 4 | 5 | 213 | 54 | 262 | 1.64e-55 | 177 |
| Msa0786890 | AT1G02930.2 | 42.308 | 208 | 116 | 4 | 3 | 209 | 4 | 208 | 3.14e-52 | 167 |
| Msa0786890 | AT1G02930.1 | 42.308 | 208 | 116 | 4 | 3 | 209 | 4 | 208 | 3.14e-52 | 167 |
| Msa0786890 | AT1G02920.1 | 42.788 | 208 | 116 | 3 | 3 | 209 | 4 | 209 | 2.21e-51 | 165 |
| Msa0786890 | AT2G02930.1 | 42.180 | 211 | 116 | 4 | 3 | 209 | 4 | 212 | 2.00e-50 | 163 |
| Msa0786890 | AT4G02520.1 | 40.952 | 210 | 118 | 4 | 3 | 208 | 4 | 211 | 4.99e-50 | 162 |
| Msa0786890 | AT1G02950.3 | 40.686 | 204 | 117 | 4 | 4 | 205 | 26 | 227 | 3.02e-46 | 153 |
| Msa0786890 | AT1G02950.1 | 40.686 | 204 | 117 | 4 | 4 | 205 | 26 | 227 | 3.02e-46 | 153 |
| Msa0786890 | AT1G02950.2 | 40.686 | 204 | 117 | 4 | 4 | 205 | 28 | 229 | 3.12e-46 | 153 |
| Msa0786890 | AT1G02950.5 | 40.686 | 204 | 117 | 4 | 4 | 205 | 38 | 239 | 4.02e-46 | 153 |
| Msa0786890 | AT1G02940.4 | 38.095 | 210 | 126 | 4 | 4 | 211 | 40 | 247 | 2.27e-45 | 151 |
| Msa0786890 | AT1G02940.1 | 38.095 | 210 | 126 | 4 | 4 | 211 | 40 | 247 | 2.27e-45 | 151 |
| Msa0786890 | AT1G02940.3 | 38.095 | 210 | 126 | 4 | 4 | 211 | 53 | 260 | 3.18e-45 | 151 |
| Msa0786890 | AT1G02940.2 | 38.095 | 210 | 126 | 4 | 4 | 211 | 65 | 272 | 3.66e-45 | 152 |
| Msa0786890 | AT1G49860.1 | 39.614 | 207 | 118 | 4 | 9 | 209 | 9 | 214 | 1.46e-42 | 144 |
| Msa0786890 | AT1G02950.4 | 38.194 | 144 | 86 | 3 | 63 | 205 | 60 | 201 | 7.38e-26 | 100 |
| Msa0786890 | AT2G02390.2 | 38.806 | 67 | 41 | 0 | 11 | 77 | 18 | 84 | 6.77e-11 | 59.7 |
Find 89 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAGTCACCTTCCATTTA+TGG | 0.066681 | 5_2:-72494783 | Msa0786890:CDS |
| GATGGAGACTATACCCTTTA+TGG | 0.175031 | 5_2:-72495494 | Msa0786890:intron |
| GGATTACGTTGTTAACAATA+TGG | 0.214666 | 5_2:-72494762 | Msa0786890:CDS |
| CTCCAACTTAAGTGTATCTT+TGG | 0.225699 | 5_2:-72494640 | Msa0786890:exon |
| TCACCCTCCAAGACATTAAT+AGG | 0.249295 | 5_2:+72495695 | None:intergenic |
| TTCAACACAACTAAACTAAA+AGG | 0.299149 | 5_2:+72494326 | None:intergenic |
| GTTCACAATCTGCAGCCTTT+TGG | 0.299664 | 5_2:-72495536 | Msa0786890:intron |
| TCACTCTCTTCAATCACCTT+TGG | 0.309741 | 5_2:+72494893 | None:intergenic |
| TTAACAACGTAATCCATAAA+TGG | 0.311970 | 5_2:+72494770 | None:intergenic |
| GCTATCAAAGAGCAAGTATT+TGG | 0.324415 | 5_2:-72494831 | Msa0786890:CDS |
| GGGGAAGGATTATTTGATAA+AGG | 0.330935 | 5_2:-72494741 | Msa0786890:CDS |
| ACACCTTCACTACCATGTTT+TGG | 0.337665 | 5_2:+72495792 | None:intergenic |
| TGGTAAATGTTACACTTTAG+AGG | 0.340766 | 5_2:-72494572 | Msa0786890:three_prime_UTR |
| CCGTTTGGCTGAGGCACAAT+GGG | 0.352357 | 5_2:+72495763 | None:intergenic |
| TCTTCAATCACCTTTGGATC+TGG | 0.357222 | 5_2:+72494899 | None:intergenic |
| CCCATTGTGCCTCAGCCAAA+CGG | 0.385018 | 5_2:-72495763 | Msa0786890:CDS |
| TGAGAAGAAAATCGAATTTG+AGG | 0.392525 | 5_2:-72495723 | Msa0786890:CDS |
| GGTTGTCCCTATTAATGTCT+TGG | 0.396323 | 5_2:-72495702 | Msa0786890:CDS |
| ACCTGAGTACCTCAAATTAC+AGG | 0.397815 | 5_2:-72495663 | Msa0786890:intron |
| AATGCTTAAACAAGAGATAA+GGG | 0.400123 | 5_2:+72495825 | None:intergenic |
| ACTGTTCCTGTTATTAAAGA+TGG | 0.400215 | 5_2:-72495512 | Msa0786890:CDS |
| ATCTATTTGTGCAGAATCTC+GGG | 0.401584 | 5_2:-72495101 | Msa0786890:intron |
| CATCTATTTGTGCAGAATCT+CGG | 0.405162 | 5_2:-72495102 | Msa0786890:intron |
| TAGTCTCCATCTTTAATAAC+AGG | 0.407930 | 5_2:+72495506 | None:intergenic |
| GATTACGTTGTTAACAATAT+GGG | 0.426681 | 5_2:-72494761 | Msa0786890:CDS |
| TTGATCGGTGGGAATCCTGC+TGG | 0.433665 | 5_2:+72495898 | None:intergenic |
| TGAAGAGAGTGAAGCAAAGT+TGG | 0.434591 | 5_2:-72494882 | Msa0786890:CDS |
| AGGATAGAAATAACAAATAG+TGG | 0.435542 | 5_2:+72494346 | None:intergenic |
| AGGAAAGACAATAGAAGATA+AGG | 0.442942 | 5_2:-72495026 | Msa0786890:CDS |
| TCCAACTTAAGTGTATCTTT+GGG | 0.444791 | 5_2:-72494639 | Msa0786890:exon |
| TCATGGATTTAAGAATATAG+TGG | 0.451156 | 5_2:-72494398 | Msa0786890:intron |
| CCATTGTGCCTCAGCCAAAC+GGG | 0.459696 | 5_2:-72495762 | Msa0786890:CDS |
| ACCCAAAGATACACTTAAGT+TGG | 0.471466 | 5_2:+72494638 | None:intergenic |
| GGAAAGACAATAGAAGATAA+GGG | 0.475501 | 5_2:-72495025 | Msa0786890:CDS |
| GTGAATTAACCTGTAATTTG+AGG | 0.477315 | 5_2:+72495654 | None:intergenic |
| AAATGCTTAAACAAGAGATA+AGG | 0.478373 | 5_2:+72495824 | None:intergenic |
| TGTCCCTATTAATGTCTTGG+AGG | 0.483266 | 5_2:-72495699 | Msa0786890:CDS |
| ACCTGTAATTTGAGGTACTC+AGG | 0.483901 | 5_2:+72495662 | None:intergenic |
| TGCCTCAGCCAAACGGGTGT+TGG | 0.485298 | 5_2:-72495756 | Msa0786890:CDS |
| AAGACAAACCAACACCCGTT+TGG | 0.490853 | 5_2:+72495748 | None:intergenic |
| GTGCCGTCAGCTAGTAGTGC+AGG | 0.501569 | 5_2:+72494923 | None:intergenic |
| TGCAGGAAACAAACATTGAC+AGG | 0.509817 | 5_2:+72494940 | None:intergenic |
| AATGAAGTGAACTAACTAAG+AGG | 0.510075 | 5_2:-72495859 | Msa0786890:five_prime_UTR |
| TCTCAAGGAGTTGAGTTACT+AGG | 0.511988 | 5_2:-72495046 | Msa0786890:CDS |
| TCAAGAACTTTGTTCCATGA+TGG | 0.514235 | 5_2:+72494674 | None:intergenic |
| AGGATTATTTGATAAAGGAT+AGG | 0.514814 | 5_2:-72494736 | Msa0786890:CDS |
| CACCCTCCAAGACATTAATA+GGG | 0.516622 | 5_2:+72495696 | None:intergenic |
| GCCCTACGTGGAGTCCCAGC+AGG | 0.517126 | 5_2:-72495913 | Msa0786890:five_prime_UTR |
| ATAGGAAGTATGTTAGTGCT+TGG | 0.518602 | 5_2:-72494718 | Msa0786890:CDS |
| GGAAGTATGTTAGTGCTTGG+TGG | 0.519087 | 5_2:-72494715 | Msa0786890:CDS |
| CAAAGATACACTTAAGTTGG+AGG | 0.523637 | 5_2:+72494641 | None:intergenic |
| CCCGTTTGGCTGAGGCACAA+TGG | 0.523893 | 5_2:+72495762 | None:intergenic |
| GTCCCTATTAATGTCTTGGA+GGG | 0.525222 | 5_2:-72495698 | Msa0786890:CDS |
| ATAACAGGAACAGTTCCAAA+AGG | 0.526229 | 5_2:+72495521 | None:intergenic |
| CGTTGTTAACAATATGGGGA+AGG | 0.527650 | 5_2:-72494756 | Msa0786890:CDS |
| AATAATTTAAAGAATAAATG+TGG | 0.531746 | 5_2:-72494474 | Msa0786890:three_prime_UTR |
| AACATGGTAGTGAAGGTGTA+TGG | 0.533400 | 5_2:-72495788 | Msa0786890:CDS |
| TGATCGGTGGGAATCCTGCT+GGG | 0.536079 | 5_2:+72495899 | None:intergenic |
| AATAGAAGATAAGGGTCTTG+TGG | 0.538217 | 5_2:-72495017 | Msa0786890:CDS |
| GAAGAGAGTGAAGCAAAGTT+GGG | 0.538644 | 5_2:-72494881 | Msa0786890:CDS |
| TTATAGTCACTGAGGTTGAT+CGG | 0.539834 | 5_2:+72495883 | None:intergenic |
| TCAAAGAGCAAGTATTTGGC+TGG | 0.546465 | 5_2:-72494827 | Msa0786890:CDS |
| CAGGTCAAATTGTATGCTGA+TGG | 0.554286 | 5_2:+72494959 | None:intergenic |
| TCCTGCTGGGACTCCACGTA+GGG | 0.560334 | 5_2:+72495912 | None:intergenic |
| AACCAACACCCGTTTGGCTG+AGG | 0.565490 | 5_2:+72495754 | None:intergenic |
| TTTCCTGCACTACTAGCTGA+CGG | 0.566461 | 5_2:-72494926 | Msa0786890:CDS |
| AGTCACTGAGGTTGATCGGT+GGG | 0.577854 | 5_2:+72495887 | None:intergenic |
| AGACCAAAACATGGTAGTGA+AGG | 0.579436 | 5_2:-72495795 | Msa0786890:exon |
| TGTTGAACATTTATGAAGAG+AGG | 0.582845 | 5_2:-72494853 | Msa0786890:CDS |
| ATTACGTTGTTAACAATATG+GGG | 0.584797 | 5_2:-72494760 | Msa0786890:CDS |
| CAACGTAATCCATAAATGGA+AGG | 0.591331 | 5_2:+72494774 | None:intergenic |
| ATAAGGGTCTTGTGGAACAA+TGG | 0.598827 | 5_2:-72495009 | Msa0786890:CDS |
| GAGTGAAGCAAAGTTGGGCA+AGG | 0.616935 | 5_2:-72494876 | Msa0786890:CDS |
| TGACGGCACTCCAGATCCAA+AGG | 0.632803 | 5_2:-72494909 | Msa0786890:CDS |
| CTTCATTCTTATAGTCACTG+AGG | 0.635978 | 5_2:+72495875 | None:intergenic |
| ATGCTTAAACAAGAGATAAG+GGG | 0.636485 | 5_2:+72495826 | None:intergenic |
| TCACCGCTTCTTGCCCTACG+TGG | 0.637143 | 5_2:-72495925 | Msa0786890:five_prime_UTR |
| ATATAAGTAGTAGACCATCA+TGG | 0.637766 | 5_2:-72494688 | Msa0786890:CDS |
| ATAGTGATTTACCACGATTG+TGG | 0.641924 | 5_2:-72494592 | Msa0786890:three_prime_UTR |
| ACTCCACGTAGGGCAAGAAG+CGG | 0.656720 | 5_2:+72495922 | None:intergenic |
| AGGTCAAATTGTATGCTGAT+GGG | 0.663491 | 5_2:+72494960 | None:intergenic |
| ATCCTGCTGGGACTCCACGT+AGG | 0.663629 | 5_2:+72495911 | None:intergenic |
| TGTAACATTTACCACAATCG+TGG | 0.668935 | 5_2:+72494581 | None:intergenic |
| TAGTCACTGAGGTTGATCGG+TGG | 0.670660 | 5_2:+72495886 | None:intergenic |
| TCAAATTGTATGCTGATGGG+TGG | 0.678075 | 5_2:+72494963 | None:intergenic |
| GAAGGTGACTCATATCAGCA+AGG | 0.682286 | 5_2:+72494792 | None:intergenic |
| TTTAGAGGTTAACAAAATCG+CGG | 0.701173 | 5_2:-72494557 | Msa0786890:three_prime_UTR |
| TTTCAATAGAGACCAAAACA+TGG | 0.712012 | 5_2:-72495804 | Msa0786890:exon |
| CGTTTGGCTGAGGCACAATG+GGG | 0.722715 | 5_2:+72495764 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTTAAAGAATAAATG+TGG | - | chr5_2:72495790-72495809 | Msa0786890:exon | 10.0% |
| !! | AATAATTTAAAGAATAAATG+TGG | - | chr5_2:72495790-72495809 | Msa0786890:exon | 10.0% |
| !! | TCTTATCTACATATTTGATA+TGG | - | chr5_2:72494841-72494860 | Msa0786890:CDS | 20.0% |
| !! | AAACATATAACCAATAGTAT+TGG | + | chr5_2:72495006-72495025 | None:intergenic | 20.0% |
| !! | TTGGTTATATGTTTAAATCT+TGG | - | chr5_2:72495012-72495031 | Msa0786890:CDS | 20.0% |
| !!! | TGTGATTTTATGAAACTTAT+CGG | - | chr5_2:72495736-72495755 | Msa0786890:CDS | 20.0% |
| !! | AAAAAGGTTAAAAAGGTTAA+AGG | - | chr5_2:72495838-72495857 | Msa0786890:five_prime_UTR | 20.0% |
| !! | AAAAGGTTAAAAAGGTTAAA+GGG | - | chr5_2:72495839-72495858 | Msa0786890:five_prime_UTR | 20.0% |
| !!! | GGTTTTTACTTTTTTTAAAG+TGG | - | chr5_2:72495887-72495906 | Msa0786890:five_prime_UTR | 20.0% |
| !! | TCTTATCTACATATTTGATA+TGG | - | chr5_2:72494841-72494860 | Msa0786890:CDS | 20.0% |
| !! | AAACATATAACCAATAGTAT+TGG | + | chr5_2:72495006-72495025 | None:intergenic | 20.0% |
| !! | TTGGTTATATGTTTAAATCT+TGG | - | chr5_2:72495012-72495031 | Msa0786890:CDS | 20.0% |
| !!! | TGTGATTTTATGAAACTTAT+CGG | - | chr5_2:72495736-72495755 | Msa0786890:CDS | 20.0% |
| !! | AAAAAGGTTAAAAAGGTTAA+AGG | - | chr5_2:72495838-72495857 | Msa0786890:five_prime_UTR | 20.0% |
| !! | AAAAGGTTAAAAAGGTTAAA+GGG | - | chr5_2:72495839-72495858 | Msa0786890:five_prime_UTR | 20.0% |
| !!! | GGTTTTTACTTTTTTTAAAG+TGG | - | chr5_2:72495887-72495906 | Msa0786890:five_prime_UTR | 20.0% |
| ! | AATGCTTAAACAAGAGATAA+GGG | + | chr5_2:72494442-72494461 | None:intergenic | 25.0% |
| ! | AAATGCTTAAACAAGAGATA+AGG | + | chr5_2:72494443-72494462 | None:intergenic | 25.0% |
| !!! | CCTTTTTAGCATATTAAACA+AGG | + | chr5_2:72494656-72494675 | None:intergenic | 25.0% |
| !! | CCTTGTTTAATATGCTAAAA+AGG | - | chr5_2:72494653-72494672 | Msa0786890:CDS | 25.0% |
| !!! | CAAGATGTTTTAACCATAAA+GGG | + | chr5_2:72494786-72494805 | None:intergenic | 25.0% |
| !!! | TCAAGATGTTTTAACCATAA+AGG | + | chr5_2:72494787-72494806 | None:intergenic | 25.0% |
| !!! | GGTTTTATGTCTCAAAATTT+TGG | - | chr5_2:72494890-72494909 | Msa0786890:CDS | 25.0% |
| !!! | AGACCTCAATTTTTTTTTTG+AGG | - | chr5_2:72494922-72494941 | Msa0786890:CDS | 25.0% |
| !!! | GACCTCAATTTTTTTTTTGA+GGG | - | chr5_2:72494923-72494942 | Msa0786890:CDS | 25.0% |
| ! | TCAACAAGATAATACACTAA+TGG | + | chr5_2:72495130-72495149 | None:intergenic | 25.0% |
| ! | TTAACAACGTAATCCATAAA+TGG | + | chr5_2:72495497-72495516 | None:intergenic | 25.0% |
| ! | GATTACGTTGTTAACAATAT+GGG | - | chr5_2:72495503-72495522 | Msa0786890:CDS | 25.0% |
| ! | ATTACGTTGTTAACAATATG+GGG | - | chr5_2:72495504-72495523 | Msa0786890:CDS | 25.0% |
| ! | AGGATTATTTGATAAAGGAT+AGG | - | chr5_2:72495528-72495547 | Msa0786890:intron | 25.0% |
| !!! | CAAACATACACTTAGTTTTT+AGG | - | chr5_2:72495764-72495783 | Msa0786890:CDS | 25.0% |
| !!! | TGGTTCTAAAAAGGTTAAAA+AGG | - | chr5_2:72495831-72495850 | Msa0786890:five_prime_UTR | 25.0% |
| ! | TCATGGATTTAAGAATATAG+TGG | - | chr5_2:72495866-72495885 | Msa0786890:five_prime_UTR | 25.0% |
| ! | AGGATAGAAATAACAAATAG+TGG | + | chr5_2:72495921-72495940 | None:intergenic | 25.0% |
| ! | TTCAACACAACTAAACTAAA+AGG | + | chr5_2:72495941-72495960 | None:intergenic | 25.0% |
| ! | AATGCTTAAACAAGAGATAA+GGG | + | chr5_2:72494442-72494461 | None:intergenic | 25.0% |
| ! | AAATGCTTAAACAAGAGATA+AGG | + | chr5_2:72494443-72494462 | None:intergenic | 25.0% |
| !!! | CCTTTTTAGCATATTAAACA+AGG | + | chr5_2:72494656-72494675 | None:intergenic | 25.0% |
| !! | CCTTGTTTAATATGCTAAAA+AGG | - | chr5_2:72494653-72494672 | Msa0786890:CDS | 25.0% |
| !!! | CAAGATGTTTTAACCATAAA+GGG | + | chr5_2:72494786-72494805 | None:intergenic | 25.0% |
| !!! | TCAAGATGTTTTAACCATAA+AGG | + | chr5_2:72494787-72494806 | None:intergenic | 25.0% |
| !!! | GGTTTTATGTCTCAAAATTT+TGG | - | chr5_2:72494890-72494909 | Msa0786890:CDS | 25.0% |
| !!! | AGACCTCAATTTTTTTTTTG+AGG | - | chr5_2:72494922-72494941 | Msa0786890:CDS | 25.0% |
| !!! | GACCTCAATTTTTTTTTTGA+GGG | - | chr5_2:72494923-72494942 | Msa0786890:CDS | 25.0% |
| ! | TCAACAAGATAATACACTAA+TGG | + | chr5_2:72495130-72495149 | None:intergenic | 25.0% |
| ! | TTAACAACGTAATCCATAAA+TGG | + | chr5_2:72495497-72495516 | None:intergenic | 25.0% |
| ! | GATTACGTTGTTAACAATAT+GGG | - | chr5_2:72495503-72495522 | Msa0786890:CDS | 25.0% |
| ! | ATTACGTTGTTAACAATATG+GGG | - | chr5_2:72495504-72495523 | Msa0786890:CDS | 25.0% |
| ! | AGGATTATTTGATAAAGGAT+AGG | - | chr5_2:72495528-72495547 | Msa0786890:intron | 25.0% |
| !!! | CAAACATACACTTAGTTTTT+AGG | - | chr5_2:72495764-72495783 | Msa0786890:CDS | 25.0% |
| !!! | TGGTTCTAAAAAGGTTAAAA+AGG | - | chr5_2:72495831-72495850 | Msa0786890:five_prime_UTR | 25.0% |
| ! | TCATGGATTTAAGAATATAG+TGG | - | chr5_2:72495866-72495885 | Msa0786890:five_prime_UTR | 25.0% |
| ! | AGGATAGAAATAACAAATAG+TGG | + | chr5_2:72495921-72495940 | None:intergenic | 25.0% |
| ! | TTCAACACAACTAAACTAAA+AGG | + | chr5_2:72495941-72495960 | None:intergenic | 25.0% |
| AATGAAGTGAACTAACTAAG+AGG | - | chr5_2:72494405-72494424 | Msa0786890:intron | 30.0% | |
| ATGCTTAAACAAGAGATAAG+GGG | + | chr5_2:72494441-72494460 | None:intergenic | 30.0% | |
| TTTCAATAGAGACCAAAACA+TGG | - | chr5_2:72494460-72494479 | Msa0786890:three_prime_UTR | 30.0% | |
| TGAGAAGAAAATCGAATTTG+AGG | - | chr5_2:72494541-72494560 | Msa0786890:three_prime_UTR | 30.0% | |
| GTGAATTAACCTGTAATTTG+AGG | + | chr5_2:72494613-72494632 | None:intergenic | 30.0% | |
| ACTGTTCCTGTTATTAAAGA+TGG | - | chr5_2:72494752-72494771 | Msa0786890:CDS | 30.0% | |
| TAGTCTCCATCTTTAATAAC+AGG | + | chr5_2:72494761-72494780 | None:intergenic | 30.0% | |
| ! | TAAGTAGAAAAGCATGACAT+GGG | + | chr5_2:72494811-72494830 | None:intergenic | 30.0% |
| ! | ATAAGTAGAAAAGCATGACA+TGG | + | chr5_2:72494812-72494831 | None:intergenic | 30.0% |
| GCTTGTAAACACTTTAAACA+AGG | - | chr5_2:72494869-72494888 | Msa0786890:CDS | 30.0% | |
| CACCCTCAAAAAAAAAATTG+AGG | + | chr5_2:72494928-72494947 | None:intergenic | 30.0% | |
| !!! | CTCAATTTTTTTTTTGAGGG+TGG | - | chr5_2:72494926-72494945 | Msa0786890:CDS | 30.0% |
| ! | CATATAACCAATAGTATTGG+AGG | + | chr5_2:72495003-72495022 | None:intergenic | 30.0% |
| GCTGAAAAATATAGATCTCA+AGG | - | chr5_2:72495203-72495222 | Msa0786890:intron | 30.0% | |
| AGGAAAGACAATAGAAGATA+AGG | - | chr5_2:72495238-72495257 | Msa0786890:intron | 30.0% | |
| GGAAAGACAATAGAAGATAA+GGG | - | chr5_2:72495239-72495258 | Msa0786890:intron | 30.0% | |
| TGTTGAACATTTATGAAGAG+AGG | - | chr5_2:72495411-72495430 | Msa0786890:intron | 30.0% | |
| GGATTACGTTGTTAACAATA+TGG | - | chr5_2:72495502-72495521 | Msa0786890:CDS | 30.0% | |
| ATATAAGTAGTAGACCATCA+TGG | - | chr5_2:72495576-72495595 | Msa0786890:intron | 30.0% | |
| TCCAACTTAAGTGTATCTTT+GGG | - | chr5_2:72495625-72495644 | Msa0786890:intron | 30.0% | |
| TGGTAAATGTTACACTTTAG+AGG | - | chr5_2:72495692-72495711 | Msa0786890:CDS | 30.0% | |
| TTTAGAGGTTAACAAAATCG+CGG | - | chr5_2:72495707-72495726 | Msa0786890:CDS | 30.0% | |
| !!! | GGTTTTAAAAAGTTTCAACG+TGG | - | chr5_2:72495811-72495830 | Msa0786890:five_prime_UTR | 30.0% |
| AATGAAGTGAACTAACTAAG+AGG | - | chr5_2:72494405-72494424 | Msa0786890:intron | 30.0% | |
| ATGCTTAAACAAGAGATAAG+GGG | + | chr5_2:72494441-72494460 | None:intergenic | 30.0% | |
| TTTCAATAGAGACCAAAACA+TGG | - | chr5_2:72494460-72494479 | Msa0786890:three_prime_UTR | 30.0% | |
| TGAGAAGAAAATCGAATTTG+AGG | - | chr5_2:72494541-72494560 | Msa0786890:three_prime_UTR | 30.0% | |
| GTGAATTAACCTGTAATTTG+AGG | + | chr5_2:72494613-72494632 | None:intergenic | 30.0% | |
| ACTGTTCCTGTTATTAAAGA+TGG | - | chr5_2:72494752-72494771 | Msa0786890:CDS | 30.0% | |
| TAGTCTCCATCTTTAATAAC+AGG | + | chr5_2:72494761-72494780 | None:intergenic | 30.0% | |
| ! | TAAGTAGAAAAGCATGACAT+GGG | + | chr5_2:72494811-72494830 | None:intergenic | 30.0% |
| ! | ATAAGTAGAAAAGCATGACA+TGG | + | chr5_2:72494812-72494831 | None:intergenic | 30.0% |
| GCTTGTAAACACTTTAAACA+AGG | - | chr5_2:72494869-72494888 | Msa0786890:CDS | 30.0% | |
| CACCCTCAAAAAAAAAATTG+AGG | + | chr5_2:72494928-72494947 | None:intergenic | 30.0% | |
| !!! | CTCAATTTTTTTTTTGAGGG+TGG | - | chr5_2:72494926-72494945 | Msa0786890:CDS | 30.0% |
| ! | CATATAACCAATAGTATTGG+AGG | + | chr5_2:72495003-72495022 | None:intergenic | 30.0% |
| GCTGAAAAATATAGATCTCA+AGG | - | chr5_2:72495203-72495222 | Msa0786890:intron | 30.0% | |
| AGGAAAGACAATAGAAGATA+AGG | - | chr5_2:72495238-72495257 | Msa0786890:intron | 30.0% | |
| GGAAAGACAATAGAAGATAA+GGG | - | chr5_2:72495239-72495258 | Msa0786890:intron | 30.0% | |
| TGTTGAACATTTATGAAGAG+AGG | - | chr5_2:72495411-72495430 | Msa0786890:intron | 30.0% | |
| GGATTACGTTGTTAACAATA+TGG | - | chr5_2:72495502-72495521 | Msa0786890:CDS | 30.0% | |
| ATATAAGTAGTAGACCATCA+TGG | - | chr5_2:72495576-72495595 | Msa0786890:intron | 30.0% | |
| TCCAACTTAAGTGTATCTTT+GGG | - | chr5_2:72495625-72495644 | Msa0786890:intron | 30.0% | |
| TGGTAAATGTTACACTTTAG+AGG | - | chr5_2:72495692-72495711 | Msa0786890:CDS | 30.0% | |
| TTTAGAGGTTAACAAAATCG+CGG | - | chr5_2:72495707-72495726 | Msa0786890:CDS | 30.0% | |
| !!! | GGTTTTAAAAAGTTTCAACG+TGG | - | chr5_2:72495811-72495830 | Msa0786890:five_prime_UTR | 30.0% |
| ! | TTATAGTCACTGAGGTTGAT+CGG | + | chr5_2:72494384-72494403 | None:intergenic | 35.0% |
| CTTCATTCTTATAGTCACTG+AGG | + | chr5_2:72494392-72494411 | None:intergenic | 35.0% | |
| GGATGAAAGAAAAACAGAAG+AGG | + | chr5_2:72494635-72494654 | None:intergenic | 35.0% | |
| ATAACAGGAACAGTTCCAAA+AGG | + | chr5_2:72494746-72494765 | None:intergenic | 35.0% | |
| ! | AAGTAGAAAAGCATGACATG+GGG | + | chr5_2:72494810-72494829 | None:intergenic | 35.0% |
| TTGAGGGTGGACATAATATT+TGG | - | chr5_2:72494939-72494958 | Msa0786890:CDS | 35.0% | |
| GAAAAGACCTCCAATACTAT+TGG | - | chr5_2:72494993-72495012 | Msa0786890:CDS | 35.0% | |
| CATCTATTTGTGCAGAATCT+CGG | - | chr5_2:72495162-72495181 | Msa0786890:intron | 35.0% | |
| ATCTATTTGTGCAGAATCTC+GGG | - | chr5_2:72495163-72495182 | Msa0786890:intron | 35.0% | |
| AATAGAAGATAAGGGTCTTG+TGG | - | chr5_2:72495247-72495266 | Msa0786890:intron | 35.0% | |
| AGGTCAAATTGTATGCTGAT+GGG | + | chr5_2:72495307-72495326 | None:intergenic | 35.0% | |
| GCTATCAAAGAGCAAGTATT+TGG | - | chr5_2:72495433-72495452 | Msa0786890:intron | 35.0% | |
| TATGAGTCACCTTCCATTTA+TGG | - | chr5_2:72495481-72495500 | Msa0786890:intron | 35.0% | |
| CAACGTAATCCATAAATGGA+AGG | + | chr5_2:72495493-72495512 | None:intergenic | 35.0% | |
| GGGGAAGGATTATTTGATAA+AGG | - | chr5_2:72495523-72495542 | Msa0786890:CDS | 35.0% | |
| ! | ATAGGAAGTATGTTAGTGCT+TGG | - | chr5_2:72495546-72495565 | Msa0786890:intron | 35.0% |
| TCAAGAACTTTGTTCCATGA+TGG | + | chr5_2:72495593-72495612 | None:intergenic | 35.0% | |
| !! | CAAAGATACACTTAAGTTGG+AGG | + | chr5_2:72495626-72495645 | None:intergenic | 35.0% |
| CTCCAACTTAAGTGTATCTT+TGG | - | chr5_2:72495624-72495643 | Msa0786890:intron | 35.0% | |
| ACCCAAAGATACACTTAAGT+TGG | + | chr5_2:72495629-72495648 | None:intergenic | 35.0% | |
| ATAGTGATTTACCACGATTG+TGG | - | chr5_2:72495672-72495691 | Msa0786890:CDS | 35.0% | |
| TGTAACATTTACCACAATCG+TGG | + | chr5_2:72495686-72495705 | None:intergenic | 35.0% | |
| !! | GTTTCAACGTGGTTCTAAAA+AGG | - | chr5_2:72495822-72495841 | Msa0786890:five_prime_UTR | 35.0% |
| AAAGGTTAAAGGGAAAGTCA+TGG | - | chr5_2:72495849-72495868 | Msa0786890:five_prime_UTR | 35.0% | |
| ! | TTATAGTCACTGAGGTTGAT+CGG | + | chr5_2:72494384-72494403 | None:intergenic | 35.0% |
| CTTCATTCTTATAGTCACTG+AGG | + | chr5_2:72494392-72494411 | None:intergenic | 35.0% | |
| GGATGAAAGAAAAACAGAAG+AGG | + | chr5_2:72494635-72494654 | None:intergenic | 35.0% | |
| ATAACAGGAACAGTTCCAAA+AGG | + | chr5_2:72494746-72494765 | None:intergenic | 35.0% | |
| ! | AAGTAGAAAAGCATGACATG+GGG | + | chr5_2:72494810-72494829 | None:intergenic | 35.0% |
| TTGAGGGTGGACATAATATT+TGG | - | chr5_2:72494939-72494958 | Msa0786890:CDS | 35.0% | |
| GAAAAGACCTCCAATACTAT+TGG | - | chr5_2:72494993-72495012 | Msa0786890:CDS | 35.0% | |
| CATCTATTTGTGCAGAATCT+CGG | - | chr5_2:72495162-72495181 | Msa0786890:intron | 35.0% | |
| ATCTATTTGTGCAGAATCTC+GGG | - | chr5_2:72495163-72495182 | Msa0786890:intron | 35.0% | |
| AATAGAAGATAAGGGTCTTG+TGG | - | chr5_2:72495247-72495266 | Msa0786890:intron | 35.0% | |
| AGGTCAAATTGTATGCTGAT+GGG | + | chr5_2:72495307-72495326 | None:intergenic | 35.0% | |
| GCTATCAAAGAGCAAGTATT+TGG | - | chr5_2:72495433-72495452 | Msa0786890:intron | 35.0% | |
| TATGAGTCACCTTCCATTTA+TGG | - | chr5_2:72495481-72495500 | Msa0786890:intron | 35.0% | |
| CAACGTAATCCATAAATGGA+AGG | + | chr5_2:72495493-72495512 | None:intergenic | 35.0% | |
| GGGGAAGGATTATTTGATAA+AGG | - | chr5_2:72495523-72495542 | Msa0786890:CDS | 35.0% | |
| ! | ATAGGAAGTATGTTAGTGCT+TGG | - | chr5_2:72495546-72495565 | Msa0786890:intron | 35.0% |
| TCAAGAACTTTGTTCCATGA+TGG | + | chr5_2:72495593-72495612 | None:intergenic | 35.0% | |
| !! | CAAAGATACACTTAAGTTGG+AGG | + | chr5_2:72495626-72495645 | None:intergenic | 35.0% |
| CTCCAACTTAAGTGTATCTT+TGG | - | chr5_2:72495624-72495643 | Msa0786890:intron | 35.0% | |
| ACCCAAAGATACACTTAAGT+TGG | + | chr5_2:72495629-72495648 | None:intergenic | 35.0% | |
| ATAGTGATTTACCACGATTG+TGG | - | chr5_2:72495672-72495691 | Msa0786890:CDS | 35.0% | |
| TGTAACATTTACCACAATCG+TGG | + | chr5_2:72495686-72495705 | None:intergenic | 35.0% | |
| !! | GTTTCAACGTGGTTCTAAAA+AGG | - | chr5_2:72495822-72495841 | Msa0786890:five_prime_UTR | 35.0% |
| AAAGGTTAAAGGGAAAGTCA+TGG | - | chr5_2:72495849-72495868 | Msa0786890:five_prime_UTR | 35.0% | |
| ! | AGACCAAAACATGGTAGTGA+AGG | - | chr5_2:72494469-72494488 | Msa0786890:three_prime_UTR | 40.0% |
| ! | ACACCTTCACTACCATGTTT+TGG | + | chr5_2:72494475-72494494 | None:intergenic | 40.0% |
| ! | AACATGGTAGTGAAGGTGTA+TGG | - | chr5_2:72494476-72494495 | Msa0786890:three_prime_UTR | 40.0% |
| GGTTGTCCCTATTAATGTCT+TGG | - | chr5_2:72494562-72494581 | Msa0786890:three_prime_UTR | 40.0% | |
| TGTCCCTATTAATGTCTTGG+AGG | - | chr5_2:72494565-72494584 | Msa0786890:three_prime_UTR | 40.0% | |
| GTCCCTATTAATGTCTTGGA+GGG | - | chr5_2:72494566-72494585 | Msa0786890:three_prime_UTR | 40.0% | |
| CACCCTCCAAGACATTAATA+GGG | + | chr5_2:72494571-72494590 | None:intergenic | 40.0% | |
| TCACCCTCCAAGACATTAAT+AGG | + | chr5_2:72494572-72494591 | None:intergenic | 40.0% | |
| ACCTGAGTACCTCAAATTAC+AGG | - | chr5_2:72494601-72494620 | Msa0786890:three_prime_UTR | 40.0% | |
| ! | ACCTGTAATTTGAGGTACTC+AGG | + | chr5_2:72494605-72494624 | None:intergenic | 40.0% |
| GATGGAGACTATACCCTTTA+TGG | - | chr5_2:72494770-72494789 | Msa0786890:CDS | 40.0% | |
| TCTCAAGGAGTTGAGTTACT+AGG | - | chr5_2:72495218-72495237 | Msa0786890:intron | 40.0% | |
| ! | ATAAGGGTCTTGTGGAACAA+TGG | - | chr5_2:72495255-72495274 | Msa0786890:intron | 40.0% |
| TCAAATTGTATGCTGATGGG+TGG | + | chr5_2:72495304-72495323 | None:intergenic | 40.0% | |
| CAGGTCAAATTGTATGCTGA+TGG | + | chr5_2:72495308-72495327 | None:intergenic | 40.0% | |
| TGCAGGAAACAAACATTGAC+AGG | + | chr5_2:72495327-72495346 | None:intergenic | 40.0% | |
| TCTTCAATCACCTTTGGATC+TGG | + | chr5_2:72495368-72495387 | None:intergenic | 40.0% | |
| TCACTCTCTTCAATCACCTT+TGG | + | chr5_2:72495374-72495393 | None:intergenic | 40.0% | |
| TGAAGAGAGTGAAGCAAAGT+TGG | - | chr5_2:72495382-72495401 | Msa0786890:intron | 40.0% | |
| GAAGAGAGTGAAGCAAAGTT+GGG | - | chr5_2:72495383-72495402 | Msa0786890:intron | 40.0% | |
| TCAAAGAGCAAGTATTTGGC+TGG | - | chr5_2:72495437-72495456 | Msa0786890:intron | 40.0% | |
| CGTTGTTAACAATATGGGGA+AGG | - | chr5_2:72495508-72495527 | Msa0786890:CDS | 40.0% | |
| ! | AGACCAAAACATGGTAGTGA+AGG | - | chr5_2:72494469-72494488 | Msa0786890:three_prime_UTR | 40.0% |
| ! | ACACCTTCACTACCATGTTT+TGG | + | chr5_2:72494475-72494494 | None:intergenic | 40.0% |
| ! | AACATGGTAGTGAAGGTGTA+TGG | - | chr5_2:72494476-72494495 | Msa0786890:three_prime_UTR | 40.0% |
| GGTTGTCCCTATTAATGTCT+TGG | - | chr5_2:72494562-72494581 | Msa0786890:three_prime_UTR | 40.0% | |
| TGTCCCTATTAATGTCTTGG+AGG | - | chr5_2:72494565-72494584 | Msa0786890:three_prime_UTR | 40.0% | |
| GTCCCTATTAATGTCTTGGA+GGG | - | chr5_2:72494566-72494585 | Msa0786890:three_prime_UTR | 40.0% | |
| CACCCTCCAAGACATTAATA+GGG | + | chr5_2:72494571-72494590 | None:intergenic | 40.0% | |
| TCACCCTCCAAGACATTAAT+AGG | + | chr5_2:72494572-72494591 | None:intergenic | 40.0% | |
| ACCTGAGTACCTCAAATTAC+AGG | - | chr5_2:72494601-72494620 | Msa0786890:three_prime_UTR | 40.0% | |
| ! | ACCTGTAATTTGAGGTACTC+AGG | + | chr5_2:72494605-72494624 | None:intergenic | 40.0% |
| GATGGAGACTATACCCTTTA+TGG | - | chr5_2:72494770-72494789 | Msa0786890:CDS | 40.0% | |
| TCTCAAGGAGTTGAGTTACT+AGG | - | chr5_2:72495218-72495237 | Msa0786890:intron | 40.0% | |
| ! | ATAAGGGTCTTGTGGAACAA+TGG | - | chr5_2:72495255-72495274 | Msa0786890:intron | 40.0% |
| TCAAATTGTATGCTGATGGG+TGG | + | chr5_2:72495304-72495323 | None:intergenic | 40.0% | |
| CAGGTCAAATTGTATGCTGA+TGG | + | chr5_2:72495308-72495327 | None:intergenic | 40.0% | |
| TGCAGGAAACAAACATTGAC+AGG | + | chr5_2:72495327-72495346 | None:intergenic | 40.0% | |
| TCTTCAATCACCTTTGGATC+TGG | + | chr5_2:72495368-72495387 | None:intergenic | 40.0% | |
| TCACTCTCTTCAATCACCTT+TGG | + | chr5_2:72495374-72495393 | None:intergenic | 40.0% | |
| TGAAGAGAGTGAAGCAAAGT+TGG | - | chr5_2:72495382-72495401 | Msa0786890:intron | 40.0% | |
| GAAGAGAGTGAAGCAAAGTT+GGG | - | chr5_2:72495383-72495402 | Msa0786890:intron | 40.0% | |
| TCAAAGAGCAAGTATTTGGC+TGG | - | chr5_2:72495437-72495456 | Msa0786890:intron | 40.0% | |
| CGTTGTTAACAATATGGGGA+AGG | - | chr5_2:72495508-72495527 | Msa0786890:CDS | 40.0% | |
| AAGACAAACCAACACCCGTT+TGG | + | chr5_2:72494519-72494538 | None:intergenic | 45.0% | |
| ! | GTTCACAATCTGCAGCCTTT+TGG | - | chr5_2:72494728-72494747 | Msa0786890:CDS | 45.0% |
| TTTCCTGCACTACTAGCTGA+CGG | - | chr5_2:72495338-72495357 | Msa0786890:intron | 45.0% | |
| GAAGGTGACTCATATCAGCA+AGG | + | chr5_2:72495475-72495494 | None:intergenic | 45.0% | |
| ! | GGAAGTATGTTAGTGCTTGG+TGG | - | chr5_2:72495549-72495568 | Msa0786890:intron | 45.0% |
| AAGACAAACCAACACCCGTT+TGG | + | chr5_2:72494519-72494538 | None:intergenic | 45.0% | |
| ! | GTTCACAATCTGCAGCCTTT+TGG | - | chr5_2:72494728-72494747 | Msa0786890:CDS | 45.0% |
| TTTCCTGCACTACTAGCTGA+CGG | - | chr5_2:72495338-72495357 | Msa0786890:intron | 45.0% | |
| GAAGGTGACTCATATCAGCA+AGG | + | chr5_2:72495475-72495494 | None:intergenic | 45.0% | |
| ! | GGAAGTATGTTAGTGCTTGG+TGG | - | chr5_2:72495549-72495568 | Msa0786890:intron | 45.0% |
| !!! | TTTTTTTATAAAAATATTTG+TGG | + | chr5_2:72495041-72495060 | None:intergenic | 5.0% |
| !!! | TATAAAAAAATCATTTTAAA+AGG | - | chr5_2:72495051-72495070 | Msa0786890:CDS | 5.0% |
| !!! | TTTTTTTATAAAAATATTTG+TGG | + | chr5_2:72495041-72495060 | None:intergenic | 5.0% |
| !!! | TATAAAAAAATCATTTTAAA+AGG | - | chr5_2:72495051-72495070 | Msa0786890:CDS | 5.0% |
| ! | AGTCACTGAGGTTGATCGGT+GGG | + | chr5_2:72494380-72494399 | None:intergenic | 50.0% |
| ! | TAGTCACTGAGGTTGATCGG+TGG | + | chr5_2:72494381-72494400 | None:intergenic | 50.0% |
| GAGTGAAGCAAAGTTGGGCA+AGG | - | chr5_2:72495388-72495407 | Msa0786890:intron | 50.0% | |
| ! | AGTCACTGAGGTTGATCGGT+GGG | + | chr5_2:72494380-72494399 | None:intergenic | 50.0% |
| ! | TAGTCACTGAGGTTGATCGG+TGG | + | chr5_2:72494381-72494400 | None:intergenic | 50.0% |
| GAGTGAAGCAAAGTTGGGCA+AGG | - | chr5_2:72495388-72495407 | Msa0786890:intron | 50.0% | |
| ACTCCACGTAGGGCAAGAAG+CGG | + | chr5_2:72494345-72494364 | None:intergenic | 55.0% | |
| TGATCGGTGGGAATCCTGCT+GGG | + | chr5_2:72494368-72494387 | None:intergenic | 55.0% | |
| TTGATCGGTGGGAATCCTGC+TGG | + | chr5_2:72494369-72494388 | None:intergenic | 55.0% | |
| CGTTTGGCTGAGGCACAATG+GGG | + | chr5_2:72494503-72494522 | None:intergenic | 55.0% | |
| CCGTTTGGCTGAGGCACAAT+GGG | + | chr5_2:72494504-72494523 | None:intergenic | 55.0% | |
| CCCATTGTGCCTCAGCCAAA+CGG | - | chr5_2:72494501-72494520 | Msa0786890:three_prime_UTR | 55.0% | |
| CCATTGTGCCTCAGCCAAAC+GGG | - | chr5_2:72494502-72494521 | Msa0786890:three_prime_UTR | 55.0% | |
| AACCAACACCCGTTTGGCTG+AGG | + | chr5_2:72494513-72494532 | None:intergenic | 55.0% | |
| TGACGGCACTCCAGATCCAA+AGG | - | chr5_2:72495355-72495374 | Msa0786890:intron | 55.0% | |
| ACTCCACGTAGGGCAAGAAG+CGG | + | chr5_2:72494345-72494364 | None:intergenic | 55.0% | |
| TGATCGGTGGGAATCCTGCT+GGG | + | chr5_2:72494368-72494387 | None:intergenic | 55.0% | |
| TTGATCGGTGGGAATCCTGC+TGG | + | chr5_2:72494369-72494388 | None:intergenic | 55.0% | |
| CGTTTGGCTGAGGCACAATG+GGG | + | chr5_2:72494503-72494522 | None:intergenic | 55.0% | |
| CCGTTTGGCTGAGGCACAAT+GGG | + | chr5_2:72494504-72494523 | None:intergenic | 55.0% | |
| CCCATTGTGCCTCAGCCAAA+CGG | - | chr5_2:72494501-72494520 | Msa0786890:three_prime_UTR | 55.0% | |
| CCATTGTGCCTCAGCCAAAC+GGG | - | chr5_2:72494502-72494521 | Msa0786890:three_prime_UTR | 55.0% | |
| AACCAACACCCGTTTGGCTG+AGG | + | chr5_2:72494513-72494532 | None:intergenic | 55.0% | |
| TGACGGCACTCCAGATCCAA+AGG | - | chr5_2:72495355-72495374 | Msa0786890:intron | 55.0% | |
| TCACCGCTTCTTGCCCTACG+TGG | - | chr5_2:72494339-72494358 | Msa0786890:three_prime_UTR | 60.0% | |
| TCCTGCTGGGACTCCACGTA+GGG | + | chr5_2:72494355-72494374 | None:intergenic | 60.0% | |
| ATCCTGCTGGGACTCCACGT+AGG | + | chr5_2:72494356-72494375 | None:intergenic | 60.0% | |
| CCCGTTTGGCTGAGGCACAA+TGG | + | chr5_2:72494505-72494524 | None:intergenic | 60.0% | |
| TGCCTCAGCCAAACGGGTGT+TGG | - | chr5_2:72494508-72494527 | Msa0786890:three_prime_UTR | 60.0% | |
| GTGCCGTCAGCTAGTAGTGC+AGG | + | chr5_2:72495344-72495363 | None:intergenic | 60.0% | |
| TCACCGCTTCTTGCCCTACG+TGG | - | chr5_2:72494339-72494358 | Msa0786890:three_prime_UTR | 60.0% | |
| TCCTGCTGGGACTCCACGTA+GGG | + | chr5_2:72494355-72494374 | None:intergenic | 60.0% | |
| ATCCTGCTGGGACTCCACGT+AGG | + | chr5_2:72494356-72494375 | None:intergenic | 60.0% | |
| CCCGTTTGGCTGAGGCACAA+TGG | + | chr5_2:72494505-72494524 | None:intergenic | 60.0% | |
| TGCCTCAGCCAAACGGGTGT+TGG | - | chr5_2:72494508-72494527 | Msa0786890:three_prime_UTR | 60.0% | |
| GTGCCGTCAGCTAGTAGTGC+AGG | + | chr5_2:72495344-72495363 | None:intergenic | 60.0% | |
| GCCCTACGTGGAGTCCCAGC+AGG | - | chr5_2:72494351-72494370 | Msa0786890:three_prime_UTR | 70.0% | |
| GCCCTACGTGGAGTCCCAGC+AGG | - | chr5_2:72494351-72494370 | Msa0786890:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 72494303 | 72495983 | 72494303 | ID=Msa0786890;Name=Msa0786890 |
| chr5_2 | mRNA | 72494303 | 72495983 | 72494303 | ID=Msa0786890-mRNA-1;Parent=Msa0786890;Name=Msa0786890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=176|1|1|1|0.66|0.5|4|300|216 |
| chr5_2 | exon | 72494303 | 72494407 | 72494303 | ID=Msa0786890-mRNA-1:exon:22051;Parent=Msa0786890-mRNA-1 |
| chr5_2 | exon | 72494457 | 72495109 | 72494457 | ID=Msa0786890-mRNA-1:exon:22050;Parent=Msa0786890-mRNA-1 |
| chr5_2 | exon | 72495495 | 72495543 | 72495495 | ID=Msa0786890-mRNA-1:exon:22049;Parent=Msa0786890-mRNA-1 |
| chr5_2 | exon | 72495664 | 72495983 | 72495664 | ID=Msa0786890-mRNA-1:exon:22048;Parent=Msa0786890-mRNA-1 |
| chr5_2 | five_prime_UTR | 72495808 | 72495983 | 72495808 | ID=Msa0786890-mRNA-1:five_prime_utr;Parent=Msa0786890-mRNA-1 |
| chr5_2 | CDS | 72495664 | 72495807 | 72495664 | ID=Msa0786890-mRNA-1:cds;Parent=Msa0786890-mRNA-1 |
| chr5_2 | CDS | 72495495 | 72495543 | 72495495 | ID=Msa0786890-mRNA-1:cds;Parent=Msa0786890-mRNA-1 |
| chr5_2 | CDS | 72494652 | 72495109 | 72494652 | ID=Msa0786890-mRNA-1:cds;Parent=Msa0786890-mRNA-1 |
| chr5_2 | three_prime_UTR | 72494457 | 72494651 | 72494457 | ID=Msa0786890-mRNA-1:three_prime_utr;Parent=Msa0786890-mRNA-1 |
| chr5_2 | three_prime_UTR | 72494303 | 72494407 | 72494303 | ID=Msa0786890-mRNA-1:three_prime_utr;Parent=Msa0786890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
