Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763350 | XP_003612708.1 | 96.829 | 410 | 11 | 1 | 1 | 408 | 1 | 410 | 0.0 | 815 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763350 | sp|Q9LVJ0|UVB31_ARATH | 47.321 | 336 | 161 | 7 | 80 | 406 | 91 | 419 | 1.17e-93 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763350 | G7K9K7 | 96.829 | 410 | 11 | 1 | 1 | 408 | 1 | 410 | 0.0 | 815 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009800 | Msa0763350 | 0.803363 | 3.612731e-49 | -8.615850e-47 |
| Msa0028280 | Msa0763350 | 0.803566 | 3.279595e-49 | -8.615850e-47 |
| Msa0032450 | Msa0763350 | 0.849710 | 2.715084e-60 | -8.615850e-47 |
| Msa0039920 | Msa0763350 | 0.805129 | 1.549651e-49 | -8.615850e-47 |
| Msa0040090 | Msa0763350 | 0.811444 | 6.978942e-51 | -8.615850e-47 |
| Msa0041780 | Msa0763350 | 0.852537 | 4.326159e-61 | -8.615850e-47 |
| Msa0057740 | Msa0763350 | 0.823616 | 1.258535e-53 | -8.615850e-47 |
| Msa0059590 | Msa0763350 | 0.809525 | 1.812469e-50 | -8.615850e-47 |
| Msa0063830 | Msa0763350 | 0.826318 | 2.897193e-54 | -8.615850e-47 |
| Msa0085030 | Msa0763350 | -0.807027 | 6.177017e-50 | -8.615850e-47 |
| Msa0087580 | Msa0763350 | 0.820046 | 8.436304e-53 | -8.615850e-47 |
| Msa0087780 | Msa0763350 | 0.805809 | 1.115896e-49 | -8.615850e-47 |
| Msa0088670 | Msa0763350 | 0.803344 | 3.646526e-49 | -8.615850e-47 |
| Msa0089080 | Msa0763350 | -0.809292 | 2.033618e-50 | -8.615850e-47 |
| Msa0096020 | Msa0763350 | 0.835277 | 1.842339e-56 | -8.615850e-47 |
| Msa0097970 | Msa0763350 | 0.804067 | 2.581240e-49 | -8.615850e-47 |
| Msa0103060 | Msa0763350 | 0.813374 | 2.643523e-51 | -8.615850e-47 |
| Msa0116950 | Msa0763350 | 0.804095 | 2.546442e-49 | -8.615850e-47 |
| Msa0606680 | Msa0763350 | 0.810193 | 1.301836e-50 | -8.615850e-47 |
| Msa0621780 | Msa0763350 | 0.807591 | 4.689946e-50 | -8.615850e-47 |
| Msa0630850 | Msa0763350 | 0.802291 | 6.015986e-49 | -8.615850e-47 |
| Msa0646390 | Msa0763350 | 0.813050 | 3.114789e-51 | -8.615850e-47 |
| Msa0675230 | Msa0763350 | 0.831530 | 1.584095e-55 | -8.615850e-47 |
| Msa0734760 | Msa0763350 | 0.801939 | 7.106375e-49 | -8.615850e-47 |
| Msa0736930 | Msa0763350 | 0.823028 | 1.726633e-53 | -8.615850e-47 |
| Msa0739610 | Msa0763350 | 0.809028 | 2.316094e-50 | -8.615850e-47 |
| Msa0754350 | Msa0763350 | 0.815640 | 8.335689e-52 | -8.615850e-47 |
| Msa0754790 | Msa0763350 | 0.806869 | 6.671515e-50 | -8.615850e-47 |
| Msa0754840 | Msa0763350 | 0.816431 | 5.550593e-52 | -8.615850e-47 |
| Msa0763350 | Msa0763910 | 0.808363 | 3.213965e-50 | -8.615850e-47 |
| Msa0763350 | Msa0776290 | 0.804504 | 2.092533e-49 | -8.615850e-47 |
| Msa0763350 | Msa0776590 | 0.839642 | 1.402493e-57 | -8.615850e-47 |
| Msa0763350 | Msa0782030 | 0.817532 | 3.140722e-52 | -8.615850e-47 |
| Msa0763350 | Msa0786890 | 0.802038 | 6.782069e-49 | -8.615850e-47 |
| Msa0763350 | Msa0793060 | 0.818472 | 1.926045e-52 | -8.615850e-47 |
| Msa0763350 | Msa0795710 | 0.807153 | 5.809189e-50 | -8.615850e-47 |
| Msa0763350 | Msa0796610 | 0.806259 | 8.971011e-50 | -8.615850e-47 |
| Msa0763350 | Msa0822370 | 0.815125 | 1.084962e-51 | -8.615850e-47 |
| Msa0763350 | Msa0833910 | 0.802343 | 5.869792e-49 | -8.615850e-47 |
| Msa0763350 | Msa0834160 | 0.818681 | 1.726737e-52 | -8.615850e-47 |
| Msa0763350 | Msa0834200 | 0.820055 | 8.396141e-53 | -8.615850e-47 |
| Msa0763350 | Msa0838100 | 0.800090 | 1.696636e-48 | -8.615850e-47 |
| Msa0763350 | Msa0840890 | 0.819316 | 1.237877e-52 | -8.615850e-47 |
| Msa0763350 | Msa0844100 | 0.841600 | 4.307580e-58 | -8.615850e-47 |
| Msa0763350 | Msa0848780 | 0.815285 | 1.000042e-51 | -8.615850e-47 |
| Msa0763350 | Msa0849290 | 0.818557 | 1.841857e-52 | -8.615850e-47 |
| Msa0763350 | Msa0861480 | 0.857236 | 1.872818e-62 | -8.615850e-47 |
| Msa0763350 | Msa0861560 | 0.836908 | 7.100741e-57 | -8.615850e-47 |
| Msa0763350 | Msa0861800 | 0.805745 | 1.150685e-49 | -8.615850e-47 |
| Msa0763350 | Msa0863470 | 0.817538 | 3.130276e-52 | -8.615850e-47 |
| Msa0763350 | Msa0899730 | 0.803305 | 3.713941e-49 | -8.615850e-47 |
| Msa0763350 | Msa0927190 | 0.811993 | 5.301583e-51 | -8.615850e-47 |
| Msa0763350 | Msa0930950 | 0.804673 | 1.929913e-49 | -8.615850e-47 |
| Msa0763350 | Msa0946300 | 0.801868 | 7.350631e-49 | -8.615850e-47 |
| Msa0763350 | Msa0950410 | 0.828542 | 8.485611e-55 | -8.615850e-47 |
| Msa0763350 | Msa0968240 | 0.816680 | 4.881919e-52 | -8.615850e-47 |
| Msa0763350 | Msa0986620 | 0.823567 | 1.291811e-53 | -8.615850e-47 |
| Msa0763350 | Msa0999480 | 0.835395 | 1.720074e-56 | -8.615850e-47 |
| Msa0763350 | Msa1021600 | 0.801874 | 7.326591e-49 | -8.615850e-47 |
| Msa0763350 | Msa1046220 | -0.812345 | 4.442921e-51 | -8.615850e-47 |
| Msa0763350 | Msa1061760 | -0.812676 | 3.760350e-51 | -8.615850e-47 |
| Msa0763350 | Msa1067910 | 0.805834 | 1.102255e-49 | -8.615850e-47 |
| Msa0763350 | Msa1069440 | 0.814687 | 1.357063e-51 | -8.615850e-47 |
| Msa0763350 | Msa1071310 | 0.841667 | 4.136485e-58 | -8.615850e-47 |
| Msa0763350 | Msa1071460 | 0.815648 | 8.301395e-52 | -8.615850e-47 |
| Msa0763350 | Msa1101300 | 0.801803 | 7.579307e-49 | -8.615850e-47 |
| Msa0763350 | Msa1102180 | 0.811845 | 5.711327e-51 | -8.615850e-47 |
| Msa0763350 | Msa1107320 | -0.821772 | 3.380217e-53 | -8.615850e-47 |
| Msa0763350 | Msa1124440 | 0.800574 | 1.352345e-48 | -8.615850e-47 |
| Msa0763350 | Msa1138600 | 0.817357 | 3.439787e-52 | -8.615850e-47 |
| Msa0763350 | Msa1150860 | -0.835351 | 1.764920e-56 | -8.615850e-47 |
| Msa0763350 | Msa1150880 | -0.806409 | 8.344344e-50 | -8.615850e-47 |
| Msa0763350 | Msa1161520 | 0.803446 | 3.472360e-49 | -8.615850e-47 |
| Msa0763350 | Msa1187810 | 0.802056 | 6.724117e-49 | -8.615850e-47 |
| Msa0763350 | Msa1190090 | -0.821389 | 4.143683e-53 | -8.615850e-47 |
| Msa0763350 | Msa1211300 | 0.806652 | 7.412361e-50 | -8.615850e-47 |
| Msa0763350 | Msa1211390 | 0.802140 | 6.460990e-49 | -8.615850e-47 |
| Msa0763350 | Msa1212740 | 0.803427 | 3.503807e-49 | -8.615850e-47 |
| Msa0763350 | Msa1230190 | 0.802861 | 4.588318e-49 | -8.615850e-47 |
| Msa0763350 | Msa1242990 | 0.819391 | 1.190521e-52 | -8.615850e-47 |
| Msa0763350 | Msa1258020 | -0.820297 | 7.390782e-53 | -8.615850e-47 |
| Msa0763350 | Msa1258100 | 0.803319 | 3.689487e-49 | -8.615850e-47 |
| Msa0763350 | Msa1266710 | -0.810412 | 1.167446e-50 | -8.615850e-47 |
| Msa0763350 | Msa1282210 | 0.811271 | 7.609591e-51 | -8.615850e-47 |
| Msa0763350 | Msa1283120 | 0.814334 | 1.623991e-51 | -8.615850e-47 |
| Msa0763350 | Msa1286910 | 0.807243 | 5.560589e-50 | -8.615850e-47 |
| Msa0763350 | Msa1286950 | 0.831448 | 1.659945e-55 | -8.615850e-47 |
| Msa0763350 | Msa1295220 | 0.802701 | 4.951637e-49 | -8.615850e-47 |
| Msa0763350 | Msa1297540 | 0.806770 | 7.000399e-50 | -8.615850e-47 |
| Msa0763350 | Msa1319230 | 0.828652 | 7.980965e-55 | -8.615850e-47 |
| Msa0763350 | Msa1327040 | 0.811690 | 6.171514e-51 | -8.615850e-47 |
| Msa0763350 | Msa1335500 | -0.805696 | 1.178285e-49 | -8.615850e-47 |
| Msa0763350 | Msa1336350 | 0.803143 | 4.012951e-49 | -8.615850e-47 |
| Msa0763350 | Msa1342400 | 0.813464 | 2.525693e-51 | -8.615850e-47 |
| Msa0763350 | Msa1348330 | -0.827394 | 1.602659e-54 | -8.615850e-47 |
| Msa0763350 | Msa1349850 | 0.819164 | 1.340734e-52 | -8.615850e-47 |
| Msa0763350 | Msa1364520 | 0.840894 | 6.605165e-58 | -8.615850e-47 |
| Msa0763350 | Msa1366700 | 0.806978 | 6.326661e-50 | -8.615850e-47 |
| Msa0763350 | Msa1368660 | 0.809087 | 2.249730e-50 | -8.615850e-47 |
| Msa0763350 | Msa1381720 | 0.822195 | 2.697018e-53 | -8.615850e-47 |
| Msa0763350 | Msa1384980 | 0.841996 | 3.384529e-58 | -8.615850e-47 |
| Msa0763350 | Msa1388070 | 0.800135 | 1.660971e-48 | -8.615850e-47 |
| Msa0763350 | Msa1395580 | 0.804779 | 1.833386e-49 | -8.615850e-47 |
| Msa0763350 | Msa1401650 | -0.821807 | 3.318192e-53 | -8.615850e-47 |
| Msa0763350 | Msa1403950 | 0.829913 | 3.945587e-55 | -8.615850e-47 |
| Msa0763350 | Msa1408190 | 0.808302 | 3.310236e-50 | -8.615850e-47 |
| Msa0763350 | Msa1409060 | -0.806581 | 7.673591e-50 | -8.615850e-47 |
| Msa0763350 | Msa1413220 | 0.840141 | 1.039427e-57 | -8.615850e-47 |
| Msa0763350 | Msa1413900 | 0.812242 | 4.678979e-51 | -8.615850e-47 |
| Msa0763350 | Msa1432250 | 0.800698 | 1.275550e-48 | -8.615850e-47 |
| Msa0763350 | Msa1442070 | 0.836896 | 7.150857e-57 | -8.615850e-47 |
| Msa0763350 | Msa1446220 | 0.803305 | 3.715056e-49 | -8.615850e-47 |
| Msa0763350 | Msa1448990 | 0.807349 | 5.278992e-50 | -8.615850e-47 |
| Msa0763350 | Msa1451690 | 0.854637 | 1.077960e-61 | -8.615850e-47 |
| Msa0763350 | Msa1452200 | 0.800087 | 1.698638e-48 | -8.615850e-47 |
| Msa0763350 | Msa1459630 | 0.805449 | 1.328055e-49 | -8.615850e-47 |
| Msa0128110 | Msa0763350 | 0.802932 | 4.435599e-49 | -8.615850e-47 |
| Msa0129270 | Msa0763350 | -0.806864 | 6.685618e-50 | -8.615850e-47 |
| Msa0134300 | Msa0763350 | 0.819510 | 1.118596e-52 | -8.615850e-47 |
| Msa0134380 | Msa0763350 | 0.826900 | 2.104853e-54 | -8.615850e-47 |
| Msa0135890 | Msa0763350 | -0.805169 | 1.520137e-49 | -8.615850e-47 |
| Msa0149630 | Msa0763350 | 0.809757 | 1.616120e-50 | -8.615850e-47 |
| Msa0160470 | Msa0763350 | 0.802793 | 4.739130e-49 | -8.615850e-47 |
| Msa0163300 | Msa0763350 | 0.819183 | 1.327468e-52 | -8.615850e-47 |
| Msa0180540 | Msa0763350 | 0.802646 | 5.083043e-49 | -8.615850e-47 |
| Msa0180600 | Msa0763350 | 0.812085 | 5.061657e-51 | -8.615850e-47 |
| Msa0186510 | Msa0763350 | 0.843311 | 1.515189e-58 | -8.615850e-47 |
| Msa0210880 | Msa0763350 | 0.819710 | 1.006726e-52 | -8.615850e-47 |
| Msa0222720 | Msa0763350 | 0.816987 | 4.165219e-52 | -8.615850e-47 |
| Msa0378670 | Msa0763350 | 0.850261 | 1.903670e-60 | -8.615850e-47 |
| Msa0378700 | Msa0763350 | 0.852551 | 4.285215e-61 | -8.615850e-47 |
| Msa0379500 | Msa0763350 | 0.812466 | 4.181210e-51 | -8.615850e-47 |
| Msa0385770 | Msa0763350 | 0.838736 | 2.408230e-57 | -8.615850e-47 |
| Msa0404180 | Msa0763350 | 0.836510 | 8.969490e-57 | -8.615850e-47 |
| Msa0421100 | Msa0763350 | 0.800173 | 1.631867e-48 | -8.615850e-47 |
| Msa0423110 | Msa0763350 | 0.822488 | 2.306201e-53 | -8.615850e-47 |
| Msa0426860 | Msa0763350 | 0.803346 | 3.642803e-49 | -8.615850e-47 |
| Msa0428330 | Msa0763350 | 0.808154 | 3.560143e-50 | -8.615850e-47 |
| Msa0431940 | Msa0763350 | 0.815186 | 1.051900e-51 | -8.615850e-47 |
| Msa0433270 | Msa0763350 | 0.830821 | 2.366364e-55 | -8.615850e-47 |
| Msa0456480 | Msa0763350 | 0.827230 | 1.754275e-54 | -8.615850e-47 |
| Msa0463540 | Msa0763350 | 0.822155 | 2.755696e-53 | -8.615850e-47 |
| Msa0473450 | Msa0763350 | 0.815971 | 7.032584e-52 | -8.615850e-47 |
| Msa0475360 | Msa0763350 | 0.813504 | 2.475357e-51 | -8.615850e-47 |
| Msa0239610 | Msa0763350 | 0.807563 | 4.755922e-50 | -8.615850e-47 |
| Msa0251150 | Msa0763350 | 0.811311 | 7.458475e-51 | -8.615850e-47 |
| Msa0264020 | Msa0763350 | 0.815200 | 1.044230e-51 | -8.615850e-47 |
| Msa0267710 | Msa0763350 | -0.827251 | 1.734798e-54 | -8.615850e-47 |
| Msa0270460 | Msa0763350 | 0.800213 | 1.601349e-48 | -8.615850e-47 |
| Msa0290600 | Msa0763350 | 0.814160 | 1.774881e-51 | -8.615850e-47 |
| Msa0356250 | Msa0763350 | -0.802736 | 4.869765e-49 | -8.615850e-47 |
| Msa0358720 | Msa0763350 | 0.820775 | 5.740703e-53 | -8.615850e-47 |
| Msa0492050 | Msa0763350 | 0.808841 | 2.540639e-50 | -8.615850e-47 |
| Msa0501350 | Msa0763350 | 0.813929 | 1.995148e-51 | -8.615850e-47 |
| Msa0511600 | Msa0763350 | 0.812528 | 4.051049e-51 | -8.615850e-47 |
| Msa0520810 | Msa0763350 | 0.808114 | 3.630087e-50 | -8.615850e-47 |
| Msa0521940 | Msa0763350 | -0.800936 | 1.140854e-48 | -8.615850e-47 |
| Msa0549330 | Msa0763350 | 0.807958 | 3.919581e-50 | -8.615850e-47 |
| Msa0554170 | Msa0763350 | 0.825062 | 5.751273e-54 | -8.615850e-47 |
| Msa0558890 | Msa0763350 | 0.822556 | 2.223727e-53 | -8.615850e-47 |
| Msa0565530 | Msa0763350 | 0.802093 | 6.606810e-49 | -8.615850e-47 |
| Msa0568490 | Msa0763350 | 0.830058 | 3.636288e-55 | -8.615850e-47 |
| Msa0580540 | Msa0763350 | 0.820606 | 6.277266e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763350 | MtrunA17_Chr5g0410131 | 96.829 | 410 | 11 | 1 | 1 | 408 | 1 | 410 | 0.0 | 815 |
| Msa0763350 | MtrunA17_Chr8g0393251 | 48.512 | 336 | 156 | 7 | 83 | 406 | 89 | 419 | 4.06e-103 | 311 |
| Msa0763350 | MtrunA17_Chr6g0479321 | 43.091 | 427 | 211 | 11 | 1 | 406 | 1 | 416 | 2.64e-100 | 304 |
| Msa0763350 | MtrunA17_Chr8g0339211 | 32.303 | 356 | 202 | 10 | 67 | 403 | 32 | 367 | 7.32e-52 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0763350 | AT1G32160.1 | 60.870 | 368 | 131 | 6 | 46 | 406 | 43 | 404 | 4.61e-153 | 439 |
| Msa0763350 | AT1G48450.1 | 43.956 | 364 | 175 | 6 | 64 | 406 | 66 | 421 | 4.78e-97 | 296 |
| Msa0763350 | AT3G17800.1 | 47.321 | 336 | 161 | 7 | 80 | 406 | 91 | 419 | 1.19e-94 | 290 |
| Msa0763350 | AT3G17800.2 | 46.707 | 334 | 166 | 6 | 80 | 406 | 97 | 425 | 1.78e-94 | 290 |
| Msa0763350 | AT1G48450.3 | 50.244 | 205 | 96 | 4 | 64 | 263 | 66 | 269 | 5.00e-62 | 203 |
| Msa0763350 | AT1G48450.2 | 50.244 | 205 | 96 | 4 | 64 | 263 | 66 | 269 | 6.29e-62 | 203 |
| Msa0763350 | AT3G07310.1 | 34.320 | 338 | 165 | 7 | 81 | 405 | 60 | 353 | 1.00e-50 | 175 |
| Msa0763350 | AT3G07310.2 | 34.875 | 281 | 129 | 6 | 135 | 405 | 13 | 249 | 1.96e-45 | 158 |
| Msa0763350 | AT5G48590.1 | 31.805 | 349 | 174 | 7 | 61 | 403 | 38 | 328 | 3.22e-45 | 160 |
Find 95 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCTTGACTATGCTTGTTT+TGG | 0.227356 | 5_2:+22528112 | Msa0763350:CDS |
| ATTACTATACTTACTTATAA+AGG | 0.244178 | 5_2:-22526791 | None:intergenic |
| CTAATGAGCAAGTGGATTTA+TGG | 0.244420 | 5_2:+22527523 | Msa0763350:CDS |
| TTCATCCTCGCTCCGGTTAC+CGG | 0.254069 | 5_2:+22523745 | Msa0763350:CDS |
| CATAAATCCACTTGCTCATT+AGG | 0.260522 | 5_2:-22527522 | None:intergenic |
| GACCAACTGGTGACTCAAAT+TGG | 0.287829 | 5_2:-22526641 | None:intergenic |
| GGGAACACTTACACAGGATT+TGG | 0.299384 | 5_2:+22527764 | Msa0763350:CDS |
| AAGCAAACTCAGGCCATCTT+TGG | 0.319554 | 5_2:+22528014 | Msa0763350:CDS |
| GCAAAGAATGTTCTTTCAAC+TGG | 0.320370 | 5_2:+22523794 | Msa0763350:CDS |
| TCTAACTTAAACTCTTGATT+TGG | 0.322643 | 5_2:-22527546 | None:intergenic |
| ATAGCATCAATGCAAGTTTC+AGG | 0.325900 | 5_2:+22523686 | Msa0763350:exon |
| TCGCCAGAGAGGCGGATATC+AGG | 0.325939 | 5_2:-22528041 | None:intergenic |
| GGGATTCAGATTCCTTGATT+AGG | 0.335726 | 5_2:+22527835 | Msa0763350:CDS |
| TACTACATTTCTCATGTTTG+TGG | 0.337781 | 5_2:-22528341 | None:intergenic |
| AATCAATGATATAGCTTCCT+TGG | 0.338228 | 5_2:-22527988 | None:intergenic |
| TCTGAATCCCAGAGCTTGTT+TGG | 0.340795 | 5_2:-22527822 | None:intergenic |
| GAATGGAAATGGCGGAATTC+CGG | 0.350980 | 5_2:-22523764 | None:intergenic |
| GTTCTTTCACTTACCTTCTC+AGG | 0.352943 | 5_2:+22528092 | Msa0763350:CDS |
| TAGAATTGCAATCAATTCAT+TGG | 0.357363 | 5_2:-22528278 | None:intergenic |
| TCTTTCAACTGGATTTCTTA+AGG | 0.359582 | 5_2:+22523805 | Msa0763350:CDS |
| TTACTATACTTACTTATAAA+GGG | 0.365848 | 5_2:-22526790 | None:intergenic |
| GTAGGGTTCATTGTAGTGTT+TGG | 0.387707 | 5_2:-22526544 | None:intergenic |
| TGTAGACGATTCTTCTTTGT+TGG | 0.388612 | 5_2:-22526754 | None:intergenic |
| TCATAATAACCTTCGTCGTC+AGG | 0.392214 | 5_2:-22527864 | None:intergenic |
| TGCTAATCTGAATAATTGTC+TGG | 0.396420 | 5_2:-22527650 | None:intergenic |
| AATTGATTGCAATTCTAAAC+AGG | 0.398798 | 5_2:+22528284 | Msa0763350:three_prime_UTR |
| AAATGTATGTACAGTGCATT+AGG | 0.403190 | 5_2:+22528363 | Msa0763350:three_prime_UTR |
| CATTCTTTGCGTCAGAAGAA+TGG | 0.404137 | 5_2:-22523781 | None:intergenic |
| TGCTGCAATCAGCGACGTTA+TGG | 0.404859 | 5_2:+22523709 | Msa0763350:CDS |
| GGAACACTTACACAGGATTT+GGG | 0.422979 | 5_2:+22527765 | Msa0763350:CDS |
| CAGAGCTTGTTTGGTGGCGA+TGG | 0.425821 | 5_2:-22527813 | None:intergenic |
| CGACGAAGGTTATTATGAAA+TGG | 0.432815 | 5_2:+22527869 | Msa0763350:CDS |
| CATCGCCACCAAACAAGCTC+TGG | 0.439506 | 5_2:+22527814 | Msa0763350:CDS |
| TGTTCCAACAGCTGACCAAC+TGG | 0.446698 | 5_2:-22526654 | None:intergenic |
| GATAATAATCTTCTCATCAA+TGG | 0.452274 | 5_2:+22528397 | Msa0763350:three_prime_UTR |
| TACGCTGCTTCAATAATGTA+TGG | 0.452723 | 5_2:+22527693 | Msa0763350:CDS |
| ACTGGTGAAGGCAAATCATC+TGG | 0.458702 | 5_2:+22527903 | Msa0763350:CDS |
| TTGCGTCAGAAGAATGGAAA+TGG | 0.458993 | 5_2:-22523775 | None:intergenic |
| AGGCCTGATATCCGCCTCTC+TGG | 0.462587 | 5_2:+22528038 | Msa0763350:CDS |
| GTCTTCTATTTAGCAAGAAA+AGG | 0.464050 | 5_2:-22528194 | None:intergenic |
| TTTAGCAAGAAAAGGATACT+TGG | 0.467013 | 5_2:-22528186 | None:intergenic |
| GGTACTAGGAGAACGGGTTG+TGG | 0.467548 | 5_2:+22527620 | Msa0763350:CDS |
| ATCTCTGGTACTAGGAGAAC+GGG | 0.468587 | 5_2:+22527614 | Msa0763350:CDS |
| GAAAGAAAAGCGCACAACAT+TGG | 0.473215 | 5_2:+22527416 | Msa0763350:CDS |
| GAAATGGATGACATGAATAC+TGG | 0.473449 | 5_2:+22527885 | Msa0763350:CDS |
| TTTCTCTAGCTGCTGATCAA+TGG | 0.480611 | 5_2:-22526712 | None:intergenic |
| TTCCATCTTCATCCTCGCTC+CGG | 0.486863 | 5_2:+22523738 | Msa0763350:CDS |
| GATATCCGCCTCTCTGGCGA+TGG | 0.494884 | 5_2:+22528044 | Msa0763350:CDS |
| TCAGATTAGCAAAATCAAGC+TGG | 0.494898 | 5_2:+22527662 | Msa0763350:CDS |
| GTACTAGGAGAACGGGTTGT+GGG | 0.495251 | 5_2:+22527621 | Msa0763350:CDS |
| AATGGCGGAATTCCGGTAAC+CGG | 0.495289 | 5_2:-22523757 | None:intergenic |
| AACCGGAGCGAGGATGAAGA+TGG | 0.499257 | 5_2:-22523740 | None:intergenic |
| GATATCAGGCCTTCCAAAGA+TGG | 0.500822 | 5_2:-22528027 | None:intergenic |
| TAGTGTTTGGCATTGTAAGA+TGG | 0.507904 | 5_2:-22526531 | None:intergenic |
| AGTCACTTATCTCTGGTACT+AGG | 0.518341 | 5_2:+22527606 | Msa0763350:CDS |
| TCAAATTGGAGAGGAGGAGA+AGG | 0.523972 | 5_2:-22526627 | None:intergenic |
| GATACAGAGTCACTTATCTC+TGG | 0.524948 | 5_2:+22527599 | Msa0763350:CDS |
| GTCACCAGTTGGTCAGCTGT+TGG | 0.529662 | 5_2:+22526650 | Msa0763350:CDS |
| AAGTGAAAGAACTTCATCAT+TGG | 0.547625 | 5_2:-22528081 | None:intergenic |
| TTATGTGACGCAGTTGGATG+CGG | 0.547849 | 5_2:+22527935 | Msa0763350:CDS |
| GTCAGGATAGATCCTAATCA+AGG | 0.555455 | 5_2:-22527847 | None:intergenic |
| CCCTCTACCTCGAAAACTGT+AGG | 0.561938 | 5_2:-22526562 | None:intergenic |
| CCTCTACCTCGAAAACTGTA+GGG | 0.565780 | 5_2:-22526561 | None:intergenic |
| CACTTGCTCATTAGGATCCG+AGG | 0.565795 | 5_2:-22527514 | None:intergenic |
| GAATCCCAGAGCTTGTTTGG+TGG | 0.566609 | 5_2:-22527819 | None:intergenic |
| CTCCAATTTGAGTCACCAGT+TGG | 0.568776 | 5_2:+22526639 | Msa0763350:CDS |
| CAGATTAGCAAAATCAAGCT+GGG | 0.569243 | 5_2:+22527663 | Msa0763350:CDS |
| AAACTCAGGCCATCTTTGGA+AGG | 0.573455 | 5_2:+22528018 | Msa0763350:CDS |
| ATTGATTGAAAAGCAAACTC+AGG | 0.576005 | 5_2:+22528004 | Msa0763350:CDS |
| AGAAGCTGTTCATTCTTCAG+AGG | 0.579126 | 5_2:+22527566 | Msa0763350:CDS |
| ATCGCCACCAAACAAGCTCT+GGG | 0.579787 | 5_2:+22527815 | Msa0763350:CDS |
| AAGCATAGTCAAGCCTGAGA+AGG | 0.589966 | 5_2:-22528105 | None:intergenic |
| CTCGGATCCTAATGAGCAAG+TGG | 0.590610 | 5_2:+22527515 | Msa0763350:CDS |
| TTTCAACTTGAGAGGTCAGT+GGG | 0.591645 | 5_2:+22527744 | Msa0763350:CDS |
| ACTTGCTACTGTACGCTCCA+AGG | 0.597395 | 5_2:+22527971 | Msa0763350:CDS |
| TATCTCTGGTACTAGGAGAA+CGG | 0.602653 | 5_2:+22527613 | Msa0763350:CDS |
| ATGAACGCTTTCAACTTGAG+AGG | 0.604719 | 5_2:+22527736 | Msa0763350:CDS |
| TCGAACCATCGCCAGAGAGG+CGG | 0.606436 | 5_2:-22528049 | None:intergenic |
| ATCTGAATAATTGTCTGGAG+AGG | 0.609906 | 5_2:-22527645 | None:intergenic |
| GGTGACTCAAATTGGAGAGG+AGG | 0.611408 | 5_2:-22526633 | None:intergenic |
| TGCAATCAGCGACGTTATGG+TGG | 0.617104 | 5_2:+22523712 | Msa0763350:CDS |
| AGTGCATTAGGTATAACTAC+AGG | 0.617957 | 5_2:+22528375 | Msa0763350:three_prime_UTR |
| CTTTCAACTTGAGAGGTCAG+TGG | 0.623337 | 5_2:+22527743 | Msa0763350:CDS |
| TGTGACGCAGTTGGATGCGG+AGG | 0.632757 | 5_2:+22527938 | Msa0763350:CDS |
| TGTTTGGCATTGTAAGATGG+AGG | 0.639681 | 5_2:-22526528 | None:intergenic |
| CGTCAGAAGAATGGAAATGG+CGG | 0.651417 | 5_2:-22523772 | None:intergenic |
| GAATTCCGGTAACCGGAGCG+AGG | 0.657621 | 5_2:-22523750 | None:intergenic |
| GATGACATGAATACTGGTGA+AGG | 0.657750 | 5_2:+22527891 | Msa0763350:CDS |
| GAGAGATTATGTGACGCAGT+TGG | 0.659539 | 5_2:+22527929 | Msa0763350:CDS |
| CAATCGAACCATCGCCAGAG+AGG | 0.664592 | 5_2:-22528052 | None:intergenic |
| AGGATCTATCCTGACGACGA+AGG | 0.680431 | 5_2:+22527855 | Msa0763350:CDS |
| GTCAGTGGGAACACTTACAC+AGG | 0.687918 | 5_2:+22527758 | Msa0763350:CDS |
| ACTGGTGACTCAAATTGGAG+AGG | 0.690306 | 5_2:-22526636 | None:intergenic |
| TTTCGTGACTCTGAAGAACA+CGG | 0.692681 | 5_2:-22523538 | None:intergenic |
| AGAATCGTCTACATCATACG+AGG | 0.755987 | 5_2:+22526764 | Msa0763350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTTTTTTTGTG+AGG | - | chr5_2:22524271-22524290 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTATCAAATTAAA+TGG | + | chr5_2:22525571-22525590 | Msa0763350:intron | 10.0% |
| !! | TACAAAATATTGTGAAATAA+CGG | + | chr5_2:22524622-22524641 | Msa0763350:intron | 15.0% |
| !!! | TTAAAATTTTTTGTTTGCAA+AGG | + | chr5_2:22524784-22524803 | Msa0763350:intron | 15.0% |
| !! | AGATATATAAAAAACTACAA+TGG | - | chr5_2:22524842-22524861 | None:intergenic | 15.0% |
| !! | TATTATCAATGTTTATATCA+TGG | + | chr5_2:22525034-22525053 | Msa0763350:intron | 15.0% |
| !! | CTATTTAGTACAAAATATTA+TGG | + | chr5_2:22525488-22525507 | Msa0763350:intron | 15.0% |
| !! | TGATTTAATTCATGTATTTA+TGG | + | chr5_2:22525612-22525631 | Msa0763350:intron | 15.0% |
| !! | TACAAAATATTATGAAATAG+TGG | + | chr5_2:22525787-22525806 | Msa0763350:intron | 15.0% |
| !!! | AAAACAATTTTTAAGCTTAA+GGG | - | chr5_2:22526034-22526053 | None:intergenic | 15.0% |
| !!! | AATTGTTTTTATGTATCTTT+TGG | + | chr5_2:22526071-22526090 | Msa0763350:intron | 15.0% |
| !!! | ACTACACAATTTTTATTAAT+AGG | + | chr5_2:22526129-22526148 | Msa0763350:intron | 15.0% |
| !! | TTACTATACTTACTTATAAA+GGG | - | chr5_2:22526793-22526812 | None:intergenic | 15.0% |
| !! | ATTACTATACTTACTTATAA+AGG | - | chr5_2:22526794-22526813 | None:intergenic | 15.0% |
| !! | GAAAACTTAAAAAAATCAAA+GGG | + | chr5_2:22526861-22526880 | Msa0763350:intron | 15.0% |
| !!! | GTTATTTGTTATTTAGTAAT+TGG | + | chr5_2:22527332-22527351 | Msa0763350:intron | 15.0% |
| !!! | AATCTTTAATTGTCGATTAT+GGG | - | chr5_2:22523878-22523897 | None:intergenic | 20.0% |
| !!! | TAATCTTTAATTGTCGATTA+TGG | - | chr5_2:22523879-22523898 | None:intergenic | 20.0% |
| !! | TAAAATCTGTATAAAGTTTG+AGG | + | chr5_2:22523905-22523924 | Msa0763350:intron | 20.0% |
| !! | TTAACTTTCTGTTAGAAATT+AGG | + | chr5_2:22524010-22524029 | Msa0763350:intron | 20.0% |
| !! | TAACTTTCTGTTAGAAATTA+GGG | + | chr5_2:22524011-22524030 | Msa0763350:intron | 20.0% |
| !!! | GATATTTTAATAAGCTATCT+TGG | - | chr5_2:22524169-22524188 | None:intergenic | 20.0% |
| !! | TTCCTAATATTTACATTTGA+AGG | + | chr5_2:22524416-22524435 | Msa0763350:intron | 20.0% |
| !! | TACCTTCAAATGTAAATATT+AGG | - | chr5_2:22524421-22524440 | None:intergenic | 20.0% |
| !! | ACTACACAATCTTTATTAAT+AGG | + | chr5_2:22524872-22524891 | Msa0763350:intron | 20.0% |
| !!! | ATTGATAATAAGTTATTCTG+TGG | - | chr5_2:22525024-22525043 | None:intergenic | 20.0% |
| !!! | GTTAATTATATTGATTCACA+AGG | + | chr5_2:22525382-22525401 | Msa0763350:intron | 20.0% |
| !!! | GTTTAGTTCAAATTAAATAG+CGG | + | chr5_2:22525534-22525553 | Msa0763350:intron | 20.0% |
| !!! | GTTAATTATATTGATTCAGA+AGG | + | chr5_2:22525668-22525687 | Msa0763350:intron | 20.0% |
| !!! | CAAAACAATTTTTAAGCTTA+AGG | - | chr5_2:22526035-22526054 | None:intergenic | 20.0% |
| !!! | CACAATTTTTATTAATAGGT+AGG | + | chr5_2:22526133-22526152 | Msa0763350:intron | 20.0% |
| !!! | TTTTGCTTCTTCTTTTTTTT+TGG | + | chr5_2:22526401-22526420 | Msa0763350:intron | 20.0% |
| !!! | TAAAATGTATGTCATTTTGT+TGG | + | chr5_2:22526451-22526470 | Msa0763350:intron | 20.0% |
| !! | GGAAAACTTAAAAAAATCAA+AGG | + | chr5_2:22526860-22526879 | Msa0763350:intron | 20.0% |
| !!! | TTGAATTTTTCTATTGTTCT+AGG | + | chr5_2:22526938-22526957 | Msa0763350:intron | 20.0% |
| !! | TTCTTACTGATATACATAAA+TGG | + | chr5_2:22527114-22527133 | Msa0763350:intron | 20.0% |
| !! | GAATATATTTGCATCAATAT+TGG | + | chr5_2:22527310-22527329 | Msa0763350:intron | 20.0% |
| !!! | GCTTTTTAAATCTGAATTTT+AGG | + | chr5_2:22527373-22527392 | Msa0763350:intron | 20.0% |
| !!! | TTTTAAATCTGAATTTTAGG+AGG | + | chr5_2:22527376-22527395 | Msa0763350:intron | 20.0% |
| !!! | ATAACACTTTTGAGATTGTT+TGG | + | chr5_2:22524079-22524098 | Msa0763350:intron | 25.0% |
| !!! | TAACACTTTTGAGATTGTTT+GGG | + | chr5_2:22524080-22524099 | Msa0763350:intron | 25.0% |
| ! | ATAAACTGTTTATCCAAACA+AGG | + | chr5_2:22524309-22524328 | Msa0763350:intron | 25.0% |
| ! | AATATTAGGAAATGAAACTC+AGG | - | chr5_2:22524407-22524426 | None:intergenic | 25.0% |
| ! | TTTGTGATGTCTCAAAATTT+AGG | + | chr5_2:22524456-22524475 | Msa0763350:intron | 25.0% |
| !! | TCTCAAAATTTAGGATAAGT+TGG | + | chr5_2:22524465-22524484 | Msa0763350:intron | 25.0% |
| ! | ATAAATGATTCCTATACTGT+AGG | + | chr5_2:22524493-22524512 | Msa0763350:intron | 25.0% |
| ! | TGTTGTGTATTGGAATTTAT+CGG | + | chr5_2:22524654-22524673 | Msa0763350:intron | 25.0% |
| ! | CACAATCTTTATTAATAGGT+AGG | + | chr5_2:22524876-22524895 | Msa0763350:intron | 25.0% |
| ! | CTAAAACATCAGAAATAGAT+AGG | - | chr5_2:22524913-22524932 | None:intergenic | 25.0% |
| !!! | TTGCACAATAAAGTTTGTTA+AGG | + | chr5_2:22525089-22525108 | Msa0763350:intron | 25.0% |
| !!! | TCAAACTATTTCTTCTTTTG+AGG | + | chr5_2:22525178-22525197 | Msa0763350:intron | 25.0% |
| ! | TTGTACTAAATAGTGTATCA+CGG | - | chr5_2:22525481-22525500 | None:intergenic | 25.0% |
| ! | GTACTAAATACAATAGAGTA+CGG | - | chr5_2:22525770-22525789 | None:intergenic | 25.0% |
| !!! | TATTTTGTGGAAGTATGTAA+TGG | - | chr5_2:22526224-22526243 | None:intergenic | 25.0% |
| !!! | ACTGATGATAAGTTATTTTG+TGG | - | chr5_2:22526237-22526256 | None:intergenic | 25.0% |
| ! | TAAACCATGGTAATCTATAA+AGG | - | chr5_2:22526362-22526381 | None:intergenic | 25.0% |
| !!! | CGATTTTTTATTCATGAGTA+CGG | - | chr5_2:22526898-22526917 | None:intergenic | 25.0% |
| ! | TACTCATGAATAAAAAATCG+TGG | + | chr5_2:22526898-22526917 | Msa0763350:intron | 25.0% |
| ! | TGATGCAAATATATTCTACT+TGG | - | chr5_2:22527306-22527325 | None:intergenic | 25.0% |
| ! | TCTAACTTAAACTCTTGATT+TGG | - | chr5_2:22527549-22527568 | None:intergenic | 25.0% |
| !! | TGTATGGATATTTTCTCAAA+CGG | + | chr5_2:22527709-22527728 | Msa0763350:CDS | 25.0% |
| ! | TAGAATTGCAATCAATTCAT+TGG | - | chr5_2:22528281-22528300 | None:intergenic | 25.0% |
| ! | AATTGATTGCAATTCTAAAC+AGG | + | chr5_2:22528284-22528303 | Msa0763350:three_prime_UTR | 25.0% |
| ! | GATAATAATCTTCTCATCAA+TGG | + | chr5_2:22528397-22528416 | Msa0763350:three_prime_UTR | 25.0% |
| TCTTTCAACTGGATTTCTTA+AGG | + | chr5_2:22523805-22523824 | Msa0763350:CDS | 30.0% | |
| TCTGTATAAAGTTTGAGGAT+AGG | + | chr5_2:22523910-22523929 | Msa0763350:intron | 30.0% | |
| TCAATTAAGTCAATCCAAAC+AGG | - | chr5_2:22524037-22524056 | None:intergenic | 30.0% | |
| GAAATAACTAAGACCTTGTT+TGG | - | chr5_2:22524325-22524344 | None:intergenic | 30.0% | |
| !! | CAAGGTCTTAGTTATTTCTA+TGG | + | chr5_2:22524327-22524346 | Msa0763350:intron | 30.0% |
| !!! | TTTTGAGACATCACAAAACT+TGG | - | chr5_2:22524453-22524472 | None:intergenic | 30.0% |
| TGAATCAATACCTACAGTAT+AGG | - | chr5_2:22524506-22524525 | None:intergenic | 30.0% | |
| GCTAAAGAGAACAAAATAGT+TGG | - | chr5_2:22524764-22524783 | None:intergenic | 30.0% | |
| ! | ATACAAGCACCCAATTTTAA+TGG | - | chr5_2:22524974-22524993 | None:intergenic | 30.0% |
| GCTTCGTTTATAGATTAGTA+TGG | + | chr5_2:22525143-22525162 | Msa0763350:intron | 30.0% | |
| TTCTCTGCAAAATTCGATTA+TGG | - | chr5_2:22525360-22525379 | None:intergenic | 30.0% | |
| !! | TTATATTGATTCAGAAGGCT+TGG | + | chr5_2:22525673-22525692 | Msa0763350:intron | 30.0% |
| GAAAAATGCATAGTCAATGT+AGG | - | chr5_2:22525999-22526018 | None:intergenic | 30.0% | |
| AGCTTAAGGGAAAAAAAAGT+TGG | - | chr5_2:22526021-22526040 | None:intergenic | 30.0% | |
| GTGTAGTTATGAGTTATAGA+TGG | - | chr5_2:22526116-22526135 | None:intergenic | 30.0% | |
| ! | GAAGTATGTAATGGAGAAAA+GGG | - | chr5_2:22526215-22526234 | None:intergenic | 30.0% |
| TTTGCAAAGACAATAAACCA+TGG | - | chr5_2:22526375-22526394 | None:intergenic | 30.0% | |
| !!! | TGCTTCTTCTTTTTTTTTGG+AGG | + | chr5_2:22526404-22526423 | Msa0763350:intron | 30.0% |
| !! | TTTTTGGAGGAATTTCAAAC+TGG | + | chr5_2:22526417-22526436 | Msa0763350:intron | 30.0% |
| !!! | AATGTATGTCATTTTGTTGG+AGG | + | chr5_2:22526454-22526473 | Msa0763350:intron | 30.0% |
| TGCTAAAAACAAATGAGGAT+GGG | - | chr5_2:22526691-22526710 | None:intergenic | 30.0% | |
| TTGCTAAAAACAAATGAGGA+TGG | - | chr5_2:22526692-22526711 | None:intergenic | 30.0% | |
| ATGGTTGCTAAAAACAAATG+AGG | - | chr5_2:22526696-22526715 | None:intergenic | 30.0% | |
| AAATCATGTGAAAGAAGGAA+AGG | - | chr5_2:22526817-22526836 | None:intergenic | 30.0% | |
| TAGTCAAATCATGTGAAAGA+AGG | - | chr5_2:22526822-22526841 | None:intergenic | 30.0% | |
| !!! | TGAAAAAAGCCATGCTTTTT+TGG | + | chr5_2:22527161-22527180 | Msa0763350:intron | 30.0% |
| GTAGTTTATCCAAAAAAGCA+TGG | - | chr5_2:22527173-22527192 | None:intergenic | 30.0% | |
| !! | ACTACTTTTGAAAGTTTGTG+TGG | + | chr5_2:22527188-22527207 | Msa0763350:intron | 30.0% |
| TGCTAATCTGAATAATTGTC+TGG | - | chr5_2:22527653-22527672 | None:intergenic | 30.0% | |
| ! | GTATGGATATTTTCTCAAAC+GGG | + | chr5_2:22527710-22527729 | Msa0763350:CDS | 30.0% |
| AATCAATGATATAGCTTCCT+TGG | - | chr5_2:22527991-22528010 | None:intergenic | 30.0% | |
| ATTGATTGAAAAGCAAACTC+AGG | + | chr5_2:22528004-22528023 | Msa0763350:CDS | 30.0% | |
| AAGTGAAAGAACTTCATCAT+TGG | - | chr5_2:22528084-22528103 | None:intergenic | 30.0% | |
| !! | TTGCTTTTGGATCATTCTTA+TGG | + | chr5_2:22528141-22528160 | Msa0763350:CDS | 30.0% |
| ! | TGCTTTTGGATCATTCTTAT+GGG | + | chr5_2:22528142-22528161 | Msa0763350:CDS | 30.0% |
| TTTAGCAAGAAAAGGATACT+TGG | - | chr5_2:22528189-22528208 | None:intergenic | 30.0% | |
| GTCTTCTATTTAGCAAGAAA+AGG | - | chr5_2:22528197-22528216 | None:intergenic | 30.0% | |
| TACTACATTTCTCATGTTTG+TGG | - | chr5_2:22528344-22528363 | None:intergenic | 30.0% | |
| AAATGTATGTACAGTGCATT+AGG | + | chr5_2:22528363-22528382 | Msa0763350:three_prime_UTR | 30.0% | |
| ATAGCATCAATGCAAGTTTC+AGG | + | chr5_2:22523686-22523705 | Msa0763350:exon | 35.0% | |
| GCAAAGAATGTTCTTTCAAC+TGG | + | chr5_2:22523794-22523813 | Msa0763350:CDS | 35.0% | |
| !! | TACTGTAGGTATTGATTCAC+AGG | + | chr5_2:22524507-22524526 | Msa0763350:intron | 35.0% |
| !! | ACTGTAGGTATTGATTCACA+GGG | + | chr5_2:22524508-22524527 | Msa0763350:intron | 35.0% |
| !! | GTTTTAGCGATGTTGCATAA+TGG | + | chr5_2:22524558-22524577 | Msa0763350:intron | 35.0% |
| ! | TATTTTCCACGATCCACAAT+TGG | + | chr5_2:22524693-22524712 | Msa0763350:intron | 35.0% |
| GAGAAATAGATAGTGAATGC+AGG | - | chr5_2:22524742-22524761 | None:intergenic | 35.0% | |
| ACCCTCTTCTCCATTAAAAT+TGG | + | chr5_2:22524961-22524980 | Msa0763350:intron | 35.0% | |
| !! | CCCAATTTTAATGGAGAAGA+GGG | - | chr5_2:22524965-22524984 | None:intergenic | 35.0% |
| CCCTCTTCTCCATTAAAATT+GGG | + | chr5_2:22524962-22524981 | Msa0763350:intron | 35.0% | |
| !! | ACCCAATTTTAATGGAGAAG+AGG | - | chr5_2:22524966-22524985 | None:intergenic | 35.0% |
| ACTTTATTGTGCAAGTTGCA+AGG | - | chr5_2:22525083-22525102 | None:intergenic | 35.0% | |
| !!! | ATGCATGTCATTTTGCGATA+TGG | + | chr5_2:22525229-22525248 | Msa0763350:intron | 35.0% |
| AGTGTCTCACTTAAAGTTGA+AGG | + | chr5_2:22525326-22525345 | Msa0763350:intron | 35.0% | |
| ACTATAGCACTGTTGTGTAT+CGG | + | chr5_2:22525820-22525839 | Msa0763350:intron | 35.0% | |
| ! | TGTATCTTTTGGATCTCTGA+TGG | + | chr5_2:22526082-22526101 | Msa0763350:intron | 35.0% |
| TCAAAACATCAGAAATAGGC+AGG | - | chr5_2:22526170-22526189 | None:intergenic | 35.0% | |
| AGGCTCAAAACATCAGAAAT+AGG | - | chr5_2:22526174-22526193 | None:intergenic | 35.0% | |
| ! | GGAAGTATGTAATGGAGAAA+AGG | - | chr5_2:22526216-22526235 | None:intergenic | 35.0% |
| GCTTCCTTTATAGATTACCA+TGG | + | chr5_2:22526355-22526374 | Msa0763350:intron | 35.0% | |
| GGTTTATTGTCTTTGCAAAC+TGG | + | chr5_2:22526376-22526395 | Msa0763350:intron | 35.0% | |
| TAGTGTTTGGCATTGTAAGA+TGG | - | chr5_2:22526534-22526553 | None:intergenic | 35.0% | |
| TGTAGACGATTCTTCTTTGT+TGG | - | chr5_2:22526757-22526776 | None:intergenic | 35.0% | |
| TTTGACTAGAACTAGCTATG+TGG | + | chr5_2:22526834-22526853 | Msa0763350:intron | 35.0% | |
| ! | CACATGAAGACTTTTAGTAC+TGG | - | chr5_2:22526998-22527017 | None:intergenic | 35.0% |
| ! | CCTGCACATTCAATGTTTTA+GGG | + | chr5_2:22527039-22527058 | Msa0763350:intron | 35.0% |
| !! | CTGCACATTCAATGTTTTAG+GGG | + | chr5_2:22527040-22527059 | Msa0763350:intron | 35.0% |
| !!! | TGGCTTTTTTCATACCACTA+AGG | - | chr5_2:22527153-22527172 | None:intergenic | 35.0% |
| GTGTGTGTGACTTAAAAAGA+AGG | + | chr5_2:22527210-22527229 | Msa0763350:intron | 35.0% | |
| AGTCGTGAGTAATATACGAA+TGG | + | chr5_2:22527234-22527253 | Msa0763350:intron | 35.0% | |
| ACGAATGGAAAAACGAAACT+TGG | + | chr5_2:22527249-22527268 | Msa0763350:intron | 35.0% | |
| GTTCTTAGTTAGCATGTGTT+TGG | + | chr5_2:22527277-22527296 | Msa0763350:intron | 35.0% | |
| CATAAATCCACTTGCTCATT+AGG | - | chr5_2:22527525-22527544 | None:intergenic | 35.0% | |
| ! | CTAATGAGCAAGTGGATTTA+TGG | + | chr5_2:22527523-22527542 | Msa0763350:CDS | 35.0% |
| ATCTGAATAATTGTCTGGAG+AGG | - | chr5_2:22527648-22527667 | None:intergenic | 35.0% | |
| TCAGATTAGCAAAATCAAGC+TGG | + | chr5_2:22527662-22527681 | Msa0763350:CDS | 35.0% | |
| CAGATTAGCAAAATCAAGCT+GGG | + | chr5_2:22527663-22527682 | Msa0763350:CDS | 35.0% | |
| TACGCTGCTTCAATAATGTA+TGG | + | chr5_2:22527693-22527712 | Msa0763350:CDS | 35.0% | |
| CGACGAAGGTTATTATGAAA+TGG | + | chr5_2:22527869-22527888 | Msa0763350:CDS | 35.0% | |
| GAAATGGATGACATGAATAC+TGG | + | chr5_2:22527885-22527904 | Msa0763350:CDS | 35.0% | |
| !!! | GTTTTGGAATCTGTTGCTTT+TGG | + | chr5_2:22528128-22528147 | Msa0763350:CDS | 35.0% |
| AGTGCATTAGGTATAACTAC+AGG | + | chr5_2:22528375-22528394 | Msa0763350:three_prime_UTR | 35.0% | |
| ! | TTTCGTGACTCTGAAGAACA+CGG | - | chr5_2:22523541-22523560 | None:intergenic | 40.0% |
| TTGCGTCAGAAGAATGGAAA+TGG | - | chr5_2:22523778-22523797 | None:intergenic | 40.0% | |
| CATTCTTTGCGTCAGAAGAA+TGG | - | chr5_2:22523784-22523803 | None:intergenic | 40.0% | |
| GTTAGAAATTAGGGCCTGTT+TGG | + | chr5_2:22524020-22524039 | Msa0763350:intron | 40.0% | |
| GCTATAGCACTGTTGTGTAT+TGG | + | chr5_2:22524644-22524663 | Msa0763350:intron | 40.0% | |
| TTGTGGATCGTGGAAAATAG+CGG | - | chr5_2:22524692-22524711 | None:intergenic | 40.0% | |
| CAAGGCAACTAACAAGAAGT+AGG | - | chr5_2:22525065-22525084 | None:intergenic | 40.0% | |
| ATAACAGCTATAGCTCAAGC+TGG | + | chr5_2:22525512-22525531 | Msa0763350:intron | 40.0% | |
| ! | GGAAGCTCAGTGTTGTTAAA+TGG | + | chr5_2:22525694-22525713 | Msa0763350:intron | 40.0% |
| GATACACAACAGTGCTATAG+TGG | - | chr5_2:22525821-22525840 | None:intergenic | 40.0% | |
| ATACACAGCAGTTGCTATAG+CGG | - | chr5_2:22525910-22525929 | None:intergenic | 40.0% | |
| CTATAGCAACTGCTGTGTAT+TGG | + | chr5_2:22525910-22525929 | Msa0763350:intron | 40.0% | |
| CAATTGCAGATTGCGGAAAA+TGG | - | chr5_2:22525951-22525970 | None:intergenic | 40.0% | |
| ! | CATTTTCCGCAATCTGCAAT+TGG | + | chr5_2:22525949-22525968 | Msa0763350:intron | 40.0% |
| GTGTTACCAATTGCAGATTG+CGG | - | chr5_2:22525958-22525977 | None:intergenic | 40.0% | |
| ! | TGCAATTGGTAACACTGTGT+AGG | + | chr5_2:22525963-22525982 | Msa0763350:intron | 40.0% |
| GGTTCAAGAACAAAACAGAG+AGG | - | chr5_2:22526194-22526213 | None:intergenic | 40.0% | |
| ACTTCACTGTGCAAGTTGTA+AGG | - | chr5_2:22526296-22526315 | None:intergenic | 40.0% | |
| TGTTTGGCATTGTAAGATGG+AGG | - | chr5_2:22526531-22526550 | None:intergenic | 40.0% | |
| GTAGGGTTCATTGTAGTGTT+TGG | - | chr5_2:22526547-22526566 | None:intergenic | 40.0% | |
| ! | AATGAACCCTACAGTTTTCG+AGG | + | chr5_2:22526555-22526574 | Msa0763350:CDS | 40.0% |
| TTTCTCTAGCTGCTGATCAA+TGG | - | chr5_2:22526715-22526734 | None:intergenic | 40.0% | |
| AGAATCGTCTACATCATACG+AGG | + | chr5_2:22526764-22526783 | Msa0763350:CDS | 40.0% | |
| ! | GCCTGCACATTCAATGTTTT+AGG | + | chr5_2:22527038-22527057 | Msa0763350:intron | 40.0% |
| CCCTAAAACATTGAATGTGC+AGG | - | chr5_2:22527042-22527061 | None:intergenic | 40.0% | |
| GTTAATGATCGAAGCCTTAG+TGG | + | chr5_2:22527136-22527155 | Msa0763350:intron | 40.0% | |
| ! | GAAAGAAAAGCGCACAACAT+TGG | + | chr5_2:22527416-22527435 | Msa0763350:CDS | 40.0% |
| ! | CCGAGGTTGCTGATATTTTT+GGG | - | chr5_2:22527500-22527519 | None:intergenic | 40.0% |
| CCCAAAAATATCAGCAACCT+CGG | + | chr5_2:22527497-22527516 | Msa0763350:CDS | 40.0% | |
| ! | TCCGAGGTTGCTGATATTTT+TGG | - | chr5_2:22527501-22527520 | None:intergenic | 40.0% |
| AGAAGCTGTTCATTCTTCAG+AGG | + | chr5_2:22527566-22527585 | Msa0763350:CDS | 40.0% | |
| GATACAGAGTCACTTATCTC+TGG | + | chr5_2:22527599-22527618 | Msa0763350:CDS | 40.0% | |
| AGTCACTTATCTCTGGTACT+AGG | + | chr5_2:22527606-22527625 | Msa0763350:CDS | 40.0% | |
| TATCTCTGGTACTAGGAGAA+CGG | + | chr5_2:22527613-22527632 | Msa0763350:CDS | 40.0% | |
| ATGAACGCTTTCAACTTGAG+AGG | + | chr5_2:22527736-22527755 | Msa0763350:CDS | 40.0% | |
| TTTCAACTTGAGAGGTCAGT+GGG | + | chr5_2:22527744-22527763 | Msa0763350:CDS | 40.0% | |
| GGAACACTTACACAGGATTT+GGG | + | chr5_2:22527765-22527784 | Msa0763350:CDS | 40.0% | |
| GGGATTCAGATTCCTTGATT+AGG | + | chr5_2:22527835-22527854 | Msa0763350:CDS | 40.0% | |
| GTCAGGATAGATCCTAATCA+AGG | - | chr5_2:22527850-22527869 | None:intergenic | 40.0% | |
| TCATAATAACCTTCGTCGTC+AGG | - | chr5_2:22527867-22527886 | None:intergenic | 40.0% | |
| GATGACATGAATACTGGTGA+AGG | + | chr5_2:22527891-22527910 | Msa0763350:CDS | 40.0% | |
| GTTCTTTCACTTACCTTCTC+AGG | + | chr5_2:22528092-22528111 | Msa0763350:CDS | 40.0% | |
| ! | AGGCTTGACTATGCTTGTTT+TGG | + | chr5_2:22528112-22528131 | Msa0763350:CDS | 40.0% |
| ! | GAATGGAAATGGCGGAATTC+CGG | - | chr5_2:22523767-22523786 | None:intergenic | 45.0% |
| CGTCAGAAGAATGGAAATGG+CGG | - | chr5_2:22523775-22523794 | None:intergenic | 45.0% | |
| GAGACATCACAAAACTTGGC+AGG | - | chr5_2:22524449-22524468 | None:intergenic | 45.0% | |
| GTGTTACCAATTGTGGATCG+TGG | - | chr5_2:22524702-22524721 | None:intergenic | 45.0% | |
| CCTGCAAGTGTTACCAATTG+TGG | - | chr5_2:22524709-22524728 | None:intergenic | 45.0% | |
| ! | CCACAATTGGTAACACTTGC+AGG | + | chr5_2:22524706-22524725 | Msa0763350:intron | 45.0% |
| GCTATAGTGATGTTGCACAG+TGG | + | chr5_2:22525432-22525451 | Msa0763350:intron | 45.0% | |
| TTGCAGATTGCGGAAAATGG+CGG | - | chr5_2:22525948-22525967 | None:intergenic | 45.0% | |
| GTAACACTGTGTAGGCTACA+AGG | + | chr5_2:22525971-22525990 | Msa0763350:intron | 45.0% | |
| CCTCTACCTCGAAAACTGTA+GGG | - | chr5_2:22526564-22526583 | None:intergenic | 45.0% | |
| !! | CCTACAGTTTTCGAGGTAGA+GGG | + | chr5_2:22526562-22526581 | Msa0763350:CDS | 45.0% |
| TCAAATTGGAGAGGAGGAGA+AGG | - | chr5_2:22526630-22526649 | None:intergenic | 45.0% | |
| ACTGGTGACTCAAATTGGAG+AGG | - | chr5_2:22526639-22526658 | None:intergenic | 45.0% | |
| CTCCAATTTGAGTCACCAGT+TGG | + | chr5_2:22526639-22526658 | Msa0763350:CDS | 45.0% | |
| GACCAACTGGTGACTCAAAT+TGG | - | chr5_2:22526644-22526663 | None:intergenic | 45.0% | |
| CTAGAACTAGCTATGTGGAG+AGG | + | chr5_2:22526839-22526858 | Msa0763350:intron | 45.0% | |
| AATCGTGGAAGCTCTGCTTA+TGG | + | chr5_2:22526913-22526932 | Msa0763350:intron | 45.0% | |
| ATCTCTGGTACTAGGAGAAC+GGG | + | chr5_2:22527614-22527633 | Msa0763350:CDS | 45.0% | |
| CTTTCAACTTGAGAGGTCAG+TGG | + | chr5_2:22527743-22527762 | Msa0763350:CDS | 45.0% | |
| GGGAACACTTACACAGGATT+TGG | + | chr5_2:22527764-22527783 | Msa0763350:CDS | 45.0% | |
| ! | TCTGAATCCCAGAGCTTGTT+TGG | - | chr5_2:22527825-22527844 | None:intergenic | 45.0% |
| ACTGGTGAAGGCAAATCATC+TGG | + | chr5_2:22527903-22527922 | Msa0763350:CDS | 45.0% | |
| GAGAGATTATGTGACGCAGT+TGG | + | chr5_2:22527929-22527948 | Msa0763350:CDS | 45.0% | |
| TTATGTGACGCAGTTGGATG+CGG | + | chr5_2:22527935-22527954 | Msa0763350:CDS | 45.0% | |
| AAGCAAACTCAGGCCATCTT+TGG | + | chr5_2:22528014-22528033 | Msa0763350:CDS | 45.0% | |
| AAACTCAGGCCATCTTTGGA+AGG | + | chr5_2:22528018-22528037 | Msa0763350:CDS | 45.0% | |
| GATATCAGGCCTTCCAAAGA+TGG | - | chr5_2:22528030-22528049 | None:intergenic | 45.0% | |
| AAGCATAGTCAAGCCTGAGA+AGG | - | chr5_2:22528108-22528127 | None:intergenic | 45.0% | |
| TGCTGCAATCAGCGACGTTA+TGG | + | chr5_2:22523709-22523728 | Msa0763350:CDS | 50.0% | |
| TGCAATCAGCGACGTTATGG+TGG | + | chr5_2:22523712-22523731 | Msa0763350:CDS | 50.0% | |
| TTCCATCTTCATCCTCGCTC+CGG | + | chr5_2:22523738-22523757 | Msa0763350:CDS | 50.0% | |
| ! | AATGGCGGAATTCCGGTAAC+CGG | - | chr5_2:22523760-22523779 | None:intergenic | 50.0% |
| AGTTGCTATAGCGGCGCTAT+AGG | - | chr5_2:22525901-22525920 | None:intergenic | 50.0% | |
| !! | CCCTACAGTTTTCGAGGTAG+AGG | + | chr5_2:22526561-22526580 | Msa0763350:CDS | 50.0% |
| CCCTCTACCTCGAAAACTGT+AGG | - | chr5_2:22526565-22526584 | None:intergenic | 50.0% | |
| GGTGACTCAAATTGGAGAGG+AGG | - | chr5_2:22526636-22526655 | None:intergenic | 50.0% | |
| TGTTCCAACAGCTGACCAAC+TGG | - | chr5_2:22526657-22526676 | None:intergenic | 50.0% | |
| CACTTGCTCATTAGGATCCG+AGG | - | chr5_2:22527517-22527536 | None:intergenic | 50.0% | |
| CTCGGATCCTAATGAGCAAG+TGG | + | chr5_2:22527515-22527534 | Msa0763350:CDS | 50.0% | |
| !! | GTACTAGGAGAACGGGTTGT+GGG | + | chr5_2:22527621-22527640 | Msa0763350:CDS | 50.0% |
| GTCAGTGGGAACACTTACAC+AGG | + | chr5_2:22527758-22527777 | Msa0763350:CDS | 50.0% | |
| ATCGCCACCAAACAAGCTCT+GGG | + | chr5_2:22527815-22527834 | Msa0763350:CDS | 50.0% | |
| ! | GAATCCCAGAGCTTGTTTGG+TGG | - | chr5_2:22527822-22527841 | None:intergenic | 50.0% |
| AGGATCTATCCTGACGACGA+AGG | + | chr5_2:22527855-22527874 | Msa0763350:CDS | 50.0% | |
| ! | ACTTGCTACTGTACGCTCCA+AGG | + | chr5_2:22527971-22527990 | Msa0763350:CDS | 50.0% |
| AACCGGAGCGAGGATGAAGA+TGG | - | chr5_2:22523743-22523762 | None:intergenic | 55.0% | |
| TTCATCCTCGCTCCGGTTAC+CGG | + | chr5_2:22523745-22523764 | Msa0763350:CDS | 55.0% | |
| GTCACCAGTTGGTCAGCTGT+TGG | + | chr5_2:22526650-22526669 | Msa0763350:CDS | 55.0% | |
| !! | GGTACTAGGAGAACGGGTTG+TGG | + | chr5_2:22527620-22527639 | Msa0763350:CDS | 55.0% |
| !! | CAGAGCTTGTTTGGTGGCGA+TGG | - | chr5_2:22527816-22527835 | None:intergenic | 55.0% |
| CATCGCCACCAAACAAGCTC+TGG | + | chr5_2:22527814-22527833 | Msa0763350:CDS | 55.0% | |
| CAATCGAACCATCGCCAGAG+AGG | - | chr5_2:22528055-22528074 | None:intergenic | 55.0% | |
| GAATTCCGGTAACCGGAGCG+AGG | - | chr5_2:22523753-22523772 | None:intergenic | 60.0% | |
| TGTGACGCAGTTGGATGCGG+AGG | + | chr5_2:22527938-22527957 | Msa0763350:CDS | 60.0% | |
| AGGCCTGATATCCGCCTCTC+TGG | + | chr5_2:22528038-22528057 | Msa0763350:CDS | 60.0% | |
| TCGCCAGAGAGGCGGATATC+AGG | - | chr5_2:22528044-22528063 | None:intergenic | 60.0% | |
| GATATCCGCCTCTCTGGCGA+TGG | + | chr5_2:22528044-22528063 | Msa0763350:CDS | 60.0% | |
| TCGAACCATCGCCAGAGAGG+CGG | - | chr5_2:22528052-22528071 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 22523518 | 22528469 | 22523518 | ID=Msa0763350;Name=Msa0763350 |
| chr5_2 | mRNA | 22523518 | 22528469 | 22523518 | ID=Msa0763350-mRNA-1;Parent=Msa0763350;Name=Msa0763350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=98|1|1|1|0.66|0.75|4|258|408 |
| chr5_2 | exon | 22523518 | 22523587 | 22523518 | ID=Msa0763350-mRNA-1:exon:9216;Parent=Msa0763350-mRNA-1 |
| chr5_2 | exon | 22523667 | 22523826 | 22523667 | ID=Msa0763350-mRNA-1:exon:9217;Parent=Msa0763350-mRNA-1 |
| chr5_2 | exon | 22526522 | 22526799 | 22526522 | ID=Msa0763350-mRNA-1:exon:9218;Parent=Msa0763350-mRNA-1 |
| chr5_2 | exon | 22527395 | 22528469 | 22527395 | ID=Msa0763350-mRNA-1:exon:9219;Parent=Msa0763350-mRNA-1 |
| chr5_2 | five_prime_UTR | 22523518 | 22523587 | 22523518 | ID=Msa0763350-mRNA-1:five_prime_utr;Parent=Msa0763350-mRNA-1 |
| chr5_2 | five_prime_UTR | 22523667 | 22523694 | 22523667 | ID=Msa0763350-mRNA-1:five_prime_utr;Parent=Msa0763350-mRNA-1 |
| chr5_2 | CDS | 22523695 | 22523826 | 22523695 | ID=Msa0763350-mRNA-1:cds;Parent=Msa0763350-mRNA-1 |
| chr5_2 | CDS | 22526522 | 22526799 | 22526522 | ID=Msa0763350-mRNA-1:cds;Parent=Msa0763350-mRNA-1 |
| chr5_2 | CDS | 22527395 | 22528211 | 22527395 | ID=Msa0763350-mRNA-1:cds;Parent=Msa0763350-mRNA-1 |
| chr5_2 | three_prime_UTR | 22528212 | 22528469 | 22528212 | ID=Msa0763350-mRNA-1:three_prime_utr;Parent=Msa0763350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
