AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0105500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105500 MtrunA17_Chr1g0160461 99.839 621 1 0 1 621 1 621 0.0 1275
Msa0105500 MtrunA17_Chr4g0044181 77.877 669 90 15 1 621 1 659 0.0 975
Msa0105500 MtrunA17_Chr6g0478431 63.281 640 180 13 1 621 1 604 0.0 759
Msa0105500 MtrunA17_Chr7g0255941 63.323 638 170 14 1 621 1 591 0.0 736
Msa0105500 MtrunA17_Chr4g0071571 58.779 655 206 12 1 621 1 625 0.0 713
Msa0105500 MtrunA17_Chr8g0393111 57.235 622 130 15 1 591 1 517 0.0 628
Msa0105500 MtrunA17_Chr1g0159341 47.943 632 213 19 1 621 1 527 2.13e-166 485
Msa0105500 MtrunA17_Chr4g0071551 74.178 213 54 1 1 212 1 213 7.42e-114 339
Msa0105500 MtrunA17_Chr2g0298971 49.402 251 102 5 1 248 1 229 4.77e-74 246
Msa0105500 MtrunA17_Chr2g0298971 39.271 247 101 5 401 600 273 517 3.57e-45 168
Msa0105500 MtrunA17_Chr4g0071561 72.727 154 42 0 444 597 163 316 2.95e-73 238
Msa0105500 MtrunA17_Chr7g0216571 67.089 158 52 0 464 621 210 367 2.32e-65 219
Msa0105500 MtrunA17_Chr7g0216571 55.696 158 70 0 1 158 12 169 2.10e-52 184
Msa0105500 MtrunA17_Chr6g0452821 63.190 163 58 1 461 621 198 360 7.52e-63 212
Msa0105500 MtrunA17_Chr6g0452821 56.329 158 68 1 1 157 1 158 6.40e-51 180
Msa0105500 MtrunA17_Chr7g0249141 53.289 152 71 0 468 619 208 359 1.09e-51 182
Msa0105500 MtrunA17_Chr7g0249141 51.613 155 75 0 1 155 1 155 3.29e-47 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105500 AT1G70940.1 74.923 646 131 13 1 621 1 640 0.0 908
Msa0105500 AT2G01420.1 74.725 637 120 14 1 621 1 612 0.0 900
Msa0105500 AT2G01420.2 74.411 637 126 13 1 621 1 616 0.0 892
Msa0105500 AT1G23080.1 73.585 636 136 12 1 621 1 619 0.0 891
Msa0105500 AT1G23080.3 72.956 636 136 11 1 621 1 615 0.0 884
Msa0105500 AT1G23080.4 72.956 636 136 11 1 621 1 615 0.0 884
Msa0105500 AT1G23080.2 70.391 537 123 11 1 522 1 516 0.0 722
Msa0105500 AT5G57090.1 58.471 667 211 11 1 621 1 647 0.0 720
Msa0105500 AT2G01420.3 72.305 538 112 13 1 522 1 517 0.0 719
Msa0105500 AT1G73590.1 59.538 650 206 12 1 621 1 622 0.0 706
Msa0105500 AT5G57090.2 55.556 567 186 11 101 621 1 547 0.0 555
Msa0105500 AT1G77110.1 48.413 630 256 15 1 621 1 570 2.99e-180 523
Msa0105500 AT1G77110.2 47.697 608 249 15 1 599 1 548 1.06e-167 489
Msa0105500 AT5G15100.1 62.805 164 61 0 458 621 204 367 8.27e-61 207
Msa0105500 AT5G15100.1 49.153 177 80 2 1 172 1 172 1.05e-44 163
Msa0105500 AT5G16530.1 54.000 150 69 0 467 616 195 344 7.25e-51 179
Msa0105500 AT5G16530.1 52.229 157 75 0 1 157 1 157 1.06e-49 176
Msa0105500 AT5G16530.2 52.229 157 75 0 1 157 1 157 3.20e-50 177
Msa0105500 AT5G16530.2 51.825 137 66 0 464 600 192 328 3.17e-43 158

Find 222 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCAAGACATTCCAATTT+TGG 0.071341 1_3:+14037438 Msa0105500:CDS
GGCTTCCATTGTTTCCTTTA+AGG 0.137518 1_3:+14037182 Msa0105500:CDS
ATCTTTAAGTGTTATCATTT+TGG 0.154954 1_3:-14036671 None:intergenic
ACAATGGAAGCCGCGGTTTC+TGG 0.173798 1_3:-14037171 None:intergenic
ACTCATTCTGTGCAAAATTT+TGG 0.176459 1_3:-14036496 None:intergenic
TTGAATTGCAGGGTTATATT+TGG 0.190580 1_3:+14041034 Msa0105500:intron
ATTATATTTAGGTCTGTTTA+TGG 0.191838 1_3:+14039829 Msa0105500:intron
CAAGTCTCATTGGTCTTATT+TGG 0.200411 1_3:+14038518 Msa0105500:CDS
TAATAGAAAATGAAGGAAAA+TGG 0.213317 1_3:-14036575 None:intergenic
CTTCCGATTGTTCCGAATTT+CGG 0.216143 1_3:-14037776 None:intergenic
ATTGCCTATACCTTTGTTAT+TGG 0.219936 1_3:-14037856 None:intergenic
CCGCGACTCCGGTGGCTTTA+GGG 0.226606 1_3:-14038396 None:intergenic
TCCGCGACTCCGGTGGCTTT+AGG 0.232306 1_3:-14038397 None:intergenic
AATCTGAAGTTCATTTGATA+TGG 0.240310 1_3:-14036865 None:intergenic
CATGATAATAATAGGTAAAA+AGG 0.253119 1_3:-14041564 None:intergenic
TGCTAGTAGCACTTTCATTA+TGG 0.257436 1_3:+14036920 Msa0105500:CDS
TCATCTTGGAATTTCTAATA+TGG 0.257757 1_3:-14041338 None:intergenic
CAAATCATTAGCCCCAAAAT+TGG 0.264008 1_3:-14037451 None:intergenic
CCTTCAAATTTCGAAGAAAA+TGG 0.266779 1_3:+14037513 Msa0105500:CDS
CTTCCTAACACTTTGGTTAT+GGG 0.267472 1_3:+14037003 Msa0105500:CDS
ACTTCCTAACACTTTGGTTA+TGG 0.272014 1_3:+14037002 Msa0105500:CDS
AACATCCGAATCGACCTTAA+AGG 0.272674 1_3:-14037196 None:intergenic
CTCAAGTGCTTCGCCGGTTT+CGG 0.282268 1_3:+14037731 Msa0105500:CDS
ATGTAGTAGAGTAGAGTAAT+TGG 0.282953 1_3:-14041073 None:intergenic
GACACGTCTCATACTCATTA+TGG 0.285664 1_3:+14038459 Msa0105500:CDS
ACAATAATCATGATAATAAT+AGG 0.297965 1_3:-14041572 None:intergenic
ATATGGAGACATTAGCATTA+TGG 0.309373 1_3:-14041321 None:intergenic
TTGAATAAGTGTTTGGATTA+CGG 0.310783 1_3:-14038498 None:intergenic
TTAGTAGTAGAGGAGAATTC+CGG 0.312645 1_3:-14037606 None:intergenic
TGATTATTCAGGTAGCTTAA+TGG 0.316996 1_3:+14037053 Msa0105500:CDS
TTTGGTCCCTTGTTGCCTTT+AGG 0.319465 1_3:+14038536 Msa0105500:CDS
GCTATGTATGGTGATTATTC+AGG 0.323216 1_3:+14037042 Msa0105500:CDS
CCTTACTGGTCCAGCAGTTA+TGG 0.341147 1_3:+14039916 Msa0105500:CDS
GAATTCGAGCCCAACTTGTT+AGG 0.341677 1_3:-14038358 None:intergenic
TTCTCACCGGATCAATGTTC+CGG 0.355844 1_3:+14036775 Msa0105500:CDS
ATGAGACTTGAATAAGTGTT+TGG 0.358805 1_3:-14038505 None:intergenic
TCGGATGTTATGTCGTTAGA+TGG 0.360086 1_3:+14037210 Msa0105500:CDS
AAGATCATAGCAACATATAA+TGG 0.361273 1_3:-14036721 None:intergenic
CCTCAACGTGTTCCGAAATT+CGG 0.365682 1_3:+14037764 Msa0105500:CDS
TATGGAGACATTAGCATTAT+GGG 0.368773 1_3:-14041320 None:intergenic
TTATGTAGAGGAAAAGAAAT+TGG 0.368887 1_3:+14041527 Msa0105500:three_prime_UTR
ATTCCCACATGCAATGATCT+TGG 0.369808 1_3:-14039861 None:intergenic
AGAGAGCATGTAACATTGTA+AGG 0.373238 1_3:+14041383 Msa0105500:three_prime_UTR
GGAAGTTACATGTTACTGTT+AGG 0.381177 1_3:+14037274 Msa0105500:CDS
CCTGCATGTAGCTATTGTTC+AGG 0.382242 1_3:+14039976 Msa0105500:CDS
AGTTAGTTAACTAGGAGTAT+AGG 0.384939 1_3:-14036534 None:intergenic
TTTGGCACCGGATACGAATT+AGG 0.387532 1_3:-14037582 None:intergenic
TATACAAATGGTTGATAGAA+AGG 0.388340 1_3:-14041474 None:intergenic
AACACTTATTCAAGTCTCAT+TGG 0.389053 1_3:+14038508 Msa0105500:CDS
GGTGGTCAAGAAAAGGAAAT+TGG 0.389811 1_3:+14038271 Msa0105500:intron
GCTGATGAACATAATCAAAA+TGG 0.390186 1_3:+14037828 Msa0105500:CDS
CTATCTTCCAAAGTATGAAT+AGG 0.391219 1_3:-14041117 None:intergenic
TTCATATAAAATTATACAAA+TGG 0.391462 1_3:-14041486 None:intergenic
CCTTGAAAATTACATCATCT+TGG 0.393042 1_3:-14041352 None:intergenic
ATACTGTCTGATGCTGGTCT+TGG 0.394410 1_3:+14038787 Msa0105500:CDS
AATAGAAAATGAAGGAAAAT+GGG 0.398762 1_3:-14036574 None:intergenic
GCCCAACTTGTTAGGTCCAT+TGG 0.399378 1_3:-14038350 None:intergenic
AGGCCAGCACTTTCCGAAAC+CGG 0.400302 1_3:-14037744 None:intergenic
GGTGCAAGTTCTCCTAGATT+CGG 0.403944 1_3:+14037534 Msa0105500:CDS
GTCTCATACTCATTATGGTT+TGG 0.406117 1_3:+14038464 Msa0105500:CDS
ATTCCCATAACCAAAGTGTT+AGG 0.414160 1_3:-14037006 None:intergenic
TGGTTCTTCAGTGTATCATT+TGG 0.415072 1_3:+14037085 Msa0105500:CDS
AAGACCAGCATCAGACAGTA+TGG 0.415534 1_3:-14038785 None:intergenic
ATGGCTATAAGATTCCTTAC+TGG 0.418097 1_3:+14039902 Msa0105500:CDS
CTACTCTACTACATTCTCCT+TGG 0.419596 1_3:+14041082 Msa0105500:CDS
GTAGAGGAGAATTCCGGGTT+TGG 0.423859 1_3:-14037600 None:intergenic
TGTTTCCTTTAAGGTCGATT+CGG 0.427917 1_3:+14037191 Msa0105500:CDS
GGTTGAAATTAGACCCTCTT+GGG 0.428239 1_3:-14037386 None:intergenic
GCCGGATAAAACCCGAATCT+AGG 0.429616 1_3:-14037546 None:intergenic
TAGTAGTAGAGGAGAATTCC+GGG 0.437495 1_3:-14037605 None:intergenic
GTGCAAGTTCTCCTAGATTC+GGG 0.439036 1_3:+14037535 Msa0105500:CDS
TTCTGTTGCTTCATTTGCCA+TGG 0.440626 1_3:+14039883 Msa0105500:CDS
GCCCCAAAATTGGAATGTCT+TGG 0.443621 1_3:-14037441 None:intergenic
TTCCCACATGCAATGATCTT+GGG 0.445777 1_3:-14039860 None:intergenic
ATTGCAGACAAAAGGTTCTC+AGG 0.450066 1_3:+14037680 Msa0105500:CDS
AGTCAAATTATATCTAGAAA+TGG 0.450786 1_3:+14041448 Msa0105500:three_prime_UTR
TTAGGCACAGTTTGCGCTGC+CGG 0.451420 1_3:-14037564 None:intergenic
TCTTCGAAATTTGAAGGTCT+AGG 0.454518 1_3:-14037507 None:intergenic
AAGGAAAATGGGAAAGAAAA+CGG 0.454640 1_3:-14036563 None:intergenic
CCTTTGTTAATTGCTATGTA+TGG 0.454996 1_3:+14037030 Msa0105500:CDS
AGGGTCTAATTTCAACCATC+AGG 0.456670 1_3:+14037392 Msa0105500:CDS
TCGCCGGTTTCGGAAAGTGC+TGG 0.458059 1_3:+14037741 Msa0105500:CDS
AAGGTGTGTCAGAGAAAGTA+GGG 0.458240 1_3:-14036399 None:intergenic
CCCAACTTGTTAGGTCCATT+GGG 0.459861 1_3:-14038349 None:intergenic
CAGGTTCAATTGCAGACAAA+AGG 0.466019 1_3:+14037672 Msa0105500:CDS
GAAGGTGTGTCAGAGAAAGT+AGG 0.466090 1_3:-14036400 None:intergenic
AAGAGGACTTCAAGTTCAAT+GGG 0.468366 1_3:+14038299 Msa0105500:CDS
GTGGAGCTCAAGTGCTTCGC+CGG 0.468410 1_3:+14037725 Msa0105500:CDS
CCTACGGTTCGGTCCGTTGG+TGG 0.474399 1_3:+14036746 Msa0105500:CDS
ATCAACACTTCCTAACACTT+TGG 0.475928 1_3:+14036996 Msa0105500:CDS
TGCTTACGCTGTACTAAGAA+TGG 0.477801 1_3:-14040913 None:intergenic
CTTCACAGGTTTAGTAGTAG+AGG 0.477907 1_3:-14037616 None:intergenic
GGAATGGCTATGTTTAGCTT+AGG 0.479154 1_3:+14038808 Msa0105500:CDS
TTCGTATCCGGTGCCAAACC+CGG 0.479487 1_3:+14037587 Msa0105500:CDS
TAGCCTACGGTTCGGTCCGT+TGG 0.480227 1_3:+14036743 Msa0105500:CDS
CCGAATTTCGGAACACGTTG+AGG 0.481444 1_3:-14037764 None:intergenic
TAGCTTAATGGTTCAAGTTG+TGG 0.483646 1_3:+14037065 Msa0105500:CDS
AAAGGAAATTGGTGGGGAAG+AGG 0.484370 1_3:+14038282 Msa0105500:CDS
GTTCATTTGATATGGATTGT+TGG 0.488470 1_3:-14036857 None:intergenic
AACTGTGCCTAATTCGTATC+CGG 0.489229 1_3:+14037575 Msa0105500:CDS
GGTTGGTTAGTTAGTTAACT+AGG 0.491382 1_3:-14036542 None:intergenic
AATTGAAGGTGGTCAAGAAA+AGG 0.491402 1_3:+14038264 Msa0105500:intron
CCCAATGGACCTAACAAGTT+GGG 0.493053 1_3:+14038349 Msa0105500:CDS
GAAGAGGACTTCAAGTTCAA+TGG 0.495292 1_3:+14038298 Msa0105500:CDS
GATGCATCAGTTGGTGATGA+TGG 0.503763 1_3:+14037252 Msa0105500:CDS
GTTGAATGGCATGTGAAGAA+AGG 0.505360 1_3:-14036617 None:intergenic
AGGAGTACTTGTAATAGTAC+TGG 0.508743 1_3:-14036461 None:intergenic
CTTGAAACTGATGCATCAGT+TGG 0.511837 1_3:+14037243 Msa0105500:CDS
TCAGCTCCAGTCAAATTTGA+CGG 0.512431 1_3:-14037342 None:intergenic
AAATTTGAAGGTCTAGGAGT+TGG 0.515304 1_3:-14037501 None:intergenic
TACGCTGTACTAAGAATGGC+TGG 0.515311 1_3:-14040909 None:intergenic
ATACAAATGGTTGATAGAAA+GGG 0.515594 1_3:-14041473 None:intergenic
GAAGCTGCTGCCATAACTGC+TGG 0.516874 1_3:-14039926 None:intergenic
CGCGACGAAGCGGTTTATAC+CGG 0.520411 1_3:-14036794 None:intergenic
TCATACTCATTATGGTTTGG+AGG 0.520930 1_3:+14038467 Msa0105500:CDS
GAGAATTCCGGGTTTGGCAC+CGG 0.521354 1_3:-14037594 None:intergenic
CTTGGAATGACAATTTCTGT+TGG 0.522627 1_3:-14041242 None:intergenic
TGGTTGAAATTAGACCCTCT+TGG 0.523061 1_3:-14037387 None:intergenic
CCCTAAAGCCACCGGAGTCG+CGG 0.523391 1_3:+14038396 Msa0105500:CDS
CCGCGACCGTCAAATTTGAC+TGG 0.525623 1_3:+14037336 Msa0105500:CDS
GTTCCGAAATTCGGAACAAT+CGG 0.530135 1_3:+14037773 Msa0105500:CDS
TCTGTCCAGTCTTCTTCTAG+AGG 0.530364 1_3:+14037477 Msa0105500:CDS
TCTATCGCCGTTGGCCTCCG+TGG 0.532052 1_3:+14039947 Msa0105500:CDS
GTCTGATGCTGGTCTTGGAA+TGG 0.532632 1_3:+14038792 Msa0105500:CDS
TTGGTCCTCTAGAAGAAGAC+TGG 0.534857 1_3:-14037482 None:intergenic
ATTTGTAATTGTAGAGTACA+AGG 0.536418 1_3:-14036347 None:intergenic
AGTAGAGTAGAGTAATTGGA+AGG 0.536719 1_3:-14041069 None:intergenic
ATTTCCATACTGTCTGATGC+TGG 0.538744 1_3:+14038781 Msa0105500:CDS
CTATCGCCGTTGGCCTCCGT+GGG 0.540857 1_3:+14039948 Msa0105500:CDS
ACCCAATGGACCTAACAAGT+TGG 0.543856 1_3:+14038348 Msa0105500:CDS
CCATAACTGCTGGACCAGTA+AGG 0.545402 1_3:-14039916 None:intergenic
GAGGGTCCCACGGAGGCCAA+CGG 0.549364 1_3:-14039954 None:intergenic
GACACTTGAATCCGCGACTC+CGG 0.551443 1_3:-14038407 None:intergenic
TCTTGGTTGATAACCCATCA+TGG 0.553358 1_3:-14037424 None:intergenic
ATGTTACATGCTCTCTCTTG+AGG 0.554694 1_3:-14041376 None:intergenic
GTGGCTTTAGGGTGGAGCTC+CGG 0.554827 1_3:-14038385 None:intergenic
AAATTTATAATAGAAAATGA+AGG 0.557862 1_3:-14036582 None:intergenic
GCAGCAGCTTCTATCGCCGT+TGG 0.558133 1_3:+14039938 Msa0105500:CDS
TTTGATGCCGCAACAACCGC+AGG 0.558725 1_3:+14037653 Msa0105500:CDS
TTTATACCGGAACATTGATC+CGG 0.563596 1_3:-14036781 None:intergenic
GATTGTTGGTTGAGATGAAG+TGG 0.564135 1_3:-14036843 None:intergenic
AAATTCGGAACAATCGGAAG+AGG 0.564770 1_3:+14037779 Msa0105500:CDS
TATGATCTTAGCCTACGGTT+CGG 0.565033 1_3:+14036735 Msa0105500:CDS
TGTCGGAAAACTCATGCCTC+CGG 0.565467 1_3:+14038426 Msa0105500:CDS
CCAGTCAAATTTGACGGTCG+CGG 0.567450 1_3:-14037336 None:intergenic
GTCAAGAAAAGGAAATTGGT+GGG 0.568661 1_3:+14038275 Msa0105500:CDS
AAAATGGGAAAGAAAACGGT+TGG 0.570567 1_3:-14036559 None:intergenic
CTTCAAGTTCAATGGGGTGA+AGG 0.574592 1_3:+14038306 Msa0105500:CDS
AATTCGGAACAATCGGAAGA+GGG 0.578362 1_3:+14037780 Msa0105500:CDS
GAGCTCCACCCTAAAGCCAC+CGG 0.581241 1_3:+14038388 Msa0105500:CDS
GAGAGCATGTAACATTGTAA+GGG 0.581953 1_3:+14041384 Msa0105500:three_prime_UTR
GAAATTAGACCCTCTTGGGG+TGG 0.582116 1_3:-14037382 None:intergenic
CAATAGGCTGCACTTCCACA+AGG 0.583775 1_3:+14040846 Msa0105500:intron
ACTTGAATCCGCGACTCCGG+TGG 0.585921 1_3:-14038404 None:intergenic
AGTTAACTAGGAGTATAGGA+AGG 0.586720 1_3:-14036530 None:intergenic
GTGGAATGAAAGGAGAGGTA+CGG 0.587057 1_3:-14036824 None:intergenic
AAGTTCAATGGGGTGAAGGT+AGG 0.588094 1_3:+14038310 Msa0105500:CDS
GAACAAGGAGAAGGACCCAA+TGG 0.588943 1_3:+14038334 Msa0105500:CDS
CTGTACTAAGAATGGCTGGA+TGG 0.589732 1_3:-14040905 None:intergenic
AGTAAGGAATCTTATAGCCA+TGG 0.592444 1_3:-14039900 None:intergenic
GGGGTGAAGGTAGGAGAACA+AGG 0.592671 1_3:+14038319 Msa0105500:CDS
ATCGACCTTAAAGGAAACAA+TGG 0.593244 1_3:-14037187 None:intergenic
CTACATGCAGGAGGGTCCCA+CGG 0.593506 1_3:-14039964 None:intergenic
CCTGAACAATAGCTACATGC+AGG 0.595131 1_3:-14039976 None:intergenic
GTAGAGTAGAGTAATTGGAA+GGG 0.595548 1_3:-14041068 None:intergenic
ACAATCGGAAGAGGGTGCTA+AGG 0.596084 1_3:+14037788 Msa0105500:CDS
TTACACTGTCTTAACAGCAG+TGG 0.596282 1_3:+14036696 Msa0105500:CDS
TTGAGATGAAGTGGAATGAA+AGG 0.597744 1_3:-14036834 None:intergenic
ATGCATCAGTTGGTGATGAT+GGG 0.598176 1_3:+14037253 Msa0105500:CDS
TCATGGAGTAAAACTCCTGA+TGG 0.598436 1_3:-14037407 None:intergenic
GTTGCTATGATCTTAGCCTA+CGG 0.598914 1_3:+14036730 Msa0105500:CDS
AATTGAACCTGCGGTTGTTG+CGG 0.599082 1_3:-14037660 None:intergenic
AGACGTGTCATGACGCTCGC+CGG 0.600055 1_3:-14038445 None:intergenic
AGACATAAAAGAGGAAAACA+TGG 0.600168 1_3:+14041407 Msa0105500:three_prime_UTR
CAACCCAAGATCATTGCATG+TGG 0.601268 1_3:+14039857 Msa0105500:CDS
TTGAGGAAGTAATTATGTAG+AGG 0.602465 1_3:+14041515 Msa0105500:three_prime_UTR
CGACTCCGGTGGCTTTAGGG+TGG 0.603330 1_3:-14038393 None:intergenic
GTATAGAAACTAGAAAGAGA+AGG 0.606056 1_3:-14036418 None:intergenic
AAGGTAGGAGAACAAGGAGA+AGG 0.608019 1_3:+14038325 Msa0105500:CDS
GGTCAAGAAAAGGAAATTGG+TGG 0.613131 1_3:+14038274 Msa0105500:CDS
ATACCTACCTAAAGGCAACA+AGG 0.617062 1_3:-14038543 None:intergenic
GGAGTCGCGGATTCAAGTGT+CGG 0.620160 1_3:+14038409 Msa0105500:CDS
TACCTACCTAAAGGCAACAA+GGG 0.621757 1_3:-14038542 None:intergenic
CGGTATAAACCGCTTCGTCG+CGG 0.622533 1_3:+14036795 Msa0105500:CDS
TGGAAGATAGTAAACATGCA+TGG 0.626487 1_3:+14041130 Msa0105500:three_prime_UTR
CCACCAACGGACCGAACCGT+AGG 0.627762 1_3:-14036746 None:intergenic
GGGTGCTAAGGAGATCAGAA+TGG 0.627824 1_3:+14037800 Msa0105500:CDS
AATGGTGAAACCAATAACAA+AGG 0.629421 1_3:+14037846 Msa0105500:CDS
AAAGGAAACAATGGAAGCCG+CGG 0.630714 1_3:-14037178 None:intergenic
GAAGTATTCTATTCTTCACA+AGG 0.632098 1_3:+14041164 Msa0105500:three_prime_UTR
ATGAAGTGGAATGAAAGGAG+AGG 0.632775 1_3:-14036829 None:intergenic
TTTGTCTGCAATTGAACCTG+CGG 0.633224 1_3:-14037669 None:intergenic
AAGAGTTGCATATGTTTGTG+TGG 0.633927 1_3:+14037706 Msa0105500:CDS
CGGCGAAAACCGCGACGAAG+CGG 0.635295 1_3:-14036804 None:intergenic
GGTTTGTGAGACTAAGATGA+GGG 0.635837 1_3:-14036440 None:intergenic
GTCTCAGCTCCACCCCAAGA+GGG 0.636397 1_3:+14037373 Msa0105500:CDS
GAACAATAGCTACATGCAGG+AGG 0.636996 1_3:-14039973 None:intergenic
CGTGTCATGACGCTCGCCGG+AGG 0.639607 1_3:-14038442 None:intergenic
TTGTAAGGGAGACATAAAAG+AGG 0.640038 1_3:+14041398 Msa0105500:three_prime_UTR
GTGAGAAAATCTTCCACCAA+CGG 0.645716 1_3:-14036759 None:intergenic
TAAGGAGATCAGAATGGTGG+TGG 0.649271 1_3:+14037806 Msa0105500:CDS
AAAAGAGGAAAACATGGGAA+CGG 0.649795 1_3:+14041413 Msa0105500:three_prime_UTR
AACAATAGCTACATGCAGGA+GGG 0.650303 1_3:-14039972 None:intergenic
GACATAAAAGAGGAAAACAT+GGG 0.651787 1_3:+14041408 Msa0105500:three_prime_UTR
GTTGAAATTAGACCCTCTTG+GGG 0.655412 1_3:-14037385 None:intergenic
AACCCAAGATCATTGCATGT+GGG 0.657323 1_3:+14039858 Msa0105500:CDS
TCAAGAAAAGGAAATTGGTG+GGG 0.659437 1_3:+14038276 Msa0105500:CDS
AGTCTCAGCTCCACCCCAAG+AGG 0.662338 1_3:+14037372 Msa0105500:CDS
TGCTAAGGAGATCAGAATGG+TGG 0.667487 1_3:+14037803 Msa0105500:CDS
TTAGGAAGTCTAACGCGTCG+CGG 0.669107 1_3:+14037292 Msa0105500:CDS
TGGTTTGTGAGACTAAGATG+AGG 0.671362 1_3:-14036441 None:intergenic
ACAAATGGAACAATCCCTTG+TGG 0.676637 1_3:-14040861 None:intergenic
GGAGCAGTTTCCAGAAACCG+CGG 0.676934 1_3:+14037161 Msa0105500:CDS
TGATTAAAAGCTTAGCACCA+CGG 0.678635 1_3:-14037137 None:intergenic
CCATACATAGCAATTAACAA+AGG 0.679313 1_3:-14037030 None:intergenic
AGGTGTGTCAGAGAAAGTAG+GGG 0.684117 1_3:-14036398 None:intergenic
GGAAGTCTAACGCGTCGCGG+AGG 0.686204 1_3:+14037295 Msa0105500:CDS
GGTGTGTCAGAGAAAGTAGG+GGG 0.690706 1_3:-14036397 None:intergenic
AATAGGCTGCACTTCCACAA+GGG 0.700469 1_3:+14040847 Msa0105500:intron
CATGCAGGAGGGTCCCACGG+AGG 0.710876 1_3:-14039961 None:intergenic
GTTGGGCTCGAATTCAACGC+CGG 0.711535 1_3:+14038366 Msa0105500:CDS
AGAGGACTTCAAGTTCAATG+GGG 0.771569 1_3:+14038300 Msa0105500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG - chr1_3:14040295-14040314 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr1_3:14040296-14040315 None:intergenic 0.0%
!! AAATTTATAATAGAAAATGA+AGG - chr1_3:14036585-14036604 None:intergenic 10.0%
!! TAATTTAATTCTAATATAGT+TGG + chr1_3:14038024-14038043 Msa0105500:intron 10.0%
!! ATAAAAAATTAAAAGAAGTT+TGG + chr1_3:14038611-14038630 Msa0105500:intron 10.0%
!!! ATGTTGATAATTATAAAAAA+AGG + chr1_3:14038938-14038957 Msa0105500:intron 10.0%
!! ATAAAAGAAAATTAGTATAT+AGG - chr1_3:14039285-14039304 None:intergenic 10.0%
!!! TTTATTTTTTTTATTTGAGA+AGG + chr1_3:14041196-14041215 Msa0105500:three_prime_UTR 10.0%
!! TTCATATAAAATTATACAAA+TGG - chr1_3:14041489-14041508 None:intergenic 10.0%
!!! GTATAATTTTATATGAAAAT+CGG + chr1_3:14041492-14041511 Msa0105500:three_prime_UTR 10.0%
!! TTGTTAGATTAATTTAACAA+CGG - chr1_3:14037974-14037993 None:intergenic 15.0%
!! TTGTTAAATTAATCTAACAA+CGG + chr1_3:14037974-14037993 Msa0105500:intron 15.0%
!!! ATTGATTTCTCTATTATTTT+AGG - chr1_3:14038763-14038782 None:intergenic 15.0%
!!! TTGATAATTATAAAAAAAGG+TGG + chr1_3:14038941-14038960 Msa0105500:intron 15.0%
!! TTAGAAATATATCAACAAAA+GGG - chr1_3:14039677-14039696 None:intergenic 15.0%
!! TTTAGAAATATATCAACAAA+AGG - chr1_3:14039678-14039697 None:intergenic 15.0%
!! ATTCATTTGTCTTAAATTAT+TGG - chr1_3:14039705-14039724 None:intergenic 15.0%
!! ATGTGATTGAAAAATAAATA+AGG - chr1_3:14040948-14040967 None:intergenic 15.0%
!!! TTTTTTATAAATTGAATTGC+AGG + chr1_3:14041023-14041042 Msa0105500:intron 15.0%
!!! TTTTTATAAATTGAATTGCA+GGG + chr1_3:14041024-14041043 Msa0105500:intron 15.0%
!! ACAATAATCATGATAATAAT+AGG - chr1_3:14041575-14041594 None:intergenic 15.0%
!! AATAGAAAATGAAGGAAAAT+GGG - chr1_3:14036577-14036596 None:intergenic 20.0%
!! TAATAGAAAATGAAGGAAAA+TGG - chr1_3:14036578-14036597 None:intergenic 20.0%
!!! ATCATTTTGGATTTTTTTGT+TGG - chr1_3:14036661-14036680 None:intergenic 20.0%
!!! ATCTTTAAGTGTTATCATTT+TGG - chr1_3:14036674-14036693 None:intergenic 20.0%
!!! ATTTTAAATTGCACTTTAGA+CGG + chr1_3:14037911-14037930 Msa0105500:intron 20.0%
!!! AATGATTAGTCATTGATTAA+AGG + chr1_3:14038129-14038148 Msa0105500:intron 20.0%
!! GTAATGATAAGTTTCTAATT+TGG + chr1_3:14038238-14038257 Msa0105500:intron 20.0%
!! TTCTAATTTGGTTAAATTGA+AGG + chr1_3:14038250-14038269 Msa0105500:intron 20.0%
!! AGTTATGTAACTATTATTGT+TGG + chr1_3:14038706-14038725 Msa0105500:intron 20.0%
!! GAAATCTTTGTTAATTAAAG+TGG + chr1_3:14039437-14039456 Msa0105500:intron 20.0%
!! TTGTTAATTAAAGTGGTTAA+TGG + chr1_3:14039444-14039463 Msa0105500:intron 20.0%
!!! AATAAGTTTTATAACACTTG+AGG - chr1_3:14039551-14039570 None:intergenic 20.0%
!! AAAGAAGAATAAACAAAATG+AGG - chr1_3:14039768-14039787 None:intergenic 20.0%
!!! TGTTTATTCTTCTTTTTCTA+AGG + chr1_3:14039773-14039792 Msa0105500:intron 20.0%
!! TCATCATATATATATACACA+GGG + chr1_3:14040021-14040040 Msa0105500:intron 20.0%
!! TGAATCCTAAGTAAATTTAA+TGG + chr1_3:14040609-14040628 Msa0105500:intron 20.0%
!! GTATTCCATTAAATTTACTT+AGG - chr1_3:14040617-14040636 None:intergenic 20.0%
!!! ATATTATCATGTTTTGTGAT+AGG - chr1_3:14040775-14040794 None:intergenic 20.0%
!! ACAAAACATGATAATATTGA+AGG + chr1_3:14040778-14040797 Msa0105500:intron 20.0%
!! ATTATGAGATTGTTAACTTA+TGG + chr1_3:14040804-14040823 Msa0105500:intron 20.0%
!! AGTCAAATTATATCTAGAAA+TGG + chr1_3:14041448-14041467 Msa0105500:three_prime_UTR 20.0%
!! CATGATAATAATAGGTAAAA+AGG - chr1_3:14041567-14041586 None:intergenic 20.0%
! ATTTGTAATTGTAGAGTACA+AGG - chr1_3:14036350-14036369 None:intergenic 25.0%
!!! TTTTAGTGAAGTTTGTTGAA+TGG - chr1_3:14036634-14036653 None:intergenic 25.0%
! AAGATCATAGCAACATATAA+TGG - chr1_3:14036724-14036743 None:intergenic 25.0%
!! AATCTGAAGTTCATTTGATA+TGG - chr1_3:14036868-14036887 None:intergenic 25.0%
! CTAAAAATGGCAATTTAGAA+TGG + chr1_3:14036953-14036972 Msa0105500:CDS 25.0%
! TTGGTGCAATTTAATAATCA+AGG + chr1_3:14038043-14038062 Msa0105500:intron 25.0%
! TAATTTGGTTAAATTGAAGG+TGG + chr1_3:14038253-14038272 Msa0105500:intron 25.0%
! TTGAATAAGTGTTTGGATTA+CGG - chr1_3:14038501-14038520 None:intergenic 25.0%
! ACTTTATAATACCTACCTAA+AGG - chr1_3:14038554-14038573 None:intergenic 25.0%
! AAGAATTATTGAGGAGAAAT+TGG - chr1_3:14038858-14038877 None:intergenic 25.0%
! ATGTGATAGAAGAATTATTG+AGG - chr1_3:14038867-14038886 None:intergenic 25.0%
! TGGTAGTAAAGTAAAATGAA+TGG + chr1_3:14038961-14038980 Msa0105500:intron 25.0%
!! ATGATTGAATTTGAGAGTAT+GGG + chr1_3:14038995-14039014 Msa0105500:intron 25.0%
! GTATGAATATGAGAAAAGTA+TGG + chr1_3:14039021-14039040 Msa0105500:intron 25.0%
!! ATATGAGAAAAGTATGGATT+TGG + chr1_3:14039027-14039046 Msa0105500:intron 25.0%
!! TATGAGAAAAGTATGGATTT+GGG + chr1_3:14039028-14039047 Msa0105500:intron 25.0%
! AACAAACATCACCAATATAA+TGG - chr1_3:14039083-14039102 None:intergenic 25.0%
!! AGGTAACGTAGTTTAAAATT+GGG - chr1_3:14039179-14039198 None:intergenic 25.0%
!! AAGGTAACGTAGTTTAAAAT+TGG - chr1_3:14039180-14039199 None:intergenic 25.0%
!!! TTTTTTAAATATCGGAGAAG+TGG + chr1_3:14039413-14039432 Msa0105500:intron 25.0%
! GTTTAAATTTGCAACTAAGA+CGG - chr1_3:14039481-14039500 None:intergenic 25.0%
! AAAAATGCGACACTTATTAT+GGG - chr1_3:14039608-14039627 None:intergenic 25.0%
! TAAAAATGCGACACTTATTA+TGG - chr1_3:14039609-14039628 None:intergenic 25.0%
! CTCATCATATATATATACAC+AGG + chr1_3:14040020-14040039 Msa0105500:intron 25.0%
! CATCATATATATATACACAG+GGG + chr1_3:14040022-14040041 Msa0105500:intron 25.0%
! ATAAAAGACACCTTCATAAA+AGG + chr1_3:14040254-14040273 Msa0105500:intron 25.0%
! TTCTTTATTCAGTGTCTATT+GGG - chr1_3:14040387-14040406 None:intergenic 25.0%
! TGTAGCTCATATAGTTAAAA+AGG - chr1_3:14040531-14040550 None:intergenic 25.0%
! TGTCAATAAGCATTTCTATT+TGG + chr1_3:14040672-14040691 Msa0105500:intron 25.0%
! AAAAACACCTATTCATACTT+TGG + chr1_3:14041110-14041129 Msa0105500:exon 25.0%
!! ATTTTTCTTTGTTGGAAACT+TGG - chr1_3:14041263-14041282 None:intergenic 25.0%
! AAGTTTCCAACAAAGAAAAA+TGG + chr1_3:14041262-14041281 Msa0105500:three_prime_UTR 25.0%
! AGTTTCCAACAAAGAAAAAT+GGG + chr1_3:14041263-14041282 Msa0105500:three_prime_UTR 25.0%
!!! AAATTCCCATTTTTCTTTGT+TGG - chr1_3:14041271-14041290 None:intergenic 25.0%
!! GAATTTGAGAAAAAGTTGAT+AGG + chr1_3:14041285-14041304 Msa0105500:three_prime_UTR 25.0%
! TCATCTTGGAATTTCTAATA+TGG - chr1_3:14041341-14041360 None:intergenic 25.0%
!!! ATACAAATGGTTGATAGAAA+GGG - chr1_3:14041476-14041495 None:intergenic 25.0%
!!! TATACAAATGGTTGATAGAA+AGG - chr1_3:14041477-14041496 None:intergenic 25.0%
!! TTTTATATGAAAATCGGTTG+AGG + chr1_3:14041498-14041517 Msa0105500:three_prime_UTR 25.0%
! TTATGTAGAGGAAAAGAAAT+TGG + chr1_3:14041527-14041546 Msa0105500:three_prime_UTR 25.0%
GTATAGAAACTAGAAAGAGA+AGG - chr1_3:14036421-14036440 None:intergenic 30.0%
! ACTCATTCTGTGCAAAATTT+TGG - chr1_3:14036499-14036518 None:intergenic 30.0%
! AGTTAGTTAACTAGGAGTAT+AGG - chr1_3:14036537-14036556 None:intergenic 30.0%
AAGGAAAATGGGAAAGAAAA+CGG - chr1_3:14036566-14036585 None:intergenic 30.0%
! GTTCATTTGATATGGATTGT+TGG - chr1_3:14036860-14036879 None:intergenic 30.0%
TGGACATTGTTCACTAAAAA+TGG + chr1_3:14036940-14036959 Msa0105500:CDS 30.0%
CCATACATAGCAATTAACAA+AGG - chr1_3:14037033-14037052 None:intergenic 30.0%
CCTTTGTTAATTGCTATGTA+TGG + chr1_3:14037030-14037049 Msa0105500:CDS 30.0%
TGATTATTCAGGTAGCTTAA+TGG + chr1_3:14037053-14037072 Msa0105500:CDS 30.0%
! AACCAAGACATTCCAATTTT+GGG + chr1_3:14037439-14037458 Msa0105500:CDS 30.0%
! CCATTTTCTTCGAAATTTGA+AGG - chr1_3:14037516-14037535 None:intergenic 30.0%
CCTTCAAATTTCGAAGAAAA+TGG + chr1_3:14037513-14037532 Msa0105500:CDS 30.0%
!! TTTTGATTCTGATTCTTCAC+AGG - chr1_3:14037633-14037652 None:intergenic 30.0%
GCTGATGAACATAATCAAAA+TGG + chr1_3:14037828-14037847 Msa0105500:CDS 30.0%
AATGGTGAAACCAATAACAA+AGG + chr1_3:14037846-14037865 Msa0105500:CDS 30.0%
! GAAACCAATAACAAAGGTAT+AGG + chr1_3:14037852-14037871 Msa0105500:intron 30.0%
! ATTGCCTATACCTTTGTTAT+TGG - chr1_3:14037859-14037878 None:intergenic 30.0%
! TAACAAAGGTATAGGCAATT+AGG + chr1_3:14037860-14037879 Msa0105500:intron 30.0%
AGGTTTAATCTTAGAACCAA+TGG - chr1_3:14038077-14038096 None:intergenic 30.0%
TTAAACCTAGTATATTCCGA+AGG + chr1_3:14038089-14038108 Msa0105500:intron 30.0%
! TTTTAGTAGTTCATGTCCTT+CGG - chr1_3:14038108-14038127 None:intergenic 30.0%
ATGAGACTTGAATAAGTGTT+TGG - chr1_3:14038508-14038527 None:intergenic 30.0%
AACACTTATTCAAGTCTCAT+TGG + chr1_3:14038508-14038527 Msa0105500:CDS 30.0%
TTGAGGAGAAATTGGATAAA+TGG - chr1_3:14038850-14038869 None:intergenic 30.0%
ACTCTCAAATTCAATCATGT+TGG - chr1_3:14038993-14039012 None:intergenic 30.0%
CATGATTGAATTTGAGAGTA+TGG + chr1_3:14038994-14039013 Msa0105500:intron 30.0%
! ATGAGAAAAGTATGGATTTG+GGG + chr1_3:14039029-14039048 Msa0105500:intron 30.0%
! AACATCACCAATATAATGGA+TGG - chr1_3:14039079-14039098 None:intergenic 30.0%
TCAACCACTATGGTTAATTA+GGG - chr1_3:14039243-14039262 None:intergenic 30.0%
TTCAACCACTATGGTTAATT+AGG - chr1_3:14039244-14039263 None:intergenic 30.0%
AACCATAGTGGTTGAAATAA+TGG + chr1_3:14039248-14039267 Msa0105500:intron 30.0%
TTCCATTATTTCAACCACTA+TGG - chr1_3:14039253-14039272 None:intergenic 30.0%
ATATCAACAAAAGGGTAAAG+TGG - chr1_3:14039669-14039688 None:intergenic 30.0%
!!! TAAGGTTTAGTTTTACAGCT+TGG + chr1_3:14039791-14039810 Msa0105500:intron 30.0%
AATAAATACACCTTACCCTT+TGG + chr1_3:14040109-14040128 Msa0105500:intron 30.0%
! TTTTAACAAGTCACACCTTA+AGG + chr1_3:14040139-14040158 Msa0105500:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr1_3:14040157-14040176 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG + chr1_3:14040199-14040218 Msa0105500:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG - chr1_3:14040205-14040224 None:intergenic 30.0%
! ATAGAAGACACCTTTTATGA+AGG - chr1_3:14040267-14040286 None:intergenic 30.0%
TCTTTATTCAGTGTCTATTG+GGG - chr1_3:14040386-14040405 None:intergenic 30.0%
CTTCTTTATTCAGTGTCTAT+TGG - chr1_3:14040388-14040407 None:intergenic 30.0%
!! GAGAATGGATTAGCATATAT+TGG - chr1_3:14040698-14040717 None:intergenic 30.0%
! TACTCTTTTGCAAACACAAA+TGG - chr1_3:14040879-14040898 None:intergenic 30.0%
TTGAATTGCAGGGTTATATT+TGG + chr1_3:14041034-14041053 Msa0105500:intron 30.0%
ATGTAGTAGAGTAGAGTAAT+TGG - chr1_3:14041076-14041095 None:intergenic 30.0%
!! ATAGGTGTTTTTACAAACCA+AGG - chr1_3:14041102-14041121 None:intergenic 30.0%
CTATCTTCCAAAGTATGAAT+AGG - chr1_3:14041120-14041139 None:intergenic 30.0%
! GAAGTATTCTATTCTTCACA+AGG + chr1_3:14041164-14041183 Msa0105500:three_prime_UTR 30.0%
TATGGAGACATTAGCATTAT+GGG - chr1_3:14041323-14041342 None:intergenic 30.0%
ATATGGAGACATTAGCATTA+TGG - chr1_3:14041324-14041343 None:intergenic 30.0%
CCTTGAAAATTACATCATCT+TGG - chr1_3:14041355-14041374 None:intergenic 30.0%
! CCAAGATGATGTAATTTTCA+AGG + chr1_3:14041352-14041371 Msa0105500:three_prime_UTR 30.0%
AGACATAAAAGAGGAAAACA+TGG + chr1_3:14041407-14041426 Msa0105500:three_prime_UTR 30.0%
GACATAAAAGAGGAAAACAT+GGG + chr1_3:14041408-14041427 Msa0105500:three_prime_UTR 30.0%
TTGAGGAAGTAATTATGTAG+AGG + chr1_3:14041515-14041534 Msa0105500:three_prime_UTR 30.0%
!! AGGAGTACTTGTAATAGTAC+TGG - chr1_3:14036464-14036483 None:intergenic 35.0%
!! AATTTTGGTGACTACTCTGT+AGG - chr1_3:14036484-14036503 None:intergenic 35.0%
! AGTTAACTAGGAGTATAGGA+AGG - chr1_3:14036533-14036552 None:intergenic 35.0%
! GGTTGGTTAGTTAGTTAACT+AGG - chr1_3:14036545-14036564 None:intergenic 35.0%
AAAATGGGAAAGAAAACGGT+TGG - chr1_3:14036562-14036581 None:intergenic 35.0%
TTTATACCGGAACATTGATC+CGG - chr1_3:14036784-14036803 None:intergenic 35.0%
TTGAGATGAAGTGGAATGAA+AGG - chr1_3:14036837-14036856 None:intergenic 35.0%
TGCTAGTAGCACTTTCATTA+TGG + chr1_3:14036920-14036939 Msa0105500:CDS 35.0%
ATCAACACTTCCTAACACTT+TGG + chr1_3:14036996-14037015 Msa0105500:CDS 35.0%
ACTTCCTAACACTTTGGTTA+TGG + chr1_3:14037002-14037021 Msa0105500:CDS 35.0%
CTTCCTAACACTTTGGTTAT+GGG + chr1_3:14037003-14037022 Msa0105500:CDS 35.0%
! ATTCCCATAACCAAAGTGTT+AGG - chr1_3:14037009-14037028 None:intergenic 35.0%
GCTATGTATGGTGATTATTC+AGG + chr1_3:14037042-14037061 Msa0105500:CDS 35.0%
!! TAGCTTAATGGTTCAAGTTG+TGG + chr1_3:14037065-14037084 Msa0105500:CDS 35.0%
TGGTTCTTCAGTGTATCATT+TGG + chr1_3:14037085-14037104 Msa0105500:CDS 35.0%
!!! CTTTTTCTTTTTGAGTACCG+TGG + chr1_3:14037120-14037139 Msa0105500:CDS 35.0%
TGATTAAAAGCTTAGCACCA+CGG - chr1_3:14037140-14037159 None:intergenic 35.0%
!! TGGTGCTAAGCTTTTAATCA+TGG + chr1_3:14037140-14037159 Msa0105500:CDS 35.0%
ATCGACCTTAAAGGAAACAA+TGG - chr1_3:14037190-14037209 None:intergenic 35.0%
!! TGTTTCCTTTAAGGTCGATT+CGG + chr1_3:14037191-14037210 Msa0105500:CDS 35.0%
GGAAGTTACATGTTACTGTT+AGG + chr1_3:14037274-14037293 Msa0105500:CDS 35.0%
! CAACCAAGACATTCCAATTT+TGG + chr1_3:14037438-14037457 Msa0105500:CDS 35.0%
! ACCAAGACATTCCAATTTTG+GGG + chr1_3:14037440-14037459 Msa0105500:CDS 35.0%
CAAATCATTAGCCCCAAAAT+TGG - chr1_3:14037454-14037473 None:intergenic 35.0%
AAATTTGAAGGTCTAGGAGT+TGG - chr1_3:14037504-14037523 None:intergenic 35.0%
TCTTCGAAATTTGAAGGTCT+AGG - chr1_3:14037510-14037529 None:intergenic 35.0%
TTAGTAGTAGAGGAGAATTC+CGG - chr1_3:14037609-14037628 None:intergenic 35.0%
AAGAGTTGCATATGTTTGTG+TGG + chr1_3:14037706-14037725 Msa0105500:CDS 35.0%
AATTGAAGGTGGTCAAGAAA+AGG + chr1_3:14038264-14038283 Msa0105500:intron 35.0%
GTCAAGAAAAGGAAATTGGT+GGG + chr1_3:14038275-14038294 Msa0105500:CDS 35.0%
TCAAGAAAAGGAAATTGGTG+GGG + chr1_3:14038276-14038295 Msa0105500:CDS 35.0%
! AAGAGGACTTCAAGTTCAAT+GGG + chr1_3:14038299-14038318 Msa0105500:CDS 35.0%
GTCTCATACTCATTATGGTT+TGG + chr1_3:14038464-14038483 Msa0105500:CDS 35.0%
! TCATACTCATTATGGTTTGG+AGG + chr1_3:14038467-14038486 Msa0105500:CDS 35.0%
!! CAAGTCTCATTGGTCTTATT+TGG + chr1_3:14038518-14038537 Msa0105500:CDS 35.0%
!!! TTGTTGGTTTTCTTACATGC+AGG + chr1_3:14038722-14038741 Msa0105500:intron 35.0%
! CTATGTTTAGCTTAGGTAAG+TGG + chr1_3:14038815-14038834 Msa0105500:intron 35.0%
! TTGAATTTGAGAGTATGGGT+AGG + chr1_3:14038999-14039018 Msa0105500:intron 35.0%
! TGAGAAAAGTATGGATTTGG+GGG + chr1_3:14039030-14039049 Msa0105500:intron 35.0%
CTCATAGCCATCCATTATAT+TGG + chr1_3:14039069-14039088 Msa0105500:intron 35.0%
TAAAATTGGGTCCCATATGT+CGG - chr1_3:14039166-14039185 None:intergenic 35.0%
AGTAAGGAATCTTATAGCCA+TGG - chr1_3:14039903-14039922 None:intergenic 35.0%
ATGGCTATAAGATTCCTTAC+TGG + chr1_3:14039902-14039921 Msa0105500:CDS 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr1_3:14040056-14040075 Msa0105500:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr1_3:14040062-14040081 None:intergenic 35.0%
TGTTAAAAGTCACCACCAAA+GGG - chr1_3:14040127-14040146 None:intergenic 35.0%
TTGTTAAAAGTCACCACCAA+AGG - chr1_3:14040128-14040147 None:intergenic 35.0%
AGACACTGAATAAAGAAGAG+TGG + chr1_3:14040390-14040409 Msa0105500:intron 35.0%
CACATCAAGTACGAAAAAAG+AGG + chr1_3:14040458-14040477 Msa0105500:intron 35.0%
! ACTTATGGTAATGAACGTTG+TGG + chr1_3:14040819-14040838 Msa0105500:intron 35.0%
GTAGAGTAGAGTAATTGGAA+GGG - chr1_3:14041071-14041090 None:intergenic 35.0%
AGTAGAGTAGAGTAATTGGA+AGG - chr1_3:14041072-14041091 None:intergenic 35.0%
TGGAAGATAGTAAACATGCA+TGG + chr1_3:14041130-14041149 Msa0105500:three_prime_UTR 35.0%
CTTGGAATGACAATTTCTGT+TGG - chr1_3:14041245-14041264 None:intergenic 35.0%
! AGAGAGCATGTAACATTGTA+AGG + chr1_3:14041383-14041402 Msa0105500:three_prime_UTR 35.0%
! GAGAGCATGTAACATTGTAA+GGG + chr1_3:14041384-14041403 Msa0105500:three_prime_UTR 35.0%
TTGTAAGGGAGACATAAAAG+AGG + chr1_3:14041398-14041417 Msa0105500:three_prime_UTR 35.0%
AAAAGAGGAAAACATGGGAA+CGG + chr1_3:14041413-14041432 Msa0105500:three_prime_UTR 35.0%
AAGGTGTGTCAGAGAAAGTA+GGG - chr1_3:14036402-14036421 None:intergenic 40.0%
GGTTTGTGAGACTAAGATGA+GGG - chr1_3:14036443-14036462 None:intergenic 40.0%
! TGGTTTGTGAGACTAAGATG+AGG - chr1_3:14036444-14036463 None:intergenic 40.0%
GTTGAATGGCATGTGAAGAA+AGG - chr1_3:14036620-14036639 None:intergenic 40.0%
TTACACTGTCTTAACAGCAG+TGG + chr1_3:14036696-14036715 Msa0105500:CDS 40.0%
GTTGCTATGATCTTAGCCTA+CGG + chr1_3:14036730-14036749 Msa0105500:CDS 40.0%
TATGATCTTAGCCTACGGTT+CGG + chr1_3:14036735-14036754 Msa0105500:CDS 40.0%
GTGAGAAAATCTTCCACCAA+CGG - chr1_3:14036762-14036781 None:intergenic 40.0%
! TTGGTGGAAGATTTTCTCAC+CGG + chr1_3:14036762-14036781 Msa0105500:CDS 40.0%
ATGAAGTGGAATGAAAGGAG+AGG - chr1_3:14036832-14036851 None:intergenic 40.0%
! GATTGTTGGTTGAGATGAAG+TGG - chr1_3:14036846-14036865 None:intergenic 40.0%
GGCTTCCATTGTTTCCTTTA+AGG + chr1_3:14037182-14037201 Msa0105500:CDS 40.0%
AACATCCGAATCGACCTTAA+AGG - chr1_3:14037199-14037218 None:intergenic 40.0%
TCGGATGTTATGTCGTTAGA+TGG + chr1_3:14037210-14037229 Msa0105500:CDS 40.0%
CTTGAAACTGATGCATCAGT+TGG + chr1_3:14037243-14037262 Msa0105500:CDS 40.0%
!! ATGCATCAGTTGGTGATGAT+GGG + chr1_3:14037253-14037272 Msa0105500:CDS 40.0%
TCAGCTCCAGTCAAATTTGA+CGG - chr1_3:14037345-14037364 None:intergenic 40.0%
GTTGAAATTAGACCCTCTTG+GGG - chr1_3:14037388-14037407 None:intergenic 40.0%
GGTTGAAATTAGACCCTCTT+GGG - chr1_3:14037389-14037408 None:intergenic 40.0%
TGGTTGAAATTAGACCCTCT+TGG - chr1_3:14037390-14037409 None:intergenic 40.0%
AGGGTCTAATTTCAACCATC+AGG + chr1_3:14037392-14037411 Msa0105500:CDS 40.0%
TCATGGAGTAAAACTCCTGA+TGG - chr1_3:14037410-14037429 None:intergenic 40.0%
! TCAGGAGTTTTACTCCATGA+TGG + chr1_3:14037410-14037429 Msa0105500:CDS 40.0%
! CAGGAGTTTTACTCCATGAT+GGG + chr1_3:14037411-14037430 Msa0105500:CDS 40.0%
!! TCTTGGTTGATAACCCATCA+TGG - chr1_3:14037427-14037446 None:intergenic 40.0%
!! TCCTAGATTCGGGTTTTATC+CGG + chr1_3:14037545-14037564 Msa0105500:CDS 40.0%
AACTGTGCCTAATTCGTATC+CGG + chr1_3:14037575-14037594 Msa0105500:CDS 40.0%
TAGTAGTAGAGGAGAATTCC+GGG - chr1_3:14037608-14037627 None:intergenic 40.0%
CTTCACAGGTTTAGTAGTAG+AGG - chr1_3:14037619-14037638 None:intergenic 40.0%
TTTGTCTGCAATTGAACCTG+CGG - chr1_3:14037672-14037691 None:intergenic 40.0%
CAGGTTCAATTGCAGACAAA+AGG + chr1_3:14037672-14037691 Msa0105500:CDS 40.0%
ATTGCAGACAAAAGGTTCTC+AGG + chr1_3:14037680-14037699 Msa0105500:CDS 40.0%
GTTCCGAAATTCGGAACAAT+CGG + chr1_3:14037773-14037792 Msa0105500:CDS 40.0%
CTTCCGATTGTTCCGAATTT+CGG - chr1_3:14037779-14037798 None:intergenic 40.0%
AAATTCGGAACAATCGGAAG+AGG + chr1_3:14037779-14037798 Msa0105500:CDS 40.0%
AATTCGGAACAATCGGAAGA+GGG + chr1_3:14037780-14037799 Msa0105500:CDS 40.0%
CGGAGAGATATAGTACTCAT+AGG + chr1_3:14037994-14038013 Msa0105500:intron 40.0%
AATCAAGGCTCTTGATCCAT+TGG + chr1_3:14038058-14038077 Msa0105500:intron 40.0%
CATGTCCTTCGGAATATACT+AGG - chr1_3:14038097-14038116 None:intergenic 40.0%
GGTGGTCAAGAAAAGGAAAT+TGG + chr1_3:14038271-14038290 Msa0105500:intron 40.0%
GGTCAAGAAAAGGAAATTGG+TGG + chr1_3:14038274-14038293 Msa0105500:CDS 40.0%
! GAAGAGGACTTCAAGTTCAA+TGG + chr1_3:14038298-14038317 Msa0105500:CDS 40.0%
! AGAGGACTTCAAGTTCAATG+GGG + chr1_3:14038300-14038319 Msa0105500:CDS 40.0%
GACACGTCTCATACTCATTA+TGG + chr1_3:14038459-14038478 Msa0105500:CDS 40.0%
TACCTACCTAAAGGCAACAA+GGG - chr1_3:14038545-14038564 None:intergenic 40.0%
ATACCTACCTAAAGGCAACA+AGG - chr1_3:14038546-14038565 None:intergenic 40.0%
!! TTGGTTTTCTTACATGCAGG+TGG + chr1_3:14038725-14038744 Msa0105500:intron 40.0%
! TGGTTTTCTTACATGCAGGT+GGG + chr1_3:14038726-14038745 Msa0105500:intron 40.0%
ATTTCCATACTGTCTGATGC+TGG + chr1_3:14038781-14038800 Msa0105500:CDS 40.0%
! GGAATGGCTATGTTTAGCTT+AGG + chr1_3:14038808-14038827 Msa0105500:CDS 40.0%
AAAATTGGGTCCCATATGTC+GGG - chr1_3:14039165-14039184 None:intergenic 40.0%
ACCTTCTTCTTCAGACACAA+TGG + chr1_3:14039195-14039214 Msa0105500:intron 40.0%
TCCATTGTGTCTGAAGAAGA+AGG - chr1_3:14039199-14039218 None:intergenic 40.0%
TTCTTCAGACACAATGGACA+AGG + chr1_3:14039201-14039220 Msa0105500:intron 40.0%
TCTTCAGACACAATGGACAA+GGG + chr1_3:14039202-14039221 Msa0105500:intron 40.0%
GCTACCCTAATTAACCATAG+TGG + chr1_3:14039236-14039255 Msa0105500:intron 40.0%
AAGACACACATAGTGAGACA+GGG - chr1_3:14039347-14039366 None:intergenic 40.0%
AAAGACACACATAGTGAGAC+AGG - chr1_3:14039348-14039367 None:intergenic 40.0%
AACCCAAGATCATTGCATGT+GGG + chr1_3:14039858-14039877 Msa0105500:CDS 40.0%
TTCCCACATGCAATGATCTT+GGG - chr1_3:14039863-14039882 None:intergenic 40.0%
ATTCCCACATGCAATGATCT+TGG - chr1_3:14039864-14039883 None:intergenic 40.0%
! TTCTGTTGCTTCATTTGCCA+TGG + chr1_3:14039883-14039902 Msa0105500:CDS 40.0%
AACAATAGCTACATGCAGGA+GGG - chr1_3:14039975-14039994 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr1_3:14040055-14040074 Msa0105500:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - chr1_3:14040063-14040082 None:intergenic 40.0%
AAATACACCTTACCCTTTGG+TGG + chr1_3:14040112-14040131 Msa0105500:intron 40.0%
!! GTACGAAAAAAGAGGTACTG+CGG + chr1_3:14040466-14040485 Msa0105500:intron 40.0%
TCCATTCTCTCTTGCTTCTT+TGG + chr1_3:14040709-14040728 Msa0105500:intron 40.0%
TCCAAAGAAGCAAGAGAGAA+TGG - chr1_3:14040713-14040732 None:intergenic 40.0%
TGAACGTTGTGGTTGACAAT+AGG + chr1_3:14040830-14040849 Msa0105500:intron 40.0%
ACAAATGGAACAATCCCTTG+TGG - chr1_3:14040864-14040883 None:intergenic 40.0%
TGCTTACGCTGTACTAAGAA+TGG - chr1_3:14040916-14040935 None:intergenic 40.0%
CTACTCTACTACATTCTCCT+TGG + chr1_3:14041082-14041101 Msa0105500:CDS 40.0%
ATGTTACATGCTCTCTCTTG+AGG - chr1_3:14041379-14041398 None:intergenic 40.0%
AGGTGTGTCAGAGAAAGTAG+GGG - chr1_3:14036401-14036420 None:intergenic 45.0%
! GAAGGTGTGTCAGAGAAAGT+AGG - chr1_3:14036403-14036422 None:intergenic 45.0%
TTCTCACCGGATCAATGTTC+CGG + chr1_3:14036775-14036794 Msa0105500:CDS 45.0%
GTGGAATGAAAGGAGAGGTA+CGG - chr1_3:14036827-14036846 None:intergenic 45.0%
AAAGGAAACAATGGAAGCCG+CGG - chr1_3:14037181-14037200 None:intergenic 45.0%
!! GATGCATCAGTTGGTGATGA+TGG + chr1_3:14037252-14037271 Msa0105500:CDS 45.0%
GCCCCAAAATTGGAATGTCT+TGG - chr1_3:14037444-14037463 None:intergenic 45.0%
TCTGTCCAGTCTTCTTCTAG+AGG + chr1_3:14037477-14037496 Msa0105500:CDS 45.0%
! TTGGTCCTCTAGAAGAAGAC+TGG - chr1_3:14037485-14037504 None:intergenic 45.0%
GGTGCAAGTTCTCCTAGATT+CGG + chr1_3:14037534-14037553 Msa0105500:CDS 45.0%
GTGCAAGTTCTCCTAGATTC+GGG + chr1_3:14037535-14037554 Msa0105500:CDS 45.0%
! TTTGGCACCGGATACGAATT+AGG - chr1_3:14037585-14037604 None:intergenic 45.0%
AATTGAACCTGCGGTTGTTG+CGG - chr1_3:14037663-14037682 None:intergenic 45.0%
CCTCAACGTGTTCCGAAATT+CGG + chr1_3:14037764-14037783 Msa0105500:CDS 45.0%
TGCTAAGGAGATCAGAATGG+TGG + chr1_3:14037803-14037822 Msa0105500:CDS 45.0%
TAAGGAGATCAGAATGGTGG+TGG + chr1_3:14037806-14037825 Msa0105500:CDS 45.0%
AAAGGAAATTGGTGGGGAAG+AGG + chr1_3:14038282-14038301 Msa0105500:CDS 45.0%
! CTTCAAGTTCAATGGGGTGA+AGG + chr1_3:14038306-14038325 Msa0105500:CDS 45.0%
AAGTTCAATGGGGTGAAGGT+AGG + chr1_3:14038310-14038329 Msa0105500:CDS 45.0%
AAGGTAGGAGAACAAGGAGA+AGG + chr1_3:14038325-14038344 Msa0105500:CDS 45.0%
ACCCAATGGACCTAACAAGT+TGG + chr1_3:14038348-14038367 Msa0105500:CDS 45.0%
!! CCCAACTTGTTAGGTCCATT+GGG - chr1_3:14038352-14038371 None:intergenic 45.0%
CCCAATGGACCTAACAAGTT+GGG + chr1_3:14038349-14038368 Msa0105500:CDS 45.0%
! GAATTCGAGCCCAACTTGTT+AGG - chr1_3:14038361-14038380 None:intergenic 45.0%
TTTGGTCCCTTGTTGCCTTT+AGG + chr1_3:14038536-14038555 Msa0105500:CDS 45.0%
AAGACCAGCATCAGACAGTA+TGG - chr1_3:14038788-14038807 None:intergenic 45.0%
! ATACTGTCTGATGCTGGTCT+TGG + chr1_3:14038787-14038806 Msa0105500:CDS 45.0%
AGCATAATGTCCCCGACATA+TGG + chr1_3:14039151-14039170 Msa0105500:intron 45.0%
GCATAATGTCCCCGACATAT+GGG + chr1_3:14039152-14039171 Msa0105500:intron 45.0%
AAATTGGGTCCCATATGTCG+GGG - chr1_3:14039164-14039183 None:intergenic 45.0%
CAACCCAAGATCATTGCATG+TGG + chr1_3:14039857-14039876 Msa0105500:CDS 45.0%
GAACAATAGCTACATGCAGG+AGG - chr1_3:14039976-14039995 None:intergenic 45.0%
CCTGAACAATAGCTACATGC+AGG - chr1_3:14039979-14039998 None:intergenic 45.0%
CCTGCATGTAGCTATTGTTC+AGG + chr1_3:14039976-14039995 Msa0105500:CDS 45.0%
AAAGTCACCACCAAAGGGTA+AGG - chr1_3:14040122-14040141 None:intergenic 45.0%
AATAGGCTGCACTTCCACAA+GGG + chr1_3:14040847-14040866 Msa0105500:intron 45.0%
CTGTACTAAGAATGGCTGGA+TGG - chr1_3:14040908-14040927 None:intergenic 45.0%
TACGCTGTACTAAGAATGGC+TGG - chr1_3:14040912-14040931 None:intergenic 45.0%
!! ATATTAATAATGATTATTTA+AGG + chr1_3:14038186-14038205 Msa0105500:intron 5.0%
!!! TGTTTTTTTTTTTTAAATAT+CGG + chr1_3:14039405-14039424 Msa0105500:intron 5.0%
!!! TTATTTATATTGATTTAAAT+AGG + chr1_3:14039566-14039585 Msa0105500:intron 5.0%
GGTGTGTCAGAGAAAGTAGG+GGG - chr1_3:14036400-14036419 None:intergenic 50.0%
TTAGGAAGTCTAACGCGTCG+CGG + chr1_3:14037292-14037311 Msa0105500:CDS 50.0%
CCAGTCAAATTTGACGGTCG+CGG - chr1_3:14037339-14037358 None:intergenic 50.0%
GAAATTAGACCCTCTTGGGG+TGG - chr1_3:14037385-14037404 None:intergenic 50.0%
GCCGGATAAAACCCGAATCT+AGG - chr1_3:14037549-14037568 None:intergenic 50.0%
GTAGAGGAGAATTCCGGGTT+TGG - chr1_3:14037603-14037622 None:intergenic 50.0%
CCGAATTTCGGAACACGTTG+AGG - chr1_3:14037767-14037786 None:intergenic 50.0%
!! ACAATCGGAAGAGGGTGCTA+AGG + chr1_3:14037788-14037807 Msa0105500:CDS 50.0%
GGGTGCTAAGGAGATCAGAA+TGG + chr1_3:14037800-14037819 Msa0105500:CDS 50.0%
GAACAAGGAGAAGGACCCAA+TGG + chr1_3:14038334-14038353 Msa0105500:CDS 50.0%
!! GCCCAACTTGTTAGGTCCAT+TGG - chr1_3:14038353-14038372 None:intergenic 50.0%
TGTCGGAAAACTCATGCCTC+CGG + chr1_3:14038426-14038445 Msa0105500:CDS 50.0%
GTCCCTTGTTGCCTTTAGGT+AGG + chr1_3:14038540-14038559 Msa0105500:intron 50.0%
!! GTCTGATGCTGGTCTTGGAA+TGG + chr1_3:14038792-14038811 Msa0105500:CDS 50.0%
TCAGACACAATGGACAAGGG+TGG + chr1_3:14039205-14039224 Msa0105500:intron 50.0%
CCATAACTGCTGGACCAGTA+AGG - chr1_3:14039919-14039938 None:intergenic 50.0%
CCTTACTGGTCCAGCAGTTA+TGG + chr1_3:14039916-14039935 Msa0105500:CDS 50.0%
CAATAGGCTGCACTTCCACA+AGG + chr1_3:14040846-14040865 Msa0105500:intron 50.0%
CGCGACGAAGCGGTTTATAC+CGG - chr1_3:14036797-14036816 None:intergenic 55.0%
CGGTATAAACCGCTTCGTCG+CGG + chr1_3:14036795-14036814 Msa0105500:CDS 55.0%
GGAGCAGTTTCCAGAAACCG+CGG + chr1_3:14037161-14037180 Msa0105500:CDS 55.0%
ACAATGGAAGCCGCGGTTTC+TGG - chr1_3:14037174-14037193 None:intergenic 55.0%
CCGCGACCGTCAAATTTGAC+TGG + chr1_3:14037336-14037355 Msa0105500:CDS 55.0%
TTAGGCACAGTTTGCGCTGC+CGG - chr1_3:14037567-14037586 None:intergenic 55.0%
! TTCGTATCCGGTGCCAAACC+CGG + chr1_3:14037587-14037606 Msa0105500:CDS 55.0%
GAGAATTCCGGGTTTGGCAC+CGG - chr1_3:14037597-14037616 None:intergenic 55.0%
TTTGATGCCGCAACAACCGC+AGG + chr1_3:14037653-14037672 Msa0105500:CDS 55.0%
!! CTCAAGTGCTTCGCCGGTTT+CGG + chr1_3:14037731-14037750 Msa0105500:CDS 55.0%
AGGCCAGCACTTTCCGAAAC+CGG - chr1_3:14037747-14037766 None:intergenic 55.0%
GGGGTGAAGGTAGGAGAACA+AGG + chr1_3:14038319-14038338 Msa0105500:CDS 55.0%
GTTGGGCTCGAATTCAACGC+CGG + chr1_3:14038366-14038385 Msa0105500:CDS 55.0%
GACACTTGAATCCGCGACTC+CGG - chr1_3:14038410-14038429 None:intergenic 55.0%
GGAGTCGCGGATTCAAGTGT+CGG + chr1_3:14038409-14038428 Msa0105500:CDS 55.0%
GACACAATGGACAAGGGTGG+TGG + chr1_3:14039208-14039227 Msa0105500:intron 55.0%
GAAGCTGCTGCCATAACTGC+TGG - chr1_3:14039929-14039948 None:intergenic 55.0%
!! TAGCCTACGGTTCGGTCCGT+TGG + chr1_3:14036743-14036762 Msa0105500:CDS 60.0%
AGTCTCAGCTCCACCCCAAG+AGG + chr1_3:14037372-14037391 Msa0105500:CDS 60.0%
GTCTCAGCTCCACCCCAAGA+GGG + chr1_3:14037373-14037392 Msa0105500:CDS 60.0%
GTGGAGCTCAAGTGCTTCGC+CGG + chr1_3:14037725-14037744 Msa0105500:CDS 60.0%
!! TCGCCGGTTTCGGAAAGTGC+TGG + chr1_3:14037741-14037760 Msa0105500:CDS 60.0%
!! GTGGCTTTAGGGTGGAGCTC+CGG - chr1_3:14038388-14038407 None:intergenic 60.0%
GAGCTCCACCCTAAAGCCAC+CGG + chr1_3:14038388-14038407 Msa0105500:CDS 60.0%
ACTTGAATCCGCGACTCCGG+TGG - chr1_3:14038407-14038426 None:intergenic 60.0%
AGACGTGTCATGACGCTCGC+CGG - chr1_3:14038448-14038467 None:intergenic 60.0%
GCAGCAGCTTCTATCGCCGT+TGG + chr1_3:14039938-14039957 Msa0105500:CDS 60.0%
CTACATGCAGGAGGGTCCCA+CGG - chr1_3:14039967-14039986 None:intergenic 60.0%
CCACCAACGGACCGAACCGT+AGG - chr1_3:14036749-14036768 None:intergenic 65.0%
!! CCTACGGTTCGGTCCGTTGG+TGG + chr1_3:14036746-14036765 Msa0105500:CDS 65.0%
CGGCGAAAACCGCGACGAAG+CGG - chr1_3:14036807-14036826 None:intergenic 65.0%
GGAAGTCTAACGCGTCGCGG+AGG + chr1_3:14037295-14037314 Msa0105500:CDS 65.0%
!! CGACTCCGGTGGCTTTAGGG+TGG - chr1_3:14038396-14038415 None:intergenic 65.0%
! CCGCGACTCCGGTGGCTTTA+GGG - chr1_3:14038399-14038418 None:intergenic 65.0%
CCCTAAAGCCACCGGAGTCG+CGG + chr1_3:14038396-14038415 Msa0105500:CDS 65.0%
TCCGCGACTCCGGTGGCTTT+AGG - chr1_3:14038400-14038419 None:intergenic 65.0%
! TCTATCGCCGTTGGCCTCCG+TGG + chr1_3:14039947-14039966 Msa0105500:CDS 65.0%
! CTATCGCCGTTGGCCTCCGT+GGG + chr1_3:14039948-14039967 Msa0105500:CDS 65.0%
CGTGTCATGACGCTCGCCGG+AGG - chr1_3:14038445-14038464 None:intergenic 70.0%
GAGGGTCCCACGGAGGCCAA+CGG - chr1_3:14039957-14039976 None:intergenic 70.0%
CATGCAGGAGGGTCCCACGG+AGG - chr1_3:14039964-14039983 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 14036341 14041650 14036341 ID=Msa0105500;Name=Msa0105500
chr1_3 mRNA 14036341 14041650 14036341 ID=Msa0105500-mRNA-1;Parent=Msa0105500;Name=Msa0105500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=335|1|1|1|1|1|6|539|621
chr1_3 exon 14036341 14037867 14036341 ID=Msa0105500-mRNA-1:exon:5486;Parent=Msa0105500-mRNA-1
chr1_3 exon 14038272 14038557 14038272 ID=Msa0105500-mRNA-1:exon:5487;Parent=Msa0105500-mRNA-1
chr1_3 exon 14038744 14038829 14038744 ID=Msa0105500-mRNA-1:exon:5488;Parent=Msa0105500-mRNA-1
chr1_3 exon 14039840 14039997 14039840 ID=Msa0105500-mRNA-1:exon:5489;Parent=Msa0105500-mRNA-1
chr1_3 exon 14040852 14040928 14040852 ID=Msa0105500-mRNA-1:exon:5490;Parent=Msa0105500-mRNA-1
chr1_3 exon 14041045 14041650 14041045 ID=Msa0105500-mRNA-1:exon:5491;Parent=Msa0105500-mRNA-1
chr1_3 five_prime_UTR 14036341 14036675 14036341 ID=Msa0105500-mRNA-1:five_prime_utr;Parent=Msa0105500-mRNA-1
chr1_3 CDS 14036676 14037867 14036676 ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3 CDS 14038272 14038557 14038272 ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3 CDS 14038744 14038829 14038744 ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3 CDS 14039840 14039997 14039840 ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3 CDS 14040852 14040928 14040852 ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3 CDS 14041045 14041111 14041045 ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3 three_prime_UTR 14041112 14041650 14041112 ID=Msa0105500-mRNA-1:three_prime_utr;Parent=Msa0105500-mRNA-1
Gene Sequence

>Msa0105500

ATGATAACACTTAAAGATCTTTACACTGTCTTAACAGCAGTGGTTCCATTATATGTTGCTATGATCTTAGCCTACGGTTCGGTCCGTTGGTGGAAGATTTTCTCACCGGATCAATGTTCCGGTATAAACCGCTTCGTCGCGGTTTTCGCCGTACCTCTCCTTTCATTCCACTTCATCTCAACCAACAATCCATATCAAATGAACTTCAGATTCATAGCTGCAGACACACTTCAAAAAATCATCATGCTAGTAGCACTTTCATTATGGACATTGTTCACTAAAAATGGCAATTTAGAATGGATGATAACAATCTTTTCATTATCAACACTTCCTAACACTTTGGTTATGGGAATTCCTTTGTTAATTGCTATGTATGGTGATTATTCAGGTAGCTTAATGGTTCAAGTTGTGGTTCTTCAGTGTATCATTTGGTACACTCTTTTGCTTTTTCTTTTTGAGTACCGTGGTGCTAAGCTTTTAATCATGGAGCAGTTTCCAGAAACCGCGGCTTCCATTGTTTCCTTTAAGGTCGATTCGGATGTTATGTCGTTAGATGGAAGAGATTTTCTTGAAACTGATGCATCAGTTGGTGATGATGGGAAGTTACATGTTACTGTTAGGAAGTCTAACGCGTCGCGGAGGTCATTTATGATGAATACTCCGCGACCGTCAAATTTGACTGGAGCTGAGATTTATAGTCTCAGCTCCACCCCAAGAGGGTCTAATTTCAACCATCAGGAGTTTTACTCCATGATGGGTTATCAACCAAGACATTCCAATTTTGGGGCTAATGATTTGTATTCTGTCCAGTCTTCTTCTAGAGGACCAACTCCTAGACCTTCAAATTTCGAAGAAAATGGTGCAAGTTCTCCTAGATTCGGGTTTTATCCGGCAGCGCAAACTGTGCCTAATTCGTATCCGGTGCCAAACCCGGAATTCTCCTCTACTACTAAACCTGTGAAGAATCAGAATCAAAATTTGATGCCGCAACAACCGCAGGTTCAATTGCAGACAAAAGGTTCTCAGGATAAAGAGTTGCATATGTTTGTGTGGAGCTCAAGTGCTTCGCCGGTTTCGGAAAGTGCTGGCCTCAACGTGTTCCGAAATTCGGAACAATCGGAAGAGGGTGCTAAGGAGATCAGAATGGTGGTGGCTGATGAACATAATCAAAATGGTGAAACCAATAACAAAGGTGGTCAAGAAAAGGAAATTGGTGGGGAAGAGGACTTCAAGTTCAATGGGGTGAAGGTAGGAGAACAAGGAGAAGGACCCAATGGACCTAACAAGTTGGGCTCGAATTCAACGCCGGAGCTCCACCCTAAAGCCACCGGAGTCGCGGATTCAAGTGTCGGAAAACTCATGCCTCCGGCGAGCGTCATGACACGTCTCATACTCATTATGGTTTGGAGGAAACTTATCCGTAATCCAAACACTTATTCAAGTCTCATTGGTCTTATTTGGTCCCTTGTTGCCTTTAGGTGGGATGTTCATATGCCTAAAATAATAGAGAAATCAATTTCCATACTGTCTGATGCTGGTCTTGGAATGGCTATGTTTAGCTTAGGTCTGTTTATGGCTCTTCAACCCAAGATCATTGCATGTGGGAATTCTGTTGCTTCATTTGCCATGGCTATAAGATTCCTTACTGGTCCAGCAGTTATGGCAGCAGCTTCTATCGCCGTTGGCCTCCGTGGGACCCTCCTGCATGTAGCTATTGTTCAGGCTGCACTTCCACAAGGGATTGTTCCATTTGTGTTTGCAAAAGAGTACAATGTCCATCCAGCCATTCTTAGTACAGCGGTTATATTTGGTATGTTAATAGCCCTTCCAATTACTCTACTCTACTACATTCTCCTTGGTTTGTAA
Protein sequence

>Msa0105500

MITLKDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAVFAVPLLSFHFISTNNPYQMNFRFIAADTLQKIIMLVALSLWTLFTKNGNLEWMITIFSLSTLPNTLVMGIPLLIAMYGDYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETAASIVSFKVDSDVMSLDGRDFLETDASVGDDGKLHVTVRKSNASRRSFMMNTPRPSNLTGAEIYSLSSTPRGSNFNHQEFYSMMGYQPRHSNFGANDLYSVQSSSRGPTPRPSNFEENGASSPRFGFYPAAQTVPNSYPVPNPEFSSTTKPVKNQNQNLMPQQPQVQLQTKGSQDKELHMFVWSSSASPVSESAGLNVFRNSEQSEEGAKEIRMVVADEHNQNGETNNKGGQEKEIGGEEDFKFNGVKVGEQGEGPNGPNKLGSNSTPELHPKATGVADSSVGKLMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVAFRWDVHMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVASFAMAIRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL*