AlfalfaGEDB | Msa0105500

M. sativa cultivar zhongmu-4 / Msa0105500

KEGG: K13947
GO: GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009888 GO:0009914 GO:0009921 GO:0009926 GO:0009942 GO:0009958 GO:0009966 GO:0009986 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010154 GO:0010252 GO:0010315 GO:0010329 GO:0010646 GO:0010817 GO:0010928 GO:0012505 GO:0012506 GO:0015562 GO:0016020 GO:0016043 GO:0016049 GO:0016328 GO:0021700 GO:0022414 GO:0022622 GO:0022857 GO:0023051 GO:0030054 GO:0030154 GO:0031090 GO:0031982 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048583 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0080161 GO:0090558 GO:0090627 GO:0098796 GO:0098797 GO:0099402 GO:1905392
PFAM: PF03547.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105500	XP_013466518.1	99.839	621	1	0	1	621	1	621	0.0	1275

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105500	sp\|Q9S7Z8\|PIN3_ARATH	74.923	646	131	13	1	621	1	640	0.0	908

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105500	Q8GV75	99.839	621	1	0	1	621	1	621	0.0	1275

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0105500	0.801926	7.150187e-49	-8.615850e-47
Msa0000610	Msa0105500	0.833140	6.328879e-56	-8.615850e-47
Msa0001510	Msa0105500	0.886214	4.153925e-72	-8.615850e-47
Msa0001540	Msa0105500	0.821908	3.144194e-53	-8.615850e-47
Msa0002110	Msa0105500	0.836889	7.181633e-57	-8.615850e-47
Msa0002690	Msa0105500	0.890447	9.768728e-74	-8.615850e-47
Msa0002700	Msa0105500	0.891051	5.653143e-74	-8.615850e-47
Msa0003340	Msa0105500	0.844371	7.878082e-59	-8.615850e-47
Msa0004180	Msa0105500	0.892510	1.485282e-74	-8.615850e-47
Msa0005500	Msa0105500	0.825362	4.884561e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0105500	MtrunA17_Chr1g0160461	99.839	621	1	0	1	621	1	621	0.0	1275
Msa0105500	MtrunA17_Chr4g0044181	77.877	669	90	15	1	621	1	659	0.0	975
Msa0105500	MtrunA17_Chr6g0478431	63.281	640	180	13	1	621	1	604	0.0	759
Msa0105500	MtrunA17_Chr7g0255941	63.323	638	170	14	1	621	1	591	0.0	736
Msa0105500	MtrunA17_Chr4g0071571	58.779	655	206	12	1	621	1	625	0.0	713
Msa0105500	MtrunA17_Chr8g0393111	57.235	622	130	15	1	591	1	517	0.0	628
Msa0105500	MtrunA17_Chr1g0159341	47.943	632	213	19	1	621	1	527	2.13e-166	485
Msa0105500	MtrunA17_Chr4g0071551	74.178	213	54	1	1	212	1	213	7.42e-114	339
Msa0105500	MtrunA17_Chr2g0298971	49.402	251	102	5	1	248	1	229	4.77e-74	246
Msa0105500	MtrunA17_Chr2g0298971	39.271	247	101	5	401	600	273	517	3.57e-45	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0105500	AT1G70940.1	74.923	646	131	13	1	621	1	640	908
Msa0105500	AT2G01420.1	74.725	637	120	14	1	621	1	612	900
Msa0105500	AT2G01420.2	74.411	637	126	13	1	621	1	616	892
Msa0105500	AT1G23080.1	73.585	636	136	12	1	621	1	619	891
Msa0105500	AT1G23080.3	72.956	636	136	11	1	621	1	615	884
Msa0105500	AT1G23080.4	72.956	636	136	11	1	621	1	615	884
Msa0105500	AT1G23080.2	70.391	537	123	11	1	522	1	516	722
Msa0105500	AT5G57090.1	58.471	667	211	11	1	621	1	647	720
Msa0105500	AT2G01420.3	72.305	538	112	13	1	522	1	517	719
Msa0105500	AT1G73590.1	59.538	650	206	12	1	621	1	622	706

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Find 222 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGGAAAACATGGGAA+CGG	0.649795	1_3:+14041413	Msa0105500:three_prime_UTR
AAAATGGGAAAGAAAACGGT+TGG	0.570567	1_3:-14036559	None:intergenic
AAAGGAAACAATGGAAGCCG+CGG	0.630714	1_3:-14037178	None:intergenic
AAAGGAAATTGGTGGGGAAG+AGG	0.484370	1_3:+14038282	Msa0105500:CDS
AAATTCGGAACAATCGGAAG+AGG	0.564770	1_3:+14037779	Msa0105500:CDS
AAATTTATAATAGAAAATGA+AGG	0.557862	1_3:-14036582	None:intergenic
AAATTTGAAGGTCTAGGAGT+TGG	0.515304	1_3:-14037501	None:intergenic
AACAATAGCTACATGCAGGA+GGG	0.650303	1_3:-14039972	None:intergenic
AACACTTATTCAAGTCTCAT+TGG	0.389053	1_3:+14038508	Msa0105500:CDS
AACATCCGAATCGACCTTAA+AGG	0.272674	1_3:-14037196	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATAGAAACTAGAAAGAGA+AGG	-	chr1_3:14036421-14036440	None:intergenic	30.0%
AAGGAAAATGGGAAAGAAAA+CGG	-	chr1_3:14036566-14036585	None:intergenic	30.0%
TGGACATTGTTCACTAAAAA+TGG	+	chr1_3:14036940-14036959	Msa0105500:CDS	30.0%
CCATACATAGCAATTAACAA+AGG	-	chr1_3:14037033-14037052	None:intergenic	30.0%
CCTTTGTTAATTGCTATGTA+TGG	+	chr1_3:14037030-14037049	Msa0105500:CDS	30.0%
TGATTATTCAGGTAGCTTAA+TGG	+	chr1_3:14037053-14037072	Msa0105500:CDS	30.0%
CCTTCAAATTTCGAAGAAAA+TGG	+	chr1_3:14037513-14037532	Msa0105500:CDS	30.0%
GCTGATGAACATAATCAAAA+TGG	+	chr1_3:14037828-14037847	Msa0105500:CDS	30.0%
AATGGTGAAACCAATAACAA+AGG	+	chr1_3:14037846-14037865	Msa0105500:CDS	30.0%
AGGTTTAATCTTAGAACCAA+TGG	-	chr1_3:14038077-14038096	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	14036341	14041650	14036341	ID=Msa0105500;Name=Msa0105500
chr1_3	mRNA	14036341	14041650	14036341	ID=Msa0105500-mRNA-1;Parent=Msa0105500;Name=Msa0105500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=335\|1\|1\|1\|1\|1\|6\|539\|621
chr1_3	exon	14036341	14037867	14036341	ID=Msa0105500-mRNA-1:exon:5486;Parent=Msa0105500-mRNA-1
chr1_3	exon	14038272	14038557	14038272	ID=Msa0105500-mRNA-1:exon:5487;Parent=Msa0105500-mRNA-1
chr1_3	exon	14038744	14038829	14038744	ID=Msa0105500-mRNA-1:exon:5488;Parent=Msa0105500-mRNA-1
chr1_3	exon	14039840	14039997	14039840	ID=Msa0105500-mRNA-1:exon:5489;Parent=Msa0105500-mRNA-1
chr1_3	exon	14040852	14040928	14040852	ID=Msa0105500-mRNA-1:exon:5490;Parent=Msa0105500-mRNA-1
chr1_3	exon	14041045	14041650	14041045	ID=Msa0105500-mRNA-1:exon:5491;Parent=Msa0105500-mRNA-1
chr1_3	five_prime_UTR	14036341	14036675	14036341	ID=Msa0105500-mRNA-1:five_prime_utr;Parent=Msa0105500-mRNA-1
chr1_3	CDS	14036676	14037867	14036676	ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3	CDS	14038272	14038557	14038272	ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3	CDS	14038744	14038829	14038744	ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3	CDS	14039840	14039997	14039840	ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3	CDS	14040852	14040928	14040852	ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3	CDS	14041045	14041111	14041045	ID=Msa0105500-mRNA-1:cds;Parent=Msa0105500-mRNA-1
chr1_3	three_prime_UTR	14041112	14041650	14041112	ID=Msa0105500-mRNA-1:three_prime_utr;Parent=Msa0105500-mRNA-1

Gene Sequence

>Msa0105500

ATGATAACACTTAAAGATCTTTACACTGTCTTAACAGCAGTGGTTCCATTATATGTTGCTATGATCTTAGCCTACGGTTCGGTCCGTTGGTGGAAGATTTTCTCACCGGATCAATGTTCCGGTATAAACCGCTTCGTCGCGGTTTTCGCCGTACCTCTCCTTTCATTCCACTTCATCTCAACCAACAATCCATATCAAATGAACTTCAGATTCATAGCTGCAGACACACTTCAAAAAATCATCATGCTAGTAGCACTTTCATTATGGACATTGTTCACTAAAAATGGCAATTTAGAATGGATGATAACAATCTTTTCATTATCAACACTTCCTAACACTTTGGTTATGGGAATTCCTTTGTTAATTGCTATGTATGGTGATTATTCAGGTAGCTTAATGGTTCAAGTTGTGGTTCTTCAGTGTATCATTTGGTACACTCTTTTGCTTTTTCTTTTTGAGTACCGTGGTGCTAAGCTTTTAATCATGGAGCAGTTTCCAGAAACCGCGGCTTCCATTGTTTCCTTTAAGGTCGATTCGGATGTTATGTCGTTAGATGGAAGAGATTTTCTTGAAACTGATGCATCAGTTGGTGATGATGGGAAGTTACATGTTACTGTTAGGAAGTCTAACGCGTCGCGGAGGTCATTTATGATGAATACTCCGCGACCGTCAAATTTGACTGGAGCTGAGATTTATAGTCTCAGCTCCACCCCAAGAGGGTCTAATTTCAACCATCAGGAGTTTTACTCCATGATGGGTTATCAACCAAGACATTCCAATTTTGGGGCTAATGATTTGTATTCTGTCCAGTCTTCTTCTAGAGGACCAACTCCTAGACCTTCAAATTTCGAAGAAAATGGTGCAAGTTCTCCTAGATTCGGGTTTTATCCGGCAGCGCAAACTGTGCCTAATTCGTATCCGGTGCCAAACCCGGAATTCTCCTCTACTACTAAACCTGTGAAGAATCAGAATCAAAATTTGATGCCGCAACAACCGCAGGTTCAATTGCAGACAAAAGGTTCTCAGGATAAAGAGTTGCATATGTTTGTGTGGAGCTCAAGTGCTTCGCCGGTTTCGGAAAGTGCTGGCCTCAACGTGTTCCGAAATTCGGAACAATCGGAAGAGGGTGCTAAGGAGATCAGAATGGTGGTGGCTGATGAACATAATCAAAATGGTGAAACCAATAACAAAGGTGGTCAAGAAAAGGAAATTGGTGGGGAAGAGGACTTCAAGTTCAATGGGGTGAAGGTAGGAGAACAAGGAGAAGGACCCAATGGACCTAACAAGTTGGGCTCGAATTCAACGCCGGAGCTCCACCCTAAAGCCACCGGAGTCGCGGATTCAAGTGTCGGAAAACTCATGCCTCCGGCGAGCGTCATGACACGTCTCATACTCATTATGGTTTGGAGGAAACTTATCCGTAATCCAAACACTTATTCAAGTCTCATTGGTCTTATTTGGTCCCTTGTTGCCTTTAGGTGGGATGTTCATATGCCTAAAATAATAGAGAAATCAATTTCCATACTGTCTGATGCTGGTCTTGGAATGGCTATGTTTAGCTTAGGTCTGTTTATGGCTCTTCAACCCAAGATCATTGCATGTGGGAATTCTGTTGCTTCATTTGCCATGGCTATAAGATTCCTTACTGGTCCAGCAGTTATGGCAGCAGCTTCTATCGCCGTTGGCCTCCGTGGGACCCTCCTGCATGTAGCTATTGTTCAGGCTGCACTTCCACAAGGGATTGTTCCATTTGTGTTTGCAAAAGAGTACAATGTCCATCCAGCCATTCTTAGTACAGCGGTTATATTTGGTATGTTAATAGCCCTTCCAATTACTCTACTCTACTACATTCTCCTTGGTTTGTAA

Protein sequence

>Msa0105500

MITLKDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAVFAVPLLSFHFISTNNPYQMNFRFIAADTLQKIIMLVALSLWTLFTKNGNLEWMITIFSLSTLPNTLVMGIPLLIAMYGDYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETAASIVSFKVDSDVMSLDGRDFLETDASVGDDGKLHVTVRKSNASRRSFMMNTPRPSNLTGAEIYSLSSTPRGSNFNHQEFYSMMGYQPRHSNFGANDLYSVQSSSRGPTPRPSNFEENGASSPRFGFYPAAQTVPNSYPVPNPEFSSTTKPVKNQNQNLMPQQPQVQLQTKGSQDKELHMFVWSSSASPVSESAGLNVFRNSEQSEEGAKEIRMVVADEHNQNGETNNKGGQEKEIGGEEDFKFNGVKVGEQGEGPNGPNKLGSNSTPELHPKATGVADSSVGKLMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVAFRWDVHMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVASFAMAIRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL*