AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0993590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993590 MtrunA17_Chr6g0476641 98.734 158 2 0 1 158 1 158 1.31e-112 321
Msa0993590 MtrunA17_Chr4g0051941 43.421 152 64 6 9 158 2 133 5.08e-26 99.4
Msa0993590 MtrunA17_Chr6g0453151 55.682 88 35 2 71 158 116 199 2.25e-24 96.3
Msa0993590 MtrunA17_Chr2g0318521 48.361 122 53 3 42 158 14 130 2.29e-24 95.1
Msa0993590 MtrunA17_Chr6g0453181 54.444 90 37 2 69 158 47 132 2.48e-24 95.1
Msa0993590 MtrunA17_Chr6g0453141 55.682 88 35 2 71 158 49 132 4.29e-24 94.4
Msa0993590 MtrunA17_Chr5g0447531 55.682 88 35 2 71 158 49 132 1.62e-23 92.8
Msa0993590 MtrunA17_Chr6g0453161 40.789 152 69 5 7 158 269 399 2.21e-23 95.1
Msa0993590 MtrunA17_Chr6g0453161 54.545 88 36 2 71 158 51 134 1.92e-22 92.4
Msa0993590 MtrunA17_Chr1g0157481 44.318 88 47 1 71 158 107 192 7.53e-18 78.6
Msa0993590 MtrunA17_Chr8g0345631 48.649 74 33 1 74 147 61 129 3.96e-16 73.2
Msa0993590 MtrunA17_Chr2g0301081 47.297 74 34 1 74 147 60 128 4.96e-16 72.8
Msa0993590 MtrunA17_Chr3g0092091 50.877 57 28 0 91 147 63 119 3.47e-15 70.5
Msa0993590 MtrunA17_Chr3g0133901 42.647 68 37 1 91 158 68 133 3.80e-14 67.8
Msa0993590 MtrunA17_Chr6g0462031 49.057 53 27 0 91 143 56 108 9.21e-14 66.2
Msa0993590 MtrunA17_Chr2g0279001 41.176 68 37 1 91 155 73 140 2.26e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993590 AT4G10340.1 75.839 149 34 2 11 158 2 149 2.29e-71 216
Msa0993590 AT1G29930.1 43.226 155 66 5 4 158 1 133 9.05e-24 94.0
Msa0993590 AT5G54270.1 45.113 133 60 4 31 158 7 131 1.15e-23 93.6
Msa0993590 AT1G29920.1 49.020 102 48 2 57 158 36 133 1.58e-23 93.2
Msa0993590 AT1G29910.1 49.020 102 48 2 57 158 36 133 1.58e-23 93.2
Msa0993590 AT2G34420.1 49.020 102 48 2 57 158 34 131 2.99e-23 92.4
Msa0993590 AT2G05100.1 58.427 89 31 3 71 158 49 132 5.23e-23 92.0
Msa0993590 AT2G05070.1 58.427 89 31 3 71 158 49 132 5.45e-23 91.7
Msa0993590 AT3G27690.1 58.427 89 31 3 71 158 50 133 7.44e-23 91.7
Msa0993590 AT3G27690.2 58.427 89 31 3 71 158 82 165 7.96e-23 92.0
Msa0993590 AT2G34430.1 48.515 101 48 2 58 158 36 132 1.22e-22 90.9
Msa0993590 AT2G05100.2 58.427 89 31 3 71 158 49 132 2.23e-22 91.3
Msa0993590 AT1G76570.1 40.299 134 72 4 28 158 62 190 1.94e-20 85.9
Msa0993590 AT3G61470.1 48.649 74 33 1 74 147 50 118 1.50e-16 74.7
Msa0993590 AT3G47470.1 49.206 63 32 0 91 153 64 126 1.04e-15 72.0
Msa0993590 AT1G19150.1 44.595 74 36 1 74 147 63 131 1.35e-15 72.0
Msa0993590 AT3G54890.3 50.943 53 26 0 91 143 55 107 1.04e-14 67.8
Msa0993590 AT3G54890.2 50.943 53 26 0 91 143 55 107 3.55e-14 67.4
Msa0993590 AT3G54890.4 50.943 53 26 0 91 143 55 107 5.94e-14 67.0
Msa0993590 AT3G54890.1 50.943 53 26 0 91 143 55 107 7.01e-14 67.0
Msa0993590 AT1G45474.2 42.647 68 37 1 91 158 56 121 3.69e-12 62.8
Msa0993590 AT1G45474.1 42.647 68 37 1 91 158 56 121 3.69e-12 62.8
Msa0993590 AT1G15820.1 41.176 68 37 1 91 155 70 137 2.68e-11 60.1

Find 50 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGTGCAGCTTTCTTCTTT+TGG 0.285953 6_4:+66386449 None:intergenic
GTTGCACCACTGAATTTAAC+TGG 0.303133 6_4:+66386526 None:intergenic
CCTGAGGCCTTCAACAAATA+TGG 0.304749 6_4:-66384826 Msa0993590:CDS
ACATACTTGGCGAAGTCTTC+GGG 0.334071 6_4:+66385513 None:intergenic
ACCTTGAACCAAACTGCTTC+AGG 0.342619 6_4:+66384790 None:intergenic
AGCACCAAGCATTGCCCATC+TGG 0.347578 6_4:+66384864 None:intergenic
GACATACTTGGCGAAGTCTT+CGG 0.362129 6_4:+66385512 None:intergenic
TGGGCAATGCTTGGTGCTGC+TGG 0.373653 6_4:-66384859 Msa0993590:CDS
AGCTATGGTTACGATCCTTT+TGG 0.377709 6_4:-66385549 Msa0993590:CDS
GGAGTAGCCACTTTCTGCTT+TGG 0.379363 6_4:+66386424 None:intergenic
CTTCTTGCCAGACGGTCTCT+TGG 0.386703 6_4:-66385733 Msa0993590:CDS
GGCTTCTTGCTTAGACCAAA+AGG 0.435777 6_4:+66385534 None:intergenic
TCTACTGCAGCTGCTTCACT+TGG 0.436532 6_4:-66386571 Msa0993590:CDS
CTTGGAATGTCTGAAATGCT+TGG 0.439282 6_4:-66386553 Msa0993590:CDS
GCCACTTTCTGCTTTGGTGG+AGG 0.447166 6_4:+66386430 None:intergenic
TCCTGAAGCAGTTTGGTTCA+AGG 0.447410 6_4:-66384791 None:intergenic
ACTGTGGTCCTGAAGCAGTT+TGG 0.450252 6_4:-66384798 Msa0993590:CDS
GTTGGCTCCATATTTGTTGA+AGG 0.451119 6_4:+66384819 None:intergenic
CCATATTTGTTGAAGGCCTC+AGG 0.453560 6_4:+66384826 None:intergenic
ACTTCTCCGGTCAAGTACTC+AGG 0.457393 6_4:+66385696 None:intergenic
GTAGCCACTTTCTGCTTTGG+TGG 0.482184 6_4:+66386427 None:intergenic
TTGGCGAGTTCCTCGCTGGC+CGG 0.484863 6_4:+66386403 None:intergenic
ATGGACTAATGCAGATATCA+AGG 0.508883 6_4:-66384904 Msa0993590:intron
AGCTGCAGTAGAAGCAGCAA+TGG 0.510980 6_4:+66386582 None:intergenic
GATCTGTCCAAGAGACCGTC+TGG 0.514379 6_4:+66385726 None:intergenic
GTAGAAGTCACATACTCTCC+AGG 0.519801 6_4:+66385672 None:intergenic
GGCAAGAAGATCCTTCTGTC+CGG 0.520057 6_4:+66385747 None:intergenic
TGGTGGCAGGTCCGGACAGA+AGG 0.520994 6_4:-66385758 Msa0993590:intron
GTAGATGGAGTTGAAGAAGA+AGG 0.525039 6_4:+66386493 None:intergenic
GAGGAACTCGCCAAGTGGTA+TGG 0.528132 6_4:-66386394 Msa0993590:intron
TACTTGACCGGAGAAGTCCC+TGG 0.543225 6_4:-66385690 Msa0993590:CDS
ACCTCCACCAAAGCAGAAAG+TGG 0.547153 6_4:-66386431 Msa0993590:CDS
ATGAGTTGATTCATGCCAGA+TGG 0.547726 6_4:-66384879 Msa0993590:CDS
ATACTCTCCAGGGACTTCTC+CGG 0.548133 6_4:+66385683 None:intergenic
CATGCCAGATGGGCAATGCT+TGG 0.556994 6_4:-66384868 Msa0993590:CDS
AACTGCTTCAGGACCACAGT+TGG 0.560727 6_4:+66384801 None:intergenic
GAGATCCCTGAGTACTTGAC+CGG 0.562342 6_4:-66385702 Msa0993590:CDS
TGAGTTGATTCATGCCAGAT+GGG 0.567819 6_4:-66384878 Msa0993590:CDS
AAAGCAGAAAGTGGCTACTC+CGG 0.571671 6_4:-66386422 Msa0993590:CDS
GGAAATCCAGTTAAATTCAG+TGG 0.588045 6_4:-66386532 Msa0993590:CDS
TGCTGGATTCATCATTCCTG+AGG 0.589247 6_4:-66384842 Msa0993590:CDS
AGAAGCAGCAATGGAAGCCA+TGG 0.592749 6_4:+66386591 None:intergenic
TGGTGACTTACCATACCACT+TGG 0.598115 6_4:+66386384 None:intergenic
CTTCTCCGGTCAAGTACTCA+GGG 0.606025 6_4:+66385697 None:intergenic
AACAAATATGGAGCCAACTG+TGG 0.610263 6_4:-66384814 Msa0993590:CDS
AGAAGGATCTTCTTGCCAGA+CGG 0.619123 6_4:-66385741 Msa0993590:CDS
TAGAAGTCACATACTCTCCA+GGG 0.625313 6_4:+66385673 None:intergenic
AGTGGCTACTCCGGCCAGCG+AGG 0.669111 6_4:-66386413 Msa0993590:CDS
CCAGCGAGGAACTCGCCAAG+TGG 0.682354 6_4:-66386399 Msa0993590:CDS
TTAAATTCAGTGGTGCAACA+AGG 0.690996 6_4:-66386522 Msa0993590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGTAATTTTTTGAAAA+TGG - chr6_4:66385264-66385283 Msa0993590:intron 10.0%
!!! AACTTTTTTTATTGAAATTT+TGG - chr6_4:66385772-66385791 Msa0993590:intron 10.0%
!!! ATATTGTAATTTTTTGAAAA+TGG - chr6_4:66385264-66385283 Msa0993590:intron 10.0%
!!! AACTTTTTTTATTGAAATTT+TGG - chr6_4:66385772-66385791 Msa0993590:intron 10.0%
!! ATCATTAATCAATGAAAATA+AGG + chr6_4:66385987-66386006 None:intergenic 15.0%
!!! TTTTCATTGATTAATGATTT+TGG - chr6_4:66385989-66386008 Msa0993590:intron 15.0%
!!! TTTATGAAATTTTAACAACT+AGG - chr6_4:66386232-66386251 Msa0993590:intron 15.0%
!! TCAAAAAAAAAAAAACAACT+AGG - chr6_4:66386274-66386293 Msa0993590:intron 15.0%
!! ATCATTAATCAATGAAAATA+AGG + chr6_4:66385987-66386006 None:intergenic 15.0%
!!! TTTTCATTGATTAATGATTT+TGG - chr6_4:66385989-66386008 Msa0993590:intron 15.0%
!!! TTTATGAAATTTTAACAACT+AGG - chr6_4:66386232-66386251 Msa0993590:intron 15.0%
!! TCAAAAAAAAAAAAACAACT+AGG - chr6_4:66386274-66386293 Msa0993590:intron 15.0%
!! CATTGTATAAAATTCTCTTA+AGG - chr6_4:66385056-66385075 Msa0993590:intron 20.0%
!! TAAAATTCTCTTAAGGTATA+AGG - chr6_4:66385063-66385082 Msa0993590:intron 20.0%
!! TATACTATGAAACTTCAATA+CGG - chr6_4:66385384-66385403 Msa0993590:intron 20.0%
!!! TCAATCAATGCATTTTTTTT+TGG + chr6_4:66385553-66385572 None:intergenic 20.0%
!!! TTTTGGTTCTTTTGATAATT+TGG - chr6_4:66385603-66385622 Msa0993590:intron 20.0%
!! CATTGTATAAAATTCTCTTA+AGG - chr6_4:66385056-66385075 Msa0993590:intron 20.0%
!! TAAAATTCTCTTAAGGTATA+AGG - chr6_4:66385063-66385082 Msa0993590:intron 20.0%
!! TATACTATGAAACTTCAATA+CGG - chr6_4:66385384-66385403 Msa0993590:intron 20.0%
!!! TCAATCAATGCATTTTTTTT+TGG + chr6_4:66385553-66385572 None:intergenic 20.0%
!!! TTTTGGTTCTTTTGATAATT+TGG - chr6_4:66385603-66385622 Msa0993590:intron 20.0%
!! TAAGACGAGATTTTAAATTG+TGG - chr6_4:66385192-66385211 Msa0993590:intron 25.0%
!! ACTATAGTTGCTAAAACTTT+TGG - chr6_4:66385586-66385605 Msa0993590:intron 25.0%
! TTGTAAGATTTAGACATACT+TGG + chr6_4:66385884-66385903 None:intergenic 25.0%
! AAAATAAACCTAAAATGCAG+TGG + chr6_4:66386076-66386095 None:intergenic 25.0%
!!! GCATTTTAGGTTTATTTTTG+CGG - chr6_4:66386078-66386097 Msa0993590:intron 25.0%
! AAAATAAGTCTCAAATTCAG+TGG - chr6_4:66386200-66386219 Msa0993590:intron 25.0%
!! TTTTCTGATTTAGAAACTGA+AGG - chr6_4:66386305-66386324 Msa0993590:intron 25.0%
! AATCGTGAATCAACAAAAAT+AGG - chr6_4:66386333-66386352 Msa0993590:intron 25.0%
!! TAAGACGAGATTTTAAATTG+TGG - chr6_4:66385192-66385211 Msa0993590:intron 25.0%
!! ACTATAGTTGCTAAAACTTT+TGG - chr6_4:66385586-66385605 Msa0993590:intron 25.0%
! TTGTAAGATTTAGACATACT+TGG + chr6_4:66385884-66385903 None:intergenic 25.0%
! AAAATAAACCTAAAATGCAG+TGG + chr6_4:66386076-66386095 None:intergenic 25.0%
!!! GCATTTTAGGTTTATTTTTG+CGG - chr6_4:66386078-66386097 Msa0993590:intron 25.0%
! AAAATAAGTCTCAAATTCAG+TGG - chr6_4:66386200-66386219 Msa0993590:intron 25.0%
!! TTTTCTGATTTAGAAACTGA+AGG - chr6_4:66386305-66386324 Msa0993590:intron 25.0%
! AATCGTGAATCAACAAAAAT+AGG - chr6_4:66386333-66386352 Msa0993590:intron 25.0%
ACATGAGAACAAAACATTGT+TGG + chr6_4:66385020-66385039 None:intergenic 30.0%
ATGCTTAGTATTGCATAGAA+TGG - chr6_4:66385225-66385244 Msa0993590:intron 30.0%
!! TGGTTCTTTTGATAATTTGG+TGG - chr6_4:66385606-66385625 Msa0993590:intron 30.0%
ATTGAGAACATGAGTTAAAG+GGG + chr6_4:66385742-66385761 None:intergenic 30.0%
GATTGAGAACATGAGTTAAA+GGG + chr6_4:66385743-66385762 None:intergenic 30.0%
TGATTGAGAACATGAGTTAA+AGG + chr6_4:66385744-66385763 None:intergenic 30.0%
!!! GTCATTGTGACTTTTTTTGA+GGG + chr6_4:66386126-66386145 None:intergenic 30.0%
!!! TGTCATTGTGACTTTTTTTG+AGG + chr6_4:66386127-66386146 None:intergenic 30.0%
! ACAATGACAATGCATGTTTT+TGG - chr6_4:66386138-66386157 Msa0993590:intron 30.0%
! ACAACTAGGTGACAATATTT+TGG - chr6_4:66386246-66386265 Msa0993590:intron 30.0%
CTTATGTTACGTTAATTGTG+TGG - chr6_4:66386425-66386444 Msa0993590:CDS 30.0%
ACATGAGAACAAAACATTGT+TGG + chr6_4:66385020-66385039 None:intergenic 30.0%
ATGCTTAGTATTGCATAGAA+TGG - chr6_4:66385225-66385244 Msa0993590:intron 30.0%
!! TGGTTCTTTTGATAATTTGG+TGG - chr6_4:66385606-66385625 Msa0993590:intron 30.0%
ATTGAGAACATGAGTTAAAG+GGG + chr6_4:66385742-66385761 None:intergenic 30.0%
GATTGAGAACATGAGTTAAA+GGG + chr6_4:66385743-66385762 None:intergenic 30.0%
TGATTGAGAACATGAGTTAA+AGG + chr6_4:66385744-66385763 None:intergenic 30.0%
!!! GTCATTGTGACTTTTTTTGA+GGG + chr6_4:66386126-66386145 None:intergenic 30.0%
!!! TGTCATTGTGACTTTTTTTG+AGG + chr6_4:66386127-66386146 None:intergenic 30.0%
! ACAATGACAATGCATGTTTT+TGG - chr6_4:66386138-66386157 Msa0993590:intron 30.0%
! ACAACTAGGTGACAATATTT+TGG - chr6_4:66386246-66386265 Msa0993590:intron 30.0%
CTTATGTTACGTTAATTGTG+TGG - chr6_4:66386425-66386444 Msa0993590:CDS 30.0%
GGAAATCCAGTTAAATTCAG+TGG - chr6_4:66384849-66384868 Msa0993590:CDS 35.0%
TTAAATTCAGTGGTGCAACA+AGG - chr6_4:66384859-66384878 Msa0993590:CDS 35.0%
!! GAAAAGAGCAACAGTTTTGA+AGG + chr6_4:66384913-66384932 None:intergenic 35.0%
AGTGCATGTTTGAATTATCG+CGG - chr6_4:66385319-66385338 Msa0993590:intron 35.0%
! AATCACAGTGTGTGGTATTT+TGG - chr6_4:66385354-66385373 Msa0993590:intron 35.0%
TGAGTTAAGCAAAATCAAGG+TGG + chr6_4:66385412-66385431 None:intergenic 35.0%
TGGTGAGTTAAGCAAAATCA+AGG + chr6_4:66385415-66385434 None:intergenic 35.0%
AGTTGCGTAAAAATCACGTT+TGG - chr6_4:66385460-66385479 Msa0993590:intron 35.0%
!! TCTTTTGATAATTTGGTGGC+AGG - chr6_4:66385610-66385629 Msa0993590:intron 35.0%
AGAGTATGTGACTTCTACTT+TGG - chr6_4:66385714-66385733 Msa0993590:CDS 35.0%
AAACCTAAAATGCAGTGGTT+GGG + chr6_4:66386071-66386090 None:intergenic 35.0%
TAAACCTAAAATGCAGTGGT+TGG + chr6_4:66386072-66386091 None:intergenic 35.0%
ATAAGTCTCAAATTCAGTGG+CGG - chr6_4:66386203-66386222 Msa0993590:intron 35.0%
ACGTTAATTGTGTGGCAAAT+TGG - chr6_4:66386433-66386452 Msa0993590:CDS 35.0%
ATGCTATGGTGAATGATTGA+TGG - chr6_4:66386458-66386477 Msa0993590:CDS 35.0%
! ATGGACTAATGCAGATATCA+AGG - chr6_4:66386477-66386496 Msa0993590:CDS 35.0%
GGAAATCCAGTTAAATTCAG+TGG - chr6_4:66384849-66384868 Msa0993590:CDS 35.0%
TTAAATTCAGTGGTGCAACA+AGG - chr6_4:66384859-66384878 Msa0993590:CDS 35.0%
!! GAAAAGAGCAACAGTTTTGA+AGG + chr6_4:66384913-66384932 None:intergenic 35.0%
AGTGCATGTTTGAATTATCG+CGG - chr6_4:66385319-66385338 Msa0993590:intron 35.0%
! AATCACAGTGTGTGGTATTT+TGG - chr6_4:66385354-66385373 Msa0993590:intron 35.0%
TGAGTTAAGCAAAATCAAGG+TGG + chr6_4:66385412-66385431 None:intergenic 35.0%
TGGTGAGTTAAGCAAAATCA+AGG + chr6_4:66385415-66385434 None:intergenic 35.0%
AGTTGCGTAAAAATCACGTT+TGG - chr6_4:66385460-66385479 Msa0993590:intron 35.0%
!! TCTTTTGATAATTTGGTGGC+AGG - chr6_4:66385610-66385629 Msa0993590:intron 35.0%
AGAGTATGTGACTTCTACTT+TGG - chr6_4:66385714-66385733 Msa0993590:CDS 35.0%
AAACCTAAAATGCAGTGGTT+GGG + chr6_4:66386071-66386090 None:intergenic 35.0%
TAAACCTAAAATGCAGTGGT+TGG + chr6_4:66386072-66386091 None:intergenic 35.0%
ATAAGTCTCAAATTCAGTGG+CGG - chr6_4:66386203-66386222 Msa0993590:intron 35.0%
ACGTTAATTGTGTGGCAAAT+TGG - chr6_4:66386433-66386452 Msa0993590:CDS 35.0%
ATGCTATGGTGAATGATTGA+TGG - chr6_4:66386458-66386477 Msa0993590:CDS 35.0%
! ATGGACTAATGCAGATATCA+AGG - chr6_4:66386477-66386496 Msa0993590:CDS 35.0%
! CTTGGAATGTCTGAAATGCT+TGG - chr6_4:66384828-66384847 Msa0993590:CDS 40.0%
GTTGCACCACTGAATTTAAC+TGG + chr6_4:66384858-66384877 None:intergenic 40.0%
GTAGATGGAGTTGAAGAAGA+AGG + chr6_4:66384891-66384910 None:intergenic 40.0%
!!! GCAACAGTTTTGAAGGTAGA+TGG + chr6_4:66384906-66384925 None:intergenic 40.0%
TTGAATTATCGCGGTGAGTT+TGG - chr6_4:66385328-66385347 Msa0993590:intron 40.0%
! TTTACGCATGGTTGGATTAG+TGG + chr6_4:66385435-66385454 None:intergenic 40.0%
ACTCTTTCTTTACGCATGGT+TGG + chr6_4:66385443-66385462 None:intergenic 40.0%
TAGAAGTCACATACTCTCCA+GGG + chr6_4:66385711-66385730 None:intergenic 40.0%
TATGTGTGTCTATGCAGCTA+TGG - chr6_4:66385817-66385836 Msa0993590:intron 40.0%
! AGCTATGGTTACGATCCTTT+TGG - chr6_4:66385832-66385851 Msa0993590:intron 40.0%
! TTTCCCAACCACTGCATTTT+AGG - chr6_4:66386065-66386084 Msa0993590:intron 40.0%
!! ATGAGTTGATTCATGCCAGA+TGG - chr6_4:66386502-66386521 Msa0993590:CDS 40.0%
!! TGAGTTGATTCATGCCAGAT+GGG - chr6_4:66386503-66386522 Msa0993590:CDS 40.0%
! GTTGGCTCCATATTTGTTGA+AGG + chr6_4:66386565-66386584 None:intergenic 40.0%
AACAAATATGGAGCCAACTG+TGG - chr6_4:66386567-66386586 Msa0993590:CDS 40.0%
! CTTGGAATGTCTGAAATGCT+TGG - chr6_4:66384828-66384847 Msa0993590:CDS 40.0%
GTTGCACCACTGAATTTAAC+TGG + chr6_4:66384858-66384877 None:intergenic 40.0%
GTAGATGGAGTTGAAGAAGA+AGG + chr6_4:66384891-66384910 None:intergenic 40.0%
!!! GCAACAGTTTTGAAGGTAGA+TGG + chr6_4:66384906-66384925 None:intergenic 40.0%
TTGAATTATCGCGGTGAGTT+TGG - chr6_4:66385328-66385347 Msa0993590:intron 40.0%
! TTTACGCATGGTTGGATTAG+TGG + chr6_4:66385435-66385454 None:intergenic 40.0%
ACTCTTTCTTTACGCATGGT+TGG + chr6_4:66385443-66385462 None:intergenic 40.0%
TAGAAGTCACATACTCTCCA+GGG + chr6_4:66385711-66385730 None:intergenic 40.0%
TATGTGTGTCTATGCAGCTA+TGG - chr6_4:66385817-66385836 Msa0993590:intron 40.0%
! AGCTATGGTTACGATCCTTT+TGG - chr6_4:66385832-66385851 Msa0993590:intron 40.0%
! TTTCCCAACCACTGCATTTT+AGG - chr6_4:66386065-66386084 Msa0993590:intron 40.0%
!! ATGAGTTGATTCATGCCAGA+TGG - chr6_4:66386502-66386521 Msa0993590:CDS 40.0%
!! TGAGTTGATTCATGCCAGAT+GGG - chr6_4:66386503-66386522 Msa0993590:CDS 40.0%
! GTTGGCTCCATATTTGTTGA+AGG + chr6_4:66386565-66386584 None:intergenic 40.0%
AACAAATATGGAGCCAACTG+TGG - chr6_4:66386567-66386586 Msa0993590:CDS 40.0%
! GAGGTGCAGCTTTCTTCTTT+TGG + chr6_4:66384935-66384954 None:intergenic 45.0%
AAAGCAGAAAGTGGCTACTC+CGG - chr6_4:66384959-66384978 Msa0993590:intron 45.0%
TGGTGACTTACCATACCACT+TGG + chr6_4:66385000-66385019 None:intergenic 45.0%
TTTGGCAGAATCACAGTGTG+TGG - chr6_4:66385346-66385365 Msa0993590:intron 45.0%
CGCAACTCTTTCTTTACGCA+TGG + chr6_4:66385447-66385466 None:intergenic 45.0%
! TGATAATTTGGTGGCAGGTC+CGG - chr6_4:66385615-66385634 Msa0993590:intron 45.0%
AGAAGGATCTTCTTGCCAGA+CGG - chr6_4:66385640-66385659 Msa0993590:intron 45.0%
GTAGAAGTCACATACTCTCC+AGG + chr6_4:66385712-66385731 None:intergenic 45.0%
GGCTTCTTGCTTAGACCAAA+AGG + chr6_4:66385850-66385869 None:intergenic 45.0%
ACATACTTGGCGAAGTCTTC+GGG + chr6_4:66385871-66385890 None:intergenic 45.0%
GACATACTTGGCGAAGTCTT+CGG + chr6_4:66385872-66385891 None:intergenic 45.0%
GTGGCAAATTGGCAATGCTA+TGG - chr6_4:66386444-66386463 Msa0993590:CDS 45.0%
TGCTGGATTCATCATTCCTG+AGG - chr6_4:66386539-66386558 Msa0993590:CDS 45.0%
! CCATATTTGTTGAAGGCCTC+AGG + chr6_4:66386558-66386577 None:intergenic 45.0%
CCTGAGGCCTTCAACAAATA+TGG - chr6_4:66386555-66386574 Msa0993590:CDS 45.0%
! GAGGTGCAGCTTTCTTCTTT+TGG + chr6_4:66384935-66384954 None:intergenic 45.0%
AAAGCAGAAAGTGGCTACTC+CGG - chr6_4:66384959-66384978 Msa0993590:intron 45.0%
TGGTGACTTACCATACCACT+TGG + chr6_4:66385000-66385019 None:intergenic 45.0%
TTTGGCAGAATCACAGTGTG+TGG - chr6_4:66385346-66385365 Msa0993590:intron 45.0%
CGCAACTCTTTCTTTACGCA+TGG + chr6_4:66385447-66385466 None:intergenic 45.0%
! TGATAATTTGGTGGCAGGTC+CGG - chr6_4:66385615-66385634 Msa0993590:intron 45.0%
AGAAGGATCTTCTTGCCAGA+CGG - chr6_4:66385640-66385659 Msa0993590:intron 45.0%
GTAGAAGTCACATACTCTCC+AGG + chr6_4:66385712-66385731 None:intergenic 45.0%
GGCTTCTTGCTTAGACCAAA+AGG + chr6_4:66385850-66385869 None:intergenic 45.0%
ACATACTTGGCGAAGTCTTC+GGG + chr6_4:66385871-66385890 None:intergenic 45.0%
GACATACTTGGCGAAGTCTT+CGG + chr6_4:66385872-66385891 None:intergenic 45.0%
GTGGCAAATTGGCAATGCTA+TGG - chr6_4:66386444-66386463 Msa0993590:CDS 45.0%
TGCTGGATTCATCATTCCTG+AGG - chr6_4:66386539-66386558 Msa0993590:CDS 45.0%
! CCATATTTGTTGAAGGCCTC+AGG + chr6_4:66386558-66386577 None:intergenic 45.0%
CCTGAGGCCTTCAACAAATA+TGG - chr6_4:66386555-66386574 Msa0993590:CDS 45.0%
AGCTGCAGTAGAAGCAGCAA+TGG + chr6_4:66384802-66384821 None:intergenic 50.0%
TCTACTGCAGCTGCTTCACT+TGG - chr6_4:66384810-66384829 Msa0993590:CDS 50.0%
ACCTCCACCAAAGCAGAAAG+TGG - chr6_4:66384950-66384969 Msa0993590:intron 50.0%
! GTAGCCACTTTCTGCTTTGG+TGG + chr6_4:66384957-66384976 None:intergenic 50.0%
! GGAGTAGCCACTTTCTGCTT+TGG + chr6_4:66384960-66384979 None:intergenic 50.0%
GGCAAGAAGATCCTTCTGTC+CGG + chr6_4:66385637-66385656 None:intergenic 50.0%
GAGATCCCTGAGTACTTGAC+CGG - chr6_4:66385679-66385698 Msa0993590:intron 50.0%
CTTCTCCGGTCAAGTACTCA+GGG + chr6_4:66385687-66385706 None:intergenic 50.0%
ACTTCTCCGGTCAAGTACTC+AGG + chr6_4:66385688-66385707 None:intergenic 50.0%
ATACTCTCCAGGGACTTCTC+CGG + chr6_4:66385701-66385720 None:intergenic 50.0%
AACTGCTTCAGGACCACAGT+TGG + chr6_4:66386583-66386602 None:intergenic 50.0%
ACTGTGGTCCTGAAGCAGTT+TGG - chr6_4:66386583-66386602 Msa0993590:CDS 50.0%
AGCTGCAGTAGAAGCAGCAA+TGG + chr6_4:66384802-66384821 None:intergenic 50.0%
TCTACTGCAGCTGCTTCACT+TGG - chr6_4:66384810-66384829 Msa0993590:CDS 50.0%
ACCTCCACCAAAGCAGAAAG+TGG - chr6_4:66384950-66384969 Msa0993590:intron 50.0%
! GTAGCCACTTTCTGCTTTGG+TGG + chr6_4:66384957-66384976 None:intergenic 50.0%
! GGAGTAGCCACTTTCTGCTT+TGG + chr6_4:66384960-66384979 None:intergenic 50.0%
GGCAAGAAGATCCTTCTGTC+CGG + chr6_4:66385637-66385656 None:intergenic 50.0%
GAGATCCCTGAGTACTTGAC+CGG - chr6_4:66385679-66385698 Msa0993590:intron 50.0%
CTTCTCCGGTCAAGTACTCA+GGG + chr6_4:66385687-66385706 None:intergenic 50.0%
ACTTCTCCGGTCAAGTACTC+AGG + chr6_4:66385688-66385707 None:intergenic 50.0%
ATACTCTCCAGGGACTTCTC+CGG + chr6_4:66385701-66385720 None:intergenic 50.0%
AACTGCTTCAGGACCACAGT+TGG + chr6_4:66386583-66386602 None:intergenic 50.0%
ACTGTGGTCCTGAAGCAGTT+TGG - chr6_4:66386583-66386602 Msa0993590:CDS 50.0%
! GCCACTTTCTGCTTTGGTGG+AGG + chr6_4:66384954-66384973 None:intergenic 55.0%
GAGGAACTCGCCAAGTGGTA+TGG - chr6_4:66384987-66385006 Msa0993590:intron 55.0%
CTTCTTGCCAGACGGTCTCT+TGG - chr6_4:66385648-66385667 Msa0993590:intron 55.0%
GATCTGTCCAAGAGACCGTC+TGG + chr6_4:66385658-66385677 None:intergenic 55.0%
TACTTGACCGGAGAAGTCCC+TGG - chr6_4:66385691-66385710 Msa0993590:CDS 55.0%
CATGCCAGATGGGCAATGCT+TGG - chr6_4:66386513-66386532 Msa0993590:CDS 55.0%
! AGCACCAAGCATTGCCCATC+TGG + chr6_4:66386520-66386539 None:intergenic 55.0%
! GCCACTTTCTGCTTTGGTGG+AGG + chr6_4:66384954-66384973 None:intergenic 55.0%
GAGGAACTCGCCAAGTGGTA+TGG - chr6_4:66384987-66385006 Msa0993590:intron 55.0%
CTTCTTGCCAGACGGTCTCT+TGG - chr6_4:66385648-66385667 Msa0993590:intron 55.0%
GATCTGTCCAAGAGACCGTC+TGG + chr6_4:66385658-66385677 None:intergenic 55.0%
TACTTGACCGGAGAAGTCCC+TGG - chr6_4:66385691-66385710 Msa0993590:CDS 55.0%
CATGCCAGATGGGCAATGCT+TGG - chr6_4:66386513-66386532 Msa0993590:CDS 55.0%
! AGCACCAAGCATTGCCCATC+TGG + chr6_4:66386520-66386539 None:intergenic 55.0%
!! TGGGCAATGCTTGGTGCTGC+TGG - chr6_4:66386522-66386541 Msa0993590:CDS 60.0%
!! TGGGCAATGCTTGGTGCTGC+TGG - chr6_4:66386522-66386541 Msa0993590:CDS 60.0%
TTGGCGAGTTCCTCGCTGGC+CGG + chr6_4:66384981-66385000 None:intergenic 65.0%
CCACTTGGCGAGTTCCTCGC+TGG + chr6_4:66384985-66385004 None:intergenic 65.0%
CCAGCGAGGAACTCGCCAAG+TGG - chr6_4:66384982-66385001 Msa0993590:intron 65.0%
TGGTGGCAGGTCCGGACAGA+AGG - chr6_4:66385623-66385642 Msa0993590:intron 65.0%
TTGGCGAGTTCCTCGCTGGC+CGG + chr6_4:66384981-66385000 None:intergenic 65.0%
CCACTTGGCGAGTTCCTCGC+TGG + chr6_4:66384985-66385004 None:intergenic 65.0%
CCAGCGAGGAACTCGCCAAG+TGG - chr6_4:66384982-66385001 Msa0993590:intron 65.0%
TGGTGGCAGGTCCGGACAGA+AGG - chr6_4:66385623-66385642 Msa0993590:intron 65.0%
AGTGGCTACTCCGGCCAGCG+AGG - chr6_4:66384968-66384987 Msa0993590:intron 70.0%
AGTGGCTACTCCGGCCAGCG+AGG - chr6_4:66384968-66384987 Msa0993590:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 66384792 66386611 66384792 ID=Msa0993590;Name=Msa0993590
chr6_4 mRNA 66384792 66386611 66384792 ID=Msa0993590-mRNA-1;Parent=Msa0993590;Name=Msa0993590-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|1|0.5|1|1|1|4|0|158
chr6_4 exon 66386395 66386611 66386395 ID=Msa0993590-mRNA-1:exon:12402;Parent=Msa0993590-mRNA-1
chr6_4 exon 66385687 66385771 66385687 ID=Msa0993590-mRNA-1:exon:12401;Parent=Msa0993590-mRNA-1
chr6_4 exon 66385519 66385569 66385519 ID=Msa0993590-mRNA-1:exon:12400;Parent=Msa0993590-mRNA-1
chr6_4 exon 66384792 66384912 66384792 ID=Msa0993590-mRNA-1:exon:12399;Parent=Msa0993590-mRNA-1
chr6_4 CDS 66386395 66386611 66386395 ID=Msa0993590-mRNA-1:cds;Parent=Msa0993590-mRNA-1
chr6_4 CDS 66385687 66385771 66385687 ID=Msa0993590-mRNA-1:cds;Parent=Msa0993590-mRNA-1
chr6_4 CDS 66385519 66385569 66385519 ID=Msa0993590-mRNA-1:cds;Parent=Msa0993590-mRNA-1
chr6_4 CDS 66384792 66384912 66384792 ID=Msa0993590-mRNA-1:cds;Parent=Msa0993590-mRNA-1
Gene Sequence

>Msa0993590

ATGGCTTCCATTGCTGCTTCTACTGCAGCTGCTTCACTTGGAATGTCTGAAATGCTTGGAAATCCAGTTAAATTCAGTGGTGCAACAAGGTCTGTTCCTTCTTCTTCAACTCCATCTACCTTCAAAACTGTTGCTCTTTTCCAAAAGAAGAAAGCTGCACCTCCACCAAAGCAGAAAGTGGCTACTCCGGCCAGCGAGGAACTCGCCAAGTGGTATGGTCCGGACAGAAGGATCTTCTTGCCAGACGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTCCCTGGAGACTATGGTTACGATCCTTTTGGTCTAAGCAAGAAGCCCGAAGACTTCGCCAAATATCAAGGATATGAGTTGATTCATGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCCAACTGTGGTCCTGAAGCAGTTTGGTTCAAG

Protein sequence

>Msa0993590

MASIAASTAAASLGMSEMLGNPVKFSGATRSVPSSSTPSTFKTVALFQKKKAAPPPKQKVATPASEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQGYELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFK