AlfalfaGEDB | Msa1332870

M. sativa cultivar zhongmu-4 / Msa1332870

KEGG: -
GO: -
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1332870	sp\|O04425\|FCA_ARATH	46.542	694	307	17	62	730	92	746	2.41e-156	474

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1332870	G7JNZ3	98.507	737	8	1	1	734	1	737	0.0	1462

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013050	Msa1332870	0.809555	1.785831e-50	-8.615850e-47
Msa0033980	Msa1332870	-0.801116	1.048163e-48	-8.615850e-47
Msa0069260	Msa1332870	-0.816076	6.661346e-52	-8.615850e-47
Msa0069310	Msa1332870	-0.838627	2.570394e-57	-8.615850e-47
Msa0074950	Msa1332870	0.811939	5.446884e-51	-8.615850e-47
Msa0081930	Msa1332870	-0.814259	1.687271e-51	-8.615850e-47
Msa0085360	Msa1332870	0.804915	1.717476e-49	-8.615850e-47
Msa0097990	Msa1332870	-0.810748	9.880344e-51	-8.615850e-47
Msa0112560	Msa1332870	-0.801494	8.769035e-49	-8.615850e-47
Msa0128020	Msa1332870	-0.805842	1.098009e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1332870	MtrunA17_Chr4g0068631	98.507	737	8	1	1	734	1	737	0.0	1462
Msa1332870	MtrunA17_Chr7g0270201	45.887	231	105	3	80	295	66	291	1.90e-62	217
Msa1332870	MtrunA17_Chr7g0270201	28.270	237	126	7	428	661	284	479	8.51e-11	65.1
Msa1332870	MtrunA17_Chr7g0268551	48.315	178	89	1	88	265	16	190	6.84e-52	186
Msa1332870	MtrunA17_Chr3g0110211	36.612	183	104	7	88	265	25	200	3.61e-21	96.3
Msa1332870	MtrunA17_Chr7g0276201	31.757	148	89	2	88	234	104	240	5.35e-17	84.7
Msa1332870	MtrunA17_Chr6g0449481	28.821	229	121	9	72	282	37	241	1.53e-16	82.4
Msa1332870	MtrunA17_Chr8g0335981	30.508	177	102	6	89	258	216	378	8.39e-15	78.6
Msa1332870	MtrunA17_Chr3g0120721	29.000	200	127	5	63	261	1	186	5.86e-14	73.9
Msa1332870	MtrunA17_Chr4g0044541	24.645	211	136	5	71	265	196	399	1.91e-13	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1332870	AT4G16280.4	51.215	576	237	14	62	630	17	555	1.03e-158	475
Msa1332870	AT4G16280.2	46.542	694	307	17	62	730	92	746	2.45e-157	474
Msa1332870	AT4G16280.3	53.079	471	185	12	62	525	92	533	3.89e-140	422
Msa1332870	AT4G16280.1	43.765	425	197	13	211	630	1	388	2.43e-70	239
Msa1332870	AT2G47310.1	51.759	199	89	2	77	269	100	297	1.28e-61	215
Msa1332870	AT1G03457.1	47.753	178	90	1	88	265	12	186	3.71e-48	176
Msa1332870	AT1G03457.2	46.196	184	93	1	88	265	12	195	1.04e-47	175
Msa1332870	AT4G03110.1	45.763	177	93	1	88	264	18	191	4.04e-47	173
Msa1332870	AT4G03110.3	45.763	177	93	1	88	264	18	191	2.20e-46	171
Msa1332870	AT4G03110.2	45.763	177	93	1	88	264	18	191	2.28e-46	171

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Find 274 sgRNAs with CRISPR-Local

Find 914 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCCTGCTGACTTTG+AGG	0.423451	8_4:-52849202	None:intergenic
AAACCACTACCAACCCTACC+CGG	0.586473	8_4:-52840723	None:intergenic
AAACGCGGGTTTCCGTTCTC+TGG	0.431929	8_4:+52840834	Msa1332870:CDS
AACAATTGAGCTAACTGAGA+AGG	0.569868	8_4:-52849358	None:intergenic
AACCACCCGGACTTCGACGG+TGG	0.577595	8_4:-52840647	None:intergenic
AACCACCGTCGAAGTCCGGG+TGG	0.712649	8_4:+52840645	Msa1332870:CDS
AACCTGGAATCTCCTTGACG+AGG	0.695885	8_4:-52846961	None:intergenic
AACTCATGAATGCAAATATA+TGG	0.283539	8_4:-52851882	None:intergenic
AACTCCTGAGATGATTGAAT+AGG	0.465144	8_4:-52849031	None:intergenic
AAGCCATCTCCGGCAGGTGG+TGG	0.426599	8_4:-52840750	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCTTCTTCTTCTTATTCT+CGG	+	chr8_4:52840491-52840510	Msa1332870:five_prime_UTR	30.0%
TTCTTCTTCTTCTTATTCTC+GGG	+	chr8_4:52840492-52840511	Msa1332870:five_prime_UTR	30.0%
AGATAACTACACAATAGCAT+TGG	-	chr8_4:52840959-52840978	None:intergenic	30.0%
ATTTACAGCTTTCAGTAAAC+TGG	+	chr8_4:52841649-52841668	Msa1332870:intron	30.0%
TTTACAGCTTTCAGTAAACT+GGG	+	chr8_4:52841650-52841669	Msa1332870:intron	30.0%
TTCATTTCAGATCATTCTGA+TGG	+	chr8_4:52841865-52841884	Msa1332870:intron	30.0%
TGTCTTTCTATCTTTGATCA+GGG	-	chr8_4:52842134-52842153	None:intergenic	30.0%
AGAAGTCAGTAATTGTACAA+AGG	+	chr8_4:52842514-52842533	Msa1332870:intron	30.0%
AAAGGAAACAGACAAAATCT+TGG	+	chr8_4:52842532-52842551	Msa1332870:intron	30.0%
AAGGAAACAGACAAAATCTT+GGG	+	chr8_4:52842533-52842552	Msa1332870:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	52840394	52852158	52840394	ID=Msa1332870;Name=Msa1332870
chr8_4	mRNA	52840394	52852158	52840394	ID=Msa1332870-mRNA-1;Parent=Msa1332870;Name=Msa1332870-mRNA-1;_AED=0.14;_eAED=0.14;_QI=242\|0.94\|0.9\|1\|0.84\|0.8\|20\|417\|734
chr8_4	exon	52840394	52840873	52840394	ID=Msa1332870-mRNA-1:exon:15963;Parent=Msa1332870-mRNA-1
chr8_4	exon	52841875	52841945	52841875	ID=Msa1332870-mRNA-1:exon:15964;Parent=Msa1332870-mRNA-1
chr8_4	exon	52842088	52842166	52842088	ID=Msa1332870-mRNA-1:exon:15965;Parent=Msa1332870-mRNA-1
chr8_4	exon	52845213	52845295	52845213	ID=Msa1332870-mRNA-1:exon:15966;Parent=Msa1332870-mRNA-1
chr8_4	exon	52845390	52845441	52845390	ID=Msa1332870-mRNA-1:exon:15967;Parent=Msa1332870-mRNA-1
chr8_4	exon	52846125	52846192	52846125	ID=Msa1332870-mRNA-1:exon:15968;Parent=Msa1332870-mRNA-1
chr8_4	exon	52846429	52846495	52846429	ID=Msa1332870-mRNA-1:exon:15969;Parent=Msa1332870-mRNA-1
chr8_4	exon	52846759	52846838	52846759	ID=Msa1332870-mRNA-1:exon:15970;Parent=Msa1332870-mRNA-1
chr8_4	exon	52846916	52846980	52846916	ID=Msa1332870-mRNA-1:exon:15971;Parent=Msa1332870-mRNA-1
chr8_4	exon	52847284	52847340	52847284	ID=Msa1332870-mRNA-1:exon:15972;Parent=Msa1332870-mRNA-1
chr8_4	exon	52847476	52847641	52847476	ID=Msa1332870-mRNA-1:exon:15973;Parent=Msa1332870-mRNA-1
chr8_4	exon	52848805	52848882	52848805	ID=Msa1332870-mRNA-1:exon:15974;Parent=Msa1332870-mRNA-1
chr8_4	exon	52848968	52849192	52848968	ID=Msa1332870-mRNA-1:exon:15975;Parent=Msa1332870-mRNA-1
chr8_4	exon	52849202	52849522	52849202	ID=Msa1332870-mRNA-1:exon:15976;Parent=Msa1332870-mRNA-1
chr8_4	exon	52850008	52850211	52850008	ID=Msa1332870-mRNA-1:exon:15977;Parent=Msa1332870-mRNA-1
chr8_4	exon	52850302	52850493	52850302	ID=Msa1332870-mRNA-1:exon:15978;Parent=Msa1332870-mRNA-1
chr8_4	exon	52850571	52850609	52850571	ID=Msa1332870-mRNA-1:exon:15979;Parent=Msa1332870-mRNA-1
chr8_4	exon	52850769	52850834	52850769	ID=Msa1332870-mRNA-1:exon:15980;Parent=Msa1332870-mRNA-1
chr8_4	exon	52850914	52850959	52850914	ID=Msa1332870-mRNA-1:exon:15981;Parent=Msa1332870-mRNA-1
chr8_4	exon	52851734	52852158	52851734	ID=Msa1332870-mRNA-1:exon:15982;Parent=Msa1332870-mRNA-1
chr8_4	five_prime_UTR	52840394	52840635	52840394	ID=Msa1332870-mRNA-1:five_prime_utr;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52840636	52840873	52840636	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52841875	52841945	52841875	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52842088	52842166	52842088	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52845213	52845295	52845213	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52845390	52845441	52845390	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52846125	52846192	52846125	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52846429	52846495	52846429	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52846759	52846838	52846759	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52846916	52846980	52846916	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52847284	52847340	52847284	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52847476	52847641	52847476	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52848805	52848882	52848805	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52848968	52849192	52848968	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52849202	52849522	52849202	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52850008	52850211	52850008	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52850302	52850493	52850302	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52850571	52850609	52850571	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52850769	52850834	52850769	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52850914	52850959	52850914	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	CDS	52851734	52851741	52851734	ID=Msa1332870-mRNA-1:cds;Parent=Msa1332870-mRNA-1
chr8_4	three_prime_UTR	52851742	52852158	52851742	ID=Msa1332870-mRNA-1:three_prime_utr;Parent=Msa1332870-mRNA-1

Gene Sequence

>Msa1332870

ATGAACTACAACCACCGTCGAAGTCCGGGTGGTTTCCGCCCCGCTCCTCTCCACCGCAGCAACTTTGATAGTCCCCCGCGATGGTCTCCGGGTAGGGTTGGTAGTGGTTTTCGTCCACCACCTGCCGGAGATGGCTTCAGACCGGTGGGTGGTGATGAATTTGGATTCAACCTGCCACCACCGCCGTTGTCTGGTCAGAAACGCGGGTTTCCGTTCTCTGGTCGTGGTGCTTCACCGGATCATTCTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGGTCTGTTCCCCGAACAGCAACTGAGGAAGATATTCGTCCTTTGTTTGAGGAACACGGGAATGTGGTTGAGGTTGCCCTGATCAAAGATAGAAAGACAGGACAGCATCAAGGTTGTTGTTTTATAAAATATGCTACCTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCATAATCGACATACTCTTCCCGGAGGTGTTGGTCCCATCCAAGTGCGGTATGCTGATGGCGAACGGGAACGCCTTGGTGCAGTTGAGTACAAACTATTCGTGGGCTCTCTGAACAAACAGGCCAGTGTAAAGGAAGTCGAGGAAGTTTTCTCAAAATATGGACGGATTGAAGATGTTTATCTTATGCGTGATGACCAGAAGCAGAGTCGTGGATGCGGTTTTGTCAAATACTCTCATAGAGATATGGCACTGGCAGCTATTAATGCACTTAATGGAATATATACAATGAGAGGTTGTGAACAACCACTGATTGTCCGGTTCGCTGATCCTAAGAGACCTCGTCAAGGAGATTCCAGGGGTCCTGCATTTGGATCTGCAGGATTTGGTCCAAGATTGGATTCACCAGGCACTAGACTTCCATCAAATAATTCTGATCCTATGGGTGATCATATTCCTCCCCCTAATGCTTGGCGTCCAATCCCTCAACCAAATACTGGGACATCCTTCAATGCTGGTTTTCATGGCATGGGGCCTCCATCGATTCCAAGATCTGGGGACATGGCATTGCCTATAAATGCAGGTGGTCCTATGACTGGCATGGGAGTCTCCATAGATGATCGTTTTCAAACTCAGTCTCCGTCAGCAATGCCGCAACAGAATTTCAACCAGCCTCCACCACAAATTCCACCGGTCAATCAACAAATACCTCCATCACAGAAACCTATTCAATCATCTCAGGAGTTTCCACCTTCACACCAGTTATATCCTCAAGCTCCGATTCCCTATCCACAAACATCCACACGTCCATCTTTCAGGCAGCATGGTCAGCCACAACCTCTCCCTGCTGGCCCGCAGGGACTGGGCATAAATGCACAGTTTTCACCTCAAAGTCAGCAGGGTGTTTTGTCTGCTACGTTTCCTCAGACCTCTCTTGATACCAGCATGCAATCTAATACCGCATTGACTACTCCAAGTCAACAGCAAATTCCTCCTTCTATGCAGCAGCAGCAGCATCCACTTCAACCTCTTCCACAATCCCCTTCTCAGTTAGCTCAATTGTTGTCACAACAAACACAGACGTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAACCATCCAGTCAAGCATCGCCATTGCAGCATCATGCAGAAGCTACTAAAACACAGTCTCAATGGGGTGGGACTGTATCACATGCAGCGACCGGCACTCATATAGCTGCACCTGCTGCAGGTGTTCCTTCATCAACACCTGCTACTTCTTCTGTACAACCAATAAGCCAGAACACAACTCTTGGAAATTGTAATTGGACAGAGCATCTATCTCCCGAGGGCTTCAAATACTACTATAATAGTGTAACTGGGGAAAGTCGGTGGGAGAAACCCGAAGAGTTGACATCATCTGAACAGCAAAAACAACTGCTCAATCAGTCTGTTCAGCAGTCTCAAATTCAGGGACAGCCTTCAATACCACCCACCCAGCAAGTTGCACTAAACCAACAGGTTCAGCCTCAAAGTCATTTCCGAGGACAAGTTCACCATCAACAAATACAGCAGCCTTCGTCGTTCCAGGCATATGGAGTTACAGGTCATCAAAATGTTCAGGAACTTGGCTATAAACAGTCACAGACATCATTTGTTTCTGCCGGTGATCCTGGACGTTATTCACAGGGTATCAATAATACACAAGAGCTGATGTGGAAAAACAGGCCTACAGGAGTCTGA

Protein sequence

>Msa1332870

MNYNHRRSPGGFRPAPLHRSNFDSPPRWSPGRVGSGFRPPPAGDGFRPVGGDEFGFNLPPPPLSGQKRGFPFSGRGASPDHSDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNRHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDSRGPAFGSAGFGPRLDSPGTRLPSNNSDPMGDHIPPPNAWRPIPQPNTGTSFNAGFHGMGPPSIPRSGDMALPINAGGPMTGMGVSIDDRFQTQSPSAMPQQNFNQPPPQIPPVNQQIPPSQKPIQSSQEFPPSHQLYPQAPIPYPQTSTRPSFRQHGQPQPLPAGPQGLGINAQFSPQSQQGVLSATFPQTSLDTSMQSNTALTTPSQQQIPPSMQQQQHPLQPLPQSPSQLAQLLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQASPLQHHAEATKTQSQWGGTVSHAATGTHIAAPAAGVPSSTPATSSVQPISQNTTLGNCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTSSEQQKQLLNQSVQQSQIQGQPSIPPTQQVALNQQVQPQSHFRGQVHHQQIQQPSSFQAYGVTGHQNVQELGYKQSQTSFVSAGDPGRYSQGINNTQELMWKNRPTGV*