AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0506580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506580 MtrunA17_Chr3g0108331 97.887 568 12 0 1 568 1 568 0.0 1151
Msa0506580 MtrunA17_Chr5g0432861 71.897 580 143 7 4 568 5 579 0.0 829
Msa0506580 MtrunA17_Chr5g0401451 40.391 614 304 10 8 566 24 630 3.77e-145 432
Msa0506580 MtrunA17_Chr4g0053841 39.826 575 292 8 12 539 1 568 1.83e-136 409
Msa0506580 MtrunA17_Chr4g0010091 39.062 576 298 10 8 539 16 582 5.68e-135 406
Msa0506580 MtrunA17_Chr1g0195911 36.495 622 315 16 7 568 20 621 5.98e-124 378
Msa0506580 MtrunA17_Chr7g0245201 36.410 585 329 10 23 568 60 640 4.46e-117 360
Msa0506580 MtrunA17_Chr7g0268781 35.195 591 308 12 7 539 20 593 4.25e-116 358
Msa0506580 MtrunA17_Chr2g0303541 36.689 586 309 13 11 537 12 594 5.36e-113 350
Msa0506580 MtrunA17_Chr2g0285511 35.231 562 280 10 11 500 12 561 9.12e-107 333
Msa0506580 MtrunA17_Chr8g0374011 34.365 646 321 15 16 563 11 651 4.31e-104 327
Msa0506580 MtrunA17_Chr1g0181181 37.155 471 263 7 18 463 20 482 1.54e-103 323
Msa0506580 MtrunA17_Chr2g0279481 32.524 618 326 7 12 541 32 646 1.01e-102 325
Msa0506580 MtrunA17_Chr4g0050021 32.353 612 327 11 13 541 33 640 2.05e-99 315
Msa0506580 MtrunA17_Chr2g0320691 33.688 564 316 11 3 510 2 563 4.82e-97 308
Msa0506580 MtrunA17_Chr8g0382231 33.333 519 301 9 24 508 52 559 4.46e-93 298
Msa0506580 MtrunA17_Chr4g0076521 32.391 460 288 5 19 460 21 475 2.08e-84 274
Msa0506580 MtrunA17_Chr5g0401341 35.095 473 257 9 23 460 26 483 4.03e-84 274
Msa0506580 MtrunA17_Chr1g0150191 33.811 488 272 8 11 459 12 487 6.42e-83 271
Msa0506580 MtrunA17_Chr1g0199631 33.406 461 263 8 42 464 8 462 2.01e-82 268
Msa0506580 MtrunA17_Chr5g0412591 34.706 510 240 11 19 469 21 496 2.43e-82 269
Msa0506580 MtrunA17_Chr1g0207461 33.264 484 269 9 21 465 25 493 9.40e-82 268
Msa0506580 MtrunA17_Chr1g0191711 30.038 526 321 10 1 510 34 528 1.54e-77 254
Msa0506580 MtrunA17_Chr8g0367891 33.266 496 271 9 27 482 29 504 5.09e-74 247
Msa0506580 MtrunA17_Chr2g0290741 30.197 457 284 6 23 460 25 465 9.12e-70 235
Msa0506580 MtrunA17_Chr4g0003891 32.792 308 187 4 161 461 20 314 6.56e-50 178
Msa0506580 MtrunA17_Chr2g0332281 34.266 286 176 3 183 466 24 299 5.97e-48 172
Msa0506580 MtrunA17_Chr4g0037661 25.338 517 275 12 66 507 49 529 3.26e-40 154
Msa0506580 MtrunA17_Chr1g0206621 44.737 152 78 3 28 177 72 219 7.77e-38 139
Msa0506580 MtrunA17_Chr4g0023801 25.191 524 313 13 33 508 14 506 2.82e-37 145
Msa0506580 MtrunA17_Chr1g0163311 26.071 537 297 16 34 509 14 511 2.01e-35 139
Msa0506580 MtrunA17_Chr2g0280541 26.289 388 223 11 91 446 2 358 5.43e-25 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506580 AT2G30520.1 66.610 584 176 6 4 568 10 593 0.0 786
Msa0506580 AT2G30520.2 66.422 545 164 6 43 568 1 545 0.0 724
Msa0506580 AT2G30520.3 66.422 545 164 6 43 568 1 545 0.0 724
Msa0506580 AT5G67385.1 38.336 613 321 12 2 568 3 604 9.16e-131 395
Msa0506580 AT5G48800.1 38.870 584 280 11 7 539 22 579 7.94e-130 393
Msa0506580 AT1G03010.1 35.690 594 308 13 7 539 20 600 1.12e-119 367
Msa0506580 AT1G03010.2 35.986 578 297 12 23 539 8 573 2.05e-118 363
Msa0506580 AT1G03010.3 35.986 578 297 12 23 539 34 599 6.83e-118 363
Msa0506580 AT2G47860.1 36.918 558 280 12 7 509 21 561 7.30e-114 352
Msa0506580 AT1G30440.1 34.992 623 325 13 11 555 12 632 5.50e-113 351
Msa0506580 AT5G67385.4 36.842 570 303 12 45 568 1 559 1.08e-112 347
Msa0506580 AT5G67385.5 36.842 570 303 12 45 568 1 559 1.08e-112 347
Msa0506580 AT5G67385.2 36.842 570 303 12 45 568 1 559 1.08e-112 347
Msa0506580 AT5G67385.3 36.842 570 303 12 45 568 1 559 1.08e-112 347
Msa0506580 AT2G47860.3 35.456 581 280 13 7 509 21 584 9.25e-109 340
Msa0506580 AT3G08570.1 34.615 572 319 10 19 547 30 589 4.05e-108 337
Msa0506580 AT3G08660.1 34.783 552 314 13 19 545 30 560 1.84e-103 324
Msa0506580 AT5G03250.1 36.853 502 264 10 9 463 10 505 1.27e-102 322
Msa0506580 AT5G13600.1 35.874 538 299 12 18 511 20 555 2.07e-100 316
Msa0506580 AT3G08660.3 33.846 520 299 12 51 545 1 500 3.41e-95 300
Msa0506580 AT3G49970.1 35.009 557 289 16 37 568 7 515 3.44e-92 292
Msa0506580 AT3G49970.2 35.009 557 289 16 37 568 7 515 3.44e-92 292
Msa0506580 AT2G47860.4 37.671 438 225 10 7 410 21 444 1.22e-88 281
Msa0506580 AT3G50840.1 34.923 587 331 13 10 565 1 567 5.73e-88 283
Msa0506580 AT5G66560.1 32.110 654 314 14 16 547 10 655 3.60e-87 284
Msa0506580 AT2G47860.6 35.792 461 225 11 7 410 21 467 1.40e-83 268
Msa0506580 AT5G10250.2 31.148 549 323 11 18 527 44 576 4.87e-83 271
Msa0506580 AT5G66560.3 33.989 559 284 11 66 547 76 626 5.82e-83 272
Msa0506580 AT5G66560.4 33.989 559 284 11 66 547 66 616 5.90e-83 271
Msa0506580 AT2G14820.2 34.091 484 262 9 23 465 26 493 1.05e-82 271
Msa0506580 AT2G14820.1 34.091 484 262 9 23 465 26 493 1.05e-82 271
Msa0506580 AT5G10250.1 31.911 539 317 12 18 527 44 561 4.37e-82 269
Msa0506580 AT3G44820.1 30.824 558 320 11 18 510 17 573 1.28e-81 268
Msa0506580 AT3G50840.2 34.846 551 309 12 45 565 1 531 1.10e-79 260
Msa0506580 AT3G50840.3 34.846 551 309 12 45 565 1 531 1.10e-79 260
Msa0506580 AT2G47860.5 34.716 458 227 11 109 509 1 443 1.89e-78 256
Msa0506580 AT2G47860.2 34.716 458 227 11 109 509 1 443 1.89e-78 256
Msa0506580 AT1G67900.5 34.669 499 273 5 21 469 23 518 4.07e-77 256
Msa0506580 AT1G67900.1 34.669 499 273 5 21 469 23 518 4.07e-77 256
Msa0506580 AT1G67900.3 34.669 499 273 5 21 469 23 518 4.07e-77 256
Msa0506580 AT1G67900.6 34.669 499 273 5 21 469 23 518 4.07e-77 256
Msa0506580 AT1G67900.2 34.669 499 273 5 21 469 23 518 4.07e-77 256
Msa0506580 AT1G67900.4 34.669 499 273 5 21 469 23 518 4.07e-77 256
Msa0506580 AT4G31820.1 32.272 471 258 8 23 460 26 468 1.66e-75 250
Msa0506580 AT3G08660.2 35.208 409 228 10 19 411 30 417 4.71e-75 245
Msa0506580 AT5G67440.3 33.833 467 268 9 21 460 24 476 6.38e-75 249
Msa0506580 AT5G67440.1 33.833 467 268 9 21 460 24 476 6.38e-75 249
Msa0506580 AT5G47800.3 30.435 460 294 7 19 458 21 474 2.05e-71 239
Msa0506580 AT5G47800.1 30.435 460 294 7 19 458 21 474 2.05e-71 239
Msa0506580 AT5G47800.4 30.435 460 294 7 19 458 21 474 2.05e-71 239
Msa0506580 AT5G03250.2 34.336 399 212 8 109 463 1 393 1.44e-70 235
Msa0506580 AT4G37590.1 31.780 472 260 9 21 460 24 465 2.23e-70 237
Msa0506580 AT2G23050.1 31.501 473 260 8 21 468 24 457 3.48e-70 234
Msa0506580 AT5G47800.2 30.702 456 290 7 23 458 138 587 5.47e-70 238
Msa0506580 AT5G67440.2 32.962 449 260 9 39 460 5 439 6.38e-68 229
Msa0506580 AT5G66560.2 32.985 479 229 10 16 410 10 480 9.01e-66 222
Msa0506580 AT4G31820.2 31.151 443 244 8 51 460 1 415 1.71e-65 222
Msa0506580 AT3G26490.1 29.623 530 282 12 21 487 23 524 3.97e-62 215
Msa0506580 AT3G26490.3 29.623 530 282 12 21 487 23 524 3.97e-62 215
Msa0506580 AT3G26490.4 29.623 530 282 12 21 487 23 524 3.97e-62 215
Msa0506580 AT1G52770.1 35.315 286 169 4 183 461 28 304 8.29e-50 179
Msa0506580 AT5G48130.1 28.337 487 269 14 18 467 33 476 1.21e-49 182
Msa0506580 AT3G15570.1 35.959 292 159 4 185 461 31 309 2.16e-49 177
Msa0506580 AT3G26490.2 29.462 465 245 12 21 420 23 469 2.46e-47 173
Msa0506580 AT5G64330.2 35.798 257 124 3 14 229 42 298 4.03e-47 175
Msa0506580 AT5G64330.2 34.363 259 139 2 225 461 357 606 1.21e-39 154
Msa0506580 AT5G64330.1 35.798 257 124 3 14 229 42 298 5.97e-47 176
Msa0506580 AT5G64330.1 29.178 377 210 5 225 553 357 724 1.44e-40 157
Msa0506580 AT3G19850.1 26.115 471 277 7 37 459 17 464 9.28e-44 164
Msa0506580 AT2G23050.2 28.947 380 211 7 109 468 1 341 9.50e-43 157
Msa0506580 AT5G64330.3 34.363 259 139 2 225 461 298 547 8.11e-40 154
Msa0506580 AT5G64330.3 35.470 234 110 3 37 229 6 239 2.51e-38 149
Msa0506580 AT1G50280.1 27.426 474 266 12 33 454 13 460 1.44e-38 149
Msa0506580 AT1G50280.2 27.982 436 241 11 66 454 18 427 2.79e-37 145
Msa0506580 AT3G03510.1 24.894 470 305 10 74 537 4 431 4.73e-34 135
Msa0506580 AT5G17580.2 25.217 460 299 9 26 462 22 459 1.84e-31 129
Msa0506580 AT5G17580.1 25.217 460 299 9 26 462 7 444 3.08e-31 128
Msa0506580 AT3G22104.1 25.386 453 267 14 26 445 6 420 1.28e-27 117
Msa0506580 AT3G22104.4 24.737 380 218 11 96 445 4 345 1.95e-19 91.7
Msa0506580 AT3G22104.2 24.737 380 218 11 96 445 4 345 1.95e-19 91.7
Msa0506580 AT3G22104.3 24.737 380 218 11 96 445 4 345 1.95e-19 91.7
Msa0506580 AT3G49900.2 34.132 167 87 8 9 163 49 204 2.93e-13 72.8
Msa0506580 AT3G49900.1 34.132 167 87 8 9 163 49 204 3.18e-13 72.8

Find 154 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACATGCCCATCTTCTAAA+TGG 0.193863 3_4:+53051192 None:intergenic
ATTCCTTAACTATTTGTTCT+AGG 0.213849 3_4:+53050862 None:intergenic
GTTAATATATAAGGACATTT+TGG 0.214594 3_4:+53053389 None:intergenic
AAACCAACCATAGAAGTTTA+TGG 0.290183 3_4:-53053269 Msa0506580:exon
TAAACTTCTATGGTTGGTTT+TGG 0.291163 3_4:+53053272 None:intergenic
CTACATCAGAAAACTAATAA+TGG 0.343477 3_4:-53052783 Msa0506580:CDS
GAACTCAACGACGTCGTTCC+CGG 0.352390 3_4:+53051293 None:intergenic
GATCGGGAAAGCAGCTTTCT+CGG 0.354282 3_4:+53052142 None:intergenic
AACATTGAACTTTGTGTTTG+TGG 0.357568 3_4:+53053469 None:intergenic
TTCCTTAACTATTTGTTCTA+GGG 0.358668 3_4:+53050863 None:intergenic
CACAGCGTTTCACGATGTTT+AGG 0.359451 3_4:+53052471 None:intergenic
ATGGCAAGGGAGAGTCTATT+AGG 0.364243 3_4:+53053238 None:intergenic
GATTGATAATTGATTCTAGA+AGG 0.367450 3_4:+53052174 None:intergenic
GCTGCTTTCTCAAAGATTCC+AGG 0.370649 3_4:+53052707 None:intergenic
TGATGACCCGATTCCATTAC+CGG 0.374237 3_4:+53052235 None:intergenic
TTAGCCGCCATAAACTTCTA+TGG 0.375218 3_4:+53053262 None:intergenic
GGTGGGTGGGTTAATATATA+AGG 0.390757 3_4:+53053380 None:intergenic
CTTTCGATTTCATCTAGCTT+CGG 0.397040 3_4:+53051602 None:intergenic
ATTCGCCTCGCTGCAAGCCT+TGG 0.399473 3_4:+53052433 None:intergenic
TATGTCAGAGAGATCTATTC+TGG 0.403839 3_4:+53052739 None:intergenic
GCCGCTCACCCGCGAATTGG+TGG 0.408943 3_4:-53052403 Msa0506580:CDS
TGAAATTCGTTTCTCGAGTT+CGG 0.410991 3_4:+53052058 None:intergenic
CATACTAGTTGCTTTATGCT+TGG 0.412713 3_4:-53051109 Msa0506580:three_prime_UTR
ATCGTAAAACTGCGACATTA+TGG 0.413061 3_4:+53052648 None:intergenic
CTAGCCGCTCACCCGCGAAT+TGG 0.415900 3_4:-53052406 Msa0506580:CDS
AACCACTCCGGTAATGGAAT+CGG 0.419824 3_4:-53052242 Msa0506580:CDS
GTCGCAGAACAAACGGTTAC+CGG 0.424740 3_4:-53051519 Msa0506580:CDS
GTTCGGAACCACTCCGGTAA+TGG 0.431319 3_4:-53052248 Msa0506580:CDS
AGAGAAAGTATGCAGCATAA+TGG 0.445256 3_4:-53051579 Msa0506580:CDS
GACCGATGAATTCCTCTCTA+AGG 0.452466 3_4:-53052567 Msa0506580:CDS
ACCCCTAGAACAAATAGTTA+AGG 0.459497 3_4:-53050865 Msa0506580:three_prime_UTR
TCTGACATACCAGGAGGTCC+TGG 0.459917 3_4:-53052725 Msa0506580:CDS
CTCAGCATCTCAAAGTTCAA+TGG 0.460045 3_4:-53051801 Msa0506580:CDS
GATCACTCCAGGAGCTAGTT+CGG 0.461246 3_4:-53052265 Msa0506580:CDS
AATTCGCGGGTGAGCGGCTA+GGG 0.462163 3_4:+53052408 None:intergenic
AGTGGTTCCGAACTAGCTCC+TGG 0.465595 3_4:+53052258 None:intergenic
AGCGCGGCTGCAATGGTTGG+AGG 0.466445 3_4:+53052305 None:intergenic
TCAAAGATTCCAGGACCTCC+TGG 0.468786 3_4:+53052716 None:intergenic
ACTGATGTTATAGTTGAAGT+TGG 0.477365 3_4:-53053072 Msa0506580:CDS
CACATGCCCATCTTCTAAAT+GGG 0.478770 3_4:+53051193 None:intergenic
AGACCGTGGAGGCGCGGAGG+TGG 0.480039 3_4:+53052087 None:intergenic
GATGTTTAGGTCATCGGCAT+AGG 0.480481 3_4:+53052484 None:intergenic
TCCCTTGCCATGGAGAGAAC+TGG 0.480790 3_4:-53053226 Msa0506580:CDS
AATAGAGAACCTTCTTCTCC+TGG 0.481171 3_4:+53051157 None:intergenic
GACAATGAATTGCATGGTGG+TGG 0.482861 3_4:+53053362 None:intergenic
CTCGCTGAAATCGCCGCGTA+CGG 0.483578 3_4:-53051828 Msa0506580:CDS
CCGCCATAAACTTCTATGGT+TGG 0.491975 3_4:+53053266 None:intergenic
GGCAGCAAAGGAAGTTGATC+GGG 0.493738 3_4:+53052126 None:intergenic
GATACGGCCCATTTAGAAGA+TGG 0.496730 3_4:-53051200 Msa0506580:CDS
TGACTAAGCCCAGGAGAAGA+AGG 0.496892 3_4:-53051166 Msa0506580:CDS
GAGCTGCGACGGAGAGGAAT+CGG 0.498778 3_4:-53051421 Msa0506580:CDS
TTCCTCAGTCCACCAATTCG+CGG 0.498945 3_4:+53052394 None:intergenic
GAAGATGAAGATGTACATTA+CGG 0.501299 3_4:-53051342 Msa0506580:CDS
ACCACTCCGGTAATGGAATC+GGG 0.504193 3_4:-53052241 Msa0506580:CDS
TGTTGAAGCTGCAAGCGCCA+AGG 0.505313 3_4:-53052450 Msa0506580:CDS
GGAAAGCAGCTTTCTCGGAC+GGG 0.507470 3_4:+53052147 None:intergenic
ATCAGCGCGGCTGCAATGGT+TGG 0.510359 3_4:+53052302 None:intergenic
AATGATTCTTTGAGTTCTCC+CGG 0.510540 3_4:+53051894 None:intergenic
AGCACGCTTCTGCCTCCATA+AGG 0.513053 3_4:-53053046 Msa0506580:intron
CGCAACGGAGGAGGCAGCAA+AGG 0.514322 3_4:+53052114 None:intergenic
AATCCACCTCCGCGCCTCCA+CGG 0.514528 3_4:-53052090 Msa0506580:CDS
AGAGCCGGTGAGAGTGAAGA+AGG 0.516104 3_4:+53052541 None:intergenic
GGTGGATTGCGCAACGGAGG+AGG 0.517135 3_4:+53052105 None:intergenic
CAATTCGCGGGTGAGCGGCT+AGG 0.520783 3_4:+53052407 None:intergenic
AAATTTATGACTGAGTTAGC+TGG 0.521430 3_4:+53053340 None:intergenic
TACACGCGTCGCAGAACAAA+CGG 0.527298 3_4:-53051526 Msa0506580:CDS
ACTTCAACTATAACATCAGT+TGG 0.529282 3_4:+53053075 None:intergenic
GCTTCGTAGGATAGCTTCAA+TGG 0.531460 3_4:+53051554 None:intergenic
TCCTCAGTCCACCAATTCGC+GGG 0.533006 3_4:+53052395 None:intergenic
GTGACAACAACCTCGCTGGC+CGG 0.533030 3_4:-53052589 Msa0506580:CDS
TCCTTAACTATTTGTTCTAG+GGG 0.535614 3_4:+53050864 None:intergenic
GGTCATCGGCATAGGGAAGA+AGG 0.536469 3_4:+53052492 None:intergenic
CGAATGCGACGGAGCTGCGA+CGG 0.538788 3_4:-53051432 Msa0506580:CDS
AAAGCAGCTAAATTCTGTTA+CGG 0.541352 3_4:-53052692 Msa0506580:CDS
TTTCACGATGTTTAGGTCAT+CGG 0.541398 3_4:+53052478 None:intergenic
TAGAGAGGAATTCATCGGTC+CGG 0.542864 3_4:+53052570 None:intergenic
TGTAATCAGCGCGGCTGCAA+TGG 0.543689 3_4:+53052298 None:intergenic
GACGGATGTGTCGTTGGTGA+GGG 0.544324 3_4:-53051393 Msa0506580:CDS
CGACGGATGTGTCGTTGGTG+AGG 0.545411 3_4:-53051394 Msa0506580:CDS
AAGTTATGCAATGTTTGTTG+TGG 0.545441 3_4:-53050976 Msa0506580:three_prime_UTR
CTTGAGAACGGCCACAGAGC+CGG 0.545492 3_4:+53052526 None:intergenic
GGCCAGTTCTCTCCATGGCA+AGG 0.548490 3_4:+53053224 None:intergenic
TACGGTGACAACAACCTCGC+TGG 0.549160 3_4:-53052593 Msa0506580:CDS
ATACTCAGAGCGATCACTCC+AGG 0.554139 3_4:-53052276 Msa0506580:CDS
ATAGAGAACCTTCTTCTCCT+GGG 0.555992 3_4:+53051158 None:intergenic
ATGAATTGCATGGTGGTGGG+TGG 0.555992 3_4:+53053366 None:intergenic
GAAGAGTTTCTCGCCGTCGT+AGG 0.556907 3_4:+53051986 None:intergenic
TCCACCAATTCGCGGGTGAG+CGG 0.558969 3_4:+53052402 None:intergenic
ATGTTTAGGTCATCGGCATA+GGG 0.559679 3_4:+53052485 None:intergenic
ATGATTGCAGTTCATGTTGG+TGG 0.563694 3_4:-53052816 Msa0506580:intron
AGGCAGCAAAGGAAGTTGAT+CGG 0.565487 3_4:+53052125 None:intergenic
CGCCGTTGATATCTATCTCA+AGG 0.566265 3_4:-53051724 Msa0506580:intron
ATGGTTCATGACAATGTTTG+TGG 0.571060 3_4:-53050999 Msa0506580:three_prime_UTR
ATACGGCCCATTTAGAAGAT+GGG 0.571365 3_4:-53051199 Msa0506580:CDS
ATAGATCTCTCTGACATACC+AGG 0.571727 3_4:-53052734 Msa0506580:CDS
CGCGGAGGTGGATTGCGCAA+CGG 0.577702 3_4:+53052099 None:intergenic
CCATTGGCCAGTTCTCTCCA+TGG 0.580279 3_4:+53053219 None:intergenic
GCCAGTTCTCTCCATGGCAA+GGG 0.582388 3_4:+53053225 None:intergenic
ATTAAACATTACAAAATCAA+AGG 0.582389 3_4:+53050935 None:intergenic
CGCGTGTACACGCGCTTCGT+AGG 0.584147 3_4:+53051541 None:intergenic
CGGCATAGGGAAGAAGGTGG+TGG 0.587751 3_4:+53052498 None:intergenic
CAGCAGAAGAACGTTACGCC+GGG 0.588960 3_4:-53051311 Msa0506580:CDS
TAATAGACTCTCCCTTGCCA+TGG 0.589764 3_4:-53053236 Msa0506580:CDS
GGGAAAGCAGCTTTCTCGGA+CGG 0.592474 3_4:+53052146 None:intergenic
GTCGTTGGTGAGGGAGAATG+AGG 0.593999 3_4:-53051384 Msa0506580:CDS
TGAAGAAGGCGACCTTAGAG+AGG 0.594310 3_4:+53052555 None:intergenic
TCAGACGATGGCGAATGCGA+CGG 0.598178 3_4:-53051443 Msa0506580:CDS
ATGTGGATTTGACTAAGCCC+AGG 0.598550 3_4:-53051175 Msa0506580:CDS
TGAATTGCATGGTGGTGGGT+GGG 0.603256 3_4:+53053367 None:intergenic
CTCGAAATGACTGATGAGTA+CGG 0.607208 3_4:-53052611 Msa0506580:CDS
ACTACGATCAGTTGAAGTTG+AGG 0.608135 3_4:-53051472 Msa0506580:CDS
GTTAGCGACGGATGTGTCGT+TGG 0.608435 3_4:-53051399 Msa0506580:CDS
GTCGCCTTCTTCACTCTCAC+CGG 0.608496 3_4:-53052545 Msa0506580:CDS
CGCCACACGTAGCATAGCGA+CGG 0.609350 3_4:+53051869 None:intergenic
AATATGATTGCAGTTCATGT+TGG 0.613034 3_4:-53052819 Msa0506580:intron
CTCCGTCGCTATGCTACGTG+TGG 0.615178 3_4:-53051871 Msa0506580:CDS
GATGCTGAGTTCGCCGTACG+CGG 0.615969 3_4:+53051815 None:intergenic
GCGACGGAGCTGCGACGGAG+AGG 0.618112 3_4:-53051427 Msa0506580:CDS
TACCTTGAGATAGATATCAA+CGG 0.618572 3_4:+53051722 None:intergenic
GCAGCAGAAGAACGTTACGC+CGG 0.618657 3_4:-53051312 Msa0506580:CDS
GGAGAATGAGGAGTTACGAT+CGG 0.618799 3_4:-53051372 Msa0506580:CDS
CATCACGAGGAGGTCGTCGA+CGG 0.619642 3_4:+53052016 None:intergenic
TTCAGCGAGGTACATGTCGA+CGG 0.620480 3_4:+53051842 None:intergenic
GCGTGTAAAACTATCTGCAC+CGG 0.627565 3_4:+53051500 None:intergenic
GAGCTAGTTCGGAACCACTC+CGG 0.628807 3_4:-53052254 Msa0506580:CDS
CTTCACTCTCACCGGCTCTG+TGG 0.629213 3_4:-53052537 Msa0506580:CDS
ACTAGTATGCAAACTTTGAG+AGG 0.629399 3_4:+53051123 None:intergenic
CCATGGAGAGAACTGGCCAA+TGG 0.634800 3_4:-53053219 Msa0506580:intron
ACAATGAATTGCATGGTGGT+GGG 0.636959 3_4:+53053363 None:intergenic
GACCTTAGAGAGGAATTCAT+CGG 0.638612 3_4:+53052565 None:intergenic
ACCCGATTCCATTACCGGAG+TGG 0.640935 3_4:+53052240 None:intergenic
TACAGACCGTGGAGGCGCGG+AGG 0.641063 3_4:+53052084 None:intergenic
GGAGGTGGATTGCGCAACGG+AGG 0.652208 3_4:+53052102 None:intergenic
GGAGAGGAATCGGTTAGCGA+CGG 0.657325 3_4:-53051411 Msa0506580:CDS
ATTCATCGGTCCGGCCAGCG+AGG 0.662272 3_4:+53052579 None:intergenic
GATCAGTTGAAGTTGAGGAG+TGG 0.665109 3_4:-53051467 Msa0506580:CDS
CGTAGGAGAATGACATCACG+AGG 0.666273 3_4:+53052003 None:intergenic
TTGAGGAGTGGATCAGACGA+TGG 0.668579 3_4:-53051455 Msa0506580:CDS
CCATTTAGAAGATGGGCATG+TGG 0.677458 3_4:-53051192 Msa0506580:CDS
GTGATGTCATTCTCCTACGA+CGG 0.684941 3_4:-53051999 Msa0506580:CDS
GTGGTGGCAAGACTTGAGAA+CGG 0.687847 3_4:+53052514 None:intergenic
CGTCGACGGTTACATGCTCG+AGG 0.688561 3_4:+53052030 None:intergenic
AAGCGCCAAGGCTTGCAGCG+AGG 0.692127 3_4:-53052438 Msa0506580:CDS
ACCCGCGAATTGGTGGACTG+AGG 0.708374 3_4:-53052396 Msa0506580:CDS
CATCGGCATAGGGAAGAAGG+TGG 0.713733 3_4:+53052495 None:intergenic
ATCGCATGTATGAAACAGCG+CGG 0.732891 3_4:-53052335 Msa0506580:CDS
TAGCTGGACAATGAATTGCA+TGG 0.734784 3_4:+53053356 None:intergenic
CGTACGCGGCGATTTCAGCG+AGG 0.741962 3_4:+53051829 None:intergenic
CTCTGAGTATGTAATCAGCG+CGG 0.746517 3_4:+53052289 None:intergenic
AGGAGAATGACATCACGAGG+AGG 0.750611 3_4:+53052006 None:intergenic
CCAACCATAGAAGTTTATGG+CGG 0.751330 3_4:-53053266 Msa0506580:exon
GATCTCTCTGACATACCAGG+AGG 0.759330 3_4:-53052731 Msa0506580:CDS
TGAGATAGATATCAACGGCG+CGG 0.763641 3_4:+53051727 None:intergenic
CTGGACAATGAATTGCATGG+TGG 0.791704 3_4:+53053359 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAACATTACAAAATCAA+AGG + chr3_4:53053397-53053416 None:intergenic 15.0%
!!! GTTAATATATAAGGACATTT+TGG + chr3_4:53050943-53050962 None:intergenic 20.0%
!! TCAAAGTACAAAATAGAAAA+TGG + chr3_4:53051203-53051222 None:intergenic 20.0%
!! ATGAACAATATAATTCACAT+GGG + chr3_4:53051323-53051342 None:intergenic 20.0%
!! TATGAACAATATAATTCACA+TGG + chr3_4:53051324-53051343 None:intergenic 20.0%
!! AAATAAACAAACTCGTTTAA+CGG + chr3_4:53052694-53052713 None:intergenic 20.0%
!!! TGCAGATTTTATATAGATTA+TGG - chr3_4:53053311-53053330 Msa0506580:five_prime_UTR 20.0%
!!! TATATTTTTATACGTATCAG+TGG - chr3_4:53053436-53053455 Msa0506580:five_prime_UTR 20.0%
!!! ATATTTTTATACGTATCAGT+GGG - chr3_4:53053437-53053456 Msa0506580:five_prime_UTR 20.0%
! TGTACTTTGATTATTATTCC+AGG - chr3_4:53051213-53051232 Msa0506580:CDS 25.0%
! GTACTTTGATTATTATTCCA+GGG - chr3_4:53051214-53051233 Msa0506580:CDS 25.0%
! GTAATCACATTTATTGATGT+TGG + chr3_4:53051413-53051432 None:intergenic 25.0%
! ATAAATGTGATTACATGTGT+CGG - chr3_4:53051419-53051438 Msa0506580:CDS 25.0%
! CTACATCAGAAAACTAATAA+TGG - chr3_4:53051546-53051565 Msa0506580:CDS 25.0%
!! GATTGATAATTGATTCTAGA+AGG + chr3_4:53052158-53052177 None:intergenic 25.0%
!!! CGAGTTTGTTTATTTTTTTC+AGG - chr3_4:53052699-53052718 Msa0506580:CDS 25.0%
! TTCCTTAACTATTTGTTCTA+GGG + chr3_4:53053469-53053488 None:intergenic 25.0%
! ATTCCTTAACTATTTGTTCT+AGG + chr3_4:53053470-53053489 None:intergenic 25.0%
AACATTGAACTTTGTGTTTG+TGG + chr3_4:53050863-53050882 None:intergenic 30.0%
AAATTTATGACTGAGTTAGC+TGG + chr3_4:53050992-53051011 None:intergenic 30.0%
!!! TAAACTTCTATGGTTGGTTT+TGG + chr3_4:53051060-53051079 None:intergenic 30.0%
AAACCAACCATAGAAGTTTA+TGG - chr3_4:53051060-53051079 Msa0506580:three_prime_UTR 30.0%
ACTTCAACTATAACATCAGT+TGG + chr3_4:53051257-53051276 None:intergenic 30.0%
ACTGATGTTATAGTTGAAGT+TGG - chr3_4:53051257-53051276 Msa0506580:CDS 30.0%
AATATGATTGCAGTTCATGT+TGG - chr3_4:53051510-53051529 Msa0506580:CDS 30.0%
AAAGCAGCTAAATTCTGTTA+CGG - chr3_4:53051637-53051656 Msa0506580:intron 30.0%
TACCTTGAGATAGATATCAA+CGG + chr3_4:53052610-53052629 None:intergenic 30.0%
GAAGATGAAGATGTACATTA+CGG - chr3_4:53052987-53053006 Msa0506580:intron 30.0%
TGGGAAAGTTGTTCAAAAAT+GGG - chr3_4:53053100-53053119 Msa0506580:intron 30.0%
!!! CTTTATGCTTGGTTTTGTTT+GGG - chr3_4:53053231-53053250 Msa0506580:CDS 30.0%
! AAGTTATGCAATGTTTGTTG+TGG - chr3_4:53053353-53053372 Msa0506580:five_prime_UTR 30.0%
TCCTTAACTATTTGTTCTAG+GGG + chr3_4:53053468-53053487 None:intergenic 30.0%
!!! ATGGTTGGTTTTGGTATATG+TGG + chr3_4:53051051-53051070 None:intergenic 35.0%
TTTAGTGTGTTGTGTACCAT+TGG + chr3_4:53051129-53051148 None:intergenic 35.0%
! TGCATGGATGGATTTGAAAA+TGG + chr3_4:53051164-53051183 None:intergenic 35.0%
TTAAGCATGTGTATGATGCA+TGG + chr3_4:53051180-53051199 None:intergenic 35.0%
!! ATGTTTTGGATACCTTATGG+AGG + chr3_4:53051298-53051317 None:intergenic 35.0%
!! GTCATGTTTTGGATACCTTA+TGG + chr3_4:53051301-53051320 None:intergenic 35.0%
! AATTCACATGGGTCATGTTT+TGG + chr3_4:53051312-53051331 None:intergenic 35.0%
TATGTCAGAGAGATCTATTC+TGG + chr3_4:53051593-53051612 None:intergenic 35.0%
ATCGTAAAACTGCGACATTA+TGG + chr3_4:53051684-53051703 None:intergenic 35.0%
TTTCACGATGTTTAGGTCAT+CGG + chr3_4:53051854-53051873 None:intergenic 35.0%
TGAAATTCGTTTCTCGAGTT+CGG + chr3_4:53052274-53052293 None:intergenic 35.0%
TGAAAAAGAGAAAAACGCAG+CGG - chr3_4:53052404-53052423 Msa0506580:CDS 35.0%
! AATGATTCTTTGAGTTCTCC+CGG + chr3_4:53052438-53052457 None:intergenic 35.0%
! CTTTCGATTTCATCTAGCTT+CGG + chr3_4:53052730-53052749 None:intergenic 35.0%
! AGAGAAAGTATGCAGCATAA+TGG - chr3_4:53052750-53052769 Msa0506580:CDS 35.0%
CTGGGAAAGTTGTTCAAAAA+TGG - chr3_4:53053099-53053118 Msa0506580:intron 35.0%
GGGAAAGTTGTTCAAAAATG+GGG - chr3_4:53053101-53053120 Msa0506580:intron 35.0%
ACTAGTATGCAAACTTTGAG+AGG + chr3_4:53053209-53053228 None:intergenic 35.0%
! CATACTAGTTGCTTTATGCT+TGG - chr3_4:53053220-53053239 Msa0506580:CDS 35.0%
!!! GCTTTATGCTTGGTTTTGTT+TGG - chr3_4:53053230-53053249 Msa0506580:CDS 35.0%
ATGGTTCATGACAATGTTTG+TGG - chr3_4:53053330-53053349 Msa0506580:five_prime_UTR 35.0%
ACCCCTAGAACAAATAGTTA+AGG - chr3_4:53053464-53053483 Msa0506580:five_prime_UTR 35.0%
!! GGTGGGTGGGTTAATATATA+AGG + chr3_4:53050952-53050971 None:intergenic 40.0%
ACAATGAATTGCATGGTGGT+GGG + chr3_4:53050969-53050988 None:intergenic 40.0%
TAGCTGGACAATGAATTGCA+TGG + chr3_4:53050976-53050995 None:intergenic 40.0%
!! GGTTTTGGTATATGTGGACT+TGG + chr3_4:53051045-53051064 None:intergenic 40.0%
CCAACCATAGAAGTTTATGG+CGG - chr3_4:53051063-53051082 Msa0506580:three_prime_UTR 40.0%
TTAGCCGCCATAAACTTCTA+TGG + chr3_4:53051070-53051089 None:intergenic 40.0%
AACTTCTTGAGAGAAAACCC+TGG + chr3_4:53051234-53051253 None:intergenic 40.0%
ATGATTGCAGTTCATGTTGG+TGG - chr3_4:53051513-53051532 Msa0506580:CDS 40.0%
ATAGATCTCTCTGACATACC+AGG - chr3_4:53051595-53051614 Msa0506580:CDS 40.0%
CTCGAAATGACTGATGAGTA+CGG - chr3_4:53051718-53051737 Msa0506580:intron 40.0%
GACCTTAGAGAGGAATTCAT+CGG + chr3_4:53051767-53051786 None:intergenic 40.0%
ATGTTTAGGTCATCGGCATA+GGG + chr3_4:53051847-53051866 None:intergenic 40.0%
CTCAGCATCTCAAAGTTCAA+TGG - chr3_4:53052528-53052547 Msa0506580:CDS 40.0%
ACTACGATCAGTTGAAGTTG+AGG - chr3_4:53052857-53052876 Msa0506580:intron 40.0%
TTCTTCCGTGTCGAAAAAAC+TGG - chr3_4:53053080-53053099 Msa0506580:CDS 40.0%
TCTTCCGTGTCGAAAAAACT+GGG - chr3_4:53053081-53053100 Msa0506580:CDS 40.0%
!!! CTTTCCCAGTTTTTTCGACA+CGG + chr3_4:53053088-53053107 None:intergenic 40.0%
GTTGTTCAAAAATGGGGCTA+AGG - chr3_4:53053107-53053126 Msa0506580:intron 40.0%
CAAAAATGGGGCTAAGGATA+CGG - chr3_4:53053113-53053132 Msa0506580:intron 40.0%
ATACGGCCCATTTAGAAGAT+GGG - chr3_4:53053130-53053149 Msa0506580:intron 40.0%
CACATGCCCATCTTCTAAAT+GGG + chr3_4:53053139-53053158 None:intergenic 40.0%
ATAGAGAACCTTCTTCTCCT+GGG + chr3_4:53053174-53053193 None:intergenic 40.0%
AATAGAGAACCTTCTTCTCC+TGG + chr3_4:53053175-53053194 None:intergenic 40.0%
!!! TATGCTTGGTTTTGTTTGGG+TGG - chr3_4:53053234-53053253 Msa0506580:CDS 40.0%
!!! ATGCTTGGTTTTGTTTGGGT+GGG - chr3_4:53053235-53053254 Msa0506580:CDS 40.0%
GACAATGAATTGCATGGTGG+TGG + chr3_4:53050970-53050989 None:intergenic 45.0%
CTGGACAATGAATTGCATGG+TGG + chr3_4:53050973-53050992 None:intergenic 45.0%
CCGCCATAAACTTCTATGGT+TGG + chr3_4:53051066-53051085 None:intergenic 45.0%
ATGGCAAGGGAGAGTCTATT+AGG + chr3_4:53051094-53051113 None:intergenic 45.0%
TAATAGACTCTCCCTTGCCA+TGG - chr3_4:53051093-53051112 Msa0506580:three_prime_UTR 45.0%
GCATGTGTATGATGCATGGA+TGG + chr3_4:53051176-53051195 None:intergenic 45.0%
! GCTGCTTTCTCAAAGATTCC+AGG + chr3_4:53051625-53051644 None:intergenic 45.0%
TAGAGAGGAATTCATCGGTC+CGG + chr3_4:53051762-53051781 None:intergenic 45.0%
GACCGATGAATTCCTCTCTA+AGG - chr3_4:53051762-53051781 Msa0506580:CDS 45.0%
GATGTTTAGGTCATCGGCAT+AGG + chr3_4:53051848-53051867 None:intergenic 45.0%
CACAGCGTTTCACGATGTTT+AGG + chr3_4:53051861-53051880 None:intergenic 45.0%
ATCGCATGTATGAAACAGCG+CGG - chr3_4:53051994-53052013 Msa0506580:CDS 45.0%
CTCTGAGTATGTAATCAGCG+CGG + chr3_4:53052043-53052062 None:intergenic 45.0%
!! AACCACTCCGGTAATGGAAT+CGG - chr3_4:53052087-53052106 Msa0506580:CDS 45.0%
TGATGACCCGATTCCATTAC+CGG + chr3_4:53052097-53052116 None:intergenic 45.0%
! AGGCAGCAAAGGAAGTTGAT+CGG + chr3_4:53052207-53052226 None:intergenic 45.0%
GTGATGTCATTCTCCTACGA+CGG - chr3_4:53052330-53052349 Msa0506580:CDS 45.0%
! TCGATTTTACGCGCGTGTTT+AGG + chr3_4:53052570-53052589 None:intergenic 45.0%
TGAGATAGATATCAACGGCG+CGG + chr3_4:53052605-53052624 None:intergenic 45.0%
CGCCGTTGATATCTATCTCA+AGG - chr3_4:53052605-53052624 Msa0506580:CDS 45.0%
GCTTCGTAGGATAGCTTCAA+TGG + chr3_4:53052778-53052797 None:intergenic 45.0%
GCGTGTAAAACTATCTGCAC+CGG + chr3_4:53052832-53052851 None:intergenic 45.0%
GATCAGTTGAAGTTGAGGAG+TGG - chr3_4:53052862-53052881 Msa0506580:intron 45.0%
GGAGAATGAGGAGTTACGAT+CGG - chr3_4:53052957-53052976 Msa0506580:intron 45.0%
GATACGGCCCATTTAGAAGA+TGG - chr3_4:53053129-53053148 Msa0506580:intron 45.0%
CCACATGCCCATCTTCTAAA+TGG + chr3_4:53053140-53053159 None:intergenic 45.0%
CCATTTAGAAGATGGGCATG+TGG - chr3_4:53053137-53053156 Msa0506580:intron 45.0%
ATGTGGATTTGACTAAGCCC+AGG - chr3_4:53053154-53053173 Msa0506580:intron 45.0%
!!! TGCTTGGTTTTGTTTGGGTG+GGG - chr3_4:53053236-53053255 Msa0506580:CDS 45.0%
!! TGAATTGCATGGTGGTGGGT+GGG + chr3_4:53050965-53050984 None:intergenic 50.0%
!! ATGAATTGCATGGTGGTGGG+TGG + chr3_4:53050966-53050985 None:intergenic 50.0%
GACAAGCCTTCGATCACAAG+CGG + chr3_4:53051367-53051386 None:intergenic 50.0%
CTTGTGATCGAAGGCTTGTC+TGG - chr3_4:53051367-53051386 Msa0506580:CDS 50.0%
GATCTCTCTGACATACCAGG+AGG - chr3_4:53051598-53051617 Msa0506580:CDS 50.0%
TCAAAGATTCCAGGACCTCC+TGG + chr3_4:53051616-53051635 None:intergenic 50.0%
TGAAGAAGGCGACCTTAGAG+AGG + chr3_4:53051777-53051796 None:intergenic 50.0%
GTGGTGGCAAGACTTGAGAA+CGG + chr3_4:53051818-53051837 None:intergenic 50.0%
TTCCTCAGTCCACCAATTCG+CGG + chr3_4:53051938-53051957 None:intergenic 50.0%
ATACTCAGAGCGATCACTCC+AGG - chr3_4:53052053-53052072 Msa0506580:CDS 50.0%
GATCACTCCAGGAGCTAGTT+CGG - chr3_4:53052064-53052083 Msa0506580:CDS 50.0%
!! ACCACTCCGGTAATGGAATC+GGG - chr3_4:53052088-53052107 Msa0506580:CDS 50.0%
GATCGGGAAAGCAGCTTTCT+CGG + chr3_4:53052190-53052209 None:intergenic 50.0%
! GGCAGCAAAGGAAGTTGATC+GGG + chr3_4:53052206-53052225 None:intergenic 50.0%
! TTCGGTTTTACAGACCGTGG+AGG + chr3_4:53052256-53052275 None:intergenic 50.0%
! GAGTTCGGTTTTACAGACCG+TGG + chr3_4:53052259-53052278 None:intergenic 50.0%
AGGAGAATGACATCACGAGG+AGG + chr3_4:53052326-53052345 None:intergenic 50.0%
CGTAGGAGAATGACATCACG+AGG + chr3_4:53052329-53052348 None:intergenic 50.0%
! AAACGCAGCGGTTTTCACAC+CGG - chr3_4:53052416-53052435 Msa0506580:CDS 50.0%
TTCAGCGAGGTACATGTCGA+CGG + chr3_4:53052490-53052509 None:intergenic 50.0%
TACACGCGTCGCAGAACAAA+CGG - chr3_4:53052803-53052822 Msa0506580:CDS 50.0%
GTCGCAGAACAAACGGTTAC+CGG - chr3_4:53052810-53052829 Msa0506580:intron 50.0%
TTGAGGAGTGGATCAGACGA+TGG - chr3_4:53052874-53052893 Msa0506580:intron 50.0%
TGACTAAGCCCAGGAGAAGA+AGG - chr3_4:53053163-53053182 Msa0506580:intron 50.0%
TCCCTTGCCATGGAGAGAAC+TGG - chr3_4:53051103-53051122 Msa0506580:three_prime_UTR 55.0%
GCCAGTTCTCTCCATGGCAA+GGG + chr3_4:53051107-53051126 None:intergenic 55.0%
CCATTGGCCAGTTCTCTCCA+TGG + chr3_4:53051113-53051132 None:intergenic 55.0%
CCATGGAGAGAACTGGCCAA+TGG - chr3_4:53051110-53051129 Msa0506580:three_prime_UTR 55.0%
AGCACGCTTCTGCCTCCATA+AGG - chr3_4:53051283-53051302 Msa0506580:CDS 55.0%
!! CTTGTGCCGCTTGTGATCGA+AGG - chr3_4:53051358-53051377 Msa0506580:CDS 55.0%
TCTGACATACCAGGAGGTCC+TGG - chr3_4:53051604-53051623 Msa0506580:CDS 55.0%
TACGGTGACAACAACCTCGC+TGG - chr3_4:53051736-53051755 Msa0506580:CDS 55.0%
GTCGCCTTCTTCACTCTCAC+CGG - chr3_4:53051784-53051803 Msa0506580:CDS 55.0%
AGAGCCGGTGAGAGTGAAGA+AGG + chr3_4:53051791-53051810 None:intergenic 55.0%
CATCGGCATAGGGAAGAAGG+TGG + chr3_4:53051837-53051856 None:intergenic 55.0%
GGTCATCGGCATAGGGAAGA+AGG + chr3_4:53051840-53051859 None:intergenic 55.0%
TGTTGAAGCTGCAAGCGCCA+AGG - chr3_4:53051879-53051898 Msa0506580:CDS 55.0%
TCCTCAGTCCACCAATTCGC+GGG + chr3_4:53051937-53051956 None:intergenic 55.0%
TGTAATCAGCGCGGCTGCAA+TGG + chr3_4:53052034-53052053 None:intergenic 55.0%
AGTGGTTCCGAACTAGCTCC+TGG + chr3_4:53052074-53052093 None:intergenic 55.0%
GAGCTAGTTCGGAACCACTC+CGG - chr3_4:53052075-53052094 Msa0506580:CDS 55.0%
GTTCGGAACCACTCCGGTAA+TGG - chr3_4:53052081-53052100 Msa0506580:CDS 55.0%
ACCCGATTCCATTACCGGAG+TGG + chr3_4:53052092-53052111 None:intergenic 55.0%
GGAAAGCAGCTTTCTCGGAC+GGG + chr3_4:53052185-53052204 None:intergenic 55.0%
GGGAAAGCAGCTTTCTCGGA+CGG + chr3_4:53052186-53052205 None:intergenic 55.0%
! TTTTACAGACCGTGGAGGCG+CGG + chr3_4:53052251-53052270 None:intergenic 55.0%
GAAGAGTTTCTCGCCGTCGT+AGG + chr3_4:53052346-53052365 None:intergenic 55.0%
! AACGCAGCGGTTTTCACACC+GGG - chr3_4:53052417-53052436 Msa0506580:CDS 55.0%
TCAGACGATGGCGAATGCGA+CGG - chr3_4:53052886-53052905 Msa0506580:intron 55.0%
GGAGAGGAATCGGTTAGCGA+CGG - chr3_4:53052918-53052937 Msa0506580:intron 55.0%
GTTAGCGACGGATGTGTCGT+TGG - chr3_4:53052930-53052949 Msa0506580:intron 55.0%
! GACGGATGTGTCGTTGGTGA+GGG - chr3_4:53052936-53052955 Msa0506580:intron 55.0%
! GTCGTTGGTGAGGGAGAATG+AGG - chr3_4:53052945-53052964 Msa0506580:intron 55.0%
GCAGCAGAAGAACGTTACGC+CGG - chr3_4:53053017-53053036 Msa0506580:intron 55.0%
CAGCAGAAGAACGTTACGCC+GGG - chr3_4:53053018-53053037 Msa0506580:intron 55.0%
GAACTCAACGACGTCGTTCC+CGG + chr3_4:53053039-53053058 None:intergenic 55.0%
GGCCAGTTCTCTCCATGGCA+AGG + chr3_4:53051108-53051127 None:intergenic 60.0%
GTGACAACAACCTCGCTGGC+CGG - chr3_4:53051740-53051759 Msa0506580:CDS 60.0%
!! CTTCACTCTCACCGGCTCTG+TGG - chr3_4:53051792-53051811 Msa0506580:CDS 60.0%
CTTGAGAACGGCCACAGAGC+CGG + chr3_4:53051806-53051825 None:intergenic 60.0%
CGGCATAGGGAAGAAGGTGG+TGG + chr3_4:53051834-53051853 None:intergenic 60.0%
ATTCGCCTCGCTGCAAGCCT+TGG + chr3_4:53051899-53051918 None:intergenic 60.0%
AATTCGCGGGTGAGCGGCTA+GGG + chr3_4:53051924-53051943 None:intergenic 60.0%
TCCACCAATTCGCGGGTGAG+CGG + chr3_4:53051930-53051949 None:intergenic 60.0%
!! ACCCGCGAATTGGTGGACTG+AGG - chr3_4:53051933-53051952 Msa0506580:CDS 60.0%
ATCAGCGCGGCTGCAATGGT+TGG + chr3_4:53052030-53052049 None:intergenic 60.0%
CGTCGACGGTTACATGCTCG+AGG + chr3_4:53052302-53052321 None:intergenic 60.0%
CATCACGAGGAGGTCGTCGA+CGG + chr3_4:53052316-53052335 None:intergenic 60.0%
CTCCGTCGCTATGCTACGTG+TGG - chr3_4:53052458-53052477 Msa0506580:CDS 60.0%
CGCCACACGTAGCATAGCGA+CGG + chr3_4:53052463-53052482 None:intergenic 60.0%
CTCGCTGAAATCGCCGCGTA+CGG - chr3_4:53052501-53052520 Msa0506580:CDS 60.0%
GATGCTGAGTTCGCCGTACG+CGG + chr3_4:53052517-53052536 None:intergenic 60.0%
GAGCTGCGACGGAGAGGAAT+CGG - chr3_4:53052908-53052927 Msa0506580:intron 60.0%
! CGACGGATGTGTCGTTGGTG+AGG - chr3_4:53052935-53052954 Msa0506580:intron 60.0%
ATTCATCGGTCCGGCCAGCG+AGG + chr3_4:53051753-53051772 None:intergenic 65.0%
AAGCGCCAAGGCTTGCAGCG+AGG - chr3_4:53051891-53051910 Msa0506580:CDS 65.0%
CAATTCGCGGGTGAGCGGCT+AGG + chr3_4:53051925-53051944 None:intergenic 65.0%
CTAGCCGCTCACCCGCGAAT+TGG - chr3_4:53051923-53051942 Msa0506580:CDS 65.0%
AGCGCGGCTGCAATGGTTGG+AGG + chr3_4:53052027-53052046 None:intergenic 65.0%
CGCAACGGAGGAGGCAGCAA+AGG + chr3_4:53052218-53052237 None:intergenic 65.0%
!! GGTGGATTGCGCAACGGAGG+AGG + chr3_4:53052227-53052246 None:intergenic 65.0%
!! GGAGGTGGATTGCGCAACGG+AGG + chr3_4:53052230-53052249 None:intergenic 65.0%
!! CGCGGAGGTGGATTGCGCAA+CGG + chr3_4:53052233-53052252 None:intergenic 65.0%
AATCCACCTCCGCGCCTCCA+CGG - chr3_4:53052239-53052258 Msa0506580:CDS 65.0%
CGTACGCGGCGATTTCAGCG+AGG + chr3_4:53052503-53052522 None:intergenic 65.0%
CGCGTGTACACGCGCTTCGT+AGG + chr3_4:53052791-53052810 None:intergenic 65.0%
CGAATGCGACGGAGCTGCGA+CGG - chr3_4:53052897-53052916 Msa0506580:intron 65.0%
GCCGCTCACCCGCGAATTGG+TGG - chr3_4:53051926-53051945 Msa0506580:CDS 70.0%
! TACAGACCGTGGAGGCGCGG+AGG + chr3_4:53052248-53052267 None:intergenic 70.0%
! AGACCGTGGAGGCGCGGAGG+TGG + chr3_4:53052245-53052264 None:intergenic 75.0%
GCGACGGAGCTGCGACGGAG+AGG - chr3_4:53052902-53052921 Msa0506580:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 53050847 53053504 53050847 ID=Msa0506580;Name=Msa0506580
chr3_4 mRNA 53050847 53053504 53050847 ID=Msa0506580-mRNA-1;Parent=Msa0506580;Name=Msa0506580-mRNA-1;_AED=0.02;_eAED=0.02;_QI=232|1|1|1|1|1|4|304|568
chr3_4 exon 53050847 53051630 53050847 ID=Msa0506580-mRNA-1:exon:11704;Parent=Msa0506580-mRNA-1
chr3_4 exon 53051725 53052828 53051725 ID=Msa0506580-mRNA-1:exon:11703;Parent=Msa0506580-mRNA-1
chr3_4 exon 53053047 53053116 53053047 ID=Msa0506580-mRNA-1:exon:11702;Parent=Msa0506580-mRNA-1
chr3_4 exon 53053220 53053504 53053220 ID=Msa0506580-mRNA-1:exon:11701;Parent=Msa0506580-mRNA-1
chr3_4 five_prime_UTR 53053273 53053504 53053273 ID=Msa0506580-mRNA-1:five_prime_utr;Parent=Msa0506580-mRNA-1
chr3_4 CDS 53053220 53053272 53053220 ID=Msa0506580-mRNA-1:cds;Parent=Msa0506580-mRNA-1
chr3_4 CDS 53053047 53053116 53053047 ID=Msa0506580-mRNA-1:cds;Parent=Msa0506580-mRNA-1
chr3_4 CDS 53051725 53052828 53051725 ID=Msa0506580-mRNA-1:cds;Parent=Msa0506580-mRNA-1
chr3_4 CDS 53051151 53051630 53051151 ID=Msa0506580-mRNA-1:cds;Parent=Msa0506580-mRNA-1
chr3_4 three_prime_UTR 53050847 53051150 53050847 ID=Msa0506580-mRNA-1:three_prime_utr;Parent=Msa0506580-mRNA-1
Gene Sequence

>Msa0506580

ATGGCGGCTAATCCTAATAGACTCTCCCTTGCCATGGAGAGAACTGGCCAATGGGTTTTCTCTCAAGAAGTTCCAACTGATGTTATAGTTGAAGTTGGAGAAGCACGCTTCTGCCTCCATAAGTTCATGTTGGTGGCAAAGAGCAACTACATCAGAAAACTAATAATGGAATCAGATGAGACTCATCTCACCAGAATAGATCTCTCTGACATACCAGGAGGTCCTGGAATCTTTGAGAAAGCAGCTAAATTCTGTTACGGTGTGAACTTCGAGATAACTGTCCATAATGTCGCAGTTTTACGATGTGCTGCAGAGTTTCTCGAAATGACTGATGAGTACGGTGACAACAACCTCGCTGGCCGGACCGATGAATTCCTCTCTAAGGTCGCCTTCTTCACTCTCACCGGCTCTGTGGCCGTTCTCAAGTCTTGCCACCACCTTCTTCCCTATGCCGATGACCTAAACATCGTGAAACGCTGTGTTGAAGCTGCAAGCGCCAAGGCTTGCAGCGAGGCGAATTTCCCTAGCCGCTCACCCGCGAATTGGTGGACTGAGGAACTAGCTGTTCTTGATATTGATTTCTTCAGTAGAGTGATCGCATGTATGAAACAGCGCGGCGCTAAGCCTCCAACCATTGCAGCCGCGCTGATTACATACTCAGAGCGATCACTCCAGGAGCTAGTTCGGAACCACTCCGGTAATGGAATCGGGTCATCAGATTACAATGATTCAGACATCAGATCAAAACAACGAAGCCTTCTAGAATCAATTATCAATCTCTTCCCGTCCGAGAAAGCTGCTTTCCCGATCAACTTCCTTTGCTGCCTCCTCCGTTGCGCAATCCACCTCCGCGCCTCCACGGTCTGTAAAACCGAACTCGAGAAACGAATTTCATCAATCCTCGAGCATGTAACCGTCGACGACCTCCTCGTGATGTCATTCTCCTACGACGGCGAGAAACTCTTCGATCTAGAAAGCGTTCGCAGAATAATCTCAGTATTCGTTGAAAAAGAGAAAAACGCAGCGGTTTTCACACCGGGAGAACTCAAAGAATCATTCTCCGTCGCTATGCTACGTGTGGCGAAAACCGTCGACATGTACCTCGCTGAAATCGCCGCGTACGGCGAACTCAGCATCTCAAAGTTCAATGGAATCGCTGTTCTTATTCCTAAACACGCGCGTAAAATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCGAAGCTAGATGAAATCGAAAGAGAGAAAGTATGCAGCATAATGGATCCATTGAAGCTATCCTACGAAGCGCGTGTACACGCGTCGCAGAACAAACGGTTACCGGTGCAGATAGTTTTACACGCGCTATACTACGATCAGTTGAAGTTGAGGAGTGGATCAGACGATGGCGAATGCGACGGAGCTGCGACGGAGAGGAATCGGTTAGCGACGGATGTGTCGTTGGTGAGGGAGAATGAGGAGTTACGATCGGAATTGACGAAGATGAAGATGTACATTACGGATATGCAGCAGCAGAAGAACGTTACGCCGGGAACGACGTCGTTGAGTTCGAGTAAGAAGACAACGTTTTTTTCTTCCGTGTCGAAAAAACTGGGAAAGTTGTTCAAAAATGGGGCTAAGGATACGGCCCATTTAGAAGATGGGCATGTGGATTTGACTAAGCCCAGGAGAAGAAGGTTCTCTATTTCTTAA
Protein sequence

>Msa0506580

MAANPNRLSLAMERTGQWVFSQEVPTDVIVEVGEARFCLHKFMLVAKSNYIRKLIMESDETHLTRIDLSDIPGGPGIFEKAAKFCYGVNFEITVHNVAVLRCAAEFLEMTDEYGDNNLAGRTDEFLSKVAFFTLTGSVAVLKSCHHLLPYADDLNIVKRCVEAASAKACSEANFPSRSPANWWTEELAVLDIDFFSRVIACMKQRGAKPPTIAAALITYSERSLQELVRNHSGNGIGSSDYNDSDIRSKQRSLLESIINLFPSEKAAFPINFLCCLLRCAIHLRASTVCKTELEKRISSILEHVTVDDLLVMSFSYDGEKLFDLESVRRIISVFVEKEKNAAVFTPGELKESFSVAMLRVAKTVDMYLAEIAAYGELSISKFNGIAVLIPKHARKIDDDLYRAVDIYLKVHPKLDEIEREKVCSIMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGSDDGECDGAATERNRLATDVSLVRENEELRSELTKMKMYITDMQQQKNVTPGTTSLSSSKKTTFFSSVSKKLGKLFKNGAKDTAHLEDGHVDLTKPRRRRFSIS*