AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0459790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459790 MtrunA17_Chr3g0108331 97.711 568 13 0 1 568 1 568 0.0 1152
Msa0459790 MtrunA17_Chr5g0432861 71.897 580 143 7 4 568 5 579 0.0 834
Msa0459790 MtrunA17_Chr5g0401451 39.902 614 307 10 8 566 24 630 9.66e-145 431
Msa0459790 MtrunA17_Chr4g0053841 38.843 605 312 10 12 568 1 595 1.14e-136 409
Msa0459790 MtrunA17_Chr4g0010091 38.715 576 300 10 8 539 16 582 6.70e-134 403
Msa0459790 MtrunA17_Chr1g0195911 36.013 622 318 16 7 568 20 621 2.72e-121 371
Msa0459790 MtrunA17_Chr7g0245201 36.689 586 326 11 23 568 60 640 2.11e-117 361
Msa0459790 MtrunA17_Chr7g0268781 34.410 619 323 15 7 563 20 617 7.03e-115 354
Msa0459790 MtrunA17_Chr2g0303541 36.007 586 313 13 11 537 12 594 3.39e-111 345
Msa0459790 MtrunA17_Chr2g0285511 37.325 501 255 8 11 463 12 501 1.19e-106 332
Msa0459790 MtrunA17_Chr8g0374011 34.056 646 323 15 16 563 11 651 8.88e-104 327
Msa0459790 MtrunA17_Chr1g0181181 37.419 465 270 7 18 463 20 482 1.19e-102 321
Msa0459790 MtrunA17_Chr2g0279481 32.362 618 327 7 12 541 32 646 3.08e-101 321
Msa0459790 MtrunA17_Chr4g0050021 31.981 616 324 11 13 541 33 640 8.55e-98 311
Msa0459790 MtrunA17_Chr2g0320691 32.979 564 320 9 3 510 2 563 6.08e-96 305
Msa0459790 MtrunA17_Chr8g0382231 32.563 519 305 9 24 508 52 559 2.12e-91 293
Msa0459790 MtrunA17_Chr4g0076521 32.826 460 286 5 19 460 21 475 4.80e-85 276
Msa0459790 MtrunA17_Chr5g0401341 34.884 473 258 9 23 460 26 483 4.24e-83 271
Msa0459790 MtrunA17_Chr5g0412591 35.845 491 260 10 19 469 21 496 1.36e-82 270
Msa0459790 MtrunA17_Chr1g0199631 33.839 461 261 8 42 464 8 462 1.74e-82 268
Msa0459790 MtrunA17_Chr1g0150191 33.607 488 273 8 11 459 12 487 2.04e-82 270
Msa0459790 MtrunA17_Chr1g0207461 33.058 484 270 9 21 465 25 493 9.81e-82 268
Msa0459790 MtrunA17_Chr1g0191711 30.385 520 327 9 1 510 34 528 2.90e-77 254
Msa0459790 MtrunA17_Chr8g0367891 34.497 487 277 9 27 482 29 504 4.17e-74 247
Msa0459790 MtrunA17_Chr2g0290741 30.635 457 282 6 23 460 25 465 1.15e-70 237
Msa0459790 MtrunA17_Chr4g0003891 32.298 322 198 4 161 475 20 328 1.34e-50 180
Msa0459790 MtrunA17_Chr2g0332281 34.615 286 175 3 183 466 24 299 9.93e-49 174
Msa0459790 MtrunA17_Chr4g0037661 25.338 517 275 13 66 507 49 529 2.41e-40 154
Msa0459790 MtrunA17_Chr4g0023801 25.191 524 313 13 33 508 14 506 6.09e-37 144
Msa0459790 MtrunA17_Chr1g0206621 42.073 164 89 3 28 189 72 231 6.87e-37 137
Msa0459790 MtrunA17_Chr1g0163311 25.698 537 299 16 34 509 14 511 1.48e-35 140
Msa0459790 MtrunA17_Chr2g0280541 26.410 390 220 12 91 446 2 358 3.23e-25 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459790 AT2G30520.1 66.781 584 175 6 4 568 10 593 0.0 793
Msa0459790 AT2G30520.2 66.606 545 163 6 43 568 1 545 0.0 731
Msa0459790 AT2G30520.3 66.606 545 163 6 43 568 1 545 0.0 731
Msa0459790 AT5G67385.1 38.436 614 319 13 2 568 3 604 1.59e-130 394
Msa0459790 AT5G48800.1 38.356 584 283 11 7 539 22 579 6.62e-129 390
Msa0459790 AT1G03010.1 35.354 594 310 13 7 539 20 600 2.73e-118 364
Msa0459790 AT1G03010.2 35.640 578 299 12 23 539 8 573 6.20e-117 359
Msa0459790 AT1G03010.3 35.640 578 299 12 23 539 34 599 2.04e-116 359
Msa0459790 AT5G67385.4 36.491 570 305 12 45 568 1 559 2.98e-112 346
Msa0459790 AT5G67385.5 36.491 570 305 12 45 568 1 559 2.98e-112 346
Msa0459790 AT5G67385.2 36.491 570 305 12 45 568 1 559 2.98e-112 346
Msa0459790 AT5G67385.3 36.491 570 305 12 45 568 1 559 2.98e-112 346
Msa0459790 AT2G47860.1 36.559 558 282 12 7 509 21 561 2.99e-112 348
Msa0459790 AT1G30440.1 34.350 623 329 13 11 555 12 632 9.34e-111 345
Msa0459790 AT3G08570.1 34.965 572 317 12 19 547 30 589 3.47e-107 335
Msa0459790 AT2G47860.3 35.112 581 282 13 7 509 21 584 9.06e-107 335
Msa0459790 AT3G08660.1 34.783 552 314 14 19 545 30 560 2.71e-102 321
Msa0459790 AT5G03250.1 36.853 502 264 10 9 463 10 505 3.22e-102 321
Msa0459790 AT5G13600.1 35.502 538 301 12 18 511 20 555 1.12e-99 314
Msa0459790 AT3G08660.3 33.846 520 299 13 51 545 1 500 8.73e-94 297
Msa0459790 AT3G49970.1 34.705 559 288 16 37 568 7 515 3.52e-92 292
Msa0459790 AT3G49970.2 34.705 559 288 16 37 568 7 515 3.52e-92 292
Msa0459790 AT2G47860.4 36.986 438 228 10 7 410 21 444 1.03e-86 276
Msa0459790 AT5G66560.1 31.804 654 316 14 16 547 10 655 2.24e-86 281
Msa0459790 AT3G50840.1 33.731 587 338 12 10 565 1 567 4.13e-86 278
Msa0459790 AT2G14820.2 33.402 485 266 9 22 465 25 493 1.44e-82 271
Msa0459790 AT2G14820.1 33.402 485 266 9 22 465 25 493 1.44e-82 271
Msa0459790 AT5G66560.4 33.453 559 287 11 66 547 66 616 3.48e-82 270
Msa0459790 AT5G66560.3 33.453 559 287 11 66 547 76 626 4.23e-82 270
Msa0459790 AT2G47860.6 35.141 461 228 11 7 410 21 467 1.89e-81 263
Msa0459790 AT5G10250.2 30.490 551 324 11 18 527 44 576 2.25e-81 267
Msa0459790 AT5G10250.1 31.238 541 318 12 18 527 44 561 3.64e-80 264
Msa0459790 AT3G44820.1 30.071 562 319 11 18 510 17 573 2.55e-79 263
Msa0459790 AT3G50840.2 33.575 551 316 11 45 565 1 531 1.14e-77 255
Msa0459790 AT3G50840.3 33.575 551 316 11 45 565 1 531 1.14e-77 255
Msa0459790 AT1G67900.5 34.469 499 274 5 21 469 23 518 2.98e-77 256
Msa0459790 AT1G67900.1 34.469 499 274 5 21 469 23 518 2.98e-77 256
Msa0459790 AT1G67900.3 34.469 499 274 5 21 469 23 518 2.98e-77 256
Msa0459790 AT1G67900.6 34.469 499 274 5 21 469 23 518 2.98e-77 256
Msa0459790 AT1G67900.2 34.469 499 274 5 21 469 23 518 2.98e-77 256
Msa0459790 AT1G67900.4 34.469 499 274 5 21 469 23 518 2.98e-77 256
Msa0459790 AT2G47860.5 34.498 458 228 11 109 509 1 443 3.77e-77 253
Msa0459790 AT2G47860.2 34.498 458 228 11 109 509 1 443 3.77e-77 253
Msa0459790 AT5G67440.3 33.619 467 269 9 21 460 24 476 2.91e-75 250
Msa0459790 AT5G67440.1 33.619 467 269 9 21 460 24 476 2.91e-75 250
Msa0459790 AT4G31820.1 31.847 471 260 8 23 460 26 468 7.12e-75 249
Msa0459790 AT3G08660.2 34.719 409 230 10 19 411 30 417 1.53e-73 241
Msa0459790 AT5G47800.3 30.435 460 294 6 19 458 21 474 4.33e-72 241
Msa0459790 AT5G47800.1 30.435 460 294 6 19 458 21 474 4.33e-72 241
Msa0459790 AT5G47800.4 30.435 460 294 6 19 458 21 474 4.33e-72 241
Msa0459790 AT5G47800.2 30.380 474 301 7 23 476 138 602 7.54e-71 240
Msa0459790 AT5G03250.2 34.586 399 211 8 109 463 1 393 1.29e-70 235
Msa0459790 AT2G23050.1 31.501 473 260 8 21 468 24 457 3.31e-70 234
Msa0459790 AT4G37590.1 31.568 472 261 9 21 460 24 465 1.61e-69 234
Msa0459790 AT5G67440.2 32.739 449 261 9 39 460 5 439 2.61e-68 231
Msa0459790 AT5G66560.2 32.359 479 232 10 16 410 10 480 3.93e-65 220
Msa0459790 AT4G31820.2 30.700 443 246 8 51 460 1 415 7.17e-65 221
Msa0459790 AT3G26490.1 30.140 501 269 11 21 458 23 505 1.20e-60 211
Msa0459790 AT3G26490.3 30.140 501 269 11 21 458 23 505 1.20e-60 211
Msa0459790 AT3G26490.4 30.140 501 269 11 21 458 23 505 1.20e-60 211
Msa0459790 AT1G52770.1 36.364 286 166 4 183 461 28 304 1.42e-50 181
Msa0459790 AT3G15570.1 35.374 294 158 4 185 461 31 309 2.55e-48 174
Msa0459790 AT5G48130.1 27.926 487 271 13 18 467 33 476 3.61e-48 177
Msa0459790 AT5G64330.2 35.409 257 125 3 14 229 42 298 2.54e-46 173
Msa0459790 AT5G64330.2 34.363 259 139 2 225 461 357 606 1.20e-39 154
Msa0459790 AT3G26490.2 29.462 465 245 12 21 420 23 469 3.52e-46 170
Msa0459790 AT5G64330.1 35.409 257 125 3 14 229 42 298 4.03e-46 173
Msa0459790 AT5G64330.1 28.912 377 211 5 225 553 357 724 5.44e-40 155
Msa0459790 AT3G19850.1 25.690 471 279 7 37 459 17 464 3.52e-44 165
Msa0459790 AT2G23050.2 29.211 380 210 7 109 468 1 341 2.63e-43 159
Msa0459790 AT5G64330.3 34.363 259 139 2 225 461 298 547 5.79e-40 154
Msa0459790 AT5G64330.3 35.043 234 111 3 37 229 6 239 1.62e-37 147
Msa0459790 AT1G50280.1 27.215 474 267 12 33 454 13 460 2.44e-39 151
Msa0459790 AT1G50280.2 27.356 435 245 10 66 454 18 427 4.68e-38 147
Msa0459790 AT3G03510.1 24.681 470 306 11 74 537 4 431 1.16e-32 131
Msa0459790 AT5G17580.2 24.838 463 297 10 26 462 22 459 1.15e-30 126
Msa0459790 AT5G17580.1 24.838 463 297 10 26 462 7 444 1.49e-30 126
Msa0459790 AT3G22104.1 25.166 453 268 14 26 445 6 420 3.22e-27 115
Msa0459790 AT3G22104.4 24.474 380 219 11 96 445 4 345 4.00e-19 90.5
Msa0459790 AT3G22104.2 24.474 380 219 11 96 445 4 345 4.00e-19 90.5
Msa0459790 AT3G22104.3 24.474 380 219 11 96 445 4 345 4.00e-19 90.5
Msa0459790 AT3G49900.2 32.934 167 89 7 9 163 49 204 4.97e-13 72.0
Msa0459790 AT3G49900.1 32.934 167 89 7 9 163 49 204 5.20e-13 72.0

Find 142 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAGGCCCATCTTCTAAA+TGG 0.198824 3_3:+56609699 None:intergenic
GTTAATATATAAGGACATTT+TGG 0.214594 3_3:+56611883 None:intergenic
TGAACTTCTATGGTTGGTTT+TGG 0.265183 3_3:+56611768 None:intergenic
CACAATACTGATCTGTCATT+TGG 0.336914 3_3:+56611110 None:intergenic
CTACATCAGAAAACTAATAA+TGG 0.343477 3_3:-56611284 Msa0459790:CDS
TGATGACTGGATTCCGTTAC+CGG 0.344473 3_3:+56610736 None:intergenic
CTTTCGATTTCATCTAGCTT+TGG 0.349959 3_3:+56610109 None:intergenic
GAACTCAACGACGTCGTTCC+CGG 0.352390 3_3:+56609800 None:intergenic
AACATTGAACTTTGTGTTTG+TGG 0.357568 3_3:+56611963 None:intergenic
ATGGCAAGAGAAAGTCTATT+AGG 0.360996 3_3:+56611734 None:intergenic
GATTGATAATTGATTCTAGA+AGG 0.367450 3_3:+56610675 None:intergenic
GCTGCTTTCTCAAAGATTCC+AGG 0.370649 3_3:+56611208 None:intergenic
TTAGCCGCCATGAACTTCTA+TGG 0.375043 3_3:+56611758 None:intergenic
GGTGGGTGGGTTAATATATA+AGG 0.390757 3_3:+56611874 None:intergenic
CATACTAGTTGCTTTATGCT+TGG 0.412713 3_3:-56609616 Msa0459790:three_prime_UTR
ATCGTAAAACTGCGACATTA+TGG 0.413061 3_3:+56611149 None:intergenic
CTAGCCGTTCACCTGCGAAT+TGG 0.418409 3_3:-56610907 Msa0459790:CDS
TATTGTGACAACAACCTTGC+TGG 0.422700 3_3:-56611094 Msa0459790:CDS
TTTCTTAACTATTTAGTCTA+GGG 0.425427 3_3:+56609364 None:intergenic
TGAGATTCGTTTCTCGAGTT+CGG 0.432245 3_3:+56610559 None:intergenic
GTCACAGAACAAACGGTTAC+CGG 0.441900 3_3:-56610026 Msa0459790:CDS
TCTGACATACCAGGAGGTCC+TGG 0.459917 3_3:-56611226 Msa0459790:CDS
ATTTCTTAACTATTTAGTCT+AGG 0.461342 3_3:+56609363 None:intergenic
GCCGTTCACCTGCGAATTGG+TGG 0.462258 3_3:-56610904 Msa0459790:CDS
AGCGCCGCGCTGTTTCATAC+AGG 0.463940 3_3:+56610832 None:intergenic
TCTCTTGCCATGGAGAGAAC+TGG 0.465318 3_3:-56611722 Msa0459790:CDS
AGTGGTTTCGAACTAGCTCC+TGG 0.465595 3_3:+56610759 None:intergenic
CACAGGCCCATCTTCTAAAT+GGG 0.466417 3_3:+56609700 None:intergenic
AGCGCGGCTGCAATGGTTGG+AGG 0.466445 3_3:+56610806 None:intergenic
TCAAAGATTCCAGGACCTCC+TGG 0.468786 3_3:+56611217 None:intergenic
CCGCCATGAACTTCTATGGT+TGG 0.474905 3_3:+56611762 None:intergenic
ATTCGCCTCGCTACAAGCCT+TGG 0.479006 3_3:+56610934 None:intergenic
AATAGAGAACCTTCTTCTCC+TGG 0.481171 3_3:+56609664 None:intergenic
GACAATGAATTGCATGGTGG+TGG 0.482861 3_3:+56611856 None:intergenic
CATCGACGGTTACGTGTTCA+AGG 0.483329 3_3:+56610531 None:intergenic
AATGATTCTTTGAGTTCTCC+CGG 0.492260 3_3:+56610395 None:intergenic
CATCTCAGGATTCGTTGAAA+AGG 0.493684 3_3:-56610441 Msa0459790:CDS
AGACGGTGGAGGCGCGGAGG+TGG 0.493981 3_3:+56610588 None:intergenic
GAAGATGAAAATGTACATTA+CGG 0.494568 3_3:-56609849 Msa0459790:CDS
TATGTTGAGGTCATCGGCAT+AGG 0.494912 3_3:+56610985 None:intergenic
AAACCAACCATAGAAGTTCA+TGG 0.495006 3_3:-56611765 Msa0459790:exon
GATACGGCCCATTTAGAAGA+TGG 0.496730 3_3:-56609707 Msa0459790:CDS
TGACTAAGCCCAGGAGAAGA+AGG 0.496892 3_3:-56609673 Msa0459790:CDS
GAGCTGCGAGCGAGAGGAAT+CGG 0.499624 3_3:-56609928 Msa0459790:CDS
CGCAACGGAGGAGGCAGCAG+AGG 0.501740 3_3:+56610615 None:intergenic
CTCGCTGAAATCGCCGCGTA+CGG 0.501994 3_3:-56610329 Msa0459790:CDS
GTTCGAAACCACTCCGGTAA+CGG 0.504054 3_3:-56610749 Msa0459790:CDS
GGAAAAGCTGCTTTCTCCGA+TGG 0.507789 3_3:+56610647 None:intergenic
TAGAGAGAAATTCGTCGGTC+CGG 0.509641 3_3:+56611071 None:intergenic
ATCAGCGCGGCTGCAATGGT+TGG 0.510359 3_3:+56610803 None:intergenic
GGAGCCAGTGAGAGTGAAGA+AGG 0.510417 3_3:+56611042 None:intergenic
CGTTGAAGCTGCAAGCGCCA+AGG 0.511556 3_3:-56610951 Msa0459790:CDS
GCTTCGTAGGATAGTTTCAA+TGG 0.512007 3_3:+56610061 None:intergenic
TAATAGACTTTCTCTTGCCA+TGG 0.513045 3_3:-56611732 Msa0459790:CDS
GGTGGATTGCGCAACGGAGG+AGG 0.517135 3_3:+56610606 None:intergenic
AAATTTATGACTGAGTTAGC+TGG 0.521430 3_3:+56611834 None:intergenic
TCCTCAGTCCACCAATTCGC+AGG 0.523840 3_3:+56610896 None:intergenic
TTTCACTATGTTGAGGTCAT+CGG 0.525457 3_3:+56610979 None:intergenic
ATGGTTTATGACAATGTTTG+TGG 0.527102 3_3:-56609506 Msa0459790:three_prime_UTR
AAAGCAGCTAAATTCTGTTA+CGG 0.532489 3_3:-56611193 Msa0459790:CDS
TGTAATCAGCGCGGCTGCAA+TGG 0.540037 3_3:+56610799 None:intergenic
AATTCGCAGGTGAACGGCTA+GGG 0.542580 3_3:+56610909 None:intergenic
GTCGCCTTCTTCACTCTCAC+TGG 0.542590 3_3:-56611046 Msa0459790:CDS
ATATTCAGAGCGATCACTCC+AGG 0.545150 3_3:-56610777 Msa0459790:CDS
ATTAAACATTACACAATCAA+AGG 0.548214 3_3:+56609442 None:intergenic
GTTAGCAACGGATGTGTCGT+TGG 0.548263 3_3:-56609906 Msa0459790:CDS
ACTGATGTTATAGTTGAAGT+AGG 0.549573 3_3:-56611573 Msa0459790:CDS
ACTTCAACTATAACATCAGT+TGG 0.549705 3_3:+56611576 None:intergenic
CGCCACACGCAGCATAGCGA+CGG 0.549727 3_3:+56610370 None:intergenic
ATTCGTCGGTCCGGCCAGCA+AGG 0.550198 3_3:+56611080 None:intergenic
ATTCACTGTAATCTGATGAC+TGG 0.550628 3_3:+56610723 None:intergenic
AGCGTTCGCAGAGTCATCTC+AGG 0.551426 3_3:-56610455 Msa0459790:CDS
GGTCATCGGCATAGGGAAGA+AGG 0.552481 3_3:+56610993 None:intergenic
GTGACAACAACCTTGCTGGC+CGG 0.554274 3_3:-56611090 Msa0459790:CDS
CGGCGTCAACTTCGAGATAA+CGG 0.554901 3_3:-56611173 Msa0459790:CDS
TTCACGCGTCACAGAACAAA+CGG 0.555196 3_3:-56610033 Msa0459790:CDS
ATAGAGAACCTTCTTCTCCT+GGG 0.555992 3_3:+56609665 None:intergenic
ATGAATTGCATGGTGGTGGG+TGG 0.555992 3_3:+56611860 None:intergenic
GAAGAGTTTCTCGCCGTCGT+AGG 0.556907 3_3:+56610487 None:intergenic
GCGACGGAGCTGCGAGCGAG+AGG 0.557594 3_3:-56609934 Msa0459790:CDS
CAATTCGCAGGTGAACGGCT+AGG 0.558263 3_3:+56610908 None:intergenic
ATGATTGCAGTTCATGTTGG+TGG 0.563694 3_3:-56611317 Msa0459790:intron
ATGTTGAGGTCATCGGCATA+GGG 0.565686 3_3:+56610986 None:intergenic
CGCGTGAACACGCGCTTCGT+AGG 0.566240 3_3:+56610048 None:intergenic
CGCCGTTGATATCTATCTCA+AGG 0.566265 3_3:-56610225 Msa0459790:intron
TCCACCAATTCGCAGGTGAA+CGG 0.566547 3_3:+56610903 None:intergenic
AGGCAGCAGAGGAAGTTGAT+CGG 0.571060 3_3:+56610626 None:intergenic
ATACGGCCCATTTAGAAGAT+GGG 0.571365 3_3:-56609706 Msa0459790:CDS
CTCAGCATCTCAAAATTCAA+CGG 0.574378 3_3:-56610302 Msa0459790:CDS
GAAAAGCTGCTTTCTCCGAT+GGG 0.576808 3_3:+56610648 None:intergenic
CGCGGAGGTGGATTGCGCAA+CGG 0.577702 3_3:+56610600 None:intergenic
CCATTGGCCAGTTCTCTCCA+TGG 0.580279 3_3:+56611715 None:intergenic
TTAGTCTAGGGATCAATACA+TGG 0.582819 3_3:+56609376 None:intergenic
GTCGTTGGTGAGAGAGAATG+AGG 0.582997 3_3:-56609891 Msa0459790:CDS
GAAGGTGGTGGCAAGACTTG+AGG 0.587288 3_3:+56611011 None:intergenic
CGGCATAGGGAAGAAGGTGG+TGG 0.587751 3_3:+56610999 None:intergenic
CAGCAGAAGAACGTTACGCC+GGG 0.588960 3_3:-56609818 Msa0459790:CDS
CTGTGGATTTGACTAAGCCC+AGG 0.590340 3_3:-56609682 Msa0459790:CDS
ACTGGATTCCGTTACCGGAG+TGG 0.592292 3_3:+56610741 None:intergenic
CTGGGCTTAGTCAAATCCAC+AGG 0.593734 3_3:+56609683 None:intergenic
CTCCGTCGCTATGCTGCGTG+TGG 0.597224 3_3:-56610372 Msa0459790:CDS
TGAATTGCATGGTGGTGGGT+GGG 0.603256 3_3:+56611861 None:intergenic
TGCAGACGGTGGAGGCGCGG+AGG 0.606407 3_3:+56610585 None:intergenic
ACTACGATCAGTTGAAGTTG+AGG 0.608135 3_3:-56609979 Msa0459790:CDS
CGCAGCGTTTCACTATGTTG+AGG 0.609814 3_3:+56610972 None:intergenic
GACTTTAGAGAGAAATTCGT+CGG 0.610883 3_3:+56611066 None:intergenic
AATATGATTGCAGTTCATGT+TGG 0.613034 3_3:-56611320 Msa0459790:intron
GCAGCAGAAGAACGTTACGC+CGG 0.618657 3_3:-56609819 Msa0459790:CDS
AGAGAATGAGGAGTTACGAT+CGG 0.618799 3_3:-56609879 Msa0459790:CDS
TTCAGCGAGGTACATGTCGA+CGG 0.620480 3_3:+56610343 None:intergenic
AGCTCGTTTCTGCCTCCACA+AGG 0.622318 3_3:-56611547 Msa0459790:intron
ATAGATCTATCTGACATACC+AGG 0.624439 3_3:-56611235 Msa0459790:CDS
AATTATCAATCTCTTCCCAT+CGG 0.625194 3_3:-56610663 Msa0459790:CDS
GCGTGTAAAACTATCTGCAC+CGG 0.627565 3_3:+56610007 None:intergenic
ACTAGTATGCAAACTTTGAG+AGG 0.629399 3_3:+56609630 None:intergenic
CCATGGAGAGAACTGGCCAA+TGG 0.634800 3_3:-56611715 Msa0459790:intron
ACAATGAATTGCATGGTGGT+GGG 0.636959 3_3:+56611857 None:intergenic
CATCACGAGGAGGTCATCGA+CGG 0.639716 3_3:+56610517 None:intergenic
CGAGAGGAATCGGTTAGCAA+CGG 0.645221 3_3:-56609918 Msa0459790:CDS
TACCTTGAGATAGATATCAA+CGG 0.648843 3_3:+56610223 None:intergenic
GGAGGTGGATTGCGCAACGG+AGG 0.652208 3_3:+56610603 None:intergenic
GCAAGACTTGAGGACTGCAA+CGG 0.653304 3_3:+56611021 None:intergenic
GAGCTAGTTCGAAACCACTC+CGG 0.654700 3_3:-56610755 Msa0459790:CDS
GATCAGTTGAAGTTGAGGAG+TGG 0.665109 3_3:-56609974 Msa0459790:CDS
CGTAGGAGAATGACATCACG+AGG 0.666273 3_3:+56610504 None:intergenic
GATGCTGAGTTCACCGTACG+CGG 0.666328 3_3:+56610316 None:intergenic
TCAGACGACGGAGAATGCGA+CGG 0.675092 3_3:-56609950 Msa0459790:CDS
AAGCGCCAAGGCTTGTAGCG+AGG 0.675562 3_3:-56610939 Msa0459790:CDS
CCATTTAGAAGATGGGCCTG+TGG 0.683204 3_3:-56609699 Msa0459790:CDS
TTGAGGAGTGGATCAGACGA+CGG 0.684167 3_3:-56609962 Msa0459790:CDS
GTGATGTCATTCTCCTACGA+CGG 0.684941 3_3:-56610500 Msa0459790:CDS
ACCTGCGAATTGGTGGACTG+AGG 0.700048 3_3:-56610897 Msa0459790:CDS
CATCGGCATAGGGAAGAAGG+TGG 0.713733 3_3:+56610996 None:intergenic
ATCGCCTGTATGAAACAGCG+CGG 0.732891 3_3:-56610836 Msa0459790:CDS
TAGCTGGACAATGAATTGCA+TGG 0.734784 3_3:+56611850 None:intergenic
CTCTGAATATGTAATCAGCG+CGG 0.746240 3_3:+56610790 None:intergenic
AGGAGAATGACATCACGAGG+AGG 0.751905 3_3:+56610507 None:intergenic
GATCTATCTGACATACCAGG+AGG 0.759206 3_3:-56611232 Msa0459790:CDS
TGAGATAGATATCAACGGCG+CGG 0.763641 3_3:+56610228 None:intergenic
CGTACGCGGCGATTTCAGCG+AGG 0.778421 3_3:+56610330 None:intergenic
CTGGACAATGAATTGCATGG+TGG 0.791704 3_3:+56611853 None:intergenic
CCAACCATAGAAGTTCATGG+CGG 0.819770 3_3:-56611762 Msa0459790:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACATTTTTATATATGTAT+CGG - chr3_3:56611919-56611938 Msa0459790:five_prime_UTR 10.0%
!!! AATAAACTAACTAGTTTAAA+CGG + chr3_3:56611182-56611201 None:intergenic 15.0%
!!! GTTAATATATAAGGACATTT+TGG + chr3_3:56609444-56609463 None:intergenic 20.0%
!! TCAAAGTACAAAATAGAAAA+TGG + chr3_3:56609697-56609716 None:intergenic 20.0%
!! ATGAACAATATAATTCACAT+GGG + chr3_3:56609817-56609836 None:intergenic 20.0%
!! TATGAACAATATAATTCACA+TGG + chr3_3:56609818-56609837 None:intergenic 20.0%
!! ATTAAACATTACACAATCAA+AGG + chr3_3:56611885-56611904 None:intergenic 20.0%
!!! TTTTATATATGTATCGGTAT+CGG - chr3_3:56611925-56611944 Msa0459790:five_prime_UTR 20.0%
!! TTTCTTAACTATTTAGTCTA+GGG + chr3_3:56611963-56611982 None:intergenic 20.0%
!! ATTTCTTAACTATTTAGTCT+AGG + chr3_3:56611964-56611983 None:intergenic 20.0%
! TGTACTTTGATTATTATTCC+AGG - chr3_3:56609707-56609726 Msa0459790:CDS 25.0%
! GTACTTTGATTATTATTCCA+GGG - chr3_3:56609708-56609727 Msa0459790:CDS 25.0%
! CTACATCAGAAAACTAATAA+TGG - chr3_3:56610040-56610059 Msa0459790:CDS 25.0%
!! GATTGATAATTGATTCTAGA+AGG + chr3_3:56610652-56610671 None:intergenic 25.0%
!!! ACTAGTTAGTTTATTTTTGC+AGG - chr3_3:56611187-56611206 Msa0459790:CDS 25.0%
! GAAGATGAAAATGTACATTA+CGG - chr3_3:56611475-56611494 Msa0459790:intron 25.0%
!! TGCAGATTTTATATAGATCA+TGG - chr3_3:56611799-56611818 Msa0459790:five_prime_UTR 25.0%
AACATTGAACTTTGTGTTTG+TGG + chr3_3:56609364-56609383 None:intergenic 30.0%
AAATTTATGACTGAGTTAGC+TGG + chr3_3:56609493-56609512 None:intergenic 30.0%
ACTTCAACTATAACATCAGT+TGG + chr3_3:56609751-56609770 None:intergenic 30.0%
ACTGATGTTATAGTTGAAGT+AGG - chr3_3:56609751-56609770 Msa0459790:CDS 30.0%
!!! AATTCACATGGGTCATTTTT+TGG + chr3_3:56609806-56609825 None:intergenic 30.0%
GTGATCACATTTATTGATGT+TGG + chr3_3:56609907-56609926 None:intergenic 30.0%
ATAAATGTGATCACATGTGT+CGG - chr3_3:56609913-56609932 Msa0459790:CDS 30.0%
AATATGATTGCAGTTCATGT+TGG - chr3_3:56610004-56610023 Msa0459790:CDS 30.0%
AAAGCAGCTAAATTCTGTTA+CGG - chr3_3:56610131-56610150 Msa0459790:intron 30.0%
AATTATCAATCTCTTCCCAT+CGG - chr3_3:56610661-56610680 Msa0459790:CDS 30.0%
TACCTTGAGATAGATATCAA+CGG + chr3_3:56611104-56611123 None:intergenic 30.0%
! AGAAAAAGTATGCAGCATAA+TGG - chr3_3:56611238-56611257 Msa0459790:CDS 30.0%
TGGGAAAGTTGTTCAAAAAT+GGG - chr3_3:56611588-56611607 Msa0459790:CDS 30.0%
!!! CTTTATGCTTGGTTTTGTTT+GGG - chr3_3:56611719-56611738 Msa0459790:CDS 30.0%
ATGGTTTATGACAATGTTTG+TGG - chr3_3:56611818-56611837 Msa0459790:five_prime_UTR 30.0%
!!! TGAACTTCTATGGTTGGTTT+TGG + chr3_3:56609559-56609578 None:intergenic 35.0%
AAACCAACCATAGAAGTTCA+TGG - chr3_3:56609559-56609578 Msa0459790:three_prime_UTR 35.0%
ATGGCAAGAGAAAGTCTATT+AGG + chr3_3:56609593-56609612 None:intergenic 35.0%
TAATAGACTTTCTCTTGCCA+TGG - chr3_3:56609592-56609611 Msa0459790:three_prime_UTR 35.0%
TTTAGTGTGTTGTGTACCAT+TGG + chr3_3:56609628-56609647 None:intergenic 35.0%
TGCATGCATGGATTTGAAAA+TGG + chr3_3:56609658-56609677 None:intergenic 35.0%
!!! ATTTTTTGGATACCTTGTGG+AGG + chr3_3:56609792-56609811 None:intergenic 35.0%
!!! GTCATTTTTTGGATACCTTG+TGG + chr3_3:56609795-56609814 None:intergenic 35.0%
ATAGATCTATCTGACATACC+AGG - chr3_3:56610089-56610108 Msa0459790:CDS 35.0%
ATCGTAAAACTGCGACATTA+TGG + chr3_3:56610178-56610197 None:intergenic 35.0%
CACAATACTGATCTGTCATT+TGG + chr3_3:56610217-56610236 None:intergenic 35.0%
! GACTTTAGAGAGAAATTCGT+CGG + chr3_3:56610261-56610280 None:intergenic 35.0%
TTTCACTATGTTGAGGTCAT+CGG + chr3_3:56610348-56610367 None:intergenic 35.0%
ATTCACTGTAATCTGATGAC+TGG + chr3_3:56610604-56610623 None:intergenic 35.0%
! AATGATTCTTTGAGTTCTCC+CGG + chr3_3:56610932-56610951 None:intergenic 35.0%
CTCAGCATCTCAAAATTCAA+CGG - chr3_3:56611022-56611041 Msa0459790:CDS 35.0%
! CTTTCGATTTCATCTAGCTT+TGG + chr3_3:56611218-56611237 None:intergenic 35.0%
CTGGGAAAGTTGTTCAAAAA+TGG - chr3_3:56611587-56611606 Msa0459790:CDS 35.0%
GGGAAAGTTGTTCAAAAATG+GGG - chr3_3:56611589-56611608 Msa0459790:CDS 35.0%
ACTAGTATGCAAACTTTGAG+AGG + chr3_3:56611697-56611716 None:intergenic 35.0%
! CATACTAGTTGCTTTATGCT+TGG - chr3_3:56611708-56611727 Msa0459790:intron 35.0%
!!! GCTTTATGCTTGGTTTTGTT+TGG - chr3_3:56611718-56611737 Msa0459790:CDS 35.0%
TTAGTCTAGGGATCAATACA+TGG + chr3_3:56611951-56611970 None:intergenic 35.0%
!! GGTGGGTGGGTTAATATATA+AGG + chr3_3:56609453-56609472 None:intergenic 40.0%
ACAATGAATTGCATGGTGGT+GGG + chr3_3:56609470-56609489 None:intergenic 40.0%
TAGCTGGACAATGAATTGCA+TGG + chr3_3:56609477-56609496 None:intergenic 40.0%
!!! TTGGTTTTGGTATGTGGACT+TGG + chr3_3:56609546-56609565 None:intergenic 40.0%
!!! CTATGGTTGGTTTTGGTATG+TGG + chr3_3:56609552-56609571 None:intergenic 40.0%
AACTTCTTGAGAGAAAACCC+TGG + chr3_3:56609728-56609747 None:intergenic 40.0%
ATGATTGCAGTTCATGTTGG+TGG - chr3_3:56610007-56610026 Msa0459790:CDS 40.0%
TATTGTGACAACAACCTTGC+TGG - chr3_3:56610230-56610249 Msa0459790:CDS 40.0%
CTCTGAATATGTAATCAGCG+CGG + chr3_3:56610537-56610556 None:intergenic 40.0%
TGAGATTCGTTTCTCGAGTT+CGG + chr3_3:56610768-56610787 None:intergenic 40.0%
CATCTCAGGATTCGTTGAAA+AGG - chr3_3:56610883-56610902 Msa0459790:CDS 40.0%
TGAAAAGGAGAAAAACGCAG+CGG - chr3_3:56610898-56610917 Msa0459790:CDS 40.0%
GCTTCGTAGGATAGTTTCAA+TGG + chr3_3:56611266-56611285 None:intergenic 40.0%
ACTACGATCAGTTGAAGTTG+AGG - chr3_3:56611345-56611364 Msa0459790:intron 40.0%
AGAGAATGAGGAGTTACGAT+CGG - chr3_3:56611445-56611464 Msa0459790:intron 40.0%
TTCTTCCGTGTCGAAAAAAC+TGG - chr3_3:56611568-56611587 Msa0459790:CDS 40.0%
TCTTCCGTGTCGAAAAAACT+GGG - chr3_3:56611569-56611588 Msa0459790:CDS 40.0%
!!! CTTTCCCAGTTTTTTCGACA+CGG + chr3_3:56611576-56611595 None:intergenic 40.0%
GTTGTTCAAAAATGGGGCTA+AGG - chr3_3:56611595-56611614 Msa0459790:CDS 40.0%
CAAAAATGGGGCTAAGGATA+CGG - chr3_3:56611601-56611620 Msa0459790:intron 40.0%
ATACGGCCCATTTAGAAGAT+GGG - chr3_3:56611618-56611637 Msa0459790:intron 40.0%
ATAGAGAACCTTCTTCTCCT+GGG + chr3_3:56611662-56611681 None:intergenic 40.0%
AATAGAGAACCTTCTTCTCC+TGG + chr3_3:56611663-56611682 None:intergenic 40.0%
!!! TATGCTTGGTTTTGTTTGGG+TGG - chr3_3:56611722-56611741 Msa0459790:CDS 40.0%
!!! ATGCTTGGTTTTGTTTGGGT+GGG - chr3_3:56611723-56611742 Msa0459790:CDS 40.0%
GACAATGAATTGCATGGTGG+TGG + chr3_3:56609471-56609490 None:intergenic 45.0%
CTGGACAATGAATTGCATGG+TGG + chr3_3:56609474-56609493 None:intergenic 45.0%
CCAACCATAGAAGTTCATGG+CGG - chr3_3:56609562-56609581 Msa0459790:three_prime_UTR 45.0%
TTAGCCGCCATGAACTTCTA+TGG + chr3_3:56609569-56609588 None:intergenic 45.0%
GCATGTGTATGATGCATGCA+TGG + chr3_3:56609670-56609689 None:intergenic 45.0%
GATCTATCTGACATACCAGG+AGG - chr3_3:56610092-56610111 Msa0459790:CDS 45.0%
! GCTGCTTTCTCAAAGATTCC+AGG + chr3_3:56610119-56610138 None:intergenic 45.0%
TAGAGAGAAATTCGTCGGTC+CGG + chr3_3:56610256-56610275 None:intergenic 45.0%
ATGTTGAGGTCATCGGCATA+GGG + chr3_3:56610341-56610360 None:intergenic 45.0%
TATGTTGAGGTCATCGGCAT+AGG + chr3_3:56610342-56610361 None:intergenic 45.0%
ATATTCAGAGCGATCACTCC+AGG - chr3_3:56610547-56610566 Msa0459790:CDS 45.0%
TGATGACTGGATTCCGTTAC+CGG + chr3_3:56610591-56610610 None:intergenic 45.0%
! GAAAAGCTGCTTTCTCCGAT+GGG + chr3_3:56610679-56610698 None:intergenic 45.0%
GTGATGTCATTCTCCTACGA+CGG - chr3_3:56610824-56610843 Msa0459790:CDS 45.0%
! TCGATTTTACGCGCGTGTTT+AGG + chr3_3:56611064-56611083 None:intergenic 45.0%
TGAGATAGATATCAACGGCG+CGG + chr3_3:56611099-56611118 None:intergenic 45.0%
CGCCGTTGATATCTATCTCA+AGG - chr3_3:56611099-56611118 Msa0459790:CDS 45.0%
TTCACGCGTCACAGAACAAA+CGG - chr3_3:56611291-56611310 Msa0459790:CDS 45.0%
GTCACAGAACAAACGGTTAC+CGG - chr3_3:56611298-56611317 Msa0459790:CDS 45.0%
GCGTGTAAAACTATCTGCAC+CGG + chr3_3:56611320-56611339 None:intergenic 45.0%
GATCAGTTGAAGTTGAGGAG+TGG - chr3_3:56611350-56611369 Msa0459790:intron 45.0%
GATACGGCCCATTTAGAAGA+TGG - chr3_3:56611617-56611636 Msa0459790:intron 45.0%
CACAGGCCCATCTTCTAAAT+GGG + chr3_3:56611627-56611646 None:intergenic 45.0%
!!! TGCTTGGTTTTGTTTGGGTG+GGG - chr3_3:56611724-56611743 Msa0459790:CDS 45.0%
!! TGAATTGCATGGTGGTGGGT+GGG + chr3_3:56609466-56609485 None:intergenic 50.0%
!! ATGAATTGCATGGTGGTGGG+TGG + chr3_3:56609467-56609486 None:intergenic 50.0%
CCGCCATGAACTTCTATGGT+TGG + chr3_3:56609565-56609584 None:intergenic 50.0%
TCTCTTGCCATGGAGAGAAC+TGG - chr3_3:56609602-56609621 Msa0459790:three_prime_UTR 50.0%
TCAAAGATTCCAGGACCTCC+TGG + chr3_3:56610110-56610129 None:intergenic 50.0%
CGGCGTCAACTTCGAGATAA+CGG - chr3_3:56610151-56610170 Msa0459790:intron 50.0%
GCAAGACTTGAGGACTGCAA+CGG + chr3_3:56610306-56610325 None:intergenic 50.0%
CGCAGCGTTTCACTATGTTG+AGG + chr3_3:56610355-56610374 None:intergenic 50.0%
AATTCGCAGGTGAACGGCTA+GGG + chr3_3:56610418-56610437 None:intergenic 50.0%
TCCACCAATTCGCAGGTGAA+CGG + chr3_3:56610424-56610443 None:intergenic 50.0%
ATCGCCTGTATGAAACAGCG+CGG - chr3_3:56610488-56610507 Msa0459790:CDS 50.0%
AGTGGTTTCGAACTAGCTCC+TGG + chr3_3:56610568-56610587 None:intergenic 50.0%
GAGCTAGTTCGAAACCACTC+CGG - chr3_3:56610569-56610588 Msa0459790:CDS 50.0%
GTTCGAAACCACTCCGGTAA+CGG - chr3_3:56610575-56610594 Msa0459790:CDS 50.0%
! GGAAAAGCTGCTTTCTCCGA+TGG + chr3_3:56610680-56610699 None:intergenic 50.0%
! AGGCAGCAGAGGAAGTTGAT+CGG + chr3_3:56610701-56610720 None:intergenic 50.0%
! CTCGAGTTCGGTTTTGCAGA+CGG + chr3_3:56610756-56610775 None:intergenic 50.0%
CATCGACGGTTACGTGTTCA+AGG + chr3_3:56610796-56610815 None:intergenic 50.0%
AGGAGAATGACATCACGAGG+AGG + chr3_3:56610820-56610839 None:intergenic 50.0%
CGTAGGAGAATGACATCACG+AGG + chr3_3:56610823-56610842 None:intergenic 50.0%
! AAACGCAGCGGTTTTCACTC+CGG - chr3_3:56610910-56610929 Msa0459790:CDS 50.0%
TTCAGCGAGGTACATGTCGA+CGG + chr3_3:56610984-56611003 None:intergenic 50.0%
TTGAGGAGTGGATCAGACGA+CGG - chr3_3:56611362-56611381 Msa0459790:intron 50.0%
CGAGAGGAATCGGTTAGCAA+CGG - chr3_3:56611406-56611425 Msa0459790:intron 50.0%
GTTAGCAACGGATGTGTCGT+TGG - chr3_3:56611418-56611437 Msa0459790:intron 50.0%
! GTCGTTGGTGAGAGAGAATG+AGG - chr3_3:56611433-56611452 Msa0459790:intron 50.0%
CCACAGGCCCATCTTCTAAA+TGG + chr3_3:56611628-56611647 None:intergenic 50.0%
CCATTTAGAAGATGGGCCTG+TGG - chr3_3:56611625-56611644 Msa0459790:intron 50.0%
CTGGGCTTAGTCAAATCCAC+AGG + chr3_3:56611644-56611663 None:intergenic 50.0%
CTGTGGATTTGACTAAGCCC+AGG - chr3_3:56611642-56611661 Msa0459790:intron 50.0%
TGACTAAGCCCAGGAGAAGA+AGG - chr3_3:56611651-56611670 Msa0459790:intron 50.0%
CCATTGGCCAGTTCTCTCCA+TGG + chr3_3:56609612-56609631 None:intergenic 55.0%
CCATGGAGAGAACTGGCCAA+TGG - chr3_3:56609609-56609628 Msa0459790:three_prime_UTR 55.0%
AGCTCGTTTCTGCCTCCACA+AGG - chr3_3:56609777-56609796 Msa0459790:CDS 55.0%
GACAAGCCTTCGATCACAGG+CGG + chr3_3:56609861-56609880 None:intergenic 55.0%
CCAGACAAGCCTTCGATCAC+AGG + chr3_3:56609864-56609883 None:intergenic 55.0%
CCTGTGATCGAAGGCTTGTC+TGG - chr3_3:56609861-56609880 Msa0459790:CDS 55.0%
TCTGACATACCAGGAGGTCC+TGG - chr3_3:56610098-56610117 Msa0459790:CDS 55.0%
GTGACAACAACCTTGCTGGC+CGG - chr3_3:56610234-56610253 Msa0459790:CDS 55.0%
GTCGCCTTCTTCACTCTCAC+TGG - chr3_3:56610278-56610297 Msa0459790:CDS 55.0%
GGAGCCAGTGAGAGTGAAGA+AGG + chr3_3:56610285-56610304 None:intergenic 55.0%
! GAAGGTGGTGGCAAGACTTG+AGG + chr3_3:56610316-56610335 None:intergenic 55.0%
CATCGGCATAGGGAAGAAGG+TGG + chr3_3:56610331-56610350 None:intergenic 55.0%
GGTCATCGGCATAGGGAAGA+AGG + chr3_3:56610334-56610353 None:intergenic 55.0%
ATTCGCCTCGCTACAAGCCT+TGG + chr3_3:56610393-56610412 None:intergenic 55.0%
CAATTCGCAGGTGAACGGCT+AGG + chr3_3:56610419-56610438 None:intergenic 55.0%
CTAGCCGTTCACCTGCGAAT+TGG - chr3_3:56610417-56610436 Msa0459790:CDS 55.0%
!! ACCTGCGAATTGGTGGACTG+AGG - chr3_3:56610427-56610446 Msa0459790:CDS 55.0%
TCCTCAGTCCACCAATTCGC+AGG + chr3_3:56610431-56610450 None:intergenic 55.0%
TGTAATCAGCGCGGCTGCAA+TGG + chr3_3:56610528-56610547 None:intergenic 55.0%
ACTGGATTCCGTTACCGGAG+TGG + chr3_3:56610586-56610605 None:intergenic 55.0%
! TTCGGTTTTGCAGACGGTGG+AGG + chr3_3:56610750-56610769 None:intergenic 55.0%
! GAGTTCGGTTTTGCAGACGG+TGG + chr3_3:56610753-56610772 None:intergenic 55.0%
CATCACGAGGAGGTCATCGA+CGG + chr3_3:56610810-56610829 None:intergenic 55.0%
GAAGAGTTTCTCGCCGTCGT+AGG + chr3_3:56610840-56610859 None:intergenic 55.0%
AGCGTTCGCAGAGTCATCTC+AGG - chr3_3:56610869-56610888 Msa0459790:CDS 55.0%
! AACGCAGCGGTTTTCACTCC+GGG - chr3_3:56610911-56610930 Msa0459790:CDS 55.0%
GATGCTGAGTTCACCGTACG+CGG + chr3_3:56611011-56611030 None:intergenic 55.0%
TCAGACGACGGAGAATGCGA+CGG - chr3_3:56611374-56611393 Msa0459790:intron 55.0%
GCAGCAGAAGAACGTTACGC+CGG - chr3_3:56611505-56611524 Msa0459790:intron 55.0%
CAGCAGAAGAACGTTACGCC+GGG - chr3_3:56611506-56611525 Msa0459790:intron 55.0%
GAACTCAACGACGTCGTTCC+CGG + chr3_3:56611527-56611546 None:intergenic 55.0%
CGGCATAGGGAAGAAGGTGG+TGG + chr3_3:56610328-56610347 None:intergenic 60.0%
CGTTGAAGCTGCAAGCGCCA+AGG - chr3_3:56610373-56610392 Msa0459790:CDS 60.0%
AAGCGCCAAGGCTTGTAGCG+AGG - chr3_3:56610385-56610404 Msa0459790:CDS 60.0%
GCCGTTCACCTGCGAATTGG+TGG - chr3_3:56610420-56610439 Msa0459790:CDS 60.0%
! AGCGCCGCGCTGTTTCATAC+AGG + chr3_3:56610495-56610514 None:intergenic 60.0%
ATCAGCGCGGCTGCAATGGT+TGG + chr3_3:56610524-56610543 None:intergenic 60.0%
! TTTTGCAGACGGTGGAGGCG+CGG + chr3_3:56610745-56610764 None:intergenic 60.0%
CTCGCTGAAATCGCCGCGTA+CGG - chr3_3:56610995-56611014 Msa0459790:CDS 60.0%
GAGCTGCGAGCGAGAGGAAT+CGG - chr3_3:56611396-56611415 Msa0459790:intron 60.0%
CTTGCGCCGCCTGTGATCGA+AGG - chr3_3:56609852-56609871 Msa0459790:CDS 65.0%
ATTCGTCGGTCCGGCCAGCA+AGG + chr3_3:56610247-56610266 None:intergenic 65.0%
AGCGCGGCTGCAATGGTTGG+AGG + chr3_3:56610521-56610540 None:intergenic 65.0%
!! GGTGGATTGCGCAACGGAGG+AGG + chr3_3:56610721-56610740 None:intergenic 65.0%
!! GGAGGTGGATTGCGCAACGG+AGG + chr3_3:56610724-56610743 None:intergenic 65.0%
!! CGCGGAGGTGGATTGCGCAA+CGG + chr3_3:56610727-56610746 None:intergenic 65.0%
CTCCGTCGCTATGCTGCGTG+TGG - chr3_3:56610952-56610971 Msa0459790:CDS 65.0%
CGCCACACGCAGCATAGCGA+CGG + chr3_3:56610957-56610976 None:intergenic 65.0%
CGTACGCGGCGATTTCAGCG+AGG + chr3_3:56610997-56611016 None:intergenic 65.0%
CGCGTGAACACGCGCTTCGT+AGG + chr3_3:56611279-56611298 None:intergenic 65.0%
CGCAACGGAGGAGGCAGCAG+AGG + chr3_3:56610712-56610731 None:intergenic 70.0%
! AGACGGTGGAGGCGCGGAGG+TGG + chr3_3:56610739-56610758 None:intergenic 75.0%
! TGCAGACGGTGGAGGCGCGG+AGG + chr3_3:56610742-56610761 None:intergenic 75.0%
GCGACGGAGCTGCGAGCGAG+AGG - chr3_3:56611390-56611409 Msa0459790:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 56609348 56611998 56609348 ID=Msa0459790;Name=Msa0459790
chr3_3 mRNA 56609348 56611998 56609348 ID=Msa0459790-mRNA-1;Parent=Msa0459790;Name=Msa0459790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=230|1|1|1|1|1|4|310|568
chr3_3 exon 56609348 56610137 56609348 ID=Msa0459790-mRNA-1:exon:11365;Parent=Msa0459790-mRNA-1
chr3_3 exon 56610226 56611329 56610226 ID=Msa0459790-mRNA-1:exon:11364;Parent=Msa0459790-mRNA-1
chr3_3 exon 56611548 56611617 56611548 ID=Msa0459790-mRNA-1:exon:11363;Parent=Msa0459790-mRNA-1
chr3_3 exon 56611716 56611998 56611716 ID=Msa0459790-mRNA-1:exon:11362;Parent=Msa0459790-mRNA-1
chr3_3 five_prime_UTR 56611769 56611998 56611769 ID=Msa0459790-mRNA-1:five_prime_utr;Parent=Msa0459790-mRNA-1
chr3_3 CDS 56611716 56611768 56611716 ID=Msa0459790-mRNA-1:cds;Parent=Msa0459790-mRNA-1
chr3_3 CDS 56611548 56611617 56611548 ID=Msa0459790-mRNA-1:cds;Parent=Msa0459790-mRNA-1
chr3_3 CDS 56610226 56611329 56610226 ID=Msa0459790-mRNA-1:cds;Parent=Msa0459790-mRNA-1
chr3_3 CDS 56609658 56610137 56609658 ID=Msa0459790-mRNA-1:cds;Parent=Msa0459790-mRNA-1
chr3_3 three_prime_UTR 56609348 56609657 56609348 ID=Msa0459790-mRNA-1:three_prime_utr;Parent=Msa0459790-mRNA-1
Gene Sequence

>Msa0459790

ATGGCGGCTAATCCTAATAGACTTTCTCTTGCCATGGAGAGAACTGGCCAATGGGTTTTCTCTCAAGAAGTTCCAACTGATGTTATAGTTGAAGTAGGAGAAGCTCGTTTCTGCCTCCACAAGTTCATGTTGGTGGCAAAGAGCAACTACATCAGAAAACTAATAATGGAATCAGATGAGACTCATCTCACAAGAATAGATCTATCTGACATACCAGGAGGTCCTGGAATCTTTGAGAAAGCAGCTAAATTCTGTTACGGCGTCAACTTCGAGATAACGGTCCATAATGTCGCAGTTTTACGATGTGCAGCAGAGTTTCTCCAAATGACAGATCAGTATTGTGACAACAACCTTGCTGGCCGGACCGACGAATTTCTCTCTAAAGTCGCCTTCTTCACTCTCACTGGCTCCGTTGCAGTCCTCAAGTCTTGCCACCACCTTCTTCCCTATGCCGATGACCTCAACATAGTGAAACGCTGCGTTGAAGCTGCAAGCGCCAAGGCTTGTAGCGAGGCGAATTTCCCTAGCCGTTCACCTGCGAATTGGTGGACTGAGGAACTAGCTGTTCTTGATATTGATTTCTTCAGTAGAGTGATCGCCTGTATGAAACAGCGCGGCGCTAAGCCTCCAACCATTGCAGCCGCGCTGATTACATATTCAGAGCGATCACTCCAGGAGCTAGTTCGAAACCACTCCGGTAACGGAATCCAGTCATCAGATTACAGTGAATCAGACATTAGATCAAAACAAAGAAGCCTTCTAGAATCAATTATCAATCTCTTCCCATCGGAGAAAGCAGCTTTTCCGATCAACTTCCTCTGCTGCCTCCTCCGTTGCGCAATCCACCTCCGCGCCTCCACCGTCTGCAAAACCGAACTCGAGAAACGAATCTCAGCAATCCTTGAACACGTAACCGTCGATGACCTCCTCGTGATGTCATTCTCCTACGACGGCGAGAAACTCTTCGATCTAGAAAGCGTTCGCAGAGTCATCTCAGGATTCGTTGAAAAGGAGAAAAACGCAGCGGTTTTCACTCCGGGAGAACTCAAAGAATCATTCTCCGTCGCTATGCTGCGTGTGGCGAAAACCGTCGACATGTACCTCGCTGAAATCGCCGCGTACGGTGAACTCAGCATCTCAAAATTCAACGGAATCGCTGTTCTTATTCCTAAACACGCGCGTAAAATCGACGATGATCTTTACCGCGCCGTTGATATCTATCTCAAGGTTCATCCAAAGCTAGATGAAATCGAAAGAGAAAAAGTATGCAGCATAATGGATCCATTGAAACTATCCTACGAAGCGCGTGTTCACGCGTCACAGAACAAACGGTTACCGGTGCAGATAGTTTTACACGCGCTATACTACGATCAGTTGAAGTTGAGGAGTGGATCAGACGACGGAGAATGCGACGGAGCTGCGAGCGAGAGGAATCGGTTAGCAACGGATGTGTCGTTGGTGAGAGAGAATGAGGAGTTACGATCGGAATTGACGAAGATGAAAATGTACATTACGGATATGCAGCAGCAGAAGAACGTTACGCCGGGAACGACGTCGTTGAGTTCGAGTAAGAAGACGACGTTTTTTTCTTCCGTGTCGAAAAAACTGGGAAAGTTGTTCAAAAATGGGGCTAAGGATACGGCCCATTTAGAAGATGGGCCTGTGGATTTGACTAAGCCCAGGAGAAGAAGGTTCTCTATTTCTTAA
Protein sequence

>Msa0459790

MAANPNRLSLAMERTGQWVFSQEVPTDVIVEVGEARFCLHKFMLVAKSNYIRKLIMESDETHLTRIDLSDIPGGPGIFEKAAKFCYGVNFEITVHNVAVLRCAAEFLQMTDQYCDNNLAGRTDEFLSKVAFFTLTGSVAVLKSCHHLLPYADDLNIVKRCVEAASAKACSEANFPSRSPANWWTEELAVLDIDFFSRVIACMKQRGAKPPTIAAALITYSERSLQELVRNHSGNGIQSSDYSESDIRSKQRSLLESIINLFPSEKAAFPINFLCCLLRCAIHLRASTVCKTELEKRISAILEHVTVDDLLVMSFSYDGEKLFDLESVRRVISGFVEKEKNAAVFTPGELKESFSVAMLRVAKTVDMYLAEIAAYGELSISKFNGIAVLIPKHARKIDDDLYRAVDIYLKVHPKLDEIEREKVCSIMDPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGSDDGECDGAASERNRLATDVSLVRENEELRSELTKMKMYITDMQQQKNVTPGTTSLSSSKKTTFFSSVSKKLGKLFKNGAKDTAHLEDGPVDLTKPRRRRFSIS*