AlfalfaGEDB | Msa1037570

M. sativa cultivar zhongmu-4 / Msa1037570

KEGG: -
GO: -
PFAM: PF05922.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037570	XP_003626594.2	96.475	766	26	1	22	787	1	765	0.0	1530

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037570	sp\|O82777\|SBT3_SOLLC	48.303	766	370	12	28	780	5	757	0.0	689

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037570	A0A396HAM7	96.475	766	26	1	22	787	1	765	0.0	1530

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1037570	0.850784	1.357437e-60	-8.615850e-47
Msa0001040	Msa1037570	0.826266	2.980438e-54	-8.615850e-47
Msa0001510	Msa1037570	0.833097	6.484053e-56	-8.615850e-47
Msa0002690	Msa1037570	0.873755	1.149943e-67	-8.615850e-47
Msa0002700	Msa1037570	0.880640	4.645590e-70	-8.615850e-47
Msa0003370	Msa1037570	0.833006	6.831177e-56	-8.615850e-47
Msa0004180	Msa1037570	0.836950	6.929696e-57	-8.615850e-47
Msa0005500	Msa1037570	0.851051	1.141129e-60	-8.615850e-47
Msa0006580	Msa1037570	0.806076	9.802688e-50	-8.615850e-47
Msa0007570	Msa1037570	0.805642	1.209570e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1037570	MtrunA17_Chr7g0276151	96.475	766	26	1	22	787	1	765	1530
Msa1037570	MtrunA17_Chr8g0345971	65.059	767	254	8	22	780	1	761	1010
Msa1037570	MtrunA17_Chr1g0189251	65.576	764	250	10	22	780	1	756	1008
Msa1037570	MtrunA17_Chr8g0345991	63.554	771	262	12	22	784	1	760	956
Msa1037570	MtrunA17_Chr8g0345981	63.001	773	267	12	22	784	1	764	943
Msa1037570	MtrunA17_Chr2g0303881	65.176	738	235	12	59	784	5	732	917
Msa1037570	MtrunA17_Chr8g0345961	61.026	780	270	13	22	784	1	763	889
Msa1037570	MtrunA17_Chr7g0248871	49.868	760	362	10	32	777	9	763	734
Msa1037570	MtrunA17_Chr1g0189561	50.394	762	351	14	29	777	13	760	718
Msa1037570	MtrunA17_Chr7g0248861	49.164	598	288	9	50	633	27	622	567

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1037570	AT5G67090.1	45.632	767	361	13	35	783	7	735	0.0	644
Msa1037570	AT2G05920.1	41.944	751	381	17	53	778	30	750	0.0	555
Msa1037570	AT5G67360.1	41.548	775	398	19	29	778	11	755	0.0	545
Msa1037570	AT1G04110.1	39.848	788	413	19	30	778	6	771	1.19e-178	532
Msa1037570	AT4G34980.1	39.974	783	411	19	30	782	10	763	8.73e-177	526
Msa1037570	AT5G51750.1	38.175	778	442	15	29	780	13	777	5.52e-170	509
Msa1037570	AT3G14240.1	39.370	762	407	17	53	778	28	770	2.78e-166	500
Msa1037570	AT3G14067.1	37.724	782	430	20	30	777	9	767	7.76e-166	499
Msa1037570	AT1G01900.1	40.690	725	398	13	77	778	57	772	4.16e-162	489
Msa1037570	AT2G04160.1	40.251	718	364	19	101	777	77	770	4.18e-152	463

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Find 201 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGGCATACAAGTTG+AGG	0.554078	7_1:+74233713	Msa1037570:CDS
AAACACTTTAAGCTCTATGG+GGG	0.675132	7_1:-74233853	None:intergenic
AAACCAGACATCACAGCACC+AGG	0.556877	7_1:+74233061	Msa1037570:CDS
AAAGAACTCATCACAGACAT+TGG	0.579567	7_1:+74233301	Msa1037570:CDS
AACAGTAACCAATGTTGGAG+AGG	0.601299	7_1:+74233600	Msa1037570:CDS
AACAGTTGCTGCTGGCACAA+TGG	0.600200	7_1:+74232580	Msa1037570:CDS
AACTAGACATTAAAAGTGAA+AGG	0.560769	7_1:-74234035	None:intergenic
AACTCCACACGTGACATAGA+CGG	0.635875	7_1:+74231897	Msa1037570:CDS
AACTTTACTTCCAGCAGCAG+TGG	0.521509	7_1:-74231940	None:intergenic
AAGTAATGATCTGGTAATGA+CGG	0.584894	7_1:-74233953	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAAGATCCAAGAGGTAAA+AGG	-	chr7_1:74231147-74231166	None:intergenic	30.0%
AGTAATATTGTCAAGTAGTG+AGG	-	chr7_1:74231430-74231449	None:intergenic	30.0%
CTTATGGATGAAATATATCC+GGG	-	chr7_1:74231573-74231592	None:intergenic	30.0%
TATGGAAAAAACGTCATCAT+TGG	+	chr7_1:74231678-74231697	Msa1037570:CDS	30.0%
GTTTAATAGACAGTGGAATT+TGG	+	chr7_1:74231700-74231719	Msa1037570:CDS	30.0%
TTGTGCAACAAAAAACTCAT+AGG	+	chr7_1:74231816-74231835	Msa1037570:CDS	30.0%
TTCATGGTTATAGTGATGTT+AGG	-	chr7_1:74231879-74231898	None:intergenic	30.0%
CTATCTACTTCACTTTCATA+TGG	-	chr7_1:74232516-74232535	None:intergenic	30.0%
TGGAAAAGGCAATAAAAGAA+GGG	-	chr7_1:74233534-74233553	None:intergenic	30.0%
TTGGAAAAGGCAATAAAAGA+AGG	-	chr7_1:74233535-74233554	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	74230921	74234156	74230921	ID=Msa1037570;Name=Msa1037570
chr7_1	mRNA	74230921	74234156	74230921	ID=Msa1037570-mRNA-1;Parent=Msa1037570;Name=Msa1037570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=274\|1\|1\|1\|1\|1\|3\|295\|787
chr7_1	exon	74230921	74232005	74230921	ID=Msa1037570-mRNA-1:exon:18608;Parent=Msa1037570-mRNA-1
chr7_1	exon	74232149	74232414	74232149	ID=Msa1037570-mRNA-1:exon:18609;Parent=Msa1037570-mRNA-1
chr7_1	exon	74232575	74234156	74232575	ID=Msa1037570-mRNA-1:exon:18610;Parent=Msa1037570-mRNA-1
chr7_1	five_prime_UTR	74230921	74231194	74230921	ID=Msa1037570-mRNA-1:five_prime_utr;Parent=Msa1037570-mRNA-1
chr7_1	CDS	74231195	74232005	74231195	ID=Msa1037570-mRNA-1:cds;Parent=Msa1037570-mRNA-1
chr7_1	CDS	74232149	74232414	74232149	ID=Msa1037570-mRNA-1:cds;Parent=Msa1037570-mRNA-1
chr7_1	CDS	74232575	74233861	74232575	ID=Msa1037570-mRNA-1:cds;Parent=Msa1037570-mRNA-1
chr7_1	three_prime_UTR	74233862	74234156	74233862	ID=Msa1037570-mRNA-1:three_prime_utr;Parent=Msa1037570-mRNA-1

Gene Sequence

>Msa1037570

ATGGTTTCAACACTTTGCTTGTGCACTAAAGCCATACCAAATATTGATCATCTATACTCCACCATGGCTTCACATATTCATCACTATCTACTATTATCCTTTATCATAATCCTTCACCTCTTTTCATCTACATTGTGTGATCAAAACTCCAACAACTATATTATTCACATGAACTTATCAGCCATGCCCAAACCCTTCTCAAGTCAACAAAGTTGGTACTTAGCCACCCTTTCCTCACTACTTGACAATATTACTTCTAACAACGACCAGTTGAACCATATTTTTTCTTCAAAACTCACATATACCTACACTAATGTCATGAATGGTTTCAGTGCAAGTTTGTCTCCTTTAGAGCTTGAAGCTCTGAAAACCATTCCCGGATATATTTCATCCATAAGAGATTTACCTATCAAACCAGACACAACACACTCACCTCACTTCATTGGCCTCAATCCTATTTTCGGAACATGGCCTTCAACACAATATGGAAAAAACGTCATCATTGGTTTAATAGACAGTGGAATTTGGCCAGAAAGTGAAAGCTTCAAAGATGATGAGATGCCTAATATCCCTTCAAGATGGAAAGGCAAGTGTGAAAATGGTACTCAATTTGATCCGTCATTGTGCAACAAAAAACTCATAGGAGCTCGATTCTTTAACAAAGGATTACTAGCAAATAATCCTAACATCACTATAACCATGAACTCCACACGTGACATAGACGGTCATGGTACTCACACTACAACCACTGCTGCTGGAAGTAAAGTTGAGGGTGCATCCTACTTCGGCTATGCCTCTGGATCAGCCATAGGCATGGCTCCACATGCTCATGTATCCATGTACAAGGTGTTGTGGAAAGAAGGAGCATATGCATCTGATACAATAGCTGCAATTGATAGTGCAATATCAGATGGTGTAGATGTTCTTTCATTATCATTGGGTTTTGACGAGGCACCTTTGTATGAAGACCCTGTAGCTATAGCCACATTTGCAGCCATGGAGAAAAACATTTTTGTGTCTACATCTGCAGGGAACAGAGGACCAGTGCTTGAAACTCTCCACAATGGAACACCATGGGTAATAACAGTTGCTGCTGGCACAATGGATCGTGAATTTCATGGGGATTTAACACTTGGAAATGGAGCCAAAGTCACTGGTTTGTCTCTCTATCCGGGGAACTTTTCTTCAGGCAAGGTCCCAATGGTTTTCCTGAGCTCATGTGATAATTTGAAAGAACTCATCAGAGCGAGAAACAAGATCGTGGTGTGTGAAGACAAGAACCGAACACTTGCTACTCAAGTGGATAACTTGGACAGAATAAAAGTTGTTGCGGGTGTTTTCATATCAAATAGTTCTGAGGATATAACATATTACATTCAAACTAAGTTTCCATCTATTTTTTTGAATCCAATTAATGGAGAACTTATCAAGGATTTCATCAAGTGCAACACTAATCCAAAAGCAAGCATGACATTTAATAAAACTGTTTTAGGTACAAAACCAGCACCAAGTGTGGATAGTTATAGCTCAAGAGGACCATCACATAGTTGTCCATTTGTATTGAAACCAGACATCACAGCACCAGGAACACTAATCTTAGCTTCATGGCCTCAAAATGTTCCAGCAACAGAGCTGCAATACCAGAACAGTCTCTTCAGCAACTTCAACCTGTTAAGTGGAACATCAATGTCATGTCCACACGTTGCAGGTGTAGCAGCACTTTTAAAAGAAATGCACCCTTGTTGGAGCCCAGCAGCCATTAGATCGGCTATGATGACAACATCAGACATGTTAGACAACACAAAAGAACTCATCACAGACATTGGTAATGGTTACAAACCAGCTTCGCCTTTAGCTTTGGGAGCCGGACATATCAATCCCAATAGAGCACTTGATCCTGGACTTGTTTATGATGCAGGAAAACAAGATTATGTGAATCTTCTATGTGCATTAAACTTCACTCAGAAGAATATCACGGCCATCACGAGATCATCTTTTAACAATTGTTCTAACCCTTCTTTGGACCTTAATTACCCTTCTTTTATTGCCTTTTCCAATAATGCTAGTATTAAATCAAAGGTGATTACACAAGAATTTCAAAGAACAGTAACCAATGTTGGAGAGGAACCAACGATCTACGTAGCCAACATTACACCTATTGAAGGGTTCCATGTTAGTGTTGTGCCAAACAAGTTGGTGTTTAAGGAGAAAAATGAAAAGGTGGCATACAAGTTGAGGATAGAAGGTCCCAAAATGGAGCAAAATAAAGTAGTTTTTGGGTATCTCACTTGGACAGACTCGAAACACAATGTTAGAAGTCCCATTGTGGTGACTAGCCTCAACTCAGAATTAACACCCCCATAG

Protein sequence

>Msa1037570

MVSTLCLCTKAIPNIDHLYSTMASHIHHYLLLSFIIILHLFSSTLCDQNSNNYIIHMNLSAMPKPFSSQQSWYLATLSSLLDNITSNNDQLNHIFSSKLTYTYTNVMNGFSASLSPLELEALKTIPGYISSIRDLPIKPDTTHSPHFIGLNPIFGTWPSTQYGKNVIIGLIDSGIWPESESFKDDEMPNIPSRWKGKCENGTQFDPSLCNKKLIGARFFNKGLLANNPNITITMNSTRDIDGHGTHTTTTAAGSKVEGASYFGYASGSAIGMAPHAHVSMYKVLWKEGAYASDTIAAIDSAISDGVDVLSLSLGFDEAPLYEDPVAIATFAAMEKNIFVSTSAGNRGPVLETLHNGTPWVITVAAGTMDREFHGDLTLGNGAKVTGLSLYPGNFSSGKVPMVFLSSCDNLKELIRARNKIVVCEDKNRTLATQVDNLDRIKVVAGVFISNSSEDITYYIQTKFPSIFLNPINGELIKDFIKCNTNPKASMTFNKTVLGTKPAPSVDSYSSRGPSHSCPFVLKPDITAPGTLILASWPQNVPATELQYQNSLFSNFNLLSGTSMSCPHVAGVAALLKEMHPCWSPAAIRSAMMTTSDMLDNTKELITDIGNGYKPASPLALGAGHINPNRALDPGLVYDAGKQDYVNLLCALNFTQKNITAITRSSFNNCSNPSLDLNYPSFIAFSNNASIKSKVITQEFQRTVTNVGEEPTIYVANITPIEGFHVSVVPNKLVFKEKNEKVAYKLRIEGPKMEQNKVVFGYLTWTDSKHNVRSPIVVTSLNSELTPP*