AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1247240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1247240 MtrunA17_Chr8g0361811 97.963 491 7 1 1 488 1 491 0.0 990
Msa1247240 MtrunA17_Chr5g0416971 47.647 510 178 22 17 488 7 465 6.65e-112 338
Msa1247240 MtrunA17_Chr7g0255061 28.657 335 192 12 112 420 133 446 2.64e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1247240 AT2G02950.1 36.652 442 169 19 48 456 48 411 1.41e-50 178
Msa1247240 AT1G14280.1 32.955 440 142 22 75 457 74 417 2.55e-36 140

Find 77 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAGCTGTTAGAGTTTC+TGG 0.087161 8_2:+39824003 Msa1247240:CDS
GCAGAAGAAATTGGAGTATT+TGG 0.123215 8_2:+39822977 Msa1247240:CDS
GGTTTCAATGGTGTCCTTAT+TGG 0.178083 8_2:-39823922 None:intergenic
AGAAAATCACTTGAAGTATT+TGG 0.207408 8_2:+39823565 Msa1247240:CDS
AATAACAAAACTTCTAAGTA+TGG 0.262272 8_2:+39823310 Msa1247240:CDS
ATTCATTGACCAATGATAAA+AGG 0.266711 8_2:+39823623 Msa1247240:CDS
TGAGTTTCTATGGTTGATAA+AGG 0.315919 8_2:-39822933 None:intergenic
CACTCTTTAAGAGTGCATTT+TGG 0.317265 8_2:-39823153 None:intergenic
TTCAAAAGCAAGAGAAGTTA+AGG 0.319574 8_2:+39823449 Msa1247240:CDS
TCTCAAGTGGCAAGGTTTCC+AGG 0.321527 8_2:+39824099 Msa1247240:CDS
AAACAATGAAAAGAATAGTT+TGG 0.330151 8_2:+39823480 Msa1247240:CDS
GATGAAGAGGTGAGTTTCTA+TGG 0.335515 8_2:-39822943 None:intergenic
TTGTTTCTCATAAGTTATAA+AGG 0.342594 8_2:-39824031 None:intergenic
GTGGAAAAGGCAGAAGAAAT+TGG 0.345679 8_2:+39822968 Msa1247240:CDS
TGATAAAGGGATTGATTGTT+TGG 0.345694 8_2:-39822919 None:intergenic
GGTGTCTCCTTAGCGACTTT+TGG 0.350009 8_2:-39823943 None:intergenic
TTTCCAGGAGAGACAAATTA+TGG 0.358877 8_2:+39824114 Msa1247240:CDS
AGAAAGTACCAAGTTGAGTA+TGG 0.364459 8_2:+39823094 Msa1247240:CDS
CACTCGGCGCGTAACAATTC+GGG 0.365890 8_2:-39823810 None:intergenic
TTATTGATCAATATTGGATT+TGG 0.374889 8_2:-39823592 None:intergenic
AGTGGAGTGAGAAATTCTAT+AGG 0.378295 8_2:+39823172 Msa1247240:CDS
TGAAGCATGTGGCGAGTTAG+AGG 0.378519 8_2:-39824187 None:intergenic
CATTTGATGAAGGTTGGTTT+TGG 0.386793 8_2:-39822783 None:intergenic
CGGCGGCCTGGCATGTTGTT+GGG 0.387012 8_2:+39823970 Msa1247240:CDS
AGACAAATTATGGTGCAAAA+AGG 0.387401 8_2:+39824124 Msa1247240:CDS
GCGGCGGCCTGGCATGTTGT+TGG 0.388150 8_2:+39823969 Msa1247240:CDS
GCACCATAATTTGTCTCTCC+TGG 0.390731 8_2:-39824117 None:intergenic
TTACAATAAGGAGTCCAATA+AGG 0.397883 8_2:+39823908 Msa1247240:CDS
TCTAAGTATGGTGCAGTTCA+AGG 0.411902 8_2:+39823322 Msa1247240:CDS
GAGTTTCTATGGTTGATAAA+GGG 0.419694 8_2:-39822932 None:intergenic
GTGGAGTGAGAAATTCTATA+GGG 0.424894 8_2:+39823173 Msa1247240:CDS
ACCTCTTCATCAAGTGGAAA+AGG 0.438766 8_2:+39822955 Msa1247240:CDS
AAATGTCTGAGTTTACAATA+AGG 0.441417 8_2:+39823896 Msa1247240:CDS
TTATACCACACCACCATTGC+AGG 0.447302 8_2:+39824164 Msa1247240:CDS
GAGACACCGAGGCGGCGGCC+TGG 0.448368 8_2:+39823958 Msa1247240:CDS
AGGTACTTTGTAGAAGGTCT+TGG 0.451368 8_2:-39823037 None:intergenic
TCAAAAGCAAGAGAAGTTAA+GGG 0.452923 8_2:+39823450 Msa1247240:CDS
AACATGCCAGGCCGCCGCCT+CGG 0.461235 8_2:-39823964 None:intergenic
CAGAAACTCTAACAGCTTTG+TGG 0.461380 8_2:-39824002 None:intergenic
TCTAGTAAGAAAATTATTGT+TGG 0.463660 8_2:-39823755 None:intergenic
TTGTTTCCTTTCTCTGAGGA+AGG 0.475302 8_2:-39823057 None:intergenic
AGTAAGAAAATTATTGTTGG+AGG 0.492045 8_2:-39823752 None:intergenic
TAAAACTGATTTCACTTGCA+TGG 0.493162 8_2:-39823288 None:intergenic
TTTAGTAAGATTTCTGAGCT+AGG 0.493301 8_2:-39823412 None:intergenic
TGAAAGTTTGCATTTGATGA+AGG 0.498109 8_2:-39822793 None:intergenic
CATTCTATGCTTGCCTCACT+CGG 0.500118 8_2:-39823826 None:intergenic
AAAGTACCTTCCTCAGAGAA+AGG 0.512613 8_2:+39823051 Msa1247240:CDS
AGTTTGCATTTGATGAAGGT+TGG 0.517268 8_2:-39822789 None:intergenic
TTGCATCCCAACAACATGCC+AGG 0.520880 8_2:-39823976 None:intergenic
TGAGGAAGGTACTTTGTAGA+AGG 0.524612 8_2:-39823043 None:intergenic
GTAAGAAAATTATTGTTGGA+GGG 0.526521 8_2:-39823751 None:intergenic
GTTGACACAGAGCTAATACT+TGG 0.526983 8_2:-39823121 None:intergenic
TTTGAGATTGAGAGTCTCAA+AGG 0.541185 8_2:+39823724 Msa1247240:CDS
CTAAGGAGACACCGAGGCGG+CGG 0.545196 8_2:+39823953 Msa1247240:CDS
CGAGTGAGGCAAGCATAGAA+TGG 0.547758 8_2:+39823827 Msa1247240:CDS
AAATACTTGAATATCAAAGA+AGG 0.548270 8_2:+39822866 Msa1247240:CDS
AAACTCACCTCTTCATCAAG+TGG 0.559292 8_2:+39822949 Msa1247240:CDS
AGAAAACAGCATCATGGAGA+TGG 0.560068 8_2:-39822841 None:intergenic
ATTTAGAGAAAACAGCATCA+TGG 0.565824 8_2:-39822847 None:intergenic
TTGGAGTTCCATACTCAACT+TGG 0.566689 8_2:-39823102 None:intergenic
AAACAATACTAATTCTCAAG+TGG 0.581231 8_2:+39824086 Msa1247240:CDS
ATACTAATTCTCAAGTGGCA+AGG 0.582567 8_2:+39824091 Msa1247240:CDS
AAGCAAGAGAAGTTAAGGGT+AGG 0.593464 8_2:+39823454 Msa1247240:CDS
CAAAATGCACTCTTAAAGAG+TGG 0.600036 8_2:+39823154 Msa1247240:CDS
ATTGAAACCAAAAGTCGCTA+AGG 0.601572 8_2:+39823936 Msa1247240:CDS
TATAGTAACTTTGAAGCATG+TGG 0.603295 8_2:-39824198 None:intergenic
GAGTTAGAGGCCTGCAATGG+TGG 0.606643 8_2:-39824174 None:intergenic
AAAAGGCATGGACAACAACA+TGG 0.612027 8_2:+39824141 Msa1247240:CDS
GTATTAGCTCTGTGTCAACA+TGG 0.612942 8_2:+39823125 Msa1247240:CDS
TCCTCAGAGAAAGGAAACAA+TGG 0.613500 8_2:+39823060 Msa1247240:CDS
GCCATTGTTTCCTTTCTCTG+AGG 0.638901 8_2:-39823061 None:intergenic
AGAGGCCTGCAATGGTGGTG+TGG 0.651196 8_2:-39824169 None:intergenic
GAATTGTTACGCGCCGAGTG+AGG 0.653973 8_2:+39823813 Msa1247240:CDS
GGCGAGTTAGAGGCCTGCAA+TGG 0.698179 8_2:-39824177 None:intergenic
GGCAAGCATAGAATGGAGTG+TGG 0.714785 8_2:+39823834 Msa1247240:CDS
TCGCTAAGGAGACACCGAGG+CGG 0.748620 8_2:+39823950 Msa1247240:CDS
AAGTCGCTAAGGAGACACCG+AGG 0.807856 8_2:+39823947 Msa1247240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACTTGAATATCAAAGA+AGG + chr8_2:39822866-39822885 Msa1247240:CDS 20.0%
!! AATAACAAAACTTCTAAGTA+TGG + chr8_2:39823310-39823329 Msa1247240:CDS 20.0%
!! AAACAATGAAAAGAATAGTT+TGG + chr8_2:39823480-39823499 Msa1247240:CDS 20.0%
!! TTATTGATCAATATTGGATT+TGG - chr8_2:39823595-39823614 None:intergenic 20.0%
!!! CTTTTGTTATTGATCAATAT+TGG - chr8_2:39823601-39823620 None:intergenic 20.0%
!!! AAATATCAACCTTTTATCAT+TGG - chr8_2:39823635-39823654 None:intergenic 20.0%
!!! TTATCAATTTCTTCCATTTT+TGG - chr8_2:39823658-39823677 None:intergenic 20.0%
!! TCTAGTAAGAAAATTATTGT+TGG - chr8_2:39823758-39823777 None:intergenic 20.0%
!!! TTGTTTCTCATAAGTTATAA+AGG - chr8_2:39824034-39824053 None:intergenic 20.0%
!! AAATACTTGAATATCAAAGA+AGG + chr8_2:39822866-39822885 Msa1247240:CDS 20.0%
!! AATAACAAAACTTCTAAGTA+TGG + chr8_2:39823310-39823329 Msa1247240:CDS 20.0%
!! AAACAATGAAAAGAATAGTT+TGG + chr8_2:39823480-39823499 Msa1247240:CDS 20.0%
!! TTATTGATCAATATTGGATT+TGG - chr8_2:39823595-39823614 None:intergenic 20.0%
!!! CTTTTGTTATTGATCAATAT+TGG - chr8_2:39823601-39823620 None:intergenic 20.0%
!!! AAATATCAACCTTTTATCAT+TGG - chr8_2:39823635-39823654 None:intergenic 20.0%
!!! TTATCAATTTCTTCCATTTT+TGG - chr8_2:39823658-39823677 None:intergenic 20.0%
!! TCTAGTAAGAAAATTATTGT+TGG - chr8_2:39823758-39823777 None:intergenic 20.0%
!!! TTGTTTCTCATAAGTTATAA+AGG - chr8_2:39824034-39824053 None:intergenic 20.0%
! GGAAAGTTTATAGCAAAAAT+TGG + chr8_2:39822887-39822906 Msa1247240:CDS 25.0%
!! AATACTTCAAGTGATTTTCT+TGG - chr8_2:39823565-39823584 None:intergenic 25.0%
!! AGAAAATCACTTGAAGTATT+TGG + chr8_2:39823565-39823584 Msa1247240:CDS 25.0%
! ATTCATTGACCAATGATAAA+AGG + chr8_2:39823623-39823642 Msa1247240:CDS 25.0%
!!! AAGGTTGATATTTCCAAAAA+TGG + chr8_2:39823642-39823661 Msa1247240:CDS 25.0%
! GTAAGAAAATTATTGTTGGA+GGG - chr8_2:39823754-39823773 None:intergenic 25.0%
! AGTAAGAAAATTATTGTTGG+AGG - chr8_2:39823755-39823774 None:intergenic 25.0%
! AAATGTCTGAGTTTACAATA+AGG + chr8_2:39823896-39823915 Msa1247240:CDS 25.0%
!!! TTGTTTCTGCTACTAATTTT+TGG - chr8_2:39824066-39824085 None:intergenic 25.0%
! AAACAATACTAATTCTCAAG+TGG + chr8_2:39824086-39824105 Msa1247240:CDS 25.0%
! GGAAAGTTTATAGCAAAAAT+TGG + chr8_2:39822887-39822906 Msa1247240:CDS 25.0%
!! AATACTTCAAGTGATTTTCT+TGG - chr8_2:39823565-39823584 None:intergenic 25.0%
!! AGAAAATCACTTGAAGTATT+TGG + chr8_2:39823565-39823584 Msa1247240:CDS 25.0%
! ATTCATTGACCAATGATAAA+AGG + chr8_2:39823623-39823642 Msa1247240:CDS 25.0%
!!! AAGGTTGATATTTCCAAAAA+TGG + chr8_2:39823642-39823661 Msa1247240:CDS 25.0%
! GTAAGAAAATTATTGTTGGA+GGG - chr8_2:39823754-39823773 None:intergenic 25.0%
! AGTAAGAAAATTATTGTTGG+AGG - chr8_2:39823755-39823774 None:intergenic 25.0%
! AAATGTCTGAGTTTACAATA+AGG + chr8_2:39823896-39823915 Msa1247240:CDS 25.0%
!!! TTGTTTCTGCTACTAATTTT+TGG - chr8_2:39824066-39824085 None:intergenic 25.0%
! AAACAATACTAATTCTCAAG+TGG + chr8_2:39824086-39824105 Msa1247240:CDS 25.0%
TGAAAGTTTGCATTTGATGA+AGG - chr8_2:39822796-39822815 None:intergenic 30.0%
ATTTAGAGAAAACAGCATCA+TGG - chr8_2:39822850-39822869 None:intergenic 30.0%
TGATAAAGGGATTGATTGTT+TGG - chr8_2:39822922-39822941 None:intergenic 30.0%
!! GAGTTTCTATGGTTGATAAA+GGG - chr8_2:39822935-39822954 None:intergenic 30.0%
!! TGAGTTTCTATGGTTGATAA+AGG - chr8_2:39822936-39822955 None:intergenic 30.0%
GCTGAAAAATACTTCAATAG+AGG + chr8_2:39823001-39823020 Msa1247240:CDS 30.0%
! TAAAACTGATTTCACTTGCA+TGG - chr8_2:39823291-39823310 None:intergenic 30.0%
!!! CCAAGATTGAACACTTTTTT+CGG - chr8_2:39823358-39823377 None:intergenic 30.0%
TTTAGTAAGATTTCTGAGCT+AGG - chr8_2:39823415-39823434 None:intergenic 30.0%
TTCAAAAGCAAGAGAAGTTA+AGG + chr8_2:39823449-39823468 Msa1247240:CDS 30.0%
TCAAAAGCAAGAGAAGTTAA+GGG + chr8_2:39823450-39823469 Msa1247240:CDS 30.0%
TTACAATAAGGAGTCCAATA+AGG + chr8_2:39823908-39823927 Msa1247240:CDS 30.0%
AGACAAATTATGGTGCAAAA+AGG + chr8_2:39824124-39824143 Msa1247240:CDS 30.0%
!! TATAGTAACTTTGAAGCATG+TGG - chr8_2:39824201-39824220 None:intergenic 30.0%
TGAAAGTTTGCATTTGATGA+AGG - chr8_2:39822796-39822815 None:intergenic 30.0%
ATTTAGAGAAAACAGCATCA+TGG - chr8_2:39822850-39822869 None:intergenic 30.0%
TGATAAAGGGATTGATTGTT+TGG - chr8_2:39822922-39822941 None:intergenic 30.0%
!! GAGTTTCTATGGTTGATAAA+GGG - chr8_2:39822935-39822954 None:intergenic 30.0%
!! TGAGTTTCTATGGTTGATAA+AGG - chr8_2:39822936-39822955 None:intergenic 30.0%
GCTGAAAAATACTTCAATAG+AGG + chr8_2:39823001-39823020 Msa1247240:CDS 30.0%
! TAAAACTGATTTCACTTGCA+TGG - chr8_2:39823291-39823310 None:intergenic 30.0%
!!! CCAAGATTGAACACTTTTTT+CGG - chr8_2:39823358-39823377 None:intergenic 30.0%
TTTAGTAAGATTTCTGAGCT+AGG - chr8_2:39823415-39823434 None:intergenic 30.0%
TTCAAAAGCAAGAGAAGTTA+AGG + chr8_2:39823449-39823468 Msa1247240:CDS 30.0%
TCAAAAGCAAGAGAAGTTAA+GGG + chr8_2:39823450-39823469 Msa1247240:CDS 30.0%
TTACAATAAGGAGTCCAATA+AGG + chr8_2:39823908-39823927 Msa1247240:CDS 30.0%
AGACAAATTATGGTGCAAAA+AGG + chr8_2:39824124-39824143 Msa1247240:CDS 30.0%
!! TATAGTAACTTTGAAGCATG+TGG - chr8_2:39824201-39824220 None:intergenic 30.0%
!!! CATTTGATGAAGGTTGGTTT+TGG - chr8_2:39822786-39822805 None:intergenic 35.0%
AGTTTGCATTTGATGAAGGT+TGG - chr8_2:39822792-39822811 None:intergenic 35.0%
! GCAGAAGAAATTGGAGTATT+TGG + chr8_2:39822977-39822996 Msa1247240:CDS 35.0%
!! AGAAAGTACCAAGTTGAGTA+TGG + chr8_2:39823094-39823113 Msa1247240:CDS 35.0%
!! CACTCTTTAAGAGTGCATTT+TGG - chr8_2:39823156-39823175 None:intergenic 35.0%
CAAAATGCACTCTTAAAGAG+TGG + chr8_2:39823154-39823173 Msa1247240:CDS 35.0%
AGTGGAGTGAGAAATTCTAT+AGG + chr8_2:39823172-39823191 Msa1247240:CDS 35.0%
GTGGAGTGAGAAATTCTATA+GGG + chr8_2:39823173-39823192 Msa1247240:CDS 35.0%
!! CCGAAAAAAGTGTTCAATCT+TGG + chr8_2:39823355-39823374 Msa1247240:CDS 35.0%
! GGTGTCTTTTCTTCATCTAA+TGG - chr8_2:39823544-39823563 None:intergenic 35.0%
! TTTGAGATTGAGAGTCTCAA+AGG + chr8_2:39823724-39823743 Msa1247240:CDS 35.0%
!!! TTAGCGACTTTTGGTTTCAA+TGG - chr8_2:39823937-39823956 None:intergenic 35.0%
ATTGAAACCAAAAGTCGCTA+AGG + chr8_2:39823936-39823955 Msa1247240:CDS 35.0%
ATACTAATTCTCAAGTGGCA+AGG + chr8_2:39824091-39824110 Msa1247240:CDS 35.0%
TTTCCAGGAGAGACAAATTA+TGG + chr8_2:39824114-39824133 Msa1247240:CDS 35.0%
AATTATGGTGCAAAAAGGCA+TGG + chr8_2:39824129-39824148 Msa1247240:CDS 35.0%
!!! CATTTGATGAAGGTTGGTTT+TGG - chr8_2:39822786-39822805 None:intergenic 35.0%
AGTTTGCATTTGATGAAGGT+TGG - chr8_2:39822792-39822811 None:intergenic 35.0%
! GCAGAAGAAATTGGAGTATT+TGG + chr8_2:39822977-39822996 Msa1247240:CDS 35.0%
!! AGAAAGTACCAAGTTGAGTA+TGG + chr8_2:39823094-39823113 Msa1247240:CDS 35.0%
!! CACTCTTTAAGAGTGCATTT+TGG - chr8_2:39823156-39823175 None:intergenic 35.0%
CAAAATGCACTCTTAAAGAG+TGG + chr8_2:39823154-39823173 Msa1247240:CDS 35.0%
AGTGGAGTGAGAAATTCTAT+AGG + chr8_2:39823172-39823191 Msa1247240:CDS 35.0%
GTGGAGTGAGAAATTCTATA+GGG + chr8_2:39823173-39823192 Msa1247240:CDS 35.0%
!! CCGAAAAAAGTGTTCAATCT+TGG + chr8_2:39823355-39823374 Msa1247240:CDS 35.0%
! GGTGTCTTTTCTTCATCTAA+TGG - chr8_2:39823544-39823563 None:intergenic 35.0%
! TTTGAGATTGAGAGTCTCAA+AGG + chr8_2:39823724-39823743 Msa1247240:CDS 35.0%
!!! TTAGCGACTTTTGGTTTCAA+TGG - chr8_2:39823937-39823956 None:intergenic 35.0%
ATTGAAACCAAAAGTCGCTA+AGG + chr8_2:39823936-39823955 Msa1247240:CDS 35.0%
ATACTAATTCTCAAGTGGCA+AGG + chr8_2:39824091-39824110 Msa1247240:CDS 35.0%
TTTCCAGGAGAGACAAATTA+TGG + chr8_2:39824114-39824133 Msa1247240:CDS 35.0%
AATTATGGTGCAAAAAGGCA+TGG + chr8_2:39824129-39824148 Msa1247240:CDS 35.0%
!!! ATGAAGGTTGGTTTTGGTAG+TGG - chr8_2:39822780-39822799 None:intergenic 40.0%
AGAAAACAGCATCATGGAGA+TGG - chr8_2:39822844-39822863 None:intergenic 40.0%
GATGAAGAGGTGAGTTTCTA+TGG - chr8_2:39822946-39822965 None:intergenic 40.0%
AAACTCACCTCTTCATCAAG+TGG + chr8_2:39822949-39822968 Msa1247240:CDS 40.0%
ACCTCTTCATCAAGTGGAAA+AGG + chr8_2:39822955-39822974 Msa1247240:CDS 40.0%
GTGGAAAAGGCAGAAGAAAT+TGG + chr8_2:39822968-39822987 Msa1247240:CDS 40.0%
AGGTACTTTGTAGAAGGTCT+TGG - chr8_2:39823040-39823059 None:intergenic 40.0%
!! TGAGGAAGGTACTTTGTAGA+AGG - chr8_2:39823046-39823065 None:intergenic 40.0%
! AAAGTACCTTCCTCAGAGAA+AGG + chr8_2:39823051-39823070 Msa1247240:CDS 40.0%
! TTGTTTCCTTTCTCTGAGGA+AGG - chr8_2:39823060-39823079 None:intergenic 40.0%
TCCTCAGAGAAAGGAAACAA+TGG + chr8_2:39823060-39823079 Msa1247240:CDS 40.0%
TTGGAGTTCCATACTCAACT+TGG - chr8_2:39823105-39823124 None:intergenic 40.0%
GTTGACACAGAGCTAATACT+TGG - chr8_2:39823124-39823143 None:intergenic 40.0%
!! GTATTAGCTCTGTGTCAACA+TGG + chr8_2:39823125-39823144 Msa1247240:CDS 40.0%
TCTAAGTATGGTGCAGTTCA+AGG + chr8_2:39823322-39823341 Msa1247240:CDS 40.0%
AAGCAAGAGAAGTTAAGGGT+AGG + chr8_2:39823454-39823473 Msa1247240:CDS 40.0%
GGTTTCAATGGTGTCCTTAT+TGG - chr8_2:39823925-39823944 None:intergenic 40.0%
CAGAAACTCTAACAGCTTTG+TGG - chr8_2:39824005-39824024 None:intergenic 40.0%
CACAAAGCTGTTAGAGTTTC+TGG + chr8_2:39824003-39824022 Msa1247240:CDS 40.0%
! AAAAGGCATGGACAACAACA+TGG + chr8_2:39824141-39824160 Msa1247240:CDS 40.0%
!!! ATGAAGGTTGGTTTTGGTAG+TGG - chr8_2:39822780-39822799 None:intergenic 40.0%
AGAAAACAGCATCATGGAGA+TGG - chr8_2:39822844-39822863 None:intergenic 40.0%
GATGAAGAGGTGAGTTTCTA+TGG - chr8_2:39822946-39822965 None:intergenic 40.0%
AAACTCACCTCTTCATCAAG+TGG + chr8_2:39822949-39822968 Msa1247240:CDS 40.0%
ACCTCTTCATCAAGTGGAAA+AGG + chr8_2:39822955-39822974 Msa1247240:CDS 40.0%
GTGGAAAAGGCAGAAGAAAT+TGG + chr8_2:39822968-39822987 Msa1247240:CDS 40.0%
AGGTACTTTGTAGAAGGTCT+TGG - chr8_2:39823040-39823059 None:intergenic 40.0%
!! TGAGGAAGGTACTTTGTAGA+AGG - chr8_2:39823046-39823065 None:intergenic 40.0%
! AAAGTACCTTCCTCAGAGAA+AGG + chr8_2:39823051-39823070 Msa1247240:CDS 40.0%
! TTGTTTCCTTTCTCTGAGGA+AGG - chr8_2:39823060-39823079 None:intergenic 40.0%
TCCTCAGAGAAAGGAAACAA+TGG + chr8_2:39823060-39823079 Msa1247240:CDS 40.0%
TTGGAGTTCCATACTCAACT+TGG - chr8_2:39823105-39823124 None:intergenic 40.0%
GTTGACACAGAGCTAATACT+TGG - chr8_2:39823124-39823143 None:intergenic 40.0%
!! GTATTAGCTCTGTGTCAACA+TGG + chr8_2:39823125-39823144 Msa1247240:CDS 40.0%
TCTAAGTATGGTGCAGTTCA+AGG + chr8_2:39823322-39823341 Msa1247240:CDS 40.0%
AAGCAAGAGAAGTTAAGGGT+AGG + chr8_2:39823454-39823473 Msa1247240:CDS 40.0%
GGTTTCAATGGTGTCCTTAT+TGG - chr8_2:39823925-39823944 None:intergenic 40.0%
CAGAAACTCTAACAGCTTTG+TGG - chr8_2:39824005-39824024 None:intergenic 40.0%
CACAAAGCTGTTAGAGTTTC+TGG + chr8_2:39824003-39824022 Msa1247240:CDS 40.0%
! AAAAGGCATGGACAACAACA+TGG + chr8_2:39824141-39824160 Msa1247240:CDS 40.0%
! GCCTTTTCCACTTGATGAAG+AGG - chr8_2:39822959-39822978 None:intergenic 45.0%
GCCATTGTTTCCTTTCTCTG+AGG - chr8_2:39823064-39823083 None:intergenic 45.0%
CATTCTATGCTTGCCTCACT+CGG - chr8_2:39823829-39823848 None:intergenic 45.0%
! GCACCATAATTTGTCTCTCC+TGG - chr8_2:39824120-39824139 None:intergenic 45.0%
TTATACCACACCACCATTGC+AGG + chr8_2:39824164-39824183 Msa1247240:CDS 45.0%
! GCCTTTTCCACTTGATGAAG+AGG - chr8_2:39822959-39822978 None:intergenic 45.0%
GCCATTGTTTCCTTTCTCTG+AGG - chr8_2:39823064-39823083 None:intergenic 45.0%
CATTCTATGCTTGCCTCACT+CGG - chr8_2:39823829-39823848 None:intergenic 45.0%
! GCACCATAATTTGTCTCTCC+TGG - chr8_2:39824120-39824139 None:intergenic 45.0%
TTATACCACACCACCATTGC+AGG + chr8_2:39824164-39824183 Msa1247240:CDS 45.0%
TCACTCGGCGCGTAACAATT+CGG - chr8_2:39823814-39823833 None:intergenic 50.0%
CGAGTGAGGCAAGCATAGAA+TGG + chr8_2:39823827-39823846 Msa1247240:CDS 50.0%
GGCAAGCATAGAATGGAGTG+TGG + chr8_2:39823834-39823853 Msa1247240:CDS 50.0%
! GGTGTCTCCTTAGCGACTTT+TGG - chr8_2:39823946-39823965 None:intergenic 50.0%
TTGCATCCCAACAACATGCC+AGG - chr8_2:39823979-39823998 None:intergenic 50.0%
TCTCAAGTGGCAAGGTTTCC+AGG + chr8_2:39824099-39824118 Msa1247240:CDS 50.0%
TGAAGCATGTGGCGAGTTAG+AGG - chr8_2:39824190-39824209 None:intergenic 50.0%
TCACTCGGCGCGTAACAATT+CGG - chr8_2:39823814-39823833 None:intergenic 50.0%
CGAGTGAGGCAAGCATAGAA+TGG + chr8_2:39823827-39823846 Msa1247240:CDS 50.0%
GGCAAGCATAGAATGGAGTG+TGG + chr8_2:39823834-39823853 Msa1247240:CDS 50.0%
! GGTGTCTCCTTAGCGACTTT+TGG - chr8_2:39823946-39823965 None:intergenic 50.0%
TTGCATCCCAACAACATGCC+AGG - chr8_2:39823979-39823998 None:intergenic 50.0%
TCTCAAGTGGCAAGGTTTCC+AGG + chr8_2:39824099-39824118 Msa1247240:CDS 50.0%
TGAAGCATGTGGCGAGTTAG+AGG - chr8_2:39824190-39824209 None:intergenic 50.0%
GCGCGTAACAATTCGGGCTA+AGG - chr8_2:39823807-39823826 None:intergenic 55.0%
CACTCGGCGCGTAACAATTC+GGG - chr8_2:39823813-39823832 None:intergenic 55.0%
GAATTGTTACGCGCCGAGTG+AGG + chr8_2:39823813-39823832 Msa1247240:CDS 55.0%
AAGTCGCTAAGGAGACACCG+AGG + chr8_2:39823947-39823966 Msa1247240:CDS 55.0%
GAGTTAGAGGCCTGCAATGG+TGG - chr8_2:39824177-39824196 None:intergenic 55.0%
GCGCGTAACAATTCGGGCTA+AGG - chr8_2:39823807-39823826 None:intergenic 55.0%
CACTCGGCGCGTAACAATTC+GGG - chr8_2:39823813-39823832 None:intergenic 55.0%
GAATTGTTACGCGCCGAGTG+AGG + chr8_2:39823813-39823832 Msa1247240:CDS 55.0%
AAGTCGCTAAGGAGACACCG+AGG + chr8_2:39823947-39823966 Msa1247240:CDS 55.0%
GAGTTAGAGGCCTGCAATGG+TGG - chr8_2:39824177-39824196 None:intergenic 55.0%
TCGCTAAGGAGACACCGAGG+CGG + chr8_2:39823950-39823969 Msa1247240:CDS 60.0%
! AGAGGCCTGCAATGGTGGTG+TGG - chr8_2:39824172-39824191 None:intergenic 60.0%
GGCGAGTTAGAGGCCTGCAA+TGG - chr8_2:39824180-39824199 None:intergenic 60.0%
TCGCTAAGGAGACACCGAGG+CGG + chr8_2:39823950-39823969 Msa1247240:CDS 60.0%
! AGAGGCCTGCAATGGTGGTG+TGG - chr8_2:39824172-39824191 None:intergenic 60.0%
GGCGAGTTAGAGGCCTGCAA+TGG - chr8_2:39824180-39824199 None:intergenic 60.0%
CTAAGGAGACACCGAGGCGG+CGG + chr8_2:39823953-39823972 Msa1247240:CDS 65.0%
CGGCGGCCTGGCATGTTGTT+GGG + chr8_2:39823970-39823989 Msa1247240:CDS 65.0%
CTAAGGAGACACCGAGGCGG+CGG + chr8_2:39823953-39823972 Msa1247240:CDS 65.0%
CGGCGGCCTGGCATGTTGTT+GGG + chr8_2:39823970-39823989 Msa1247240:CDS 65.0%
AACATGCCAGGCCGCCGCCT+CGG - chr8_2:39823967-39823986 None:intergenic 70.0%
GCGGCGGCCTGGCATGTTGT+TGG + chr8_2:39823969-39823988 Msa1247240:CDS 70.0%
AACATGCCAGGCCGCCGCCT+CGG - chr8_2:39823967-39823986 None:intergenic 70.0%
GCGGCGGCCTGGCATGTTGT+TGG + chr8_2:39823969-39823988 Msa1247240:CDS 70.0%
! GAGACACCGAGGCGGCGGCC+TGG + chr8_2:39823958-39823977 Msa1247240:CDS 80.0%
! GAGACACCGAGGCGGCGGCC+TGG + chr8_2:39823958-39823977 Msa1247240:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 39822761 39824227 39822761 ID=Msa1247240;Name=Msa1247240
chr8_2 mRNA 39822761 39824227 39822761 ID=Msa1247240-mRNA-1;Parent=Msa1247240;Name=Msa1247240-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|488
chr8_2 exon 39822761 39824227 39822761 ID=Msa1247240-mRNA-1:exon:12272;Parent=Msa1247240-mRNA-1
chr8_2 CDS 39822761 39824227 39822761 ID=Msa1247240-mRNA-1:cds;Parent=Msa1247240-mRNA-1
Gene Sequence

>Msa1247240

ATGTTTACTTTATCTTCCACTACCAAAACCAACCTTCATCAAATGCAAACTTTCAACACTGAAAACAGTAACAATAACAACCATCTCCATGATGCTGTTTTCTCTAAATACTTGAATATCAAAGAAGGAAAGTTTATAGCAAAAATTGGTGAATCAAGCCAAACAATCAATCCCTTTATCAACCATAGAAACTCACCTCTTCATCAAGTGGAAAAGGCAGAAGAAATTGGAGTATTTGGAGCTGAAAAATACTTCAATAGAGGAGAAGTTGATACTCCAAGACCTTCTACAAAGTACCTTCCTCAGAGAAAGGAAACAATGGCTATAGAAACTAGAAAGTACCAAGTTGAGTATGGAACTCCAAGTATTAGCTCTGTGTCAACATGGAATAGCCAAAATGCACTCTTAAAGAGTGGAGTGAGAAATTCTATAGGGAATAGCAAAGAAAAAGAGCATGCTAAGAGTGTTCTATCGAGTCTTCGTCTCAAATGCTCTTGTTCTGATAAGAATTCTGTTGATATCAATGACCATGCAAGTGAAATCAGTTTTAATAACAAAACTTCTAAGTATGGTGCAGTTCAAGGTAAAACAACGCCGAAAAAAGTGTTCAATCTTGGTCTTGATGATGATCTTTCAGTCAGAATAAGAAAGCCTAGCTCAGAAATCTTACTAAACAAAGATGTTTACTTTCAAAAGCAAGAGAAGTTAAGGGTAGGATTAAACAATGAAAAGAATAGTTTGGCTTCTAACTCAAGAAATCATCTTGTTCAAATGCAAAATCCATTAGATGAAGAAAAGACACCAAGAAAATCACTTGAAGTATTTGGCTCACCAAATCCAATATTGATCAATAACAAAAGAAATTCATTGACCAATGATAAAAGGTTGATATTTCCAAAAATGGAAGAAATTGATAATGCAAACTATGATGATGATGCTGCAAGTGATGCAAGTTCAGATTTATTTGAGATTGAGAGTCTCAAAGGAAAACCCTCCAACAATAATTTTCTTACTAGACAGACATCAGATGCTGCTTCAAGTTGCCTTAGCCCGAATTGTTACGCGCCGAGTGAGGCAAGCATAGAATGGAGTGTGGTAACTGCAAGTGCTGCAGTTATGTCAGATTGCGAAGATCAAATGTCTGAGTTTACAATAAGGAGTCCAATAAGGACACCATTGAAACCAAAAGTCGCTAAGGAGACACCGAGGCGGCGGCCTGGCATGTTGTTGGGATGCAAGAGCCACAAAGCTGTTAGAGTTTCTGGTGATGCCTTTATAACTTATGAGAAACAAAGTTTAAGTCCAAAAATTAGTAGCAGAAACAAAAACAATACTAATTCTCAAGTGGCAAGGTTTCCAGGAGAGACAAATTATGGTGCAAAAAGGCATGGACAACAACATGGTTATACCACACCACCATTGCAGGCCTCTAACTCGCCACATGCTTCAAAGTTACTATACATTTAG

Protein sequence

>Msa1247240

MFTLSSTTKTNLHQMQTFNTENSNNNNHLHDAVFSKYLNIKEGKFIAKIGESSQTINPFINHRNSPLHQVEKAEEIGVFGAEKYFNRGEVDTPRPSTKYLPQRKETMAIETRKYQVEYGTPSISSVSTWNSQNALLKSGVRNSIGNSKEKEHAKSVLSSLRLKCSCSDKNSVDINDHASEISFNNKTSKYGAVQGKTTPKKVFNLGLDDDLSVRIRKPSSEILLNKDVYFQKQEKLRVGLNNEKNSLASNSRNHLVQMQNPLDEEKTPRKSLEVFGSPNPILINNKRNSLTNDKRLIFPKMEEIDNANYDDDAASDASSDLFEIESLKGKPSNNNFLTRQTSDAASSCLSPNCYAPSEASIEWSVVTASAAVMSDCEDQMSEFTIRSPIRTPLKPKVAKETPRRRPGMLLGCKSHKAVRVSGDAFITYEKQSLSPKISSRNKNNTNSQVARFPGETNYGAKRHGQQHGYTTPPLQASNSPHASKLLYI*