Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578990 | XP_003607878.1 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 7.34e-124 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578990 | sp|Q93VA3|CYC6_ARATH | 73.485 | 132 | 35 | 0 | 40 | 171 | 44 | 175 | 7.71e-73 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578990 | A2Q293 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 3.51e-124 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017980 | Msa0578990 | 0.801724 | 7.866867e-49 | -8.615850e-47 |
| Msa0024070 | Msa0578990 | 0.828859 | 7.112396e-55 | -8.615850e-47 |
| Msa0025340 | Msa0578990 | 0.817397 | 3.369297e-52 | -8.615850e-47 |
| Msa0028410 | Msa0578990 | 0.820133 | 8.055138e-53 | -8.615850e-47 |
| Msa0028450 | Msa0578990 | 0.801708 | 7.927962e-49 | -8.615850e-47 |
| Msa0030710 | Msa0578990 | 0.809374 | 1.952721e-50 | -8.615850e-47 |
| Msa0044700 | Msa0578990 | 0.809669 | 1.687708e-50 | -8.615850e-47 |
| Msa0045530 | Msa0578990 | 0.805585 | 1.243404e-49 | -8.615850e-47 |
| Msa0046090 | Msa0578990 | 0.808188 | 3.501400e-50 | -8.615850e-47 |
| Msa0052180 | Msa0578990 | 0.807172 | 5.756112e-50 | -8.615850e-47 |
| Msa0067820 | Msa0578990 | 0.825579 | 4.340829e-54 | -8.615850e-47 |
| Msa0079570 | Msa0578990 | 0.800589 | 1.342905e-48 | -8.615850e-47 |
| Msa0093830 | Msa0578990 | 0.822846 | 1.903643e-53 | -8.615850e-47 |
| Msa0097220 | Msa0578990 | 0.816128 | 6.487943e-52 | -8.615850e-47 |
| Msa0097490 | Msa0578990 | 0.821374 | 4.176872e-53 | -8.615850e-47 |
| Msa0102290 | Msa0578990 | 0.824356 | 8.437561e-54 | -8.615850e-47 |
| Msa0113910 | Msa0578990 | 0.808235 | 3.422153e-50 | -8.615850e-47 |
| Msa0124070 | Msa0578990 | 0.821383 | 4.156330e-53 | -8.615850e-47 |
| Msa0127110 | Msa0578990 | 0.803182 | 3.938297e-49 | -8.615850e-47 |
| Msa0131230 | Msa0578990 | 0.803089 | 4.117831e-49 | -8.615850e-47 |
| Msa0141090 | Msa0578990 | 0.806798 | 6.904331e-50 | -8.615850e-47 |
| Msa0147070 | Msa0578990 | 0.836131 | 1.120183e-56 | -8.615850e-47 |
| Msa0170550 | Msa0578990 | 0.818799 | 1.623188e-52 | -8.615850e-47 |
| Msa0181380 | Msa0578990 | 0.813530 | 2.442968e-51 | -8.615850e-47 |
| Msa0186750 | Msa0578990 | 0.811906 | 5.538015e-51 | -8.615850e-47 |
| Msa0234930 | Msa0578990 | 0.800481 | 1.412100e-48 | -8.615850e-47 |
| Msa0370180 | Msa0578990 | 0.814218 | 1.722973e-51 | -8.615850e-47 |
| Msa0371050 | Msa0578990 | 0.821987 | 3.013511e-53 | -8.615850e-47 |
| Msa0374840 | Msa0578990 | 0.806014 | 1.010538e-49 | -8.615850e-47 |
| Msa0375100 | Msa0578990 | 0.811330 | 7.389950e-51 | -8.615850e-47 |
| Msa0376760 | Msa0578990 | 0.806529 | 7.870889e-50 | -8.615850e-47 |
| Msa0380470 | Msa0578990 | 0.812984 | 3.220131e-51 | -8.615850e-47 |
| Msa0384570 | Msa0578990 | 0.824472 | 7.925789e-54 | -8.615850e-47 |
| Msa0439130 | Msa0578990 | 0.814160 | 1.774384e-51 | -8.615850e-47 |
| Msa0471700 | Msa0578990 | 0.805262 | 1.453114e-49 | -8.615850e-47 |
| Msa0475080 | Msa0578990 | 0.812646 | 3.817492e-51 | -8.615850e-47 |
| Msa0482020 | Msa0578990 | 0.802032 | 6.800905e-49 | -8.615850e-47 |
| Msa0266100 | Msa0578990 | 0.818351 | 2.050686e-52 | -8.615850e-47 |
| Msa0269790 | Msa0578990 | 0.828727 | 7.653066e-55 | -8.615850e-47 |
| Msa0273270 | Msa0578990 | 0.800150 | 1.649285e-48 | -8.615850e-47 |
| Msa0284980 | Msa0578990 | 0.822509 | 2.281066e-53 | -8.615850e-47 |
| Msa0285510 | Msa0578990 | 0.814656 | 1.378423e-51 | -8.615850e-47 |
| Msa0288300 | Msa0578990 | 0.811960 | 5.389351e-51 | -8.615850e-47 |
| Msa0288360 | Msa0578990 | 0.800136 | 1.660312e-48 | -8.615850e-47 |
| Msa0305810 | Msa0578990 | 0.804863 | 1.761355e-49 | -8.615850e-47 |
| Msa0307750 | Msa0578990 | 0.800972 | 1.121421e-48 | -8.615850e-47 |
| Msa0341710 | Msa0578990 | 0.811482 | 6.847918e-51 | -8.615850e-47 |
| Msa0485350 | Msa0578990 | 0.800522 | 1.385643e-48 | -8.615850e-47 |
| Msa0500580 | Msa0578990 | 0.805141 | 1.540800e-49 | -8.615850e-47 |
| Msa0506740 | Msa0578990 | 0.804525 | 2.071806e-49 | -8.615850e-47 |
| Msa0521840 | Msa0578990 | 0.802259 | 6.106468e-49 | -8.615850e-47 |
| Msa0522510 | Msa0578990 | 0.815011 | 1.150413e-51 | -8.615850e-47 |
| Msa0524570 | Msa0578990 | 0.804324 | 2.281502e-49 | -8.615850e-47 |
| Msa0527420 | Msa0578990 | 0.812650 | 3.809657e-51 | -8.615850e-47 |
| Msa0562040 | Msa0578990 | 0.808857 | 2.520405e-50 | -8.615850e-47 |
| Msa0565930 | Msa0578990 | 0.806624 | 7.516716e-50 | -8.615850e-47 |
| Msa0574450 | Msa0578990 | 0.806897 | 6.579736e-50 | -8.615850e-47 |
| Msa0578990 | Msa0581490 | 0.800043 | 1.734050e-48 | -8.615850e-47 |
| Msa0578990 | Msa0583810 | 0.818945 | 1.503790e-52 | -8.615850e-47 |
| Msa0578990 | Msa0610610 | 0.995073 | 9.104751e-213 | -8.615850e-47 |
| Msa0578990 | Msa0616570 | 0.815221 | 1.032894e-51 | -8.615850e-47 |
| Msa0578990 | Msa0649140 | 0.823987 | 1.030371e-53 | -8.615850e-47 |
| Msa0578990 | Msa0651250 | 0.927234 | 1.561242e-91 | -8.615850e-47 |
| Msa0578990 | Msa0655980 | 0.815335 | 9.747037e-52 | -8.615850e-47 |
| Msa0578990 | Msa0660160 | 0.802005 | 6.889060e-49 | -8.615850e-47 |
| Msa0578990 | Msa0693250 | 0.991447 | 1.069172e-187 | -8.615850e-47 |
| Msa0578990 | Msa0694810 | 0.815633 | 8.363507e-52 | -8.615850e-47 |
| Msa0578990 | Msa0699900 | 0.817125 | 3.877863e-52 | -8.615850e-47 |
| Msa0578990 | Msa0724120 | 0.802849 | 4.614502e-49 | -8.615850e-47 |
| Msa0578990 | Msa0748470 | 0.815534 | 8.800093e-52 | -8.615850e-47 |
| Msa0578990 | Msa0796840 | 0.806342 | 8.616662e-50 | -8.615850e-47 |
| Msa0578990 | Msa0841570 | 0.812082 | 5.069197e-51 | -8.615850e-47 |
| Msa0578990 | Msa0879820 | 0.809063 | 2.276467e-50 | -8.615850e-47 |
| Msa0578990 | Msa0880200 | 0.821944 | 3.083737e-53 | -8.615850e-47 |
| Msa0578990 | Msa0929440 | 0.806606 | 7.581699e-50 | -8.615850e-47 |
| Msa0578990 | Msa0932040 | 0.804674 | 1.928393e-49 | -8.615850e-47 |
| Msa0578990 | Msa0933320 | 0.802578 | 5.249772e-49 | -8.615850e-47 |
| Msa0578990 | Msa0959970 | 0.823223 | 1.554585e-53 | -8.615850e-47 |
| Msa0578990 | Msa0967940 | 0.810258 | 1.260494e-50 | -8.615850e-47 |
| Msa0578990 | Msa0970120 | 0.810503 | 1.116206e-50 | -8.615850e-47 |
| Msa0578990 | Msa0970160 | 0.809926 | 1.486152e-50 | -8.615850e-47 |
| Msa0578990 | Msa0971100 | 0.802849 | 4.614522e-49 | -8.615850e-47 |
| Msa0578990 | Msa0985570 | 0.832909 | 7.223199e-56 | -8.615850e-47 |
| Msa0578990 | Msa1126980 | 0.825191 | 5.361393e-54 | -8.615850e-47 |
| Msa0578990 | Msa1134840 | 0.814451 | 1.530214e-51 | -8.615850e-47 |
| Msa0578990 | Msa1154130 | 0.803190 | 3.923183e-49 | -8.615850e-47 |
| Msa0578990 | Msa1166020 | 0.803449 | 3.467065e-49 | -8.615850e-47 |
| Msa0578990 | Msa1177300 | 0.810721 | 1.001321e-50 | -8.615850e-47 |
| Msa0578990 | Msa1190670 | 0.824926 | 6.194331e-54 | -8.615850e-47 |
| Msa0578990 | Msa1197210 | 0.832435 | 9.471405e-56 | -8.615850e-47 |
| Msa0578990 | Msa1209390 | 0.806203 | 9.221547e-50 | -8.615850e-47 |
| Msa0578990 | Msa1221580 | 0.802404 | 5.701173e-49 | -8.615850e-47 |
| Msa0578990 | Msa1222020 | 0.813189 | 2.902467e-51 | -8.615850e-47 |
| Msa0578990 | Msa1223050 | 0.816394 | 5.655885e-52 | -8.615850e-47 |
| Msa0578990 | Msa1223520 | 0.813988 | 1.936832e-51 | -8.615850e-47 |
| Msa0578990 | Msa1223600 | 0.807213 | 5.641556e-50 | -8.615850e-47 |
| Msa0578990 | Msa1226330 | 0.807999 | 3.841097e-50 | -8.615850e-47 |
| Msa0578990 | Msa1236090 | 0.823389 | 1.422221e-53 | -8.615850e-47 |
| Msa0578990 | Msa1244940 | 0.819381 | 1.196968e-52 | -8.615850e-47 |
| Msa0578990 | Msa1251830 | 0.809861 | 1.534508e-50 | -8.615850e-47 |
| Msa0578990 | Msa1251890 | 0.805058 | 1.603412e-49 | -8.615850e-47 |
| Msa0578990 | Msa1263460 | 0.803846 | 2.869295e-49 | -8.615850e-47 |
| Msa0578990 | Msa1263600 | 0.811421 | 7.062427e-51 | -8.615850e-47 |
| Msa0578990 | Msa1297550 | 0.809247 | 2.079682e-50 | -8.615850e-47 |
| Msa0578990 | Msa1302750 | 0.806977 | 6.330559e-50 | -8.615850e-47 |
| Msa0578990 | Msa1316090 | 0.804587 | 2.011265e-49 | -8.615850e-47 |
| Msa0578990 | Msa1317090 | 0.809078 | 2.260266e-50 | -8.615850e-47 |
| Msa0578990 | Msa1325260 | 0.832886 | 7.316551e-56 | -8.615850e-47 |
| Msa0578990 | Msa1325270 | 0.805232 | 1.474177e-49 | -8.615850e-47 |
| Msa0578990 | Msa1356500 | 0.810332 | 1.214832e-50 | -8.615850e-47 |
| Msa0578990 | Msa1371690 | 0.807402 | 5.144207e-50 | -8.615850e-47 |
| Msa0578990 | Msa1396310 | 0.809212 | 2.115541e-50 | -8.615850e-47 |
| Msa0578990 | Msa1428050 | 0.801854 | 7.398967e-49 | -8.615850e-47 |
| Msa0578990 | Msa1444750 | 0.829351 | 5.404536e-55 | -8.615850e-47 |
| Msa0578990 | Msa1449510 | 0.806842 | 6.759034e-50 | -8.615850e-47 |
| Msa0578990 | Msa1455000 | 0.812019 | 5.232966e-51 | -8.615850e-47 |
| Msa0578990 | Msa1465950 | 0.802671 | 5.021739e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578990 | MtrunA17_Chr4g0043621 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 6.75e-128 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578990 | AT5G45040.1 | 73.485 | 132 | 35 | 0 | 40 | 171 | 44 | 175 | 7.84e-74 | 219 |
Find 50 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTTGCTTGTCTGATTTC+TGG | 0.156602 | 4_1:+83669642 | Msa0578990:CDS |
| CTCTTTGGATATCTATTGTT+TGG | 0.198050 | 4_1:-83671919 | None:intergenic |
| GGCTGAGTTTGTCAAGTTAC+AGG | 0.238541 | 4_1:+83672629 | Msa0578990:CDS |
| TTGCGGTCCAGAAGAGTTAT+TGG | 0.258091 | 4_1:-83672817 | None:intergenic |
| GTCAAGTTACAGGCTGATAA+AGG | 0.319514 | 4_1:+83672639 | Msa0578990:CDS |
| GAATTATCCAATAACTCTTC+TGG | 0.320875 | 4_1:+83672810 | Msa0578990:three_prime_UTR |
| CAACCTGGAGTGGCGCAAAT+TGG | 0.326523 | 4_1:-83669914 | None:intergenic |
| CCAGGAAACACACTAGGAAT+TGG | 0.330726 | 4_1:-83669527 | None:intergenic |
| TGAACAATGTTGCTCCTCTT+TGG | 0.345483 | 4_1:-83671934 | None:intergenic |
| CCACGAGGGCAGTGCACATT+TGG | 0.345899 | 4_1:+83672573 | Msa0578990:CDS |
| TCTTTGGATATCTATTGTTT+GGG | 0.347185 | 4_1:-83671918 | None:intergenic |
| CCAATTCCTAGTGTGTTTCC+TGG | 0.365226 | 4_1:+83669527 | Msa0578990:five_prime_UTR |
| ATCTACCGTGTCACGTACTA+TGG | 0.365275 | 4_1:+83672353 | Msa0578990:CDS |
| GTGCACATTTGGTGCTCGTT+TGG | 0.375964 | 4_1:+83672584 | Msa0578990:CDS |
| TCAGACAAGCAAGCTTCATT+TGG | 0.389961 | 4_1:-83669635 | None:intergenic |
| CCAACATATGAGGATATTCA+TGG | 0.412785 | 4_1:-83672876 | None:intergenic |
| CAATAATCCTGTCTCCATAA+AGG | 0.416161 | 4_1:+83669668 | Msa0578990:CDS |
| TTGTTCAGCCAAACATGTAT+TGG | 0.417027 | 4_1:+83671950 | Msa0578990:CDS |
| AGATGAAGATATCAAGATAT+TGG | 0.420639 | 4_1:+83672608 | Msa0578990:CDS |
| CGTGACATCCAATACATGTT+TGG | 0.423635 | 4_1:-83671958 | None:intergenic |
| CAGGAAACACACTAGGAATT+GGG | 0.443776 | 4_1:-83669526 | None:intergenic |
| ATTACAGGATAACGTGAAAC+GGG | 0.448174 | 4_1:+83669790 | Msa0578990:intron |
| TATAGTTCTACGCAGGGGTT+TGG | 0.449832 | 4_1:+83672537 | Msa0578990:intron |
| TCAAGTTACAGGCTGATAAA+GGG | 0.462996 | 4_1:+83672640 | Msa0578990:CDS |
| TCTCCAATTTGCGCCACTCC+AGG | 0.479406 | 4_1:+83669911 | Msa0578990:CDS |
| GATTACAGGATAACGTGAAA+CGG | 0.480757 | 4_1:+83669789 | Msa0578990:intron |
| ACCAATCCATAATGAAAAGA+TGG | 0.486136 | 4_1:-83672715 | None:intergenic |
| AAAACTTATGGCAGGTAACA+TGG | 0.498173 | 4_1:+83669489 | None:intergenic |
| GCGTGCGTATCTCAGATAGA+TGG | 0.511591 | 4_1:-83669585 | None:intergenic |
| AGTATAATGCACTTGTTACC+AGG | 0.530229 | 4_1:-83669545 | None:intergenic |
| TTATGGCAGGTAACATGGAA+TGG | 0.531680 | 4_1:+83669494 | None:intergenic |
| AGAAAGGCAGCCGCAAGAGG+AGG | 0.570107 | 4_1:-83669881 | None:intergenic |
| CCAAATGTGCACTGCCCTCG+TGG | 0.576137 | 4_1:-83672573 | None:intergenic |
| CAACTTGGCTCCTCCTCTTG+CGG | 0.582072 | 4_1:+83669871 | Msa0578990:CDS |
| AGCAGAAAGGCAGCCGCAAG+AGG | 0.590194 | 4_1:-83669884 | None:intergenic |
| TGTATTGGATGTCACGATGC+AGG | 0.593033 | 4_1:+83671965 | Msa0578990:CDS |
| AAGAGGTAACCAACCTGGAG+TGG | 0.599652 | 4_1:-83669924 | None:intergenic |
| CGTGTCACGTACTATGGCAA+AGG | 0.616930 | 4_1:+83672359 | Msa0578990:CDS |
| CAAACAATAGATATCCAAAG+AGG | 0.625176 | 4_1:+83671920 | Msa0578990:CDS |
| CTATGGCAAAGGAAGAATGC+CGG | 0.626553 | 4_1:+83672370 | Msa0578990:CDS |
| AATTGGAGAAAATAGCAGAA+AGG | 0.628466 | 4_1:-83669897 | None:intergenic |
| CTTTGCCATAGTACGTGACA+CGG | 0.648192 | 4_1:-83672358 | None:intergenic |
| TTGTTACCAGGAAACACACT+AGG | 0.649741 | 4_1:-83669533 | None:intergenic |
| TATTCACAAAGGATTTACAA+AGG | 0.666724 | 4_1:+83672122 | Msa0578990:CDS |
| GGTAAAGAGTGCATGCCACG+AGG | 0.676403 | 4_1:+83672558 | Msa0578990:CDS |
| ATCGTCTATATAATTAATTG+CGG | 0.680726 | 4_1:-83672834 | None:intergenic |
| GTAAAGAGTGCATGCCACGA+GGG | 0.681699 | 4_1:+83672559 | Msa0578990:CDS |
| AGTTACAGGCTGATAAAGGG+TGG | 0.682583 | 4_1:+83672643 | Msa0578990:CDS |
| GGGGTCAACTCTATTCACAA+AGG | 0.702168 | 4_1:+83672111 | Msa0578990:intron |
| ATTGGATGTCACGATGCAGG+TGG | 0.703936 | 4_1:+83671968 | Msa0578990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAATATTATATTGTG+AGG | - | chr4_1:83669762-83669781 | None:intergenic | 10.0% |
| !! | TATTTATCAAAAAAACATAT+TGG | + | chr4_1:83671644-83671663 | Msa0578990:intron | 10.0% |
| !!! | TTATATTTTTGTATATGTTT+TGG | + | chr4_1:83672775-83672794 | Msa0578990:three_prime_UTR | 10.0% |
| !!! | TATATTTTTGTATATGTTTT+GGG | + | chr4_1:83672776-83672795 | Msa0578990:three_prime_UTR | 10.0% |
| !!! | AGTTTAGTATTTTAAAAAAG+AGG | - | chr4_1:83669944-83669963 | None:intergenic | 15.0% |
| !! | CATTTCTAAATTAAATTGAA+GGG | - | chr4_1:83670566-83670585 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTCTACAATA+AGG | - | chr4_1:83671291-83671310 | None:intergenic | 15.0% |
| !! | ACATAACAATTAATATACTA+AGG | - | chr4_1:83671325-83671344 | None:intergenic | 15.0% |
| !! | TAATTAAGACATTTGATTAC+AGG | + | chr4_1:83669775-83669794 | Msa0578990:intron | 20.0% |
| !! | TCTATATAGAGAAAATTGAA+TGG | + | chr4_1:83670160-83670179 | Msa0578990:intron | 20.0% |
| !! | CTATATAGAGAAAATTGAAT+GGG | + | chr4_1:83670161-83670180 | Msa0578990:intron | 20.0% |
| !!! | TTTTTTTAAAACTCAGTATC+CGG | - | chr4_1:83670239-83670258 | None:intergenic | 20.0% |
| !!! | AGAAAAAAGCTTTGATTTAA+TGG | - | chr4_1:83670296-83670315 | None:intergenic | 20.0% |
| !! | CCATTTCTAAATTAAATTGA+AGG | - | chr4_1:83670567-83670586 | None:intergenic | 20.0% |
| !!! | CCTTCAATTTAATTTAGAAA+TGG | + | chr4_1:83670564-83670583 | Msa0578990:intron | 20.0% |
| !! | ACTTTGCATAAATTTCAATA+TGG | - | chr4_1:83671038-83671057 | None:intergenic | 20.0% |
| !! | ATATTGAAATTTATGCAAAG+TGG | + | chr4_1:83671037-83671056 | Msa0578990:intron | 20.0% |
| !!! | AAAGCACTAAATTTATCAAA+AGG | + | chr4_1:83672151-83672170 | Msa0578990:intron | 20.0% |
| !! | AAGCACTAAATTTATCAAAA+GGG | + | chr4_1:83672152-83672171 | Msa0578990:intron | 20.0% |
| !! | TATTCATATAAAAATTGCTC+TGG | + | chr4_1:83672235-83672254 | Msa0578990:intron | 20.0% |
| !! | TAAATGTTGTTCTATAGAAA+TGG | + | chr4_1:83672311-83672330 | Msa0578990:intron | 20.0% |
| !! | ATCGTCTATATAATTAATTG+CGG | - | chr4_1:83672837-83672856 | None:intergenic | 20.0% |
| ! | ACAAAACAAATAAGAGTGAA+TGG | - | chr4_1:83670006-83670025 | None:intergenic | 25.0% |
| !! | AGCATATTTTACTGTTTTAC+TGG | - | chr4_1:83670337-83670356 | None:intergenic | 25.0% |
| ! | TTCTAAATTAAATTGAAGGG+AGG | - | chr4_1:83670563-83670582 | None:intergenic | 25.0% |
| ! | AATGACTCGTTGAAAATTAA+AGG | + | chr4_1:83670608-83670627 | Msa0578990:intron | 25.0% |
| !! | AAACAATCATTTGTGTTTTG+AGG | + | chr4_1:83670698-83670717 | Msa0578990:intron | 25.0% |
| !!! | AACAATCATTTGTGTTTTGA+GGG | + | chr4_1:83670699-83670718 | Msa0578990:intron | 25.0% |
| !!! | TGAAGTTAGTTTTTTAGTCT+TGG | + | chr4_1:83670778-83670797 | Msa0578990:intron | 25.0% |
| !!! | ACAAATCAACTAGTTTTTTC+AGG | + | chr4_1:83670910-83670929 | Msa0578990:intron | 25.0% |
| ! | ATCAATGTTAAGATTGAAAG+AGG | - | chr4_1:83671069-83671088 | None:intergenic | 25.0% |
| ! | TCTTTCAATCTTAACATTGA+TGG | + | chr4_1:83671068-83671087 | Msa0578990:intron | 25.0% |
| !!! | TTTATTTTTCCTCTTGAACT+GGG | - | chr4_1:83671675-83671694 | None:intergenic | 25.0% |
| !!! | ATTTATTTTTCCTCTTGAAC+TGG | - | chr4_1:83671676-83671695 | None:intergenic | 25.0% |
| ! | TCTTTGGATATCTATTGTTT+GGG | - | chr4_1:83671921-83671940 | None:intergenic | 25.0% |
| !!! | ATATATCTAGCTTTATGTTC+TGG | + | chr4_1:83672031-83672050 | Msa0578990:intron | 25.0% |
| ! | AAGGAGAAAAAAAAAGGAAA+GGG | - | chr4_1:83672088-83672107 | None:intergenic | 25.0% |
| ! | TATTCACAAAGGATTTACAA+AGG | + | chr4_1:83672122-83672141 | Msa0578990:CDS | 25.0% |
| ! | AGCACTAAATTTATCAAAAG+GGG | + | chr4_1:83672153-83672172 | Msa0578990:intron | 25.0% |
| !!! | CATTGATTAGCTTTCATTTT+AGG | - | chr4_1:83672261-83672280 | None:intergenic | 25.0% |
| ! | AGATGAAGATATCAAGATAT+TGG | + | chr4_1:83672608-83672627 | Msa0578990:CDS | 25.0% |
| !!! | GTTGCTAAATCATTTTTGTT+CGG | - | chr4_1:83672682-83672701 | None:intergenic | 25.0% |
| ! | AGCAATGTCTTTTACCTTTA+TGG | - | chr4_1:83669685-83669704 | None:intergenic | 30.0% |
| AATATTATATTGTGAGGCTG+AGG | - | chr4_1:83669756-83669775 | None:intergenic | 30.0% | |
| !! | AGTCAAGTTTTTCAACAACT+TGG | + | chr4_1:83669856-83669875 | Msa0578990:CDS | 30.0% |
| AATTGGAGAAAATAGCAGAA+AGG | - | chr4_1:83669900-83669919 | None:intergenic | 30.0% | |
| AGCAATTTGAACAAAAAAGC+GGG | - | chr4_1:83669969-83669988 | None:intergenic | 30.0% | |
| GAGCAATTTGAACAAAAAAG+CGG | - | chr4_1:83669970-83669989 | None:intergenic | 30.0% | |
| TTGTACAAACTAGAAAGTAG+TGG | + | chr4_1:83670052-83670071 | Msa0578990:intron | 30.0% | |
| AAACTGTAAAGAACCATCTT+AGG | + | chr4_1:83670448-83670467 | Msa0578990:intron | 30.0% | |
| GTTAAATCACAAACCTAAGA+TGG | - | chr4_1:83670464-83670483 | None:intergenic | 30.0% | |
| TAATGTTCAAAGATCCTACA+TGG | - | chr4_1:83670486-83670505 | None:intergenic | 30.0% | |
| !! | TGAAAATTAAAGGAGCATTG+TGG | + | chr4_1:83670618-83670637 | Msa0578990:intron | 30.0% |
| TGGACATACATTAGGAATTT+AGG | - | chr4_1:83670659-83670678 | None:intergenic | 30.0% | |
| AAACATCTTGGACATACATT+AGG | - | chr4_1:83670667-83670686 | None:intergenic | 30.0% | |
| GTGGGAGAAATTTATAAGTA+TGG | + | chr4_1:83670744-83670763 | Msa0578990:intron | 30.0% | |
| AACTTAAAAACTCCCAAAGT+TGG | + | chr4_1:83670823-83670842 | Msa0578990:intron | 30.0% | |
| TAAAGATGCCAAAAATTGTC+AGG | - | chr4_1:83670949-83670968 | None:intergenic | 30.0% | |
| ! | TTGTTTTCACTATAAAGCAG+GGG | - | chr4_1:83671015-83671034 | None:intergenic | 30.0% |
| !! | GTTGTTTTCACTATAAAGCA+GGG | - | chr4_1:83671016-83671035 | None:intergenic | 30.0% |
| AATGTTAAGATTGAAAGAGG+TGG | - | chr4_1:83671066-83671085 | None:intergenic | 30.0% | |
| ! | ATATAGAAGTTGATTGACCA+AGG | - | chr4_1:83671181-83671200 | None:intergenic | 30.0% |
| TGGTCAATCAACTTCTATAT+TGG | + | chr4_1:83671181-83671200 | Msa0578990:intron | 30.0% | |
| !!! | TTAGTATTTTTTCCTTCACC+AGG | + | chr4_1:83671344-83671363 | Msa0578990:intron | 30.0% |
| ! | GATGTTTGAGATGTAAACTA+AGG | - | chr4_1:83671410-83671429 | None:intergenic | 30.0% |
| ACATCTCAAACATCTTCTTA+CGG | + | chr4_1:83671416-83671435 | Msa0578990:intron | 30.0% | |
| CTTACGATACATATGGTTAT+TGG | - | chr4_1:83671481-83671500 | None:intergenic | 30.0% | |
| CAATAACCATATGTATCGTA+AGG | + | chr4_1:83671479-83671498 | Msa0578990:intron | 30.0% | |
| AAAATGAGTTTCAGCTAAGA+GGG | - | chr4_1:83671579-83671598 | None:intergenic | 30.0% | |
| TAAAATGAGTTTCAGCTAAG+AGG | - | chr4_1:83671580-83671599 | None:intergenic | 30.0% | |
| ! | TTACATGCTCATTGACTATT+TGG | - | chr4_1:83671709-83671728 | None:intergenic | 30.0% |
| AAATAGTCAATGAGCATGTA+AGG | + | chr4_1:83671708-83671727 | Msa0578990:intron | 30.0% | |
| ATTAATCAGAATCCTGAGTA+TGG | - | chr4_1:83671761-83671780 | None:intergenic | 30.0% | |
| TATAACAACTTCAAGTCGAT+TGG | - | chr4_1:83671840-83671859 | None:intergenic | 30.0% | |
| CTCTTTGGATATCTATTGTT+TGG | - | chr4_1:83671922-83671941 | None:intergenic | 30.0% | |
| CAAACAATAGATATCCAAAG+AGG | + | chr4_1:83671920-83671939 | Msa0578990:CDS | 30.0% | |
| CAAGGAGAAAAAAAAAGGAA+AGG | - | chr4_1:83672089-83672108 | None:intergenic | 30.0% | |
| ! | TCTTTTCGAATTTGTGTAGA+CGG | + | chr4_1:83672200-83672219 | Msa0578990:intron | 30.0% |
| AGGATAATCATTAAAGCAGA+AGG | - | chr4_1:83672434-83672453 | None:intergenic | 30.0% | |
| ! | TCTCTTCCATCTTTTCATTA+TGG | + | chr4_1:83672709-83672728 | Msa0578990:three_prime_UTR | 30.0% |
| ! | TCCATCTTTTCATTATGGAT+TGG | + | chr4_1:83672714-83672733 | Msa0578990:three_prime_UTR | 30.0% |
| ACCAATCCATAATGAAAAGA+TGG | - | chr4_1:83672718-83672737 | None:intergenic | 30.0% | |
| !!! | TATGTTTTGGGTTGAGATAA+TGG | + | chr4_1:83672788-83672807 | Msa0578990:three_prime_UTR | 30.0% |
| GAATTATCCAATAACTCTTC+TGG | + | chr4_1:83672810-83672829 | Msa0578990:three_prime_UTR | 30.0% | |
| ! | AGTATAATGCACTTGTTACC+AGG | - | chr4_1:83669548-83669567 | None:intergenic | 35.0% |
| CAATAATCCTGTCTCCATAA+AGG | + | chr4_1:83669668-83669687 | Msa0578990:CDS | 35.0% | |
| ! | TCTTTTACCTTTATGGAGAC+AGG | - | chr4_1:83669678-83669697 | None:intergenic | 35.0% |
| GATTACAGGATAACGTGAAA+CGG | + | chr4_1:83669789-83669808 | Msa0578990:intron | 35.0% | |
| ATTACAGGATAACGTGAAAC+GGG | + | chr4_1:83669790-83669809 | Msa0578990:intron | 35.0% | |
| TAAAAAAGAGGTAACCAACC+TGG | - | chr4_1:83669932-83669951 | None:intergenic | 35.0% | |
| GCAATTTGAACAAAAAAGCG+GGG | - | chr4_1:83669968-83669987 | None:intergenic | 35.0% | |
| AAATAAGAGTGAATGGCATG+GGG | - | chr4_1:83669999-83670018 | None:intergenic | 35.0% | |
| CAAATAAGAGTGAATGGCAT+GGG | - | chr4_1:83670000-83670019 | None:intergenic | 35.0% | |
| ACAAATAAGAGTGAATGGCA+TGG | - | chr4_1:83670001-83670020 | None:intergenic | 35.0% | |
| AGCCCAACTAATTTGGTATT+GGG | - | chr4_1:83670138-83670157 | None:intergenic | 35.0% | |
| TAGCCCAACTAATTTGGTAT+TGG | - | chr4_1:83670139-83670158 | None:intergenic | 35.0% | |
| ! | ATAGACTAGCCCAACTAATT+TGG | - | chr4_1:83670145-83670164 | None:intergenic | 35.0% |
| GTGTAACTCAAAGTAATGCA+AGG | + | chr4_1:83670416-83670435 | Msa0578990:intron | 35.0% | |
| GGTTTGTGATTTAACCATGT+AGG | + | chr4_1:83670469-83670488 | Msa0578990:intron | 35.0% | |
| ATTAAATTGAAGGGAGGACA+AGG | - | chr4_1:83670557-83670576 | None:intergenic | 35.0% | |
| TCCAAGATGTTTGTAAGTTC+AGG | + | chr4_1:83670675-83670694 | Msa0578990:intron | 35.0% | |
| TCCTGAACTTACAAACATCT+TGG | - | chr4_1:83670679-83670698 | None:intergenic | 35.0% | |
| TAACGTGACTATGGATTTGT+GGG | + | chr4_1:83670726-83670745 | Msa0578990:intron | 35.0% | |
| !! | TTAGTCTTGGTCTGTTTCAA+TGG | + | chr4_1:83670791-83670810 | Msa0578990:intron | 35.0% |
| ! | AAAAACTCCCAAAGTTGGTT+CGG | + | chr4_1:83670828-83670847 | Msa0578990:intron | 35.0% |
| GTCATGATACCAAATACCAT+TGG | - | chr4_1:83670873-83670892 | None:intergenic | 35.0% | |
| CCAAAAATTGTCAGGATCAA+AGG | - | chr4_1:83670941-83670960 | None:intergenic | 35.0% | |
| ! | CCTTTGATCCTGACAATTTT+TGG | + | chr4_1:83670938-83670957 | Msa0578990:intron | 35.0% |
| ! | TGTTTTCACTATAAAGCAGG+GGG | - | chr4_1:83671014-83671033 | None:intergenic | 35.0% |
| !! | GGTTGTTTTCACTATAAAGC+AGG | - | chr4_1:83671017-83671036 | None:intergenic | 35.0% |
| GGTTCTCATTACAGTGTTAA+TGG | + | chr4_1:83671089-83671108 | Msa0578990:intron | 35.0% | |
| TCCCTGCAATCTATTTATGT+GGG | + | chr4_1:83671257-83671276 | Msa0578990:intron | 35.0% | |
| ACCCACATAAATAGATTGCA+GGG | - | chr4_1:83671261-83671280 | None:intergenic | 35.0% | |
| GAACTAAACAAGGAAATTCC+TGG | - | chr4_1:83671365-83671384 | None:intergenic | 35.0% | |
| TTGACTGTGTGAACTAAACA+AGG | - | chr4_1:83671375-83671394 | None:intergenic | 35.0% | |
| TGAAGATATCATCATACCCA+AGG | - | chr4_1:83671533-83671552 | None:intergenic | 35.0% | |
| TGGGTATGATGATATCTTCA+AGG | + | chr4_1:83671533-83671552 | Msa0578990:intron | 35.0% | |
| GCAAGTAGCAAGTGATAAAT+AGG | + | chr4_1:83671782-83671801 | Msa0578990:intron | 35.0% | |
| TTGTTCAGCCAAACATGTAT+TGG | + | chr4_1:83671950-83671969 | Msa0578990:CDS | 35.0% | |
| CTAGATATATCATGCCAAAG+GGG | - | chr4_1:83672021-83672040 | None:intergenic | 35.0% | |
| GCTAGATATATCATGCCAAA+GGG | - | chr4_1:83672022-83672041 | None:intergenic | 35.0% | |
| AGCTAGATATATCATGCCAA+AGG | - | chr4_1:83672023-83672042 | None:intergenic | 35.0% | |
| !!! | TCCTTTTTTTTTCTCCTTGC+AGG | + | chr4_1:83672090-83672109 | Msa0578990:intron | 35.0% |
| !!! | CCTTTTTTTTTCTCCTTGCA+GGG | + | chr4_1:83672091-83672110 | Msa0578990:intron | 35.0% |
| !!! | CTTTTTTTTTCTCCTTGCAG+GGG | + | chr4_1:83672092-83672111 | Msa0578990:intron | 35.0% |
| GTCTAAGTAAGACATCTTAC+CGG | - | chr4_1:83672392-83672411 | None:intergenic | 35.0% | |
| CTTACTTAGACTTCAGACAT+AGG | + | chr4_1:83672401-83672420 | Msa0578990:intron | 35.0% | |
| CCATAAGGCATAAACTATGA+AGG | - | chr4_1:83672454-83672473 | None:intergenic | 35.0% | |
| CCTTCATAGTTTATGCCTTA+TGG | + | chr4_1:83672451-83672470 | Msa0578990:intron | 35.0% | |
| TCAAGTTACAGGCTGATAAA+GGG | + | chr4_1:83672640-83672659 | Msa0578990:CDS | 35.0% | |
| ! | TTTTGTTCGGTTTCAATGCT+TGG | - | chr4_1:83672669-83672688 | None:intergenic | 35.0% |
| CAGGAAACACACTAGGAATT+GGG | - | chr4_1:83669529-83669548 | None:intergenic | 40.0% | |
| TTGTTACCAGGAAACACACT+AGG | - | chr4_1:83669536-83669555 | None:intergenic | 40.0% | |
| TCAGACAAGCAAGCTTCATT+TGG | - | chr4_1:83669638-83669657 | None:intergenic | 40.0% | |
| ! | AAGCTTGCTTGTCTGATTTC+TGG | + | chr4_1:83669642-83669661 | Msa0578990:CDS | 40.0% |
| ! | CTAGAGAGGTGCATAATTCA+AGG | - | chr4_1:83670098-83670117 | None:intergenic | 40.0% |
| CTTGAATTATGCACCTCTCT+AGG | + | chr4_1:83670096-83670115 | Msa0578990:intron | 40.0% | |
| TCCCCCAATACCAAATTAGT+TGG | + | chr4_1:83670132-83670151 | Msa0578990:intron | 40.0% | |
| ! | CCCAACTAATTTGGTATTGG+GGG | - | chr4_1:83670136-83670155 | None:intergenic | 40.0% |
| CCCCCAATACCAAATTAGTT+GGG | + | chr4_1:83670133-83670152 | Msa0578990:intron | 40.0% | |
| GCCCAACTAATTTGGTATTG+GGG | - | chr4_1:83670137-83670156 | None:intergenic | 40.0% | |
| TAAGGACTGACTAATCCGAA+GGG | - | chr4_1:83670215-83670234 | None:intergenic | 40.0% | |
| TAAAACTCAGTATCCGGCTA+AGG | - | chr4_1:83670233-83670252 | None:intergenic | 40.0% | |
| TTCAACGAGTCATTTGCCAA+GGG | - | chr4_1:83670602-83670621 | None:intergenic | 40.0% | |
| TTTCAACGAGTCATTTGCCA+AGG | - | chr4_1:83670603-83670622 | None:intergenic | 40.0% | |
| GTAACGTGACTATGGATTTG+TGG | + | chr4_1:83670725-83670744 | Msa0578990:intron | 40.0% | |
| ! | GCTTTTGCAACAGATGTTGA+TGG | - | chr4_1:83670992-83671011 | None:intergenic | 40.0% |
| !!! | AATGGCCTTTTAGCTTGTAG+AGG | + | chr4_1:83671107-83671126 | Msa0578990:intron | 40.0% |
| TAAGGCCTCTACAAGCTAAA+AGG | - | chr4_1:83671115-83671134 | None:intergenic | 40.0% | |
| !! | ACGAACAAGACTTTAAGGCT+CGG | - | chr4_1:83671207-83671226 | None:intergenic | 40.0% |
| AAGCCACGAACAAGACTTTA+AGG | - | chr4_1:83671212-83671231 | None:intergenic | 40.0% | |
| AGATTGCAGGGACAAATACT+TGG | - | chr4_1:83671249-83671268 | None:intergenic | 40.0% | |
| GTCCCTGCAATCTATTTATG+TGG | + | chr4_1:83671256-83671275 | Msa0578990:intron | 40.0% | |
| GACCCACATAAATAGATTGC+AGG | - | chr4_1:83671262-83671281 | None:intergenic | 40.0% | |
| AACAAGGAAATTCCTGGTGA+AGG | - | chr4_1:83671359-83671378 | None:intergenic | 40.0% | |
| CTCTCAATCAATCAGCATCA+GGG | - | chr4_1:83671445-83671464 | None:intergenic | 40.0% | |
| TCTCTCAATCAATCAGCATC+AGG | - | chr4_1:83671446-83671465 | None:intergenic | 40.0% | |
| ! | TGCTGATTGATTGAGAGAGA+CGG | + | chr4_1:83671448-83671467 | Msa0578990:intron | 40.0% |
| TGTTCGCCTTACGATACATA+TGG | - | chr4_1:83671488-83671507 | None:intergenic | 40.0% | |
| CTGATGAGTTAGCAAACCTT+GGG | + | chr4_1:83671514-83671533 | Msa0578990:intron | 40.0% | |
| ATAGCTAACTAGCTAAGCGA+GGG | - | chr4_1:83671609-83671628 | None:intergenic | 40.0% | |
| AATAGCTAACTAGCTAAGCG+AGG | - | chr4_1:83671610-83671629 | None:intergenic | 40.0% | |
| TTGGAAAATCCCAGTTCAAG+AGG | + | chr4_1:83671663-83671682 | Msa0578990:intron | 40.0% | |
| TAGACAAGATCTCCATACTC+AGG | + | chr4_1:83671746-83671765 | Msa0578990:intron | 40.0% | |
| TGAACAATGTTGCTCCTCTT+TGG | - | chr4_1:83671937-83671956 | None:intergenic | 40.0% | |
| CGTGACATCCAATACATGTT+TGG | - | chr4_1:83671961-83671980 | None:intergenic | 40.0% | |
| CCCTGCAAGGAGAAAAAAAA+AGG | - | chr4_1:83672094-83672113 | None:intergenic | 40.0% | |
| CCTAAGCTTAGCTAACCATA+AGG | - | chr4_1:83672469-83672488 | None:intergenic | 40.0% | |
| ! | CCTTATGGTTAGCTAAGCTT+AGG | + | chr4_1:83672466-83672485 | Msa0578990:intron | 40.0% |
| ! | AGTCATGTATAGTTCTACGC+AGG | + | chr4_1:83672530-83672549 | Msa0578990:intron | 40.0% |
| ! | GTCATGTATAGTTCTACGCA+GGG | + | chr4_1:83672531-83672550 | Msa0578990:intron | 40.0% |
| ! | TCATGTATAGTTCTACGCAG+GGG | + | chr4_1:83672532-83672551 | Msa0578990:intron | 40.0% |
| GTCAAGTTACAGGCTGATAA+AGG | + | chr4_1:83672639-83672658 | Msa0578990:CDS | 40.0% | |
| CCAGGAAACACACTAGGAAT+TGG | - | chr4_1:83669530-83669549 | None:intergenic | 45.0% | |
| CCAATTCCTAGTGTGTTTCC+TGG | + | chr4_1:83669527-83669546 | Msa0578990:five_prime_UTR | 45.0% | |
| GGTGCATAATTCAAGGTCAC+AGG | - | chr4_1:83670091-83670110 | None:intergenic | 45.0% | |
| ATGAAACCTCAGACCTAGAG+AGG | - | chr4_1:83670112-83670131 | None:intergenic | 45.0% | |
| CTAAGGACTGACTAATCCGA+AGG | - | chr4_1:83670216-83670235 | None:intergenic | 45.0% | |
| GTCATTTGCCAAGGGAGTTT+GGG | - | chr4_1:83670594-83670613 | None:intergenic | 45.0% | |
| AGTCATTTGCCAAGGGAGTT+TGG | - | chr4_1:83670595-83670614 | None:intergenic | 45.0% | |
| GAGGGATTGTAACGTGACTA+TGG | + | chr4_1:83670717-83670736 | Msa0578990:intron | 45.0% | |
| ATCCGATCCGAACCAACTTT+GGG | - | chr4_1:83670838-83670857 | None:intergenic | 45.0% | |
| !! | TGGCATTGGCCAATGGTATT+TGG | + | chr4_1:83670861-83670880 | Msa0578990:intron | 45.0% |
| ! | TTTACACAGCCAGCTTGCTT+TGG | + | chr4_1:83670965-83670984 | Msa0578990:intron | 45.0% |
| ! | TTACCAAGGATTCTGAGGGT+CGG | + | chr4_1:83671132-83671151 | Msa0578990:intron | 45.0% |
| ! | TCTGAGGGTCGGTTTATTTG+TGG | + | chr4_1:83671143-83671162 | Msa0578990:intron | 45.0% |
| TGTGGCTTCGTTTGTATCCT+TGG | + | chr4_1:83671161-83671180 | Msa0578990:intron | 45.0% | |
| !! | GAGCCTTAAAGTCTTGTTCG+TGG | + | chr4_1:83671206-83671225 | Msa0578990:intron | 45.0% |
| CAGGGACAAATACTTGGTTC+TGG | - | chr4_1:83671243-83671262 | None:intergenic | 45.0% | |
| GCTGATGAGTTAGCAAACCT+TGG | + | chr4_1:83671513-83671532 | Msa0578990:intron | 45.0% | |
| TGTATTGGATGTCACGATGC+AGG | + | chr4_1:83671965-83671984 | Msa0578990:CDS | 45.0% | |
| GGGGTCAACTCTATTCACAA+AGG | + | chr4_1:83672111-83672130 | Msa0578990:intron | 45.0% | |
| ATCTACCGTGTCACGTACTA+TGG | + | chr4_1:83672353-83672372 | Msa0578990:CDS | 45.0% | |
| CTTTGCCATAGTACGTGACA+CGG | - | chr4_1:83672361-83672380 | None:intergenic | 45.0% | |
| CTATGGCAAAGGAAGAATGC+CGG | + | chr4_1:83672370-83672389 | Msa0578990:CDS | 45.0% | |
| ! | TATAGTTCTACGCAGGGGTT+TGG | + | chr4_1:83672537-83672556 | Msa0578990:intron | 45.0% |
| GGCTGAGTTTGTCAAGTTAC+AGG | + | chr4_1:83672629-83672648 | Msa0578990:CDS | 45.0% | |
| AGTTACAGGCTGATAAAGGG+TGG | + | chr4_1:83672643-83672662 | Msa0578990:CDS | 45.0% | |
| TTGCGGTCCAGAAGAGTTAT+TGG | - | chr4_1:83672820-83672839 | None:intergenic | 45.0% | |
| GCGTGCGTATCTCAGATAGA+TGG | - | chr4_1:83669588-83669607 | None:intergenic | 50.0% | |
| AAGAGGTAACCAACCTGGAG+TGG | - | chr4_1:83669927-83669946 | None:intergenic | 50.0% | |
| TATGCACCTCTCTAGGTCTG+AGG | + | chr4_1:83670103-83670122 | Msa0578990:intron | 50.0% | |
| !! | CGGATTAGTCAGTCCTTAGC+CGG | + | chr4_1:83670217-83670236 | Msa0578990:intron | 50.0% |
| TCTCATTGTGCTGCACAGAC+TGG | - | chr4_1:83670520-83670539 | None:intergenic | 50.0% | |
| ATGGTAAGCCCAAACTCCCT+TGG | + | chr4_1:83670583-83670602 | Msa0578990:intron | 50.0% | |
| !! | CTCCCAAAGTTGGTTCGGAT+CGG | + | chr4_1:83670833-83670852 | Msa0578990:intron | 50.0% |
| GATCCGATCCGAACCAACTT+TGG | - | chr4_1:83670839-83670858 | None:intergenic | 50.0% | |
| ! | GTTGATGGACCAAAGCAAGC+TGG | - | chr4_1:83670977-83670996 | None:intergenic | 50.0% |
| AGCTTGTAGAGGCCTTACCA+AGG | + | chr4_1:83671118-83671137 | Msa0578990:intron | 50.0% | |
| AGGCCTTACCAAGGATTCTG+AGG | + | chr4_1:83671127-83671146 | Msa0578990:intron | 50.0% | |
| GGCCTTACCAAGGATTCTGA+GGG | + | chr4_1:83671128-83671147 | Msa0578990:intron | 50.0% | |
| GACCCTCAGAATCCTTGGTA+AGG | - | chr4_1:83671133-83671152 | None:intergenic | 50.0% | |
| AAACCGACCCTCAGAATCCT+TGG | - | chr4_1:83671138-83671157 | None:intergenic | 50.0% | |
| ATTGGATGTCACGATGCAGG+TGG | + | chr4_1:83671968-83671987 | Msa0578990:CDS | 50.0% | |
| CCAAAGGGGATGATGCTTAC+TGG | - | chr4_1:83672007-83672026 | None:intergenic | 50.0% | |
| CCAGTAAGCATCATCCCCTT+TGG | + | chr4_1:83672004-83672023 | Msa0578990:intron | 50.0% | |
| GAATAGAGTTGACCCCTGCA+AGG | - | chr4_1:83672107-83672126 | None:intergenic | 50.0% | |
| CGTGTCACGTACTATGGCAA+AGG | + | chr4_1:83672359-83672378 | Msa0578990:CDS | 50.0% | |
| ! | GTAAAGAGTGCATGCCACGA+GGG | + | chr4_1:83672559-83672578 | Msa0578990:CDS | 50.0% |
| !! | GTGCACATTTGGTGCTCGTT+TGG | + | chr4_1:83672584-83672603 | Msa0578990:CDS | 50.0% |
| CAACTTGGCTCCTCCTCTTG+CGG | + | chr4_1:83669871-83669890 | Msa0578990:CDS | 55.0% | |
| TCTCCAATTTGCGCCACTCC+AGG | + | chr4_1:83669911-83669930 | Msa0578990:CDS | 55.0% | |
| CAACCTGGAGTGGCGCAAAT+TGG | - | chr4_1:83669917-83669936 | None:intergenic | 55.0% | |
| CAATTTGCGCCACTCCAGGT+TGG | + | chr4_1:83669915-83669934 | Msa0578990:intron | 55.0% | |
| AATCCCACCGTCCACTTGTG+GGG | - | chr4_1:83670189-83670208 | None:intergenic | 55.0% | |
| CAATCCCACCGTCCACTTGT+GGG | - | chr4_1:83670190-83670209 | None:intergenic | 55.0% | |
| !! | GTTGGTTCGGATCGGATCAG+TGG | + | chr4_1:83670841-83670860 | Msa0578990:intron | 55.0% |
| TCGGATCGGATCAGTGGCAT+TGG | + | chr4_1:83670847-83670866 | Msa0578990:intron | 55.0% | |
| !! | GGATCAGTGGCATTGGCCAA+TGG | + | chr4_1:83670854-83670873 | Msa0578990:intron | 55.0% |
| ! | GGTAAAGAGTGCATGCCACG+AGG | + | chr4_1:83672558-83672577 | Msa0578990:CDS | 55.0% |
| AGAAAGGCAGCCGCAAGAGG+AGG | - | chr4_1:83669884-83669903 | None:intergenic | 60.0% | |
| AGCAGAAAGGCAGCCGCAAG+AGG | - | chr4_1:83669887-83669906 | None:intergenic | 60.0% | |
| TTGAATGGGCCCCCCACAAG+TGG | + | chr4_1:83670175-83670194 | Msa0578990:intron | 60.0% | |
| ATCCCACCGTCCACTTGTGG+GGG | - | chr4_1:83670188-83670207 | None:intergenic | 60.0% | |
| CCAATCCCACCGTCCACTTG+TGG | - | chr4_1:83670191-83670210 | None:intergenic | 60.0% | |
| CCACAAGTGGACGGTGGGAT+TGG | + | chr4_1:83670188-83670207 | Msa0578990:intron | 60.0% | |
| GACGGTGGGATTGGACCCTT+CGG | + | chr4_1:83670197-83670216 | Msa0578990:intron | 60.0% | |
| CCAAATGTGCACTGCCCTCG+TGG | - | chr4_1:83672576-83672595 | None:intergenic | 60.0% | |
| CCACGAGGGCAGTGCACATT+TGG | + | chr4_1:83672573-83672592 | Msa0578990:CDS | 60.0% | |
| ATGGGCCCCCCACAAGTGGA+CGG | + | chr4_1:83670179-83670198 | Msa0578990:intron | 65.0% | |
| TCCCACCGTCCACTTGTGGG+GGG | - | chr4_1:83670187-83670206 | None:intergenic | 65.0% | |
| GCCCCCCACAAGTGGACGGT+GGG | + | chr4_1:83670183-83670202 | Msa0578990:intron | 70.0% | |
| GGCCCCCCACAAGTGGACGG+TGG | + | chr4_1:83670182-83670201 | Msa0578990:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 83669503 | 83672887 | 83669503 | ID=Msa0578990;Name=Msa0578990 |
| chr4_1 | mRNA | 83669503 | 83672887 | 83669503 | ID=Msa0578990-mRNA-1;Parent=Msa0578990;Name=Msa0578990-mRNA-1;_AED=0.19;_eAED=0.19;_QI=136|1|1|1|1|1|6|195|173 |
| chr4_1 | exon | 83669503 | 83669689 | 83669503 | ID=Msa0578990-mRNA-1:exon:30505;Parent=Msa0578990-mRNA-1 |
| chr4_1 | exon | 83669797 | 83669932 | 83669797 | ID=Msa0578990-mRNA-1:exon:30506;Parent=Msa0578990-mRNA-1 |
| chr4_1 | exon | 83671909 | 83672006 | 83671909 | ID=Msa0578990-mRNA-1:exon:30507;Parent=Msa0578990-mRNA-1 |
| chr4_1 | exon | 83672112 | 83672143 | 83672112 | ID=Msa0578990-mRNA-1:exon:30508;Parent=Msa0578990-mRNA-1 |
| chr4_1 | exon | 83672328 | 83672391 | 83672328 | ID=Msa0578990-mRNA-1:exon:30509;Parent=Msa0578990-mRNA-1 |
| chr4_1 | exon | 83672552 | 83672887 | 83672552 | ID=Msa0578990-mRNA-1:exon:30510;Parent=Msa0578990-mRNA-1 |
| chr4_1 | five_prime_UTR | 83669503 | 83669638 | 83669503 | ID=Msa0578990-mRNA-1:five_prime_utr;Parent=Msa0578990-mRNA-1 |
| chr4_1 | CDS | 83669639 | 83669689 | 83669639 | ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1 |
| chr4_1 | CDS | 83669797 | 83669932 | 83669797 | ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1 |
| chr4_1 | CDS | 83671909 | 83672006 | 83671909 | ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1 |
| chr4_1 | CDS | 83672112 | 83672143 | 83672112 | ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1 |
| chr4_1 | CDS | 83672328 | 83672391 | 83672328 | ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1 |
| chr4_1 | CDS | 83672552 | 83672692 | 83672552 | ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1 |
| chr4_1 | three_prime_UTR | 83672693 | 83672887 | 83672693 | ID=Msa0578990-mRNA-1:three_prime_utr;Parent=Msa0578990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
