AlfalfaGEDB | Msa0578990

M. sativa cultivar zhongmu-4 / Msa0578990

KEGG: K08906
GO: -
PFAM: PF13442.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0578990	XP_003607878.1	98.844	173	2	0	1	173	1	173	7.34e-124	356

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0578990	sp\|Q93VA3\|CYC6_ARATH	73.485	132	35	0	40	171	44	175	7.71e-73	219

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0578990	A2Q293	98.844	173	2	0	1	173	1	173	3.51e-124	356

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017980	Msa0578990	0.801724	7.866867e-49	-8.615850e-47
Msa0024070	Msa0578990	0.828859	7.112396e-55	-8.615850e-47
Msa0025340	Msa0578990	0.817397	3.369297e-52	-8.615850e-47
Msa0028410	Msa0578990	0.820133	8.055138e-53	-8.615850e-47
Msa0028450	Msa0578990	0.801708	7.927962e-49	-8.615850e-47
Msa0030710	Msa0578990	0.809374	1.952721e-50	-8.615850e-47
Msa0044700	Msa0578990	0.809669	1.687708e-50	-8.615850e-47
Msa0045530	Msa0578990	0.805585	1.243404e-49	-8.615850e-47
Msa0046090	Msa0578990	0.808188	3.501400e-50	-8.615850e-47
Msa0052180	Msa0578990	0.807172	5.756112e-50	-8.615850e-47

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0578990	MtrunA17_Chr4g0043621	98.844	173	2	0	1	173	1	173	6.75e-128	356

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0578990	AT5G45040.1	73.485	132	35	0	40	171	44	175	7.84e-74	219

Showing 1 to 1 of 1 entries

Previous1Next

Find 50 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTATGGCAGGTAACA+TGG	0.498173	4_1:+83669489	None:intergenic
AAGAGGTAACCAACCTGGAG+TGG	0.599652	4_1:-83669924	None:intergenic
AAGCTTGCTTGTCTGATTTC+TGG	0.156602	4_1:+83669642	Msa0578990:CDS
AATTGGAGAAAATAGCAGAA+AGG	0.628466	4_1:-83669897	None:intergenic
ACCAATCCATAATGAAAAGA+TGG	0.486136	4_1:-83672715	None:intergenic
AGAAAGGCAGCCGCAAGAGG+AGG	0.570107	4_1:-83669881	None:intergenic
AGATGAAGATATCAAGATAT+TGG	0.420639	4_1:+83672608	Msa0578990:CDS
AGCAGAAAGGCAGCCGCAAG+AGG	0.590194	4_1:-83669884	None:intergenic
AGTATAATGCACTTGTTACC+AGG	0.530229	4_1:-83669545	None:intergenic
AGTTACAGGCTGATAAAGGG+TGG	0.682583	4_1:+83672643	Msa0578990:CDS

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATATTATATTGTGAGGCTG+AGG	-	chr4_1:83669756-83669775	None:intergenic	30.0%
AATTGGAGAAAATAGCAGAA+AGG	-	chr4_1:83669900-83669919	None:intergenic	30.0%
AGCAATTTGAACAAAAAAGC+GGG	-	chr4_1:83669969-83669988	None:intergenic	30.0%
GAGCAATTTGAACAAAAAAG+CGG	-	chr4_1:83669970-83669989	None:intergenic	30.0%
TTGTACAAACTAGAAAGTAG+TGG	+	chr4_1:83670052-83670071	Msa0578990:intron	30.0%
AAACTGTAAAGAACCATCTT+AGG	+	chr4_1:83670448-83670467	Msa0578990:intron	30.0%
GTTAAATCACAAACCTAAGA+TGG	-	chr4_1:83670464-83670483	None:intergenic	30.0%
TAATGTTCAAAGATCCTACA+TGG	-	chr4_1:83670486-83670505	None:intergenic	30.0%
TGGACATACATTAGGAATTT+AGG	-	chr4_1:83670659-83670678	None:intergenic	30.0%
AAACATCTTGGACATACATT+AGG	-	chr4_1:83670667-83670686	None:intergenic	30.0%

Showing 1 to 10 of 243 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	83669503	83672887	83669503	ID=Msa0578990;Name=Msa0578990
chr4_1	mRNA	83669503	83672887	83669503	ID=Msa0578990-mRNA-1;Parent=Msa0578990;Name=Msa0578990-mRNA-1;_AED=0.19;_eAED=0.19;_QI=136\|1\|1\|1\|1\|1\|6\|195\|173
chr4_1	exon	83669503	83669689	83669503	ID=Msa0578990-mRNA-1:exon:30505;Parent=Msa0578990-mRNA-1
chr4_1	exon	83669797	83669932	83669797	ID=Msa0578990-mRNA-1:exon:30506;Parent=Msa0578990-mRNA-1
chr4_1	exon	83671909	83672006	83671909	ID=Msa0578990-mRNA-1:exon:30507;Parent=Msa0578990-mRNA-1
chr4_1	exon	83672112	83672143	83672112	ID=Msa0578990-mRNA-1:exon:30508;Parent=Msa0578990-mRNA-1
chr4_1	exon	83672328	83672391	83672328	ID=Msa0578990-mRNA-1:exon:30509;Parent=Msa0578990-mRNA-1
chr4_1	exon	83672552	83672887	83672552	ID=Msa0578990-mRNA-1:exon:30510;Parent=Msa0578990-mRNA-1
chr4_1	five_prime_UTR	83669503	83669638	83669503	ID=Msa0578990-mRNA-1:five_prime_utr;Parent=Msa0578990-mRNA-1
chr4_1	CDS	83669639	83669689	83669639	ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1
chr4_1	CDS	83669797	83669932	83669797	ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1
chr4_1	CDS	83671909	83672006	83671909	ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1
chr4_1	CDS	83672112	83672143	83672112	ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1
chr4_1	CDS	83672328	83672391	83672328	ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1
chr4_1	CDS	83672552	83672692	83672552	ID=Msa0578990-mRNA-1:cds;Parent=Msa0578990-mRNA-1
chr4_1	three_prime_UTR	83672693	83672887	83672693	ID=Msa0578990-mRNA-1:three_prime_utr;Parent=Msa0578990-mRNA-1

Gene Sequence

>Msa0578990

ATGAAGCTTGCTTGTCTGATTTCTGGTTACAATAATCCTGTCTCCATAAAGGATAACGTGAAACGGGAAGAGAAGCATGTGAAGCTCATTCATACTAAGACAAAACAACAAGTCAAGTTTTTCAACAACTTGGCTCCTCCTCTTGCGGCTGCCTTTCTGCTATTTTCTCCAATTTGCGCCACTCCAGTTTCAATTGCCCAAACAATAGATATCCAAAGAGGAGCAACATTGTTCAGCCAAACATGTATTGGATGTCACGATGCAGGTGGAAACATTATACAGCCAGGGTCAACTCTATTCACAAAGGATTTACAAAGAAATGGAGTTGATACAGAAGAAGAAATCTACCGTGTCACGTACTATGGCAAAGGAAGAATGCCGGGGTTTGGTAAAGAGTGCATGCCACGAGGGCAGTGCACATTTGGTGCTCGTTTGGAAGATGAAGATATCAAGATATTGGCTGAGTTTGTCAAGTTACAGGCTGATAAAGGGTGGCCAAGCATTGAAACCGAACAAAAATGA

Protein sequence

>Msa0578990

MKLACLISGYNNPVSIKDNVKREEKHVKLIHTKTKQQVKFFNNLAPPLAAAFLLFSPICATPVSIAQTIDIQRGATLFSQTCIGCHDAGGNIIQPGSTLFTKDLQRNGVDTEEEIYRVTYYGKGRMPGFGKECMPRGQCTFGARLEDEDIKILAEFVKLQADKGWPSIETEQK*