AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222020 MtrunA17_Chr4g0073071 95.804 143 5 1 3 145 2 143 5.55e-99 280
Msa1222020 MtrunA17_Chr4g0073051 81.132 53 10 0 73 125 1 53 5.60e-24 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222020 AT4G28025.1 55.147 136 55 3 13 143 19 153 1.34e-42 139
Msa1222020 AT4G28025.2 54.815 135 48 2 13 143 19 144 3.55e-42 137

Find 58 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATTAATTGCCTCAATT+TGG 0.217949 8_1:+86170653 None:intergenic
CCGATTGTTGTTGCTTGATA+TGG 0.260980 8_1:-86169926 Msa1222020:three_prime_UTR
TGCTTGACTCTGGGTTCTAT+TGG 0.273238 8_1:+86171520 None:intergenic
TTTGTGAATATATTTGTTAA+AGG 0.278243 8_1:-86170068 Msa1222020:three_prime_UTR
CGCCAAATTGAGGCAATTAA+TGG 0.290415 8_1:-86170655 Msa1222020:CDS
TTGTTAAAGGTTTACTGATA+AGG 0.351493 8_1:-86170055 Msa1222020:three_prime_UTR
GAAAGATTAAGTTGATTAGA+TGG 0.354541 8_1:-86169823 Msa1222020:three_prime_UTR
GGAAGGGAATTGAGCGTTGT+TGG 0.358874 8_1:+86172512 None:intergenic
ATAGAAAGCAGAAAAGAAGT+TGG 0.362107 8_1:-86172592 Msa1222020:five_prime_UTR
CTTAATCTTTCTTCACAGTA+AGG 0.378715 8_1:+86169835 None:intergenic
AATAAGTAGCGAAAATTGTA+TGG 0.384156 8_1:+86170013 None:intergenic
AATTGAGCGTTGTTGGATAG+AGG 0.398480 8_1:+86172519 None:intergenic
CTAGTTATTGAAGGTCAAAC+TGG 0.408273 8_1:-86170601 Msa1222020:CDS
GTTACATATGTAGCATTGAT+AGG 0.417228 8_1:+86169978 None:intergenic
TTTAATTATCTCCATTTGTT+CGG 0.418482 8_1:+86170794 None:intergenic
GTAGCGAAAATTGTATGGTT+TGG 0.419912 8_1:+86170018 None:intergenic
AATGGAGCTTGGGCAATGAT+TGG 0.426888 8_1:-86170637 Msa1222020:CDS
GCGATTGGCTGCCGAACAAA+TGG 0.433796 8_1:-86170805 Msa1222020:CDS
TCTCAGCTGCAAGACTACTT+TGG 0.437019 8_1:-86170175 Msa1222020:intron
TTGAGGCAATTAATGGAGCT+TGG 0.452490 8_1:-86170648 Msa1222020:CDS
TGAGGCAATTAATGGAGCTT+GGG 0.452983 8_1:-86170647 Msa1222020:CDS
TAGAAAGCAGAAAAGAAGTT+GGG 0.458823 8_1:-86172591 Msa1222020:five_prime_UTR
ATAATTATACAGGTATCTTC+AGG 0.464483 8_1:-86170879 Msa1222020:intron
CCATATCAAGCAACAACAAT+CGG 0.488739 8_1:+86169926 None:intergenic
GGACTCGAAATGCTTGACTC+TGG 0.489914 8_1:+86171510 None:intergenic
GCCAATCGCTTGGCTTCCAC+AGG 0.490320 8_1:+86170819 None:intergenic
AAAGCGAAGGTGTGAGCAAT+GGG 0.491935 8_1:-86172561 Msa1222020:exon
TGGTGGGTGTGATGAAAGGA+AGG 0.494555 8_1:+86172495 None:intergenic
TTAATCTTTCTTCACAGTAA+GGG 0.497494 8_1:+86169836 None:intergenic
TGCATACATTGGGATTAGCT+AGG 0.502437 8_1:+86171489 None:intergenic
TAATCTTTCTTCACAGTAAG+GGG 0.505362 8_1:+86169837 None:intergenic
TGAAATTACTTGGCGGTGGT+CGG 0.516726 8_1:+86172465 None:intergenic
TGTGAAGTAGACAGCCGAAA+AGG 0.518778 8_1:-86170134 Msa1222020:exon
TTGTTCGGCAGCCAATCGCT+TGG 0.519239 8_1:+86170809 None:intergenic
GACTCGAAATGCTTGACTCT+GGG 0.527834 8_1:+86171511 None:intergenic
ACAGCGGGTCTAGTTATTGA+AGG 0.529878 8_1:-86170610 Msa1222020:CDS
AGCAGAAAAGAAGTTGGGAA+AGG 0.539758 8_1:-86172586 Msa1222020:five_prime_UTR
TAAAGCGAAGGTGTGAGCAA+TGG 0.554147 8_1:-86172562 Msa1222020:exon
GTTGTTGGATAGAGGAAGAG+TGG 0.561270 8_1:+86172527 None:intergenic
CAGGTATCTTCAGGAAAGGA+TGG 0.562970 8_1:-86170870 Msa1222020:CDS
TGGAGAAGAGAGCAATATGC+TGG 0.566450 8_1:-86171551 Msa1222020:CDS
CGGTGGTCGGAAAAGAGTGG+TGG 0.568189 8_1:+86172478 None:intergenic
AACAATAAATGCCACCACCT+CGG 0.568872 8_1:+86169880 None:intergenic
GGCAATGATTGGTCTAACAG+CGG 0.572593 8_1:-86170626 Msa1222020:CDS
AAGAGAGCAATATGCTGGCA+TGG 0.578828 8_1:-86171546 Msa1222020:CDS
GTAGAAAAGACGCCAAATTG+AGG 0.581143 8_1:-86170665 Msa1222020:intron
AGAGTGGTGGGTGTGATGAA+AGG 0.588914 8_1:+86172491 None:intergenic
GCAATGATTGGTCTAACAGC+GGG 0.589959 8_1:-86170625 Msa1222020:CDS
TCCTGTGGAAGCCAAGCGAT+TGG 0.590043 8_1:-86170820 Msa1222020:CDS
TAGACAGCCGAAAAGGAGCA+TGG 0.595353 8_1:-86170127 Msa1222020:three_prime_UTR
TGTAGCATTGATAGGCAACA+AGG 0.603035 8_1:+86169986 None:intergenic
GGTGGTCGGAAAAGAGTGGT+GGG 0.609303 8_1:+86172479 None:intergenic
TATACAGGTATCTTCAGGAA+AGG 0.610775 8_1:-86170874 Msa1222020:intron
AGAGTGAAATTACTTGGCGG+TGG 0.619832 8_1:+86172461 None:intergenic
TGTAATCATGGTTGATCCTG+TGG 0.620604 8_1:-86170835 Msa1222020:CDS
GTTGGGAAAGGATAAAGCGA+AGG 0.628301 8_1:-86172574 Msa1222020:five_prime_UTR
TGGCGGTGGTCGGAAAAGAG+TGG 0.650155 8_1:+86172475 None:intergenic
GGTGGGTGTGATGAAAGGAA+GGG 0.678716 8_1:+86172496 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACATTAAAGTAATAAA+TGG - chr8_1:86170650-86170669 Msa1222020:CDS 10.0%
!! ATAAAATAACCATCAATAAT+AGG + chr8_1:86170100-86170119 None:intergenic 15.0%
!! ATATAAATAATAAACCACAA+TGG - chr8_1:86170688-86170707 Msa1222020:intron 15.0%
!! AAATTAGAAAAAATACAGAT+TGG + chr8_1:86171972-86171991 None:intergenic 15.0%
!!! ATTTTATTAAAGTAAACCAA+AGG - chr8_1:86171994-86172013 Msa1222020:intron 15.0%
!!! TTTGTGAATATATTTGTTAA+AGG - chr8_1:86172341-86172360 Msa1222020:intron 15.0%
!! TAATTTGAGAATAGAAGATT+CGG - chr8_1:86170054-86170073 Msa1222020:three_prime_UTR 20.0%
!!! TGATGGTTATTTTATAAAGT+AGG - chr8_1:86170105-86170124 Msa1222020:three_prime_UTR 20.0%
!!! CTTTAAAAAATAGATAGACA+AGG + chr8_1:86170139-86170158 None:intergenic 20.0%
!! TATAAATTTGTATTCCATTG+TGG + chr8_1:86170705-86170724 None:intergenic 20.0%
!! TAATTAGCAATAACAAAACA+AGG + chr8_1:86170807-86170826 None:intergenic 20.0%
!!! TTTTATGTTGAAAACTATCT+AGG - chr8_1:86171019-86171038 Msa1222020:intron 20.0%
!!! GAATTTATTTTGTCATAGAA+AGG + chr8_1:86171452-86171471 None:intergenic 20.0%
!! AGATCTACATATAATTATAC+AGG - chr8_1:86171520-86171539 Msa1222020:CDS 20.0%
!! TTTAATTATCTCCATTTGTT+CGG + chr8_1:86171618-86171637 None:intergenic 20.0%
!!! TCTCAAATTCATGTTTTTTG+AGG - chr8_1:86169989-86170008 Msa1222020:three_prime_UTR 25.0%
! AATTTGAGAATAGAAGATTC+GGG - chr8_1:86170055-86170074 Msa1222020:three_prime_UTR 25.0%
!! AGTGTTATTCCTATTATTGA+TGG - chr8_1:86170088-86170107 Msa1222020:three_prime_UTR 25.0%
!! TCATAAAGTTTGCAAGTTTT+AGG - chr8_1:86170170-86170189 Msa1222020:CDS 25.0%
! AGATTATATTATCCTAACCA+AGG + chr8_1:86170206-86170225 None:intergenic 25.0%
!!! AGGATGCGTATTTTTTTTAA+TGG + chr8_1:86170398-86170417 None:intergenic 25.0%
! CTCAGAAAACTAAATTCTAA+AGG + chr8_1:86170418-86170437 None:intergenic 25.0%
!!! CTTTAGAATTTAGTTTTCTG+AGG - chr8_1:86170416-86170435 Msa1222020:intron 25.0%
! GAAATCTAACAGATAATTGT+TGG - chr8_1:86170733-86170752 Msa1222020:intron 25.0%
! GTTCAATTTATGCATACATT+GGG + chr8_1:86170933-86170952 None:intergenic 25.0%
! TGTTCAATTTATGCATACAT+TGG + chr8_1:86170934-86170953 None:intergenic 25.0%
!! AAATATGTTGACTATAGCAT+AGG + chr8_1:86171125-86171144 None:intergenic 25.0%
! TCAAAATTTAAGAGGATAAC+AGG - chr8_1:86171187-86171206 Msa1222020:intron 25.0%
! ATAATTATACAGGTATCTTC+AGG - chr8_1:86171530-86171549 Msa1222020:CDS 25.0%
! TTCAAAAAAGGATGTAATCA+TGG - chr8_1:86171562-86171581 Msa1222020:intron 25.0%
! TAAAGCAAAAGAAAAACTCA+AGG - chr8_1:86171634-86171653 Msa1222020:intron 25.0%
! TTGTTAAAGGTTTACTGATA+AGG - chr8_1:86172354-86172373 Msa1222020:intron 25.0%
! AATAAGTAGCGAAAATTGTA+TGG + chr8_1:86172399-86172418 None:intergenic 25.0%
! TTAATCTTTCTTCACAGTAA+GGG + chr8_1:86172576-86172595 None:intergenic 25.0%
!!! GAAAGATTAAGTTGATTAGA+TGG - chr8_1:86172586-86172605 Msa1222020:five_prime_UTR 25.0%
TTGAGAAGAAAGAAGTGAAA+GGG + chr8_1:86169975-86169994 None:intergenic 30.0%
TTTGAGAAGAAAGAAGTGAA+AGG + chr8_1:86169976-86169995 None:intergenic 30.0%
ATTTGAGAATAGAAGATTCG+GGG - chr8_1:86170056-86170075 Msa1222020:three_prime_UTR 30.0%
AAATAGATAGACAAGGACAA+TGG + chr8_1:86170132-86170151 None:intergenic 30.0%
!!! TTTTAGGATTTACACAACCT+TGG - chr8_1:86170186-86170205 Msa1222020:intron 30.0%
AACAAAAGACCTATATACTC+CGG + chr8_1:86170470-86170489 None:intergenic 30.0%
AAAAGCTTCATGAATTCTCT+AGG - chr8_1:86170597-86170616 Msa1222020:CDS 30.0%
ATCGAAAAAATGACAGACAT+CGG + chr8_1:86170627-86170646 None:intergenic 30.0%
!! GATATTAACCTCGTTGTTTT+AGG - chr8_1:86170829-86170848 Msa1222020:CDS 30.0%
ACTGTGTATTTGTGTATTGT+TGG - chr8_1:86170953-86170972 Msa1222020:intron 30.0%
!! GGTTGACTTTTATATGAGAT+TGG - chr8_1:86170974-86170993 Msa1222020:intron 30.0%
!! ATATGAGATTGGTTGTTTCT+CGG - chr8_1:86170985-86171004 Msa1222020:intron 30.0%
TATCTAGGTATGATCTCAAA+TGG - chr8_1:86171034-86171053 Msa1222020:intron 30.0%
GCTATAGTCAACATATTTAC+TGG - chr8_1:86171127-86171146 Msa1222020:intron 30.0%
GCACAAAAATACAAATGTAC+AGG - chr8_1:86171149-86171168 Msa1222020:intron 30.0%
TGGTAGGTTCAAAATTTAAG+AGG - chr8_1:86171179-86171198 Msa1222020:intron 30.0%
TTTAAGAGGATAACAGGATA+TGG - chr8_1:86171193-86171212 Msa1222020:intron 30.0%
AGTGGGAATTATAGACTTAT+AGG - chr8_1:86171265-86171284 Msa1222020:intron 30.0%
! TTTTGTCATAGAAAGGTAGA+AGG + chr8_1:86171445-86171464 None:intergenic 30.0%
ATGAAAAGAAAACCGCAAAA+GGG + chr8_1:86171488-86171507 None:intergenic 30.0%
AATGAAAAGAAAACCGCAAA+AGG + chr8_1:86171489-86171508 None:intergenic 30.0%
GGTAAGTTTATAGTAAACTG+AGG + chr8_1:86171707-86171726 None:intergenic 30.0%
CTACAATCACAACATAAAGT+TGG + chr8_1:86171728-86171747 None:intergenic 30.0%
TGGAAAAAATATCATTACCC+AGG - chr8_1:86171828-86171847 Msa1222020:intron 30.0%
TAAACTCATACAGACATATG+TGG - chr8_1:86171911-86171930 Msa1222020:intron 30.0%
! TCACACAATCTTTTAGCAAT+TGG + chr8_1:86172042-86172061 None:intergenic 30.0%
CTTTCATTGCTTCCATTATT+TGG - chr8_1:86172162-86172181 Msa1222020:intron 30.0%
GGAATTGTTCAACCAAATAA+TGG + chr8_1:86172177-86172196 None:intergenic 30.0%
TGCACATCAAAACATTATAG+AGG + chr8_1:86172198-86172217 None:intergenic 30.0%
!! GTTACATATGTAGCATTGAT+AGG + chr8_1:86172434-86172453 None:intergenic 30.0%
TAATCTTTCTTCACAGTAAG+GGG + chr8_1:86172575-86172594 None:intergenic 30.0%
CTTAATCTTTCTTCACAGTA+AGG + chr8_1:86172577-86172596 None:intergenic 30.0%
AAGGGAAGAGTGAAATTACT+TGG + chr8_1:86169957-86169976 None:intergenic 35.0%
ATAACTTAGCCGGAGTATAT+AGG - chr8_1:86170458-86170477 Msa1222020:intron 35.0%
!!! ATTAACCTCGTTGTTTTAGG+TGG - chr8_1:86170832-86170851 Msa1222020:CDS 35.0%
!!! TTAACCTCGTTGTTTTAGGT+GGG - chr8_1:86170833-86170852 Msa1222020:CDS 35.0%
AGGATAACAGGATATGGAAA+AGG - chr8_1:86171199-86171218 Msa1222020:intron 35.0%
GGATAACAGGATATGGAAAA+GGG - chr8_1:86171200-86171219 Msa1222020:intron 35.0%
!! ATAGTAAGCACTGACAAAGT+TGG - chr8_1:86171236-86171255 Msa1222020:intron 35.0%
TGACAAAGTTGGAAAATCAG+TGG - chr8_1:86171247-86171266 Msa1222020:intron 35.0%
GACAAAGTTGGAAAATCAGT+GGG - chr8_1:86171248-86171267 Msa1222020:intron 35.0%
TATACAGGTATCTTCAGGAA+AGG - chr8_1:86171535-86171554 Msa1222020:CDS 35.0%
AGGAAAGGATGGTTCAAAAA+AGG - chr8_1:86171550-86171569 Msa1222020:CDS 35.0%
TTATAGTAAACTGAGGAGCA+TGG + chr8_1:86171700-86171719 None:intergenic 35.0%
CTCCATTAATTGCCTCAATT+TGG + chr8_1:86171759-86171778 None:intergenic 35.0%
CTAGTTATTGAAGGTCAAAC+TGG - chr8_1:86171808-86171827 Msa1222020:intron 35.0%
TCATGTAATGTATGGTCCTA+TGG + chr8_1:86171884-86171903 None:intergenic 35.0%
AGGACCATACATTACATGAA+CGG - chr8_1:86171885-86171904 Msa1222020:intron 35.0%
ATCTCCGTTCATGTAATGTA+TGG + chr8_1:86171892-86171911 None:intergenic 35.0%
ATGCAATAATGCCAACATGT+CGG + chr8_1:86172082-86172101 None:intergenic 35.0%
GTAGCGAAAATTGTATGGTT+TGG + chr8_1:86172394-86172413 None:intergenic 35.0%
CCATATCAAGCAACAACAAT+CGG + chr8_1:86172486-86172505 None:intergenic 35.0%
AGCAGAAAAGAAGTTGGGAA+AGG - chr8_1:86169823-86169842 Msa1222020:three_prime_UTR 40.0%
! AATTGAGCGTTGTTGGATAG+AGG + chr8_1:86169893-86169912 None:intergenic 40.0%
GGAAGAGTGAAATTACTTGG+CGG + chr8_1:86169954-86169973 None:intergenic 40.0%
GGATTTACACAACCTTGGTT+AGG - chr8_1:86170191-86170210 Msa1222020:intron 40.0%
AACAGTAGTAGATAGTACGC+AGG - chr8_1:86170242-86170261 Msa1222020:intron 40.0%
TGTGTCTGCATTGGGAATTT+GGG + chr8_1:86170307-86170326 None:intergenic 40.0%
ATGTGTCTGCATTGGGAATT+TGG + chr8_1:86170308-86170327 None:intergenic 40.0%
ATTCCTTGCGATTATCCCTT+GGG + chr8_1:86170331-86170350 None:intergenic 40.0%
TATTCCTTGCGATTATCCCT+TGG + chr8_1:86170332-86170351 None:intergenic 40.0%
GGGATAATCGCAAGGAATAA+TGG - chr8_1:86170333-86170352 Msa1222020:intron 40.0%
! GTTGGATTTTCTCTGCTTGA+AGG - chr8_1:86170751-86170770 Msa1222020:intron 40.0%
!!! TAACCTCGTTGTTTTAGGTG+GGG - chr8_1:86170834-86170853 Msa1222020:CDS 40.0%
!! TGCATACATTGGGATTAGCT+AGG + chr8_1:86170923-86170942 None:intergenic 40.0%
TGACTATAGCATAGGATCAC+AGG + chr8_1:86171117-86171136 None:intergenic 40.0%
ACAAATGTACAGGAGAGAAG+TGG - chr8_1:86171159-86171178 Msa1222020:intron 40.0%
TAGAAGGAAGCAACAAAGCT+GGG + chr8_1:86171429-86171448 None:intergenic 40.0%
! TTCATTCCTCTTCCCTTTTG+CGG - chr8_1:86171473-86171492 Msa1222020:intron 40.0%
TGTAATCATGGTTGATCCTG+TGG - chr8_1:86171574-86171593 Msa1222020:intron 40.0%
GTAGAAAAGACGCCAAATTG+AGG - chr8_1:86171744-86171763 Msa1222020:intron 40.0%
CGCCAAATTGAGGCAATTAA+TGG - chr8_1:86171754-86171773 Msa1222020:intron 40.0%
TTGAGGCAATTAATGGAGCT+TGG - chr8_1:86171761-86171780 Msa1222020:intron 40.0%
TGAGGCAATTAATGGAGCTT+GGG - chr8_1:86171762-86171781 Msa1222020:intron 40.0%
ATCATTACCCAGGTGAACAT+TGG - chr8_1:86171838-86171857 Msa1222020:intron 40.0%
AGCATTTCCAATGTTCACCT+GGG + chr8_1:86171848-86171867 None:intergenic 40.0%
AAGCATTTCCAATGTTCACC+TGG + chr8_1:86171849-86171868 None:intergenic 40.0%
! GCTTTTGTTCACATGTCCAT+AGG - chr8_1:86171865-86171884 Msa1222020:intron 40.0%
! TATGTGTCCATGCTCCTTTT+CGG + chr8_1:86172292-86172311 None:intergenic 40.0%
!! TGTAGCATTGATAGGCAACA+AGG + chr8_1:86172426-86172445 None:intergenic 40.0%
! CCGATTGTTGTTGCTTGATA+TGG - chr8_1:86172483-86172502 Msa1222020:CDS 40.0%
ACCTCGGAAAAACAATGAGT+GGG + chr8_1:86172516-86172535 None:intergenic 40.0%
AACAATAAATGCCACCACCT+CGG + chr8_1:86172532-86172551 None:intergenic 40.0%
GTTGGGAAAGGATAAAGCGA+AGG - chr8_1:86169835-86169854 Msa1222020:three_prime_UTR 45.0%
! TAAAGCGAAGGTGTGAGCAA+TGG - chr8_1:86169847-86169866 Msa1222020:three_prime_UTR 45.0%
! AAAGCGAAGGTGTGAGCAAT+GGG - chr8_1:86169848-86169867 Msa1222020:three_prime_UTR 45.0%
GTTGTTGGATAGAGGAAGAG+TGG + chr8_1:86169885-86169904 None:intergenic 45.0%
TGAAATTACTTGGCGGTGGT+CGG + chr8_1:86169947-86169966 None:intergenic 45.0%
AGAGTGAAATTACTTGGCGG+TGG + chr8_1:86169951-86169970 None:intergenic 45.0%
GTAGTCGCTCATAACTTAGC+CGG - chr8_1:86170448-86170467 Msa1222020:intron 45.0%
TCTGCTTGAAGGAATCAGCA+TGG - chr8_1:86170762-86170781 Msa1222020:intron 45.0%
TGGAGAAGAGAGCAATATGC+TGG - chr8_1:86170858-86170877 Msa1222020:CDS 45.0%
AAGAGAGCAATATGCTGGCA+TGG - chr8_1:86170863-86170882 Msa1222020:CDS 45.0%
TGCTTGACTCTGGGTTCTAT+TGG + chr8_1:86170892-86170911 None:intergenic 45.0%
GACTCGAAATGCTTGACTCT+GGG + chr8_1:86170901-86170920 None:intergenic 45.0%
ATGTACAGGAGAGAAGTGGT+AGG - chr8_1:86171163-86171182 Msa1222020:intron 45.0%
GTAGAAGGAAGCAACAAAGC+TGG + chr8_1:86171430-86171449 None:intergenic 45.0%
AGAAAACCGCAAAAGGGAAG+AGG + chr8_1:86171482-86171501 None:intergenic 45.0%
CAGGTATCTTCAGGAAAGGA+TGG - chr8_1:86171539-86171558 Msa1222020:CDS 45.0%
AATGGAGCTTGGGCAATGAT+TGG - chr8_1:86171772-86171791 Msa1222020:intron 45.0%
!! GGCAATGATTGGTCTAACAG+CGG - chr8_1:86171783-86171802 Msa1222020:intron 45.0%
!! GCAATGATTGGTCTAACAGC+GGG - chr8_1:86171784-86171803 Msa1222020:intron 45.0%
ACAGCGGGTCTAGTTATTGA+AGG - chr8_1:86171799-86171818 Msa1222020:intron 45.0%
CAGATTGGAGAGATAGAGAG+AGG + chr8_1:86171957-86171976 None:intergenic 45.0%
TCGCTTTACTTCATGGCCTT+TGG + chr8_1:86172013-86172032 None:intergenic 45.0%
GATGTGCTCGCTTTACTTCA+TGG + chr8_1:86172020-86172039 None:intergenic 45.0%
TCTCAGCTGCAAGACTACTT+TGG - chr8_1:86172234-86172253 Msa1222020:intron 45.0%
TGTGAAGTAGACAGCCGAAA+AGG - chr8_1:86172275-86172294 Msa1222020:intron 45.0%
!! ACCCACTCATTGTTTTTCCG+AGG - chr8_1:86172512-86172531 Msa1222020:CDS 45.0%
CACCTCGGAAAAACAATGAG+TGG + chr8_1:86172517-86172536 None:intergenic 45.0%
!! CACTCATTGTTTTTCCGAGG+TGG - chr8_1:86172515-86172534 Msa1222020:CDS 45.0%
!! TCATTGTTTTTCCGAGGTGG+TGG - chr8_1:86172518-86172537 Msa1222020:CDS 45.0%
! GGAAGGGAATTGAGCGTTGT+TGG + chr8_1:86169900-86169919 None:intergenic 50.0%
GGTGGGTGTGATGAAAGGAA+GGG + chr8_1:86169916-86169935 None:intergenic 50.0%
! TGGTGGGTGTGATGAAAGGA+AGG + chr8_1:86169917-86169936 None:intergenic 50.0%
!! AGAGTGGTGGGTGTGATGAA+AGG + chr8_1:86169921-86169940 None:intergenic 50.0%
ACTCGTGTATATCCCCGTCT+CGG + chr8_1:86170269-86170288 None:intergenic 50.0%
CCTTGGGATGTGTCTGCATT+GGG + chr8_1:86170315-86170334 None:intergenic 50.0%
CCAATGCAGACACATCCCAA+GGG - chr8_1:86170313-86170332 Msa1222020:intron 50.0%
CATCCCAAGGGATAATCGCA+AGG - chr8_1:86170325-86170344 Msa1222020:intron 50.0%
AATCAGCATGGCAACCTTGC+AGG - chr8_1:86170774-86170793 Msa1222020:intron 50.0%
ATCAGCATGGCAACCTTGCA+GGG - chr8_1:86170775-86170794 Msa1222020:intron 50.0%
CATCCCCACCTAAAACAACG+AGG + chr8_1:86170840-86170859 None:intergenic 50.0%
!!! CTCGTTGTTTTAGGTGGGGA+TGG - chr8_1:86170838-86170857 Msa1222020:CDS 50.0%
GGACTCGAAATGCTTGACTC+TGG + chr8_1:86170902-86170921 None:intergenic 50.0%
GATAGAGAGAGGTGACTGCA+GGG + chr8_1:86171946-86171965 None:intergenic 50.0%
AGATAGAGAGAGGTGACTGC+AGG + chr8_1:86171947-86171966 None:intergenic 50.0%
TGTGTGACTGCAGTCAATCC+TGG - chr8_1:86172055-86172074 Msa1222020:intron 50.0%
TCAATCCTGGTCCGACATGT+TGG - chr8_1:86172068-86172087 Msa1222020:intron 50.0%
TAATGCCAACATGTCGGACC+AGG + chr8_1:86172076-86172095 None:intergenic 50.0%
TAGACAGCCGAAAAGGAGCA+TGG - chr8_1:86172282-86172301 Msa1222020:intron 50.0%
GGTGGTCGGAAAAGAGTGGT+GGG + chr8_1:86169933-86169952 None:intergenic 55.0%
GATAGTACGCAGGACCGAGA+CGG - chr8_1:86170252-86170271 Msa1222020:intron 55.0%
ATAGTACGCAGGACCGAGAC+GGG - chr8_1:86170253-86170272 Msa1222020:intron 55.0%
CCCAATGCAGACACATCCCA+AGG - chr8_1:86170312-86170331 Msa1222020:intron 55.0%
CCCTTGGGATGTGTCTGCAT+TGG + chr8_1:86170316-86170335 None:intergenic 55.0%
AACAAGGTCCTTGCCCTGCA+AGG + chr8_1:86170791-86170810 None:intergenic 55.0%
TCCTGTGGAAGCCAAGCGAT+TGG - chr8_1:86171589-86171608 Msa1222020:intron 55.0%
TTGTTCGGCAGCCAATCGCT+TGG + chr8_1:86171603-86171622 None:intergenic 55.0%
! GCGATTGGCTGCCGAACAAA+TGG - chr8_1:86171604-86171623 Msa1222020:intron 55.0%
CGGTGGTCGGAAAAGAGTGG+TGG + chr8_1:86169934-86169953 None:intergenic 60.0%
TGGCGGTGGTCGGAAAAGAG+TGG + chr8_1:86169937-86169956 None:intergenic 60.0%
TAGTACGCAGGACCGAGACG+GGG - chr8_1:86170254-86170273 Msa1222020:intron 60.0%
CATGGCAACCTTGCAGGGCA+AGG - chr8_1:86170780-86170799 Msa1222020:CDS 60.0%
GCCAATCGCTTGGCTTCCAC+AGG + chr8_1:86171593-86171612 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 86169820 86172611 86169820 ID=Msa1222020;Name=Msa1222020
chr8_1 mRNA 86169820 86172611 86169820 ID=Msa1222020-mRNA-1;Parent=Msa1222020;Name=Msa1222020-mRNA-1;_AED=0.14;_eAED=0.14;_QI=46|1|1|1|0.75|0.8|5|327|145
chr8_1 exon 86169820 86170191 86169820 ID=Msa1222020-mRNA-1:exon:30933;Parent=Msa1222020-mRNA-1
chr8_1 exon 86170582 86170683 86170582 ID=Msa1222020-mRNA-1:exon:30932;Parent=Msa1222020-mRNA-1
chr8_1 exon 86170776 86170889 86170776 ID=Msa1222020-mRNA-1:exon:30931;Parent=Msa1222020-mRNA-1
chr8_1 exon 86171496 86171580 86171496 ID=Msa1222020-mRNA-1:exon:30930;Parent=Msa1222020-mRNA-1
chr8_1 exon 86172474 86172611 86172474 ID=Msa1222020-mRNA-1:exon:30929;Parent=Msa1222020-mRNA-1
chr8_1 five_prime_UTR 86172566 86172611 86172566 ID=Msa1222020-mRNA-1:five_prime_utr;Parent=Msa1222020-mRNA-1
chr8_1 CDS 86172474 86172565 86172474 ID=Msa1222020-mRNA-1:cds;Parent=Msa1222020-mRNA-1
chr8_1 CDS 86171496 86171580 86171496 ID=Msa1222020-mRNA-1:cds;Parent=Msa1222020-mRNA-1
chr8_1 CDS 86170776 86170889 86170776 ID=Msa1222020-mRNA-1:cds;Parent=Msa1222020-mRNA-1
chr8_1 CDS 86170582 86170683 86170582 ID=Msa1222020-mRNA-1:cds;Parent=Msa1222020-mRNA-1
chr8_1 CDS 86170147 86170191 86170147 ID=Msa1222020-mRNA-1:cds;Parent=Msa1222020-mRNA-1
chr8_1 three_prime_UTR 86169820 86170146 86169820 ID=Msa1222020-mRNA-1:three_prime_utr;Parent=Msa1222020-mRNA-1
Gene Sequence

>Msa1222020

ATGGGTTCTTCTTCAACCACTCTTCCTCTATCCAACAACGCTCAATTCCCTTCCTTTCATCACACCCACCACTCTTTTCCGACCACCGCCAAGTGGGGATGGAGAAGAGAGCAATATGCTGGCATGGCTTCCAATAGAACCCAGAGTCAAGCATTTCGAGTCCTAGCTAATCCCAATGTATCTTCAGGAAAGGATGGTTCAAAAAAGGATGTAATCATGGTTGATCCTGTGGAAGCCAAGCGATTGGCTGCCGAACAAATGGAGATAATTAAAGCAAAAGAAAAACTCAAGAAAAGACGCCAAATTGAGGCAATTAATGGAGCTTGGGCAATGATTGGTCTAACAGCGGGTCTAGTTATTGAAGGTCAAACTGGAAAAAATATCATTACCCAGCTGCAAGACTACTTTGGAGCAATTGTTCACTTTTTTGTGAAGTAG

Protein sequence

>Msa1222020

MGSSSTTLPLSNNAQFPSFHHTHHSFPTTAKWGWRREQYAGMASNRTQSQAFRVLANPNVSSGKDGSKKDVIMVDPVEAKRLAAEQMEIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQTGKNIITQLQDYFGAIVHFFVK*