AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154130 MtrunA17_Chr7g0245041 97.556 491 12 0 1 491 1 491 0.0 988
Msa1154130 MtrunA17_Chr8g0334531 73.360 503 119 7 1 491 13 512 0.0 671
Msa1154130 MtrunA17_Chr5g0422461 40.102 394 195 9 86 472 106 465 5.24e-90 286
Msa1154130 MtrunA17_Chr7g0245081 96.842 95 3 0 384 478 1 95 5.64e-57 187
Msa1154130 MtrunA17_Chr7g0245091 87.234 47 6 0 284 330 1 47 4.22e-22 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154130 AT5G01920.1 66.867 498 152 6 1 489 1 494 0.0 622
Msa1154130 AT5G01920.2 66.867 498 152 6 1 489 1 494 0.0 622
Msa1154130 AT1G68830.1 39.899 396 197 9 96 483 101 463 1.17e-84 272

Find 103 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATTAAACTCATTGATTT+TGG 0.192635 7_4:+41488593 Msa1154130:CDS
CATAATTCTTTCCTATTCTA+AGG 0.205369 7_4:-41488628 None:intergenic
AGGAACTTGGCACATGTTTC+AGG 0.208561 7_4:-41487795 None:intergenic
CAAATCCTTGATAGTGATTC+TGG 0.233558 7_4:+41489710 Msa1154130:CDS
TCTTCTTTCGGAACTTCTTT+TGG 0.248855 7_4:-41489765 None:intergenic
GCAAGACCAGGTGTTCTTAT+TGG 0.255792 7_4:+41487067 Msa1154130:CDS
ATTGTTCAATAACAAGTCTT+TGG 0.264615 7_4:-41486942 None:intergenic
ATTGAAGGGGCTAAAGAATT+TGG 0.281260 7_4:+41487729 Msa1154130:CDS
TGCTATTGATGCATATCTTT+TGG 0.286774 7_4:+41487090 Msa1154130:CDS
GTTAAGAAAGAATTGTTAAA+TGG 0.291124 7_4:-41486860 None:intergenic
TTGTTCAATAACAAGTCTTT+GGG 0.292907 7_4:-41486941 None:intergenic
AATTCACAAAAGGTGGAAAA+TGG 0.296536 7_4:+41487850 Msa1154130:CDS
GGATAAAGTCATTCTTAAAA+AGG 0.305148 7_4:+41487297 Msa1154130:CDS
TGCTTTGAAGAATTTCAATT+TGG 0.305364 7_4:+41489622 Msa1154130:CDS
TGTTGTTTATTCTGCTGTTT+TGG 0.310233 7_4:+41487210 Msa1154130:CDS
AAGGTGGAAAATGGCTTGTT+TGG 0.317886 7_4:+41487859 Msa1154130:CDS
CAGAATCACTATCAAGGATT+TGG 0.317958 7_4:-41489709 None:intergenic
GGATCCAAAGGTGTATAATT+AGG 0.325357 7_4:-41488653 None:intergenic
CAAAGCAGCTTGAGACCTTA+AGG 0.325974 7_4:-41489606 None:intergenic
AATTTGGAAATGAGGACATA+TGG 0.340412 7_4:+41489638 Msa1154130:CDS
AGCAAAGCTGCAATTGGTTC+TGG 0.351901 7_4:-41488731 None:intergenic
TCACCACCTAGAAGAAAATA+AGG 0.353507 7_4:-41489821 None:intergenic
TTTGTTGTGGATAGTTTATC+TGG 0.355447 7_4:+41487124 Msa1154130:CDS
AGATAAACGCTTTCTTCTTT+CGG 0.357180 7_4:-41489777 None:intergenic
GAGATAAATATACTTACATT+TGG 0.358088 7_4:-41490146 None:intergenic
TCTTAAGAGATGTAATGATT+TGG 0.373158 7_4:-41488502 None:intergenic
TGTGCCTAATTATACACCTT+TGG 0.381947 7_4:+41488649 Msa1154130:CDS
TGTAGTTGTTGTAGATAGTA+AGG 0.383501 7_4:-41486780 None:intergenic
TTCTTGATTGGTGGTAAGAT+AGG 0.387351 7_4:+41487172 Msa1154130:CDS
AGACTGCTTGAGAAAGCTTA+TGG 0.390854 7_4:+41489949 Msa1154130:three_prime_UTR
TAGAATGATTCTTGTTGAAA+AGG 0.391353 7_4:-41486889 None:intergenic
AAGAGGAGTGATTTCTTGAT+TGG 0.402107 7_4:+41487160 Msa1154130:CDS
TAAGTTGGATGCTAAATCTA+AGG 0.404865 7_4:+41487276 Msa1154130:CDS
CTTAAGAAAATTCACGATAC+TGG 0.413330 7_4:+41488518 Msa1154130:CDS
GCTCTCACCAATCTTGTGGC+AGG 0.413652 7_4:+41488751 Msa1154130:CDS
TATCTGCTGCTTCTGCTTTG+AGG 0.415054 7_4:+41489795 Msa1154130:CDS
AGAATTTCAATTTGGAAATG+AGG 0.423421 7_4:+41489630 Msa1154130:CDS
TGTGGTAGAACATATAGTTC+AGG 0.425025 7_4:-41488689 None:intergenic
CAGGTGAAGGTTGGAATTGA+AGG 0.425995 7_4:+41487714 Msa1154130:intron
ATGATGCTTAAGAGTGGAAA+AGG 0.429785 7_4:+41487253 Msa1154130:CDS
AATAAAACCTGCCACAAGAT+TGG 0.430494 7_4:-41488758 None:intergenic
GGATGGATGCACAAGTATCT+TGG 0.433898 7_4:-41490212 None:intergenic
GGTGAGAGCAAAGCTGCAAT+TGG 0.448894 7_4:-41488737 None:intergenic
AATAAGCTGGAAACAGCTTA+TGG 0.450788 7_4:-41489988 None:intergenic
GAAACATGTGCCAAGTTCCT+TGG 0.452194 7_4:+41487798 Msa1154130:CDS
ACGATACTGGCATTGTTCAC+AGG 0.453178 7_4:+41488531 Msa1154130:CDS
AGTTCAGGAGGACAGTAATC+AGG 0.454008 7_4:-41488674 None:intergenic
ATGGATATGATTTGAACAAA+TGG 0.455978 7_4:+41489657 Msa1154130:CDS
AAGATAGGAGAAGGGTCATT+TGG 0.457236 7_4:+41487187 Msa1154130:CDS
CTTGATAGTGATTCTGGTAG+AGG 0.461595 7_4:+41489716 Msa1154130:CDS
TAGTGATTCTGGTAGAGGTT+GGG 0.467038 7_4:+41489721 Msa1154130:CDS
AAATGGCAATACCAACCTTA+AGG 0.473712 7_4:+41489591 Msa1154130:CDS
GTTTGGATAAGTTTATATAC+CGG 0.480172 7_4:+41489912 Msa1154130:three_prime_UTR
TACAAAACTTCCAAGGAACT+TGG 0.480257 7_4:-41487808 None:intergenic
TAAGAGTGGAAAAGGTAAGT+TGG 0.483976 7_4:+41487261 Msa1154130:CDS
AGGAGTGATTTCTTGATTGG+TGG 0.486103 7_4:+41487163 Msa1154130:CDS
ACCAATTCACAATTCACAAA+AGG 0.486126 7_4:+41487840 Msa1154130:CDS
CTTTGCTCTCACCAATCTTG+TGG 0.487689 7_4:+41488747 Msa1154130:CDS
TTTATCAGACATGCAGAGGT+TGG 0.500221 7_4:+41487003 Msa1154130:CDS
TGGAAAATGCAGGTGAAGGT+TGG 0.503897 7_4:+41487705 Msa1154130:intron
ATGACAGATTCTAAGTTTGA+AGG 0.504582 7_4:-41488410 None:intergenic
AAACAGCTTATGGCATGTAT+AGG 0.505732 7_4:-41489978 None:intergenic
GAAAGAATTGTTAAATGGAG+TGG 0.508408 7_4:-41486855 None:intergenic
ATTGGTGGTAAGATAGGAGA+AGG 0.514578 7_4:+41487178 Msa1154130:CDS
CTGGAAGGAGAGATTTGAAG+AGG 0.517706 7_4:+41487143 Msa1154130:CDS
TATCAGCTACAAAACTTCCA+AGG 0.517815 7_4:-41487815 None:intergenic
GAGAGCTTACGAAAATAAGC+TGG 0.524527 7_4:-41490001 None:intergenic
TGACAGATTCTAAGTTTGAA+GGG 0.525444 7_4:-41488409 None:intergenic
ATAGTGATTCTGGTAGAGGT+TGG 0.526824 7_4:+41489720 Msa1154130:CDS
ATGGCTTGTTTGGAAATTTG+AGG 0.527072 7_4:+41487869 Msa1154130:CDS
GGATGTAAAGCCTTCCAACT+TGG 0.528793 7_4:+41488553 Msa1154130:CDS
TTCGTAACAACCAAGTTGGA+AGG 0.529719 7_4:-41488563 None:intergenic
CGATACTGGCATTGTTCACA+GGG 0.533903 7_4:+41488532 Msa1154130:CDS
GCAGCAACAGACCTTAGAAT+AGG 0.534028 7_4:+41488617 Msa1154130:CDS
CTATCCACAACAAATTGCAT+TGG 0.535736 7_4:-41487115 None:intergenic
GGCTCCAATGCAATTTGTTG+TGG 0.536387 7_4:+41487111 Msa1154130:CDS
TAAGTTTCAGAGTGTGAGTG+AGG 0.537619 7_4:+41486979 Msa1154130:CDS
TTGTGGATAGTTTATCTGGA+AGG 0.538024 7_4:+41487128 Msa1154130:CDS
AATTCACAATTCACAAAAGG+TGG 0.543613 7_4:+41487843 Msa1154130:CDS
TCAACAAGAATCATTCTACA+AGG 0.551400 7_4:+41486894 Msa1154130:CDS
CTCTACCAGAATCACTATCA+AGG 0.552037 7_4:-41489715 None:intergenic
AGTCTCACCCGTGTTTATGC+CGG 0.555586 7_4:-41489931 None:intergenic
TGGAATTGTACTCTTGCAAA+TGG 0.555729 7_4:+41489574 Msa1154130:CDS
GCAGCTTGAGACCTTAAGGT+TGG 0.570427 7_4:-41489602 None:intergenic
TTATGAGTATGTTGAAGTGT+AGG 0.575012 7_4:-41486803 None:intergenic
GATATGATTTGAACAAATGG+AGG 0.576550 7_4:+41489660 Msa1154130:CDS
AGGTGAAGGTTGGAATTGAA+GGG 0.576855 7_4:+41487715 Msa1154130:intron
GGAAGACTTTGTGTTTCTTG+TGG 0.591105 7_4:-41488707 None:intergenic
TTTATATACCGGCATAAACA+CGG 0.600867 7_4:+41489923 Msa1154130:three_prime_UTR
AGGATTTATCAGACATGCAG+AGG 0.603674 7_4:+41486999 Msa1154130:CDS
AATTTGGTGATTGTGAAGAG+TGG 0.607180 7_4:+41487745 Msa1154130:CDS
ATGTTTCGAAATGCGTTGCA+AGG 0.615252 7_4:+41488431 Msa1154130:CDS
AAAGCTGCAATTGGTTCTGG+AGG 0.616137 7_4:-41488728 None:intergenic
GGACAGTAATCAGGATCCAA+AGG 0.623204 7_4:-41488665 None:intergenic
AAAGAGATGATGCTTAAGAG+TGG 0.625247 7_4:+41487247 Msa1154130:CDS
TGTTCAATAACAAGTCTTTG+GGG 0.631808 7_4:-41486940 None:intergenic
ATAGCACCAATAAGAACACC+TGG 0.641228 7_4:-41487073 None:intergenic
TTATATACCGGCATAAACAC+GGG 0.644320 7_4:+41489924 Msa1154130:three_prime_UTR
TTGGTGGTAAGATAGGAGAA+GGG 0.647730 7_4:+41487179 Msa1154130:CDS
ATATGATTTGAACAAATGGA+GGG 0.648335 7_4:+41489661 Msa1154130:CDS
GGTGAAGGTTGGAATTGAAG+GGG 0.652761 7_4:+41487716 Msa1154130:intron
GGTAGAACATATAGTTCAGG+AGG 0.667620 7_4:-41488686 None:intergenic
TCATGTAATCAGCAAGAGTG+CGG 0.675765 7_4:-41488373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATAATCATTTAATAATT+AGG + chr7_4:41489132-41489151 Msa1154130:intron 10.0%
!! ATATAAATTATGTAATAAAG+TGG + chr7_4:41489494-41489513 Msa1154130:intron 10.0%
!!! ATTGAACAATACATTTTATT+TGG + chr7_4:41486955-41486974 Msa1154130:CDS 15.0%
!!! TAATTTAATGGTTTTATTGT+TGG + chr7_4:41487356-41487375 Msa1154130:intron 15.0%
!!! TTTAACTTTTGTTATGAAAA+TGG - chr7_4:41488878-41488897 None:intergenic 15.0%
!! GTTAAGAAAGAATTGTTAAA+TGG - chr7_4:41486863-41486882 None:intergenic 20.0%
!! TTCATTGCTTCTTAATTTAA+TGG + chr7_4:41487344-41487363 Msa1154130:intron 20.0%
!!! TTTTATTGTTGGAATAGTTA+TGG + chr7_4:41487367-41487386 Msa1154130:intron 20.0%
!! ATGACTTAAATTAGATACAT+AGG + chr7_4:41487621-41487640 Msa1154130:intron 20.0%
!! AATTATTTAGTAAGACTACT+GGG - chr7_4:41487902-41487921 None:intergenic 20.0%
!! AAATTATTTAGTAAGACTAC+TGG - chr7_4:41487903-41487922 None:intergenic 20.0%
!!! ACTAAATAATTTGTATCCAT+AGG + chr7_4:41487911-41487930 Msa1154130:intron 20.0%
!! GATGTTATAAAAGCTTAATT+AGG - chr7_4:41488824-41488843 None:intergenic 20.0%
!!! TTCTACTTAAGATATTTCTA+AGG - chr7_4:41489058-41489077 None:intergenic 20.0%
!! ATTTATATTTCAAACAGACA+AGG - chr7_4:41489482-41489501 None:intergenic 20.0%
!!! TTATAAATTTTTGGTCTGTT+TGG + chr7_4:41489895-41489914 Msa1154130:three_prime_UTR 20.0%
!! GAGATAAATATACTTACATT+TGG - chr7_4:41490149-41490168 None:intergenic 20.0%
!!! TCATATGTTTTAAAAACAAC+TGG + chr7_4:41490185-41490204 Msa1154130:three_prime_UTR 20.0%
! GTCTTAAAAAGTAACATTCA+TGG + chr7_4:41486754-41486773 Msa1154130:exon 25.0%
! TAGAATGATTCTTGTTGAAA+AGG - chr7_4:41486892-41486911 None:intergenic 25.0%
! TTGTTCAATAACAAGTCTTT+GGG - chr7_4:41486944-41486963 None:intergenic 25.0%
! ATTGTTCAATAACAAGTCTT+TGG - chr7_4:41486945-41486964 None:intergenic 25.0%
!!! TTGGAGATTTTACTTTTTGT+TGG + chr7_4:41487022-41487041 Msa1154130:CDS 25.0%
! GGATAAAGTCATTCTTAAAA+AGG + chr7_4:41487297-41487316 Msa1154130:CDS 25.0%
!! CATTTCAGTAACAAAGTATT+AGG - chr7_4:41487586-41487605 None:intergenic 25.0%
!! ATTAGTTCTTGAGTAAATGA+AGG - chr7_4:41488019-41488038 None:intergenic 25.0%
! CAATTAGTATAAAGAACAGT+TGG - chr7_4:41488328-41488347 None:intergenic 25.0%
! TGTTCTTTATACTAATTGCA+GGG + chr7_4:41488330-41488349 Msa1154130:intron 25.0%
! TCTTAAGAGATGTAATGATT+TGG - chr7_4:41488505-41488524 None:intergenic 25.0%
!!! CAGATTAAACTCATTGATTT+TGG + chr7_4:41488593-41488612 Msa1154130:CDS 25.0%
! CATAATTCTTTCCTATTCTA+AGG - chr7_4:41488631-41488650 None:intergenic 25.0%
! TTCTGTTATCCTATTCATAT+AGG + chr7_4:41488780-41488799 Msa1154130:intron 25.0%
!! TATCAGCAAAAGAAGTATAT+AGG + chr7_4:41488965-41488984 Msa1154130:intron 25.0%
! TGATTCTTCTATCAATATCT+TGG - chr7_4:41488991-41489010 None:intergenic 25.0%
!! AGAATGCATTAGTAGTATTT+TGG + chr7_4:41489024-41489043 Msa1154130:intron 25.0%
! GAATACATATCAAAAAGATC+AGG - chr7_4:41489551-41489570 None:intergenic 25.0%
!!! TGCTTTGAAGAATTTCAATT+TGG + chr7_4:41489622-41489641 Msa1154130:CDS 25.0%
! AGAATTTCAATTTGGAAATG+AGG + chr7_4:41489630-41489649 Msa1154130:CDS 25.0%
! ATGGATATGATTTGAACAAA+TGG + chr7_4:41489657-41489676 Msa1154130:CDS 25.0%
! ATATGATTTGAACAAATGGA+GGG + chr7_4:41489661-41489680 Msa1154130:CDS 25.0%
!! GTGAACTGCTTATAAATTTT+TGG + chr7_4:41489886-41489905 Msa1154130:exon 25.0%
! GTTTGGATAAGTTTATATAC+CGG + chr7_4:41489912-41489931 Msa1154130:three_prime_UTR 25.0%
TGTAGTTGTTGTAGATAGTA+AGG - chr7_4:41486783-41486802 None:intergenic 30.0%
TTATGAGTATGTTGAAGTGT+AGG - chr7_4:41486806-41486825 None:intergenic 30.0%
GAAAGAATTGTTAAATGGAG+TGG - chr7_4:41486858-41486877 None:intergenic 30.0%
TCAACAAGAATCATTCTACA+AGG + chr7_4:41486894-41486913 Msa1154130:CDS 30.0%
TGTTCAATAACAAGTCTTTG+GGG - chr7_4:41486943-41486962 None:intergenic 30.0%
!!! GATTTTACTTTTTGTTGGAC+TGG + chr7_4:41487027-41487046 Msa1154130:CDS 30.0%
! TGCTATTGATGCATATCTTT+TGG + chr7_4:41487090-41487109 Msa1154130:CDS 30.0%
! TTTGTTGTGGATAGTTTATC+TGG + chr7_4:41487124-41487143 Msa1154130:CDS 30.0%
!! TGTTGTTTATTCTGCTGTTT+TGG + chr7_4:41487210-41487229 Msa1154130:CDS 30.0%
! TAAGTTGGATGCTAAATCTA+AGG + chr7_4:41487276-41487295 Msa1154130:CDS 30.0%
ACCAATTCACAATTCACAAA+AGG + chr7_4:41487840-41487859 Msa1154130:CDS 30.0%
! ACCTTTTGTGAATTGTGAAT+TGG - chr7_4:41487844-41487863 None:intergenic 30.0%
AATTCACAATTCACAAAAGG+TGG + chr7_4:41487843-41487862 Msa1154130:CDS 30.0%
AATTCACAAAAGGTGGAAAA+TGG + chr7_4:41487850-41487869 Msa1154130:CDS 30.0%
!!! GTTGGTTTTAACTTTATCCT+TGG + chr7_4:41487972-41487991 Msa1154130:intron 30.0%
! GTAAATGAAGGAGTATAGTA+TGG - chr7_4:41488007-41488026 None:intergenic 30.0%
! TAGCAGAAAAAGAGAGTTTT+AGG + chr7_4:41488232-41488251 Msa1154130:intron 30.0%
ATGTAAGATATACGCATCTT+AGG + chr7_4:41488292-41488311 Msa1154130:intron 30.0%
CTGTTCTTTATACTAATTGC+AGG + chr7_4:41488329-41488348 Msa1154130:intron 30.0%
TGACAGATTCTAAGTTTGAA+GGG - chr7_4:41488412-41488431 None:intergenic 30.0%
ATGACAGATTCTAAGTTTGA+AGG - chr7_4:41488413-41488432 None:intergenic 30.0%
CTTAAGAAAATTCACGATAC+TGG + chr7_4:41488518-41488537 Msa1154130:CDS 30.0%
!!! TTTTTTCGTAACAACCAAGT+TGG - chr7_4:41488570-41488589 None:intergenic 30.0%
AACTTGGTTGTTACGAAAAA+AGG + chr7_4:41488569-41488588 Msa1154130:CDS 30.0%
ACTTGGTTGTTACGAAAAAA+GGG + chr7_4:41488570-41488589 Msa1154130:CDS 30.0%
TTTACTATTGTGTTTGCATC+AGG + chr7_4:41489089-41489108 Msa1154130:intron 30.0%
! TCTAGAAATTCTGAAGAGAA+AGG - chr7_4:41489373-41489392 None:intergenic 30.0%
! CTTTTTGATATGTATTCTGC+TGG + chr7_4:41489554-41489573 Msa1154130:CDS 30.0%
AATTTGGAAATGAGGACATA+TGG + chr7_4:41489638-41489657 Msa1154130:CDS 30.0%
GATATGATTTGAACAAATGG+AGG + chr7_4:41489660-41489679 Msa1154130:CDS 30.0%
AGATAAACGCTTTCTTCTTT+CGG - chr7_4:41489780-41489799 None:intergenic 30.0%
TTTATATACCGGCATAAACA+CGG + chr7_4:41489923-41489942 Msa1154130:three_prime_UTR 30.0%
! TTTTACTTAACTGCAAGACC+AGG + chr7_4:41487055-41487074 Msa1154130:CDS 35.0%
CTATCCACAACAAATTGCAT+TGG - chr7_4:41487118-41487137 None:intergenic 35.0%
TTGTGGATAGTTTATCTGGA+AGG + chr7_4:41487128-41487147 Msa1154130:CDS 35.0%
AAGAGGAGTGATTTCTTGAT+TGG + chr7_4:41487160-41487179 Msa1154130:CDS 35.0%
! TTCTTGATTGGTGGTAAGAT+AGG + chr7_4:41487172-41487191 Msa1154130:CDS 35.0%
!!! TTCTGCTGTTTTGGTAACAA+AGG + chr7_4:41487219-41487238 Msa1154130:CDS 35.0%
AAAGAGATGATGCTTAAGAG+TGG + chr7_4:41487247-41487266 Msa1154130:CDS 35.0%
ATGATGCTTAAGAGTGGAAA+AGG + chr7_4:41487253-41487272 Msa1154130:CDS 35.0%
TAAGAGTGGAAAAGGTAAGT+TGG + chr7_4:41487261-41487280 Msa1154130:CDS 35.0%
TCTCATAGCAGATTCAAGTA+CGG - chr7_4:41487440-41487459 None:intergenic 35.0%
TATGAGATTAATCCTCGAGT+TGG + chr7_4:41487453-41487472 Msa1154130:intron 35.0%
!!! CAGAACATCCGATTTTTTCA+CGG + chr7_4:41487479-41487498 Msa1154130:intron 35.0%
!!! AGAACATCCGATTTTTTCAC+GGG + chr7_4:41487480-41487499 Msa1154130:intron 35.0%
GTCAAATCCCGTGAAAAAAT+CGG - chr7_4:41487490-41487509 None:intergenic 35.0%
! AAGAATACGAGTTTGTTTCC+TGG - chr7_4:41487533-41487552 None:intergenic 35.0%
CAAAAATAGAAGCTGATCGA+TGG + chr7_4:41487685-41487704 Msa1154130:intron 35.0%
ATTGAAGGGGCTAAAGAATT+TGG + chr7_4:41487729-41487748 Msa1154130:CDS 35.0%
! AATTTGGTGATTGTGAAGAG+TGG + chr7_4:41487745-41487764 Msa1154130:CDS 35.0%
TACAAAACTTCCAAGGAACT+TGG - chr7_4:41487811-41487830 None:intergenic 35.0%
TATCAGCTACAAAACTTCCA+AGG - chr7_4:41487818-41487837 None:intergenic 35.0%
!! ATGGCTTGTTTGGAAATTTG+AGG + chr7_4:41487869-41487888 Msa1154130:CDS 35.0%
!! GTTCTGAACATTTTCAGTGT+TGG + chr7_4:41487954-41487973 Msa1154130:intron 35.0%
AACAGTAGGTGAAATGTGAT+TGG - chr7_4:41488083-41488102 None:intergenic 35.0%
GGCACTATAACAATATAGAG+CGG + chr7_4:41488105-41488124 Msa1154130:intron 35.0%
!!! TAGCGTCGCATTTTTTCATA+GGG - chr7_4:41488144-41488163 None:intergenic 35.0%
TACGCTAATAGAGTGAAACT+AGG - chr7_4:41488168-41488187 None:intergenic 35.0%
TGTGCCTAATTATACACCTT+TGG + chr7_4:41488649-41488668 Msa1154130:CDS 35.0%
! GGATCCAAAGGTGTATAATT+AGG - chr7_4:41488656-41488675 None:intergenic 35.0%
TGTGGTAGAACATATAGTTC+AGG - chr7_4:41488692-41488711 None:intergenic 35.0%
AATAAAACCTGCCACAAGAT+TGG - chr7_4:41488761-41488780 None:intergenic 35.0%
TTAGGCTGTTTATCCAAACA+GGG - chr7_4:41488806-41488825 None:intergenic 35.0%
ATTAGGCTGTTTATCCAAAC+AGG - chr7_4:41488807-41488826 None:intergenic 35.0%
TGGAATTGTACTCTTGCAAA+TGG + chr7_4:41489574-41489593 Msa1154130:CDS 35.0%
AAATGGCAATACCAACCTTA+AGG + chr7_4:41489591-41489610 Msa1154130:CDS 35.0%
CAGAATCACTATCAAGGATT+TGG - chr7_4:41489712-41489731 None:intergenic 35.0%
!! CAAATCCTTGATAGTGATTC+TGG + chr7_4:41489710-41489729 Msa1154130:CDS 35.0%
! TCTTCTTTCGGAACTTCTTT+TGG - chr7_4:41489768-41489787 None:intergenic 35.0%
!!! AGGCATCCTTATTTTCTTCT+AGG + chr7_4:41489815-41489834 Msa1154130:CDS 35.0%
!!! CATCCTTATTTTCTTCTAGG+TGG + chr7_4:41489818-41489837 Msa1154130:CDS 35.0%
TCACCACCTAGAAGAAAATA+AGG - chr7_4:41489824-41489843 None:intergenic 35.0%
TTATATACCGGCATAAACAC+GGG + chr7_4:41489924-41489943 Msa1154130:three_prime_UTR 35.0%
AAACAGCTTATGGCATGTAT+AGG - chr7_4:41489981-41490000 None:intergenic 35.0%
AATAAGCTGGAAACAGCTTA+TGG - chr7_4:41489991-41490010 None:intergenic 35.0%
!! CTTATTTTCGTAAGCTCTCT+TGG + chr7_4:41490005-41490024 Msa1154130:three_prime_UTR 35.0%
!! AATGGAGTGGTGAGTTTTAG+AGG - chr7_4:41486845-41486864 None:intergenic 40.0%
TAAGTTTCAGAGTGTGAGTG+AGG + chr7_4:41486979-41486998 Msa1154130:CDS 40.0%
AGGATTTATCAGACATGCAG+AGG + chr7_4:41486999-41487018 Msa1154130:CDS 40.0%
TTTATCAGACATGCAGAGGT+TGG + chr7_4:41487003-41487022 Msa1154130:CDS 40.0%
!!! TACTTTTTGTTGGACTGGCA+TGG + chr7_4:41487032-41487051 Msa1154130:CDS 40.0%
ATAGCACCAATAAGAACACC+TGG - chr7_4:41487076-41487095 None:intergenic 40.0%
AGGAGTGATTTCTTGATTGG+TGG + chr7_4:41487163-41487182 Msa1154130:CDS 40.0%
! ATTGGTGGTAAGATAGGAGA+AGG + chr7_4:41487178-41487197 Msa1154130:CDS 40.0%
! TTGGTGGTAAGATAGGAGAA+GGG + chr7_4:41487179-41487198 Msa1154130:CDS 40.0%
AAGATAGGAGAAGGGTCATT+TGG + chr7_4:41487187-41487206 Msa1154130:CDS 40.0%
AAACTCGTATTCTTTGCCTG+AGG + chr7_4:41487539-41487558 Msa1154130:intron 40.0%
AACTCGTATTCTTTGCCTGA+GGG + chr7_4:41487540-41487559 Msa1154130:intron 40.0%
AGGTGAAGGTTGGAATTGAA+GGG + chr7_4:41487715-41487734 Msa1154130:intron 40.0%
!! AAGGTGGAAAATGGCTTGTT+TGG + chr7_4:41487859-41487878 Msa1154130:CDS 40.0%
GATGATGCATAGGAAACCTA+TGG - chr7_4:41487930-41487949 None:intergenic 40.0%
! CAGAACTCATGATGATGCAT+AGG - chr7_4:41487940-41487959 None:intergenic 40.0%
TAGTATGGTACTAGACTCCA+AGG - chr7_4:41487992-41488011 None:intergenic 40.0%
TCACATTTCACCTACTGTTG+TGG + chr7_4:41488084-41488103 Msa1154130:intron 40.0%
TGTTATAGTGCCACAACAGT+AGG - chr7_4:41488097-41488116 None:intergenic 40.0%
!!! AGCGTCGCATTTTTTCATAG+GGG - chr7_4:41488143-41488162 None:intergenic 40.0%
!!! CTAGCGTCGCATTTTTTCAT+AGG - chr7_4:41488145-41488164 None:intergenic 40.0%
TCATGTAATCAGCAAGAGTG+CGG - chr7_4:41488376-41488395 None:intergenic 40.0%
ATGTTTCGAAATGCGTTGCA+AGG + chr7_4:41488431-41488450 Msa1154130:CDS 40.0%
! TTCGTAACAACCAAGTTGGA+AGG - chr7_4:41488566-41488585 None:intergenic 40.0%
GGTAGAACATATAGTTCAGG+AGG - chr7_4:41488689-41488708 None:intergenic 40.0%
GGAAGACTTTGTGTTTCTTG+TGG - chr7_4:41488710-41488729 None:intergenic 40.0%
CAAACAGGGCCTATATGAAT+AGG - chr7_4:41488792-41488811 None:intergenic 40.0%
CTATTCATATAGGCCCTGTT+TGG + chr7_4:41488790-41488809 Msa1154130:intron 40.0%
CTATTGTGTTTGCATCAGGA+AGG + chr7_4:41489093-41489112 Msa1154130:intron 40.0%
CAGGAAGGATATTCAGATTG+TGG + chr7_4:41489108-41489127 Msa1154130:intron 40.0%
TACACAGTCTGTTTGCTTGA+GGG - chr7_4:41489437-41489456 None:intergenic 40.0%
ATACACAGTCTGTTTGCTTG+AGG - chr7_4:41489438-41489457 None:intergenic 40.0%
CTCTACCAGAATCACTATCA+AGG - chr7_4:41489718-41489737 None:intergenic 40.0%
!! CTTGATAGTGATTCTGGTAG+AGG + chr7_4:41489716-41489735 Msa1154130:CDS 40.0%
ATAGTGATTCTGGTAGAGGT+TGG + chr7_4:41489720-41489739 Msa1154130:CDS 40.0%
TAGTGATTCTGGTAGAGGTT+GGG + chr7_4:41489721-41489740 Msa1154130:CDS 40.0%
! TTTTCTTCTAGGTGGTGATC+AGG + chr7_4:41489826-41489845 Msa1154130:CDS 40.0%
AGACTGCTTGAGAAAGCTTA+TGG + chr7_4:41489949-41489968 Msa1154130:three_prime_UTR 40.0%
GAGAGCTTACGAAAATAAGC+TGG - chr7_4:41490004-41490023 None:intergenic 40.0%
! TTTTCGTAAGCTCTCTTGGA+TGG + chr7_4:41490009-41490028 Msa1154130:three_prime_UTR 40.0%
GCAAGACCAGGTGTTCTTAT+TGG + chr7_4:41487067-41487086 Msa1154130:CDS 45.0%
!! GGCTCCAATGCAATTTGTTG+TGG + chr7_4:41487111-41487130 Msa1154130:CDS 45.0%
CTGGAAGGAGAGATTTGAAG+AGG + chr7_4:41487143-41487162 Msa1154130:CDS 45.0%
GTTTCCTGGAGTCACTCATT+TGG - chr7_4:41487519-41487538 None:intergenic 45.0%
AGCTGATCGATGGAAAATGC+AGG + chr7_4:41487695-41487714 Msa1154130:intron 45.0%
TCGATGGAAAATGCAGGTGA+AGG + chr7_4:41487701-41487720 Msa1154130:intron 45.0%
TGGAAAATGCAGGTGAAGGT+TGG + chr7_4:41487705-41487724 Msa1154130:intron 45.0%
CAGGTGAAGGTTGGAATTGA+AGG + chr7_4:41487714-41487733 Msa1154130:intron 45.0%
GGTGAAGGTTGGAATTGAAG+GGG + chr7_4:41487716-41487735 Msa1154130:intron 45.0%
AGGAACTTGGCACATGTTTC+AGG - chr7_4:41487798-41487817 None:intergenic 45.0%
GAAACATGTGCCAAGTTCCT+TGG + chr7_4:41487798-41487817 Msa1154130:CDS 45.0%
TTCTGCTAATGCTGCCACAT+CGG - chr7_4:41488220-41488239 None:intergenic 45.0%
ACGATACTGGCATTGTTCAC+AGG + chr7_4:41488531-41488550 Msa1154130:CDS 45.0%
CGATACTGGCATTGTTCACA+GGG + chr7_4:41488532-41488551 Msa1154130:CDS 45.0%
GGATGTAAAGCCTTCCAACT+TGG + chr7_4:41488553-41488572 Msa1154130:CDS 45.0%
GCAGCAACAGACCTTAGAAT+AGG + chr7_4:41488617-41488636 Msa1154130:CDS 45.0%
GGACAGTAATCAGGATCCAA+AGG - chr7_4:41488668-41488687 None:intergenic 45.0%
AGTTCAGGAGGACAGTAATC+AGG - chr7_4:41488677-41488696 None:intergenic 45.0%
!! AAAGCTGCAATTGGTTCTGG+AGG - chr7_4:41488731-41488750 None:intergenic 45.0%
! AGCAAAGCTGCAATTGGTTC+TGG - chr7_4:41488734-41488753 None:intergenic 45.0%
CTTTGCTCTCACCAATCTTG+TGG + chr7_4:41488747-41488766 Msa1154130:CDS 45.0%
CAAAGCAGCTTGAGACCTTA+AGG - chr7_4:41489609-41489628 None:intergenic 45.0%
! TATCTGCTGCTTCTGCTTTG+AGG + chr7_4:41489795-41489814 Msa1154130:CDS 45.0%
CCTGGAGTCACTCATTTGGA+AGG - chr7_4:41487515-41487534 None:intergenic 50.0%
CCTTCCAAATGAGTGACTCC+AGG + chr7_4:41487512-41487531 Msa1154130:intron 50.0%
! TGATAACGTGACTCTCCCTC+AGG - chr7_4:41487558-41487577 None:intergenic 50.0%
! CCACATCGGCTAGCAAAATC+TGG - chr7_4:41488206-41488225 None:intergenic 50.0%
! CCAGATTTTGCTAGCCGATG+TGG + chr7_4:41488203-41488222 Msa1154130:intron 50.0%
TGCAGGGTTGTCCATATCAC+AGG + chr7_4:41488346-41488365 Msa1154130:intron 50.0%
GCAGGGTTGTCCATATCACA+GGG + chr7_4:41488347-41488366 Msa1154130:intron 50.0%
GGTGAGAGCAAAGCTGCAAT+TGG - chr7_4:41488740-41488759 None:intergenic 50.0%
GCAGCTTGAGACCTTAAGGT+TGG - chr7_4:41489605-41489624 None:intergenic 50.0%
AGTCTCACCCGTGTTTATGC+CGG - chr7_4:41489934-41489953 None:intergenic 50.0%
GATGTTCTGCTGCCAACTCG+AGG - chr7_4:41487468-41487487 None:intergenic 55.0%
AGTGCGGTCTCCCTGTGATA+TGG - chr7_4:41488360-41488379 None:intergenic 55.0%
GCTCTCACCAATCTTGTGGC+AGG + chr7_4:41488751-41488770 Msa1154130:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 41486690 41490225 41486690 ID=Msa1154130;Name=Msa1154130
chr7_4 mRNA 41486690 41490225 41486690 ID=Msa1154130-mRNA-1;Parent=Msa1154130;Name=Msa1154130-mRNA-1;_AED=0.29;_eAED=0.29;_QI=83|1|1|1|1|1|4|336|491
chr7_4 exon 41486690 41487318 41486690 ID=Msa1154130-mRNA-1:exon:10065;Parent=Msa1154130-mRNA-1
chr7_4 exon 41487717 41487890 41487717 ID=Msa1154130-mRNA-1:exon:10066;Parent=Msa1154130-mRNA-1
chr7_4 exon 41488368 41488772 41488368 ID=Msa1154130-mRNA-1:exon:10067;Parent=Msa1154130-mRNA-1
chr7_4 exon 41489539 41490225 41489539 ID=Msa1154130-mRNA-1:exon:10068;Parent=Msa1154130-mRNA-1
chr7_4 five_prime_UTR 41486690 41486772 41486690 ID=Msa1154130-mRNA-1:five_prime_utr;Parent=Msa1154130-mRNA-1
chr7_4 CDS 41486773 41487318 41486773 ID=Msa1154130-mRNA-1:cds;Parent=Msa1154130-mRNA-1
chr7_4 CDS 41487717 41487890 41487717 ID=Msa1154130-mRNA-1:cds;Parent=Msa1154130-mRNA-1
chr7_4 CDS 41488368 41488772 41488368 ID=Msa1154130-mRNA-1:cds;Parent=Msa1154130-mRNA-1
chr7_4 CDS 41489539 41489889 41489539 ID=Msa1154130-mRNA-1:cds;Parent=Msa1154130-mRNA-1
chr7_4 three_prime_UTR 41489890 41490225 41489890 ID=Msa1154130-mRNA-1:three_prime_utr;Parent=Msa1154130-mRNA-1
Gene Sequence

>Msa1154130

ATGGCTTCCTTACTATCTACAACAACTACACCTACACTTCAACATACTCATAATAAAATCTGTTTCTCTCCTCTAAAACTCACCACTCCATTTAACAATTCTTTCTTAACAACAAACCTTTTCAACAAGAATCATTCTACAAGGTGCAATGCATTTTTTGACATCATCCCCAAAGACTTGTTATTGAACAATACATTTTATTTGGATAAGTTTCAGAGTGTGAGTGAGGATTTATCAGACATGCAGAGGTTGGAGATTTTACTTTTTGTTGGACTGGCATGGTTTTACTTAACTGCAAGACCAGGTGTTCTTATTGGTGCTATTGATGCATATCTTTTGGCTCCAATGCAATTTGTTGTGGATAGTTTATCTGGAAGGAGAGATTTGAAGAGGAGTGATTTCTTGATTGGTGGTAAGATAGGAGAAGGGTCATTTGGTGTTGTTTATTCTGCTGTTTTGGTAACAAAGGATGTGAAAGAGATGATGCTTAAGAGTGGAAAAGGTAAGTTGGATGCTAAATCTAAGGATAAAGTCATTCTTAAAAAGGTGAAGGTTGGAATTGAAGGGGCTAAAGAATTTGGTGATTGTGAAGAGTGGTTCAATTATAGACTCTCAAGAGCAGCTCCTGAAACATGTGCCAAGTTCCTTGGAAGTTTTGTAGCTGATAAAACCAATTCACAATTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGACCGCACTCTTGCTGATTACATGACAGATAAAAACTTCCCTTCAAACTTAGAATCTGTCATGTTTCGAAATGCGTTGCAAGGTGTAGACTCTTCTAAAAGAAATGCACTGATCATCAAGCAAATAATGCGCCAAATCATTACATCTCTTAAGAAAATTCACGATACTGGCATTGTTCACAGGGATGTAAAGCCTTCCAACTTGGTTGTTACGAAAAAAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTTAGAATAGGAAAGAATTATGTGCCTAATTATACACCTTTGGATCCTGATTACTGTCCTCCTGAACTATATGTTCTACCACAAGAAACACAAAGTCTTCCTCCAGAACCAATTGCAGCTTTGCTCTCACCAATCTTGTGGCAGTTAAACAGTCCTGATCTTTTTGATATGTATTCTGCTGGAATTGTACTCTTGCAAATGGCAATACCAACCTTAAGGTCTCAAGCTGCTTTGAAGAATTTCAATTTGGAAATGAGGACATATGGATATGATTTGAACAAATGGAGGGACTCTACTCGCATGAAGTCTAACTTCCAAATCCTTGATAGTGATTCTGGTAGAGGTTGGGACTTAGCATCAAAGCTTATCTCCAAAAGAAGTTCCGAAAGAAGAAAGCGTTTATCTGCTGCTTCTGCTTTGAGGCATCCTTATTTTCTTCTAGGTGGTGATCAGGCAGCTGCAGTTCTTTCAAAATTCAGCTTTAGCACAAAGTGA

Protein sequence

>Msa1154130

MASLLSTTTTPTLQHTHNKICFSPLKLTTPFNNSFLTTNLFNKNHSTRCNAFFDIIPKDLLLNNTFYLDKFQSVSEDLSDMQRLEILLFVGLAWFYLTARPGVLIGAIDAYLLAPMQFVVDSLSGRRDLKRSDFLIGGKIGEGSFGVVYSAVLVTKDVKEMMLKSGKGKLDAKSKDKVILKKVKVGIEGAKEFGDCEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMTDKNFPSNLESVMFRNALQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPSNLVVTKKGQIKLIDFGAATDLRIGKNYVPNYTPLDPDYCPPELYVLPQETQSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSQAALKNFNLEMRTYGYDLNKWRDSTRMKSNFQILDSDSGRGWDLASKLISKRSSERRKRLSAASALRHPYFLLGGDQAAAVLSKFSFSTK*