AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097490 MtrunA17_Chr1g0152491 91.146 192 15 2 2 193 1 190 5.29e-125 350
Msa0097490 MtrunA17_Chr7g0245211 41.611 149 74 2 47 185 97 242 2.59e-29 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097490 AT1G26220.1 62.434 189 64 4 2 185 1 187 1.90e-74 223
Msa0097490 AT1G32070.3 40.476 126 59 1 76 185 127 252 7.83e-26 100
Msa0097490 AT1G32070.1 39.370 127 60 1 76 185 126 252 6.70e-25 98.2
Msa0097490 AT1G32070.2 39.370 127 60 1 76 185 127 253 6.83e-25 98.2

Find 93 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTTAATTTCTTTAAAA+TGG 0.134335 1_3:-3315022 Msa0097490:three_prime_UTR
CTCCACTTATTCACGTTAAA+AGG 0.160301 1_3:-3315077 Msa0097490:three_prime_UTR
ATACTTTGTTAAGTGCTTCT+AGG 0.216082 1_3:+3317212 None:intergenic
GAGAGAGTAGACTCTGAAAA+AGG 0.218002 1_3:+3315388 None:intergenic
TACTCTGAGCCAAGAGTTCT+TGG 0.233326 1_3:-3316926 Msa0097490:CDS
AGAGTCTACTCTCTCTAGTT+TGG 0.277038 1_3:-3315380 Msa0097490:three_prime_UTR
CAAGAGGAATTTGAGAAATC+TGG 0.296177 1_3:-3316427 Msa0097490:CDS
AACAACAACATCCCATATTA+TGG 0.310068 1_3:+3317042 None:intergenic
TTGTCCCGAAGATGATTTAC+AGG 0.328544 1_3:-3315625 Msa0097490:three_prime_UTR
GTTGTTGATCCTTCGTTTCA+AGG 0.353170 1_3:-3317025 Msa0097490:CDS
AAAGGTGAGATTTCAATCAT+TGG 0.360168 1_3:-3315059 Msa0097490:three_prime_UTR
CTCAGAGTAAAGAGCAATAT+TGG 0.361910 1_3:+3316940 None:intergenic
GATCCTTCGTTTCAAGGGCT+TGG 0.366151 1_3:-3317019 Msa0097490:CDS
TTCATCCAGAGATGTGCTTT+TGG 0.368218 1_3:-3315349 Msa0097490:three_prime_UTR
AAGTTCCTGTAAATCATCTT+CGG 0.390419 1_3:+3315620 None:intergenic
GAAATCTGGGCACATCAAAA+AGG 0.398298 1_3:-3316413 Msa0097490:CDS
TCGTTTCAAGGGCTTGGACT+AGG 0.403696 1_3:-3317013 Msa0097490:CDS
CTGTTGTCGAGAGGCTTATG+AGG 0.408843 1_3:-3316985 Msa0097490:CDS
AAACACTCTCTCACCATAGA+AGG 0.415331 1_3:-3315414 Msa0097490:three_prime_UTR
CAAGCTGCAAACTCAAATAA+TGG 0.416111 1_3:-3316380 Msa0097490:exon
AAGTTAAGTCGTAGGGAGGA+TGG 0.419412 1_3:+3317370 None:intergenic
CGTTTCAAGGGCTTGGACTA+GGG 0.426846 1_3:-3317012 Msa0097490:CDS
CGATAAAAGCCAAGAACTCT+TGG 0.431331 1_3:+3316917 None:intergenic
AAAGATAATCCATTCCCAAT+AGG 0.439989 1_3:+3315256 None:intergenic
AATGGAGAGGAATGAGTTGC+GGG 0.440763 1_3:-3315479 Msa0097490:three_prime_UTR
TAGGCTTGCTTGACAAGAAA+TGG 0.442809 1_3:+3317312 None:intergenic
GAGATTGTATTATATATGTA+GGG 0.444355 1_3:-3315120 Msa0097490:three_prime_UTR
AGTTCCTGTAAATCATCTTC+GGG 0.445174 1_3:+3315621 None:intergenic
TGTATTATATATGTAGGGGC+GGG 0.457731 1_3:-3315115 Msa0097490:three_prime_UTR
ATTTACCAAAAGCACATCTC+TGG 0.461749 1_3:+3315344 None:intergenic
TATAATTTCAGAAAATGAAC+GGG 0.462438 1_3:-3315306 Msa0097490:three_prime_UTR
TATCTTTGTTGATGAGAGAA+TGG 0.469532 1_3:-3315240 Msa0097490:three_prime_UTR
AGAGATTGTATTATATATGT+AGG 0.471482 1_3:-3315121 Msa0097490:three_prime_UTR
TTGTTGATCCTTCGTTTCAA+GGG 0.483590 1_3:-3317024 Msa0097490:CDS
GTTGCATTTGCAAGAGCTAC+TGG 0.489343 1_3:-3317082 Msa0097490:CDS
TTTGTGGATGCAGTGGCAGA+TGG 0.489647 1_3:-3316189 Msa0097490:intron
ATTCTCCGCCGAACCGCAGA+GGG 0.489832 1_3:-3317241 Msa0097490:CDS
TAGCTTCTACCTATTGGGAA+TGG 0.490662 1_3:-3315265 Msa0097490:three_prime_UTR
GGTTTAACCCCTCTGCGGTT+CGG 0.494949 1_3:+3317233 None:intergenic
CGTGAATAAGTGGAGAATAC+AGG 0.495239 1_3:+3315085 None:intergenic
TTTGAAGAAGTTAAGTCGTA+GGG 0.496530 1_3:+3317363 None:intergenic
ATTCTGTTTGTCTCTCCTCT+CGG 0.502029 1_3:-3315546 Msa0097490:three_prime_UTR
TGTAACGCTGTGTATAGAAT+CGG 0.514058 1_3:+3315661 None:intergenic
AAGAGGAATTTGAGAAATCT+GGG 0.514312 1_3:-3316426 Msa0097490:CDS
TGAGGGATCTTGTAGGAAGA+GGG 0.520334 1_3:-3316967 Msa0097490:CDS
ACTCGAGCACACTGACTCAA+TGG 0.522170 1_3:-3317140 Msa0097490:CDS
ATTTGAAGAAGTTAAGTCGT+AGG 0.522993 1_3:+3317362 None:intergenic
AATCACCAAACCTTCAGAGT+TGG 0.523048 1_3:+3316353 None:intergenic
ATGAGGGATCTTGTAGGAAG+AGG 0.534453 1_3:-3316968 Msa0097490:CDS
GTATTATATATGTAGGGGCG+GGG 0.537727 1_3:-3315114 Msa0097490:three_prime_UTR
AGTCGTAGGGAGGATGGAAG+AGG 0.540218 1_3:+3317376 None:intergenic
ATATTGAGAGTGGGTAGTCT+AGG 0.541441 1_3:+3317293 None:intergenic
TGTAAATCATCTTCGGGACA+AGG 0.544700 1_3:+3315627 None:intergenic
CGCTGTGTATAGAATCGGAC+TGG 0.547628 1_3:+3315666 None:intergenic
AGGCTTATGAGGGATCTTGT+AGG 0.549706 1_3:-3316974 Msa0097490:CDS
TTTCATATCTCCCACGGCGT+GGG 0.550195 1_3:+3315434 None:intergenic
TGTGTTACAGTATCAATGAC+AGG 0.550272 1_3:-3315690 Msa0097490:intron
GTATAATTTCAGAAAATGAA+CGG 0.557241 1_3:-3315307 Msa0097490:three_prime_UTR
AGCACACTGACTCAATGGTA+TGG 0.558828 1_3:-3317135 Msa0097490:CDS
TTGTATTATATATGTAGGGG+CGG 0.560479 1_3:-3315116 Msa0097490:three_prime_UTR
ACAAAGTATTCGTAGCAGTA+GGG 0.561588 1_3:-3317198 Msa0097490:CDS
AACAAAGTATTCGTAGCAGT+AGG 0.566118 1_3:-3317199 Msa0097490:CDS
TTAACCCCTCTGCGGTTCGG+CGG 0.568840 1_3:+3317236 None:intergenic
TTGTGGATGCAGTGGCAGAT+GGG 0.569962 1_3:-3316188 Msa0097490:intron
GAAGAAGTTAAGTCGTAGGG+AGG 0.570827 1_3:+3317366 None:intergenic
ATGCAGTGGCAGATGGGTTG+AGG 0.581421 1_3:-3316182 Msa0097490:intron
CATTCTCCGCCGAACCGCAG+AGG 0.581744 1_3:-3317242 Msa0097490:CDS
AGGTGAGTTTCATATATGAA+AGG 0.582816 1_3:-3315192 Msa0097490:three_prime_UTR
TAATGGCAAACCAACTCTGA+AGG 0.585125 1_3:-3316363 Msa0097490:intron
GTTTCATATCTCCCACGGCG+TGG 0.585782 1_3:+3315433 None:intergenic
GTTTCGTCGGATATTGAGAG+TGG 0.593105 1_3:+3317283 None:intergenic
TTGCTTGACAAGAAATGGTG+AGG 0.596575 1_3:+3317317 None:intergenic
TAATGGAGAGGAATGAGTTG+CGG 0.604021 1_3:-3315480 Msa0097490:three_prime_UTR
TAAGCTCACTCCCACGCCGT+GGG 0.606449 1_3:-3315444 Msa0097490:three_prime_UTR
GATAATATGCTGCTCTTACG+TGG 0.618724 1_3:-3317412 None:intergenic
GTAAATCATCTTCGGGACAA+GGG 0.622918 1_3:+3315628 None:intergenic
AGTCCAAGCCCTTGAAACGA+AGG 0.624386 1_3:+3317016 None:intergenic
TGTTGTCGAGAGGCTTATGA+GGG 0.625783 1_3:-3316984 Msa0097490:CDS
AGATTGTATTATATATGTAG+GGG 0.635495 1_3:-3315119 Msa0097490:three_prime_UTR
TTTGCAAGAGCTACTGGTGA+TGG 0.636078 1_3:-3317076 Msa0097490:CDS
TTCTAGGTTTAACCCCTCTG+CGG 0.644451 1_3:+3317228 None:intergenic
TTTCGTCGGATATTGAGAGT+GGG 0.648674 1_3:+3317284 None:intergenic
AGAGTGTTTCATATCTCCCA+CGG 0.649696 1_3:+3315428 None:intergenic
ATGTGTTGATTGCAGGCAAG+AGG 0.650631 1_3:-3316443 Msa0097490:intron
TAGGGAAAGCTGTTGTCGAG+AGG 0.652617 1_3:-3316994 Msa0097490:CDS
CAATGGTATGGATACAAGAG+AGG 0.657246 1_3:-3317123 Msa0097490:CDS
TCGTAGCAGTAGGGTTTCCG+CGG 0.663293 1_3:-3317189 Msa0097490:CDS
ATAAGCTCACTCCCACGCCG+TGG 0.669119 1_3:-3315445 Msa0097490:three_prime_UTR
GGATCAGCAACAAAACCCAA+AGG 0.674227 1_3:+3316893 None:intergenic
GAGGAAGTCGCAGAATAATG+CGG 0.702415 1_3:-3317104 Msa0097490:CDS
GACGAAACCCTAGAAAAGCG+AGG 0.715831 1_3:-3317268 Msa0097490:CDS
TTCTCCGCCGAACCGCAGAG+GGG 0.756624 1_3:-3317240 Msa0097490:CDS
ATGTCACACAGAAAGCCGAG+AGG 0.763987 1_3:+3315531 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGCTAAATAAAGTTAA+TGG - chr1_3:3315715-3315734 Msa0097490:intron 15.0%
!! TTAAATTCGTTACATATTTA+AGG + chr1_3:3315813-3315832 None:intergenic 15.0%
!!! AATTTGTGATTGAAAATTTT+AGG - chr1_3:3316450-3316469 Msa0097490:intron 15.0%
!!! TTGAATTTATTGATTTCTTA+AGG - chr1_3:3316532-3316551 Msa0097490:intron 15.0%
!! ATAAAGCTAAATAAAGTTAA+TGG - chr1_3:3315715-3315734 Msa0097490:intron 15.0%
!! TTAAATTCGTTACATATTTA+AGG + chr1_3:3315813-3315832 None:intergenic 15.0%
!!! AATTTGTGATTGAAAATTTT+AGG - chr1_3:3316450-3316469 Msa0097490:intron 15.0%
!!! TTGAATTTATTGATTTCTTA+AGG - chr1_3:3316532-3316551 Msa0097490:intron 15.0%
!! CTTTATATCTATAAACTCTA+TGG + chr1_3:3315701-3315720 None:intergenic 20.0%
!! TAATGAAAGAGTCAATTTAA+GGG + chr1_3:3316110-3316129 None:intergenic 20.0%
!! ATAATGAAAGAGTCAATTTA+AGG + chr1_3:3316111-3316130 None:intergenic 20.0%
!!! TTTTGCCTTTTTTTTATTTG+TGG - chr1_3:3316191-3316210 Msa0097490:intron 20.0%
!!! TTGTTTAGCTTTATGATTTA+TGG - chr1_3:3316330-3316349 Msa0097490:intron 20.0%
!!! ATTTTAGGACTAATTGAATT+TGG - chr1_3:3316465-3316484 Msa0097490:intron 20.0%
!! AAATTCAATCTAAATCAAAC+AGG + chr1_3:3316520-3316539 None:intergenic 20.0%
!! GTATAATTTCAGAAAATGAA+CGG - chr1_3:3317089-3317108 Msa0097490:CDS 20.0%
!! TATAATTTCAGAAAATGAAC+GGG - chr1_3:3317090-3317109 Msa0097490:CDS 20.0%
!! AGAGATTGTATTATATATGT+AGG - chr1_3:3317275-3317294 Msa0097490:CDS 20.0%
!! GAGATTGTATTATATATGTA+GGG - chr1_3:3317276-3317295 Msa0097490:CDS 20.0%
!! AGATTGTATTATATATGTAG+GGG - chr1_3:3317277-3317296 Msa0097490:CDS 20.0%
!! CTTTATATCTATAAACTCTA+TGG + chr1_3:3315701-3315720 None:intergenic 20.0%
!! TAATGAAAGAGTCAATTTAA+GGG + chr1_3:3316110-3316129 None:intergenic 20.0%
!! ATAATGAAAGAGTCAATTTA+AGG + chr1_3:3316111-3316130 None:intergenic 20.0%
!!! TTTTGCCTTTTTTTTATTTG+TGG - chr1_3:3316191-3316210 Msa0097490:intron 20.0%
!!! TTGTTTAGCTTTATGATTTA+TGG - chr1_3:3316330-3316349 Msa0097490:intron 20.0%
!!! ATTTTAGGACTAATTGAATT+TGG - chr1_3:3316465-3316484 Msa0097490:intron 20.0%
!! AAATTCAATCTAAATCAAAC+AGG + chr1_3:3316520-3316539 None:intergenic 20.0%
!! GTATAATTTCAGAAAATGAA+CGG - chr1_3:3317089-3317108 Msa0097490:CDS 20.0%
!! TATAATTTCAGAAAATGAAC+GGG - chr1_3:3317090-3317109 Msa0097490:CDS 20.0%
!! AGAGATTGTATTATATATGT+AGG - chr1_3:3317275-3317294 Msa0097490:CDS 20.0%
!! GAGATTGTATTATATATGTA+GGG - chr1_3:3317276-3317295 Msa0097490:CDS 20.0%
!! AGATTGTATTATATATGTAG+GGG - chr1_3:3317277-3317296 Msa0097490:CDS 20.0%
!! TGTTTTCAATGCCATAATAT+GGG - chr1_3:3315343-3315362 Msa0097490:three_prime_UTR 25.0%
! AAGAATTGCTGAAAATAAAG+TGG + chr1_3:3316076-3316095 None:intergenic 25.0%
! ATGAGTGACATATAAAAATG+TGG + chr1_3:3316165-3316184 None:intergenic 25.0%
! TGCATCCACAAATAAAAAAA+AGG + chr1_3:3316199-3316218 None:intergenic 25.0%
!!! TTGTCTGTTGTTTTACATTT+AGG - chr1_3:3316250-3316269 Msa0097490:intron 25.0%
! TGATTTATGGAAGTTAACAA+CGG - chr1_3:3316343-3316362 Msa0097490:intron 25.0%
!!! TTCTTAAGGTATTGTAGATT+AGG - chr1_3:3316546-3316565 Msa0097490:intron 25.0%
! TGATATATGTTAACTGAGAA+AGG - chr1_3:3316596-3316615 Msa0097490:intron 25.0%
! ATGCATCTCTATTTATTGTT+TGG - chr1_3:3316652-3316671 Msa0097490:intron 25.0%
!!! ATTATGCGTTTTTTATGGAA+AGG + chr1_3:3316900-3316919 None:intergenic 25.0%
! TTTCCATAAAAAACGCATAA+TGG - chr1_3:3316899-3316918 Msa0097490:CDS 25.0%
! TCTACACAGTTGAATAAAAA+AGG - chr1_3:3317184-3317203 Msa0097490:CDS 25.0%
!! TGTTTTCAATGCCATAATAT+GGG - chr1_3:3315343-3315362 Msa0097490:three_prime_UTR 25.0%
! AAGAATTGCTGAAAATAAAG+TGG + chr1_3:3316076-3316095 None:intergenic 25.0%
! ATGAGTGACATATAAAAATG+TGG + chr1_3:3316165-3316184 None:intergenic 25.0%
! TGCATCCACAAATAAAAAAA+AGG + chr1_3:3316199-3316218 None:intergenic 25.0%
!!! TTGTCTGTTGTTTTACATTT+AGG - chr1_3:3316250-3316269 Msa0097490:intron 25.0%
! TGATTTATGGAAGTTAACAA+CGG - chr1_3:3316343-3316362 Msa0097490:intron 25.0%
!!! TTCTTAAGGTATTGTAGATT+AGG - chr1_3:3316546-3316565 Msa0097490:intron 25.0%
! TGATATATGTTAACTGAGAA+AGG - chr1_3:3316596-3316615 Msa0097490:intron 25.0%
! ATGCATCTCTATTTATTGTT+TGG - chr1_3:3316652-3316671 Msa0097490:intron 25.0%
!!! ATTATGCGTTTTTTATGGAA+AGG + chr1_3:3316900-3316919 None:intergenic 25.0%
! TTTCCATAAAAAACGCATAA+TGG - chr1_3:3316899-3316918 Msa0097490:CDS 25.0%
! TCTACACAGTTGAATAAAAA+AGG - chr1_3:3317184-3317203 Msa0097490:CDS 25.0%
TTTGAAGAAGTTAAGTCGTA+GGG + chr1_3:3315036-3315055 None:intergenic 30.0%
ATTTGAAGAAGTTAAGTCGT+AGG + chr1_3:3315037-3315056 None:intergenic 30.0%
ATACTTTGTTAAGTGCTTCT+AGG + chr1_3:3315187-3315206 None:intergenic 30.0%
! GTGTTTTCAATGCCATAATA+TGG - chr1_3:3315342-3315361 Msa0097490:three_prime_UTR 30.0%
AACAACAACATCCCATATTA+TGG + chr1_3:3315357-3315376 None:intergenic 30.0%
ACTTGTTTGAACTTATCTAG+TGG + chr1_3:3315777-3315796 None:intergenic 30.0%
GAATTTAAGCTTACATGTTG+AGG - chr1_3:3315825-3315844 Msa0097490:intron 30.0%
AAGAGGAATTTGAGAAATCT+GGG - chr1_3:3315970-3315989 Msa0097490:intron 30.0%
!!! TTTTTTATTTGTGGATGCAG+TGG - chr1_3:3316200-3316219 Msa0097490:intron 30.0%
GAACACATCAATATACTTAC+AGG - chr1_3:3316404-3316423 Msa0097490:CDS 30.0%
AAGTTCCTGTAAATCATCTT+CGG + chr1_3:3316779-3316798 None:intergenic 30.0%
!!! TCTCCATTATGCGTTTTTTA+TGG + chr1_3:3316905-3316924 None:intergenic 30.0%
! ATAAAAAACGCATAATGGAG+AGG - chr1_3:3316904-3316923 Msa0097490:CDS 30.0%
AAAGATAATCCATTCCCAAT+AGG + chr1_3:3317143-3317162 None:intergenic 30.0%
! TATCTTTGTTGATGAGAGAA+TGG - chr1_3:3317156-3317175 Msa0097490:CDS 30.0%
AGGTGAGTTTCATATATGAA+AGG - chr1_3:3317204-3317223 Msa0097490:CDS 30.0%
TTGTATTATATATGTAGGGG+CGG - chr1_3:3317280-3317299 Msa0097490:CDS 30.0%
AAAGGTGAGATTTCAATCAT+TGG - chr1_3:3317337-3317356 Msa0097490:CDS 30.0%
TTTGAAGAAGTTAAGTCGTA+GGG + chr1_3:3315036-3315055 None:intergenic 30.0%
ATTTGAAGAAGTTAAGTCGT+AGG + chr1_3:3315037-3315056 None:intergenic 30.0%
ATACTTTGTTAAGTGCTTCT+AGG + chr1_3:3315187-3315206 None:intergenic 30.0%
! GTGTTTTCAATGCCATAATA+TGG - chr1_3:3315342-3315361 Msa0097490:three_prime_UTR 30.0%
AACAACAACATCCCATATTA+TGG + chr1_3:3315357-3315376 None:intergenic 30.0%
ACTTGTTTGAACTTATCTAG+TGG + chr1_3:3315777-3315796 None:intergenic 30.0%
GAATTTAAGCTTACATGTTG+AGG - chr1_3:3315825-3315844 Msa0097490:intron 30.0%
AAGAGGAATTTGAGAAATCT+GGG - chr1_3:3315970-3315989 Msa0097490:intron 30.0%
!!! TTTTTTATTTGTGGATGCAG+TGG - chr1_3:3316200-3316219 Msa0097490:intron 30.0%
GAACACATCAATATACTTAC+AGG - chr1_3:3316404-3316423 Msa0097490:CDS 30.0%
AAGTTCCTGTAAATCATCTT+CGG + chr1_3:3316779-3316798 None:intergenic 30.0%
!!! TCTCCATTATGCGTTTTTTA+TGG + chr1_3:3316905-3316924 None:intergenic 30.0%
! ATAAAAAACGCATAATGGAG+AGG - chr1_3:3316904-3316923 Msa0097490:CDS 30.0%
AAAGATAATCCATTCCCAAT+AGG + chr1_3:3317143-3317162 None:intergenic 30.0%
! TATCTTTGTTGATGAGAGAA+TGG - chr1_3:3317156-3317175 Msa0097490:CDS 30.0%
AGGTGAGTTTCATATATGAA+AGG - chr1_3:3317204-3317223 Msa0097490:CDS 30.0%
TTGTATTATATATGTAGGGG+CGG - chr1_3:3317280-3317299 Msa0097490:CDS 30.0%
AAAGGTGAGATTTCAATCAT+TGG - chr1_3:3317337-3317356 Msa0097490:CDS 30.0%
!! AATGAAACCTCGCTTTTCTA+GGG + chr1_3:3315138-3315157 None:intergenic 35.0%
! AACAAAGTATTCGTAGCAGT+AGG - chr1_3:3315197-3315216 Msa0097490:three_prime_UTR 35.0%
! ACAAAGTATTCGTAGCAGTA+GGG - chr1_3:3315198-3315217 Msa0097490:three_prime_UTR 35.0%
TTGTTGATCCTTCGTTTCAA+GGG - chr1_3:3315372-3315391 Msa0097490:three_prime_UTR 35.0%
CTCAGAGTAAAGAGCAATAT+TGG + chr1_3:3315459-3315478 None:intergenic 35.0%
TTAAGCTTACATGTTGAGGT+CGG - chr1_3:3315829-3315848 Msa0097490:intron 35.0%
!! AACTTGTATGTGTTGATTGC+AGG - chr1_3:3315946-3315965 Msa0097490:intron 35.0%
CAAGAGGAATTTGAGAAATC+TGG - chr1_3:3315969-3315988 Msa0097490:intron 35.0%
CAAGCTGCAAACTCAAATAA+TGG - chr1_3:3316016-3316035 Msa0097490:intron 35.0%
ATTGATGTGTTCGATACAGT+AGG + chr1_3:3316396-3316415 None:intergenic 35.0%
TCACAAATTCAAATCAGTCC+AGG + chr1_3:3316439-3316458 None:intergenic 35.0%
TGTGTTACAGTATCAATGAC+AGG - chr1_3:3316706-3316725 Msa0097490:intron 35.0%
TGTAACGCTGTGTATAGAAT+CGG + chr1_3:3316738-3316757 None:intergenic 35.0%
AGTTCCTGTAAATCATCTTC+GGG + chr1_3:3316778-3316797 None:intergenic 35.0%
!!! ATGCGTTTTTTATGGAAAGG+CGG + chr1_3:3316897-3316916 None:intergenic 35.0%
! AGAGAGTAGACTCTGAAAAA+GGG + chr1_3:3317010-3317029 None:intergenic 35.0%
! ATTTACCAAAAGCACATCTC+TGG + chr1_3:3317055-3317074 None:intergenic 35.0%
!!! TGCTTTTAGCTTCTACCTAT+TGG - chr1_3:3317125-3317144 Msa0097490:CDS 35.0%
!!! GCTTTTAGCTTCTACCTATT+GGG - chr1_3:3317126-3317145 Msa0097490:CDS 35.0%
GAGAACATGAGAGAAAAAGA+TGG - chr1_3:3317252-3317271 Msa0097490:CDS 35.0%
TGTATTATATATGTAGGGGC+GGG - chr1_3:3317281-3317300 Msa0097490:CDS 35.0%
CTCCACTTATTCACGTTAAA+AGG - chr1_3:3317319-3317338 Msa0097490:CDS 35.0%
! CACCTTTTAACGTGAATAAG+TGG + chr1_3:3317324-3317343 None:intergenic 35.0%
!! AATGAAACCTCGCTTTTCTA+GGG + chr1_3:3315138-3315157 None:intergenic 35.0%
! AACAAAGTATTCGTAGCAGT+AGG - chr1_3:3315197-3315216 Msa0097490:three_prime_UTR 35.0%
! ACAAAGTATTCGTAGCAGTA+GGG - chr1_3:3315198-3315217 Msa0097490:three_prime_UTR 35.0%
TTGTTGATCCTTCGTTTCAA+GGG - chr1_3:3315372-3315391 Msa0097490:three_prime_UTR 35.0%
CTCAGAGTAAAGAGCAATAT+TGG + chr1_3:3315459-3315478 None:intergenic 35.0%
TTAAGCTTACATGTTGAGGT+CGG - chr1_3:3315829-3315848 Msa0097490:intron 35.0%
!! AACTTGTATGTGTTGATTGC+AGG - chr1_3:3315946-3315965 Msa0097490:intron 35.0%
CAAGAGGAATTTGAGAAATC+TGG - chr1_3:3315969-3315988 Msa0097490:intron 35.0%
CAAGCTGCAAACTCAAATAA+TGG - chr1_3:3316016-3316035 Msa0097490:intron 35.0%
ATTGATGTGTTCGATACAGT+AGG + chr1_3:3316396-3316415 None:intergenic 35.0%
TCACAAATTCAAATCAGTCC+AGG + chr1_3:3316439-3316458 None:intergenic 35.0%
TGTGTTACAGTATCAATGAC+AGG - chr1_3:3316706-3316725 Msa0097490:intron 35.0%
TGTAACGCTGTGTATAGAAT+CGG + chr1_3:3316738-3316757 None:intergenic 35.0%
AGTTCCTGTAAATCATCTTC+GGG + chr1_3:3316778-3316797 None:intergenic 35.0%
!!! ATGCGTTTTTTATGGAAAGG+CGG + chr1_3:3316897-3316916 None:intergenic 35.0%
! AGAGAGTAGACTCTGAAAAA+GGG + chr1_3:3317010-3317029 None:intergenic 35.0%
! ATTTACCAAAAGCACATCTC+TGG + chr1_3:3317055-3317074 None:intergenic 35.0%
!!! TGCTTTTAGCTTCTACCTAT+TGG - chr1_3:3317125-3317144 Msa0097490:CDS 35.0%
!!! GCTTTTAGCTTCTACCTATT+GGG - chr1_3:3317126-3317145 Msa0097490:CDS 35.0%
GAGAACATGAGAGAAAAAGA+TGG - chr1_3:3317252-3317271 Msa0097490:CDS 35.0%
TGTATTATATATGTAGGGGC+GGG - chr1_3:3317281-3317300 Msa0097490:CDS 35.0%
CTCCACTTATTCACGTTAAA+AGG - chr1_3:3317319-3317338 Msa0097490:CDS 35.0%
! CACCTTTTAACGTGAATAAG+TGG + chr1_3:3317324-3317343 None:intergenic 35.0%
TTGCTTGACAAGAAATGGTG+AGG + chr1_3:3315082-3315101 None:intergenic 40.0%
! TAGGCTTGCTTGACAAGAAA+TGG + chr1_3:3315087-3315106 None:intergenic 40.0%
ATATTGAGAGTGGGTAGTCT+AGG + chr1_3:3315106-3315125 None:intergenic 40.0%
TTTCGTCGGATATTGAGAGT+GGG + chr1_3:3315115-3315134 None:intergenic 40.0%
!! GAATGAAACCTCGCTTTTCT+AGG + chr1_3:3315139-3315158 None:intergenic 40.0%
CAATGGTATGGATACAAGAG+AGG - chr1_3:3315273-3315292 Msa0097490:three_prime_UTR 40.0%
GTTGTTGATCCTTCGTTTCA+AGG - chr1_3:3315371-3315390 Msa0097490:three_prime_UTR 40.0%
CGATAAAAGCCAAGAACTCT+TGG + chr1_3:3315482-3315501 None:intergenic 40.0%
!! TCTTGGCTTTTATCGACCTT+TGG - chr1_3:3315487-3315506 Msa0097490:three_prime_UTR 40.0%
!! CTTGGCTTTTATCGACCTTT+GGG - chr1_3:3315488-3315507 Msa0097490:three_prime_UTR 40.0%
TCCTGATGGTATTTGTGGAA+TGG - chr1_3:3315523-3315542 Msa0097490:three_prime_UTR 40.0%
ACCATTCCACAAATACCATC+AGG + chr1_3:3315527-3315546 None:intergenic 40.0%
TAAGCTTACATGTTGAGGTC+GGG - chr1_3:3315830-3315849 Msa0097490:intron 40.0%
GAAATCTGGGCACATCAAAA+AGG - chr1_3:3315983-3316002 Msa0097490:intron 40.0%
TAATGGCAAACCAACTCTGA+AGG - chr1_3:3316033-3316052 Msa0097490:intron 40.0%
AATCACCAAACCTTCAGAGT+TGG + chr1_3:3316046-3316065 None:intergenic 40.0%
!! GGAAGATTGATTTGCCTGAT+TGG - chr1_3:3316673-3316692 Msa0097490:intron 40.0%
CACAAGAAAAGAAGCCAATC+AGG + chr1_3:3316690-3316709 None:intergenic 40.0%
GTAAATCATCTTCGGGACAA+GGG + chr1_3:3316771-3316790 None:intergenic 40.0%
TGTAAATCATCTTCGGGACA+AGG + chr1_3:3316772-3316791 None:intergenic 40.0%
TTGTCCCGAAGATGATTTAC+AGG - chr1_3:3316771-3316790 Msa0097490:intron 40.0%
ATTCTGTTTGTCTCTCCTCT+CGG - chr1_3:3316850-3316869 Msa0097490:intron 40.0%
TAATGGAGAGGAATGAGTTG+CGG - chr1_3:3316916-3316935 Msa0097490:CDS 40.0%
! AGAGTGTTTCATATCTCCCA+CGG + chr1_3:3316971-3316990 None:intergenic 40.0%
AAACACTCTCTCACCATAGA+AGG - chr1_3:3316982-3317001 Msa0097490:CDS 40.0%
! GAGAGAGTAGACTCTGAAAA+AGG + chr1_3:3317011-3317030 None:intergenic 40.0%
AGAGTCTACTCTCTCTAGTT+TGG - chr1_3:3317016-3317035 Msa0097490:CDS 40.0%
! TTCATCCAGAGATGTGCTTT+TGG - chr1_3:3317047-3317066 Msa0097490:CDS 40.0%
TAGCTTCTACCTATTGGGAA+TGG - chr1_3:3317131-3317150 Msa0097490:CDS 40.0%
GTATTATATATGTAGGGGCG+GGG - chr1_3:3317282-3317301 Msa0097490:CDS 40.0%
CGTGAATAAGTGGAGAATAC+AGG + chr1_3:3317314-3317333 None:intergenic 40.0%
TTGCTTGACAAGAAATGGTG+AGG + chr1_3:3315082-3315101 None:intergenic 40.0%
! TAGGCTTGCTTGACAAGAAA+TGG + chr1_3:3315087-3315106 None:intergenic 40.0%
ATATTGAGAGTGGGTAGTCT+AGG + chr1_3:3315106-3315125 None:intergenic 40.0%
TTTCGTCGGATATTGAGAGT+GGG + chr1_3:3315115-3315134 None:intergenic 40.0%
!! GAATGAAACCTCGCTTTTCT+AGG + chr1_3:3315139-3315158 None:intergenic 40.0%
CAATGGTATGGATACAAGAG+AGG - chr1_3:3315273-3315292 Msa0097490:three_prime_UTR 40.0%
GTTGTTGATCCTTCGTTTCA+AGG - chr1_3:3315371-3315390 Msa0097490:three_prime_UTR 40.0%
CGATAAAAGCCAAGAACTCT+TGG + chr1_3:3315482-3315501 None:intergenic 40.0%
!! TCTTGGCTTTTATCGACCTT+TGG - chr1_3:3315487-3315506 Msa0097490:three_prime_UTR 40.0%
!! CTTGGCTTTTATCGACCTTT+GGG - chr1_3:3315488-3315507 Msa0097490:three_prime_UTR 40.0%
TCCTGATGGTATTTGTGGAA+TGG - chr1_3:3315523-3315542 Msa0097490:three_prime_UTR 40.0%
ACCATTCCACAAATACCATC+AGG + chr1_3:3315527-3315546 None:intergenic 40.0%
TAAGCTTACATGTTGAGGTC+GGG - chr1_3:3315830-3315849 Msa0097490:intron 40.0%
GAAATCTGGGCACATCAAAA+AGG - chr1_3:3315983-3316002 Msa0097490:intron 40.0%
TAATGGCAAACCAACTCTGA+AGG - chr1_3:3316033-3316052 Msa0097490:intron 40.0%
AATCACCAAACCTTCAGAGT+TGG + chr1_3:3316046-3316065 None:intergenic 40.0%
!! GGAAGATTGATTTGCCTGAT+TGG - chr1_3:3316673-3316692 Msa0097490:intron 40.0%
CACAAGAAAAGAAGCCAATC+AGG + chr1_3:3316690-3316709 None:intergenic 40.0%
GTAAATCATCTTCGGGACAA+GGG + chr1_3:3316771-3316790 None:intergenic 40.0%
TGTAAATCATCTTCGGGACA+AGG + chr1_3:3316772-3316791 None:intergenic 40.0%
TTGTCCCGAAGATGATTTAC+AGG - chr1_3:3316771-3316790 Msa0097490:intron 40.0%
ATTCTGTTTGTCTCTCCTCT+CGG - chr1_3:3316850-3316869 Msa0097490:intron 40.0%
TAATGGAGAGGAATGAGTTG+CGG - chr1_3:3316916-3316935 Msa0097490:CDS 40.0%
! AGAGTGTTTCATATCTCCCA+CGG + chr1_3:3316971-3316990 None:intergenic 40.0%
AAACACTCTCTCACCATAGA+AGG - chr1_3:3316982-3317001 Msa0097490:CDS 40.0%
! GAGAGAGTAGACTCTGAAAA+AGG + chr1_3:3317011-3317030 None:intergenic 40.0%
AGAGTCTACTCTCTCTAGTT+TGG - chr1_3:3317016-3317035 Msa0097490:CDS 40.0%
! TTCATCCAGAGATGTGCTTT+TGG - chr1_3:3317047-3317066 Msa0097490:CDS 40.0%
TAGCTTCTACCTATTGGGAA+TGG - chr1_3:3317131-3317150 Msa0097490:CDS 40.0%
GTATTATATATGTAGGGGCG+GGG - chr1_3:3317282-3317301 Msa0097490:CDS 40.0%
CGTGAATAAGTGGAGAATAC+AGG + chr1_3:3317314-3317333 None:intergenic 40.0%
AAGTTAAGTCGTAGGGAGGA+TGG + chr1_3:3315029-3315048 None:intergenic 45.0%
GAAGAAGTTAAGTCGTAGGG+AGG + chr1_3:3315033-3315052 None:intergenic 45.0%
GTTTCGTCGGATATTGAGAG+TGG + chr1_3:3315116-3315135 None:intergenic 45.0%
!!! TCGCTTTTCTAGGGTTTCGT+CGG + chr1_3:3315129-3315148 None:intergenic 45.0%
TTCTAGGTTTAACCCCTCTG+CGG + chr1_3:3315171-3315190 None:intergenic 45.0%
! GTGCAACGCGTATTTTCTCA+GGG + chr1_3:3315238-3315257 None:intergenic 45.0%
! AGTGCAACGCGTATTTTCTC+AGG + chr1_3:3315239-3315258 None:intergenic 45.0%
!! AGCACACTGACTCAATGGTA+TGG - chr1_3:3315261-3315280 Msa0097490:three_prime_UTR 45.0%
GAGGAAGTCGCAGAATAATG+CGG - chr1_3:3315292-3315311 Msa0097490:three_prime_UTR 45.0%
GTTGCATTTGCAAGAGCTAC+TGG - chr1_3:3315314-3315333 Msa0097490:three_prime_UTR 45.0%
TTTGCAAGAGCTACTGGTGA+TGG - chr1_3:3315320-3315339 Msa0097490:three_prime_UTR 45.0%
TGTTGTCGAGAGGCTTATGA+GGG - chr1_3:3315412-3315431 Msa0097490:three_prime_UTR 45.0%
AGGCTTATGAGGGATCTTGT+AGG - chr1_3:3315422-3315441 Msa0097490:three_prime_UTR 45.0%
ATGAGGGATCTTGTAGGAAG+AGG - chr1_3:3315428-3315447 Msa0097490:three_prime_UTR 45.0%
TGAGGGATCTTGTAGGAAGA+GGG - chr1_3:3315429-3315448 Msa0097490:three_prime_UTR 45.0%
TACTCTGAGCCAAGAGTTCT+TGG - chr1_3:3315470-3315489 Msa0097490:three_prime_UTR 45.0%
GGATCAGCAACAAAACCCAA+AGG + chr1_3:3315506-3315525 None:intergenic 45.0%
!!! GGTTTTGTTGCTGATCCTGA+TGG - chr1_3:3315509-3315528 Msa0097490:three_prime_UTR 45.0%
GCTGATCCTGATGGTATTTG+TGG - chr1_3:3315518-3315537 Msa0097490:three_prime_UTR 45.0%
!! ATGTGTTGATTGCAGGCAAG+AGG - chr1_3:3315953-3315972 Msa0097490:intron 45.0%
! GCAAACCAACTCTGAAGGTT+TGG - chr1_3:3316038-3316057 Msa0097490:intron 45.0%
ACTTACAGGCAAACATGACC+TGG - chr1_3:3316418-3316437 Msa0097490:CDS 45.0%
AATGGAGAGGAATGAGTTGC+GGG - chr1_3:3316917-3316936 Msa0097490:CDS 45.0%
!! CTGAAAAAGGGTGCCTTCTA+TGG + chr1_3:3316998-3317017 None:intergenic 45.0%
AAGTTAAGTCGTAGGGAGGA+TGG + chr1_3:3315029-3315048 None:intergenic 45.0%
GAAGAAGTTAAGTCGTAGGG+AGG + chr1_3:3315033-3315052 None:intergenic 45.0%
GTTTCGTCGGATATTGAGAG+TGG + chr1_3:3315116-3315135 None:intergenic 45.0%
!!! TCGCTTTTCTAGGGTTTCGT+CGG + chr1_3:3315129-3315148 None:intergenic 45.0%
TTCTAGGTTTAACCCCTCTG+CGG + chr1_3:3315171-3315190 None:intergenic 45.0%
! GTGCAACGCGTATTTTCTCA+GGG + chr1_3:3315238-3315257 None:intergenic 45.0%
! AGTGCAACGCGTATTTTCTC+AGG + chr1_3:3315239-3315258 None:intergenic 45.0%
!! AGCACACTGACTCAATGGTA+TGG - chr1_3:3315261-3315280 Msa0097490:three_prime_UTR 45.0%
GAGGAAGTCGCAGAATAATG+CGG - chr1_3:3315292-3315311 Msa0097490:three_prime_UTR 45.0%
GTTGCATTTGCAAGAGCTAC+TGG - chr1_3:3315314-3315333 Msa0097490:three_prime_UTR 45.0%
TTTGCAAGAGCTACTGGTGA+TGG - chr1_3:3315320-3315339 Msa0097490:three_prime_UTR 45.0%
TGTTGTCGAGAGGCTTATGA+GGG - chr1_3:3315412-3315431 Msa0097490:three_prime_UTR 45.0%
AGGCTTATGAGGGATCTTGT+AGG - chr1_3:3315422-3315441 Msa0097490:three_prime_UTR 45.0%
ATGAGGGATCTTGTAGGAAG+AGG - chr1_3:3315428-3315447 Msa0097490:three_prime_UTR 45.0%
TGAGGGATCTTGTAGGAAGA+GGG - chr1_3:3315429-3315448 Msa0097490:three_prime_UTR 45.0%
TACTCTGAGCCAAGAGTTCT+TGG - chr1_3:3315470-3315489 Msa0097490:three_prime_UTR 45.0%
GGATCAGCAACAAAACCCAA+AGG + chr1_3:3315506-3315525 None:intergenic 45.0%
!!! GGTTTTGTTGCTGATCCTGA+TGG - chr1_3:3315509-3315528 Msa0097490:three_prime_UTR 45.0%
GCTGATCCTGATGGTATTTG+TGG - chr1_3:3315518-3315537 Msa0097490:three_prime_UTR 45.0%
!! ATGTGTTGATTGCAGGCAAG+AGG - chr1_3:3315953-3315972 Msa0097490:intron 45.0%
! GCAAACCAACTCTGAAGGTT+TGG - chr1_3:3316038-3316057 Msa0097490:intron 45.0%
ACTTACAGGCAAACATGACC+TGG - chr1_3:3316418-3316437 Msa0097490:CDS 45.0%
AATGGAGAGGAATGAGTTGC+GGG - chr1_3:3316917-3316936 Msa0097490:CDS 45.0%
!! CTGAAAAAGGGTGCCTTCTA+TGG + chr1_3:3316998-3317017 None:intergenic 45.0%
!!! ATAATTTAATTTCTTTAAAA+TGG - chr1_3:3317374-3317393 Msa0097490:CDS 5.0%
!!! ATAATTTAATTTCTTTAAAA+TGG - chr1_3:3317374-3317393 Msa0097490:CDS 5.0%
GACGAAACCCTAGAAAAGCG+AGG - chr1_3:3315128-3315147 Msa0097490:three_prime_UTR 50.0%
!! ACTCGAGCACACTGACTCAA+TGG - chr1_3:3315256-3315275 Msa0097490:three_prime_UTR 50.0%
GATCCTTCGTTTCAAGGGCT+TGG - chr1_3:3315377-3315396 Msa0097490:three_prime_UTR 50.0%
AGTCCAAGCCCTTGAAACGA+AGG + chr1_3:3315383-3315402 None:intergenic 50.0%
TCGTTTCAAGGGCTTGGACT+AGG - chr1_3:3315383-3315402 Msa0097490:three_prime_UTR 50.0%
CGTTTCAAGGGCTTGGACTA+GGG - chr1_3:3315384-3315403 Msa0097490:three_prime_UTR 50.0%
TAGGGAAAGCTGTTGTCGAG+AGG - chr1_3:3315402-3315421 Msa0097490:three_prime_UTR 50.0%
CTGTTGTCGAGAGGCTTATG+AGG - chr1_3:3315411-3315430 Msa0097490:three_prime_UTR 50.0%
TTTGTGGATGCAGTGGCAGA+TGG - chr1_3:3316207-3316226 Msa0097490:intron 50.0%
TTGTGGATGCAGTGGCAGAT+GGG - chr1_3:3316208-3316227 Msa0097490:intron 50.0%
CGCTGTGTATAGAATCGGAC+TGG + chr1_3:3316733-3316752 None:intergenic 50.0%
ATGTCACACAGAAAGCCGAG+AGG + chr1_3:3316868-3316887 None:intergenic 50.0%
TTTCATATCTCCCACGGCGT+GGG + chr1_3:3316965-3316984 None:intergenic 50.0%
GACGAAACCCTAGAAAAGCG+AGG - chr1_3:3315128-3315147 Msa0097490:three_prime_UTR 50.0%
!! ACTCGAGCACACTGACTCAA+TGG - chr1_3:3315256-3315275 Msa0097490:three_prime_UTR 50.0%
GATCCTTCGTTTCAAGGGCT+TGG - chr1_3:3315377-3315396 Msa0097490:three_prime_UTR 50.0%
AGTCCAAGCCCTTGAAACGA+AGG + chr1_3:3315383-3315402 None:intergenic 50.0%
TCGTTTCAAGGGCTTGGACT+AGG - chr1_3:3315383-3315402 Msa0097490:three_prime_UTR 50.0%
CGTTTCAAGGGCTTGGACTA+GGG - chr1_3:3315384-3315403 Msa0097490:three_prime_UTR 50.0%
TAGGGAAAGCTGTTGTCGAG+AGG - chr1_3:3315402-3315421 Msa0097490:three_prime_UTR 50.0%
CTGTTGTCGAGAGGCTTATG+AGG - chr1_3:3315411-3315430 Msa0097490:three_prime_UTR 50.0%
TTTGTGGATGCAGTGGCAGA+TGG - chr1_3:3316207-3316226 Msa0097490:intron 50.0%
TTGTGGATGCAGTGGCAGAT+GGG - chr1_3:3316208-3316227 Msa0097490:intron 50.0%
CGCTGTGTATAGAATCGGAC+TGG + chr1_3:3316733-3316752 None:intergenic 50.0%
ATGTCACACAGAAAGCCGAG+AGG + chr1_3:3316868-3316887 None:intergenic 50.0%
TTTCATATCTCCCACGGCGT+GGG + chr1_3:3316965-3316984 None:intergenic 50.0%
AGTCGTAGGGAGGATGGAAG+AGG + chr1_3:3315023-3315042 None:intergenic 55.0%
GGTTTAACCCCTCTGCGGTT+CGG + chr1_3:3315166-3315185 None:intergenic 55.0%
TCGTAGCAGTAGGGTTTCCG+CGG - chr1_3:3315207-3315226 Msa0097490:three_prime_UTR 55.0%
!! ATGCAGTGGCAGATGGGTTG+AGG - chr1_3:3316214-3316233 Msa0097490:intron 55.0%
GTTTCATATCTCCCACGGCG+TGG + chr1_3:3316966-3316985 None:intergenic 55.0%
AGTCGTAGGGAGGATGGAAG+AGG + chr1_3:3315023-3315042 None:intergenic 55.0%
GGTTTAACCCCTCTGCGGTT+CGG + chr1_3:3315166-3315185 None:intergenic 55.0%
TCGTAGCAGTAGGGTTTCCG+CGG - chr1_3:3315207-3315226 Msa0097490:three_prime_UTR 55.0%
!! ATGCAGTGGCAGATGGGTTG+AGG - chr1_3:3316214-3316233 Msa0097490:intron 55.0%
GTTTCATATCTCCCACGGCG+TGG + chr1_3:3316966-3316985 None:intergenic 55.0%
ATTCTCCGCCGAACCGCAGA+GGG - chr1_3:3315155-3315174 Msa0097490:three_prime_UTR 60.0%
! TTAACCCCTCTGCGGTTCGG+CGG + chr1_3:3315163-3315182 None:intergenic 60.0%
! ATTTTCTCAGGGTCGCGCCG+CGG + chr1_3:3315227-3315246 None:intergenic 60.0%
ATAAGCTCACTCCCACGCCG+TGG - chr1_3:3316951-3316970 Msa0097490:CDS 60.0%
TAAGCTCACTCCCACGCCGT+GGG - chr1_3:3316952-3316971 Msa0097490:CDS 60.0%
ATTCTCCGCCGAACCGCAGA+GGG - chr1_3:3315155-3315174 Msa0097490:three_prime_UTR 60.0%
! TTAACCCCTCTGCGGTTCGG+CGG + chr1_3:3315163-3315182 None:intergenic 60.0%
! ATTTTCTCAGGGTCGCGCCG+CGG + chr1_3:3315227-3315246 None:intergenic 60.0%
ATAAGCTCACTCCCACGCCG+TGG - chr1_3:3316951-3316970 Msa0097490:CDS 60.0%
TAAGCTCACTCCCACGCCGT+GGG - chr1_3:3316952-3316971 Msa0097490:CDS 60.0%
CATTCTCCGCCGAACCGCAG+AGG - chr1_3:3315154-3315173 Msa0097490:three_prime_UTR 65.0%
TTCTCCGCCGAACCGCAGAG+GGG - chr1_3:3315156-3315175 Msa0097490:three_prime_UTR 65.0%
CATTCTCCGCCGAACCGCAG+AGG - chr1_3:3315154-3315173 Msa0097490:three_prime_UTR 65.0%
TTCTCCGCCGAACCGCAGAG+GGG - chr1_3:3315156-3315175 Msa0097490:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3314990 3317428 3314990 ID=Msa0097490;Name=Msa0097490
chr1_3 mRNA 3314990 3317428 3314990 ID=Msa0097490-mRNA-1;Parent=Msa0097490;Name=Msa0097490-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.66|0.75|1|0.33|0.5|4|784|202
chr1_3 exon 3314990 3315702 3314990 ID=Msa0097490-mRNA-1:exon:1020;Parent=Msa0097490-mRNA-1
chr1_3 exon 3316147 3316198 3316147 ID=Msa0097490-mRNA-1:exon:1019;Parent=Msa0097490-mRNA-1
chr1_3 exon 3316364 3316450 3316364 ID=Msa0097490-mRNA-1:exon:1018;Parent=Msa0097490-mRNA-1
chr1_3 exon 3316888 3317428 3316888 ID=Msa0097490-mRNA-1:exon:1017;Parent=Msa0097490-mRNA-1
chr1_3 CDS 3316888 3317428 3316888 ID=Msa0097490-mRNA-1:cds;Parent=Msa0097490-mRNA-1
chr1_3 CDS 3316383 3316450 3316383 ID=Msa0097490-mRNA-1:cds;Parent=Msa0097490-mRNA-1
chr1_3 three_prime_UTR 3316364 3316382 3316364 ID=Msa0097490-mRNA-1:three_prime_utr;Parent=Msa0097490-mRNA-1
chr1_3 three_prime_UTR 3316147 3316198 3316147 ID=Msa0097490-mRNA-1:three_prime_utr;Parent=Msa0097490-mRNA-1
chr1_3 three_prime_UTR 3314990 3315702 3314990 ID=Msa0097490-mRNA-1:three_prime_utr;Parent=Msa0097490-mRNA-1
Gene Sequence

>Msa0097490

ATGCTGCTCTTACGTGGCAACATCTATGCTCCTCTTCCATCCTCCCTACGACTTAACTTCTTCAAATCACAAACTCACTCACTACGAAACCTCACCATTTCTTGTCAAGCAAGCCTAGACTACCCACTCTCAATATCCGACGAAACCCTAGAAAAGCGAGGTTTCATTCTCCGCCGAACCGCAGAGGGGTTAAACCTAGAAGCACTTAACAAAGTATTCGTAGCAGTAGGGTTTCCGCGGCGCGACCCTGAGAAAATACGCGTTGCACTCGAGCACACTGACTCAATGGTATGGATACAAGAGAGGAAGTCGCAGAATAATGCGGTTGCATTTGCAAGAGCTACTGGTGATGGTGTTTTCAATGCCATAATATGGGATGTTGTTGTTGATCCTTCGTTTCAAGGGCTTGGACTAGGGAAAGCTGTTGTCGAGAGGCTTATGAGGGATCTTGTAGGAAGAGGGATTACCAATATTGCTCTTTACTCTGAGCCAAGAGTTCTTGGCTTTTATCGACCTTTGGGTTTTGTTGCTGATCCTGATGGCAAGAGGAATTTGAGAAATCTGGGCACATCAAAAAGGAATGTCAAAGCAAGCTGCAAACTCAAATAA

Protein sequence

>Msa0097490

MLLLRGNIYAPLPSSLRLNFFKSQTHSLRNLTISCQASLDYPLSISDETLEKRGFILRRTAEGLNLEALNKVFVAVGFPRRDPEKIRVALEHTDSMVWIQERKSQNNAVAFARATGDGVFNAIIWDVVVDPSFQGLGLGKAVVERLMRDLVGRGITNIALYSEPRVLGFYRPLGFVADPDGKRNLRNLGTSKRNVKASCKLK*