AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0067820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0067820 MtrunA17_Chr1g0152491 91.667 192 14 2 2 193 1 190 4.25e-126 353
Msa0067820 MtrunA17_Chr7g0245211 41.611 149 74 2 47 185 97 242 2.51e-29 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0067820 AT1G26220.1 61.979 192 60 5 2 185 1 187 1.74e-74 223
Msa0067820 AT1G32070.3 40.476 126 59 1 76 185 127 252 7.91e-26 100
Msa0067820 AT1G32070.1 39.370 127 60 1 76 185 126 252 7.28e-25 98.2
Msa0067820 AT1G32070.2 39.370 127 60 1 76 185 127 253 7.43e-25 98.2

Find 95 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTTAATTTCTTTAAAA+TGG 0.134335 1_2:-33135533 Msa0067820:three_prime_UTR
CTCCACTTATTCACGTTAAA+AGG 0.160301 1_2:-33135588 Msa0067820:three_prime_UTR
ATACTTTGTTAAGTGCTTCT+AGG 0.216082 1_2:+33137723 None:intergenic
GAGAGAGTAGACTCTGAAAA+AGG 0.218002 1_2:+33135899 None:intergenic
TACTCTGAGCCAAGAGTTCT+TGG 0.233326 1_2:-33137437 Msa0067820:CDS
AGAGTCTACTCTCTCTAGTT+TGG 0.277038 1_2:-33135891 Msa0067820:three_prime_UTR
CAAGAGGAATTTGAGAAATC+TGG 0.296177 1_2:-33136938 Msa0067820:CDS
AACAACAACATCCCATATTA+TGG 0.310068 1_2:+33137553 None:intergenic
TTGTCCCGAAGATGATTTAC+AGG 0.328544 1_2:-33136136 Msa0067820:three_prime_UTR
GTTGTTGATCCTTCGTTTCA+AGG 0.353170 1_2:-33137536 Msa0067820:CDS
AAAGGTGAGATTTCAATCAT+TGG 0.360168 1_2:-33135570 Msa0067820:three_prime_UTR
CTCAGAGTAAAGAGCAATAT+TGG 0.361910 1_2:+33137451 None:intergenic
GATCCTTCGTTTCAAGGGCT+TGG 0.366151 1_2:-33137530 Msa0067820:CDS
TTCATCCAGAGATGTGCTTT+TGG 0.368218 1_2:-33135860 Msa0067820:three_prime_UTR
AAGTTCCTGTAAATCATCTT+CGG 0.390419 1_2:+33136131 None:intergenic
GAAATCTGGGCACATCAAAA+AGG 0.398298 1_2:-33136924 Msa0067820:CDS
TCGTTTCAAGGGCTTGGACT+AGG 0.403696 1_2:-33137524 Msa0067820:CDS
CTGTTGTCGAGAGGCTTATG+AGG 0.408843 1_2:-33137496 Msa0067820:CDS
AAACACTCTCTCACCATAGA+AGG 0.415331 1_2:-33135925 Msa0067820:three_prime_UTR
CAAGCTGCAAACTCAAATAA+TGG 0.416111 1_2:-33136891 Msa0067820:exon
AAGTTAAGTCGTAGGGAGGA+TGG 0.419412 1_2:+33137881 None:intergenic
CGATAAAAGCCAAGAACTCT+TGG 0.421266 1_2:+33137428 None:intergenic
CGTTTCAAGGGCTTGGACTA+GGG 0.426846 1_2:-33137523 Msa0067820:CDS
AAAGATAATCCATTCCCAAT+AGG 0.439989 1_2:+33135767 None:intergenic
AATGGAGAGGAATGAGTTGC+GGG 0.440763 1_2:-33135990 Msa0067820:three_prime_UTR
TAGGCTTGCTTGACAAGAAA+TGG 0.442809 1_2:+33137823 None:intergenic
GAGATTGTATTATATATGTA+GGG 0.444355 1_2:-33135631 Msa0067820:three_prime_UTR
AGTTCCTGTAAATCATCTTC+GGG 0.445174 1_2:+33136132 None:intergenic
TGTATTATATATGTAGGGGC+GGG 0.457731 1_2:-33135626 Msa0067820:three_prime_UTR
ATTTACCAAAAGCACATCTC+TGG 0.461749 1_2:+33135855 None:intergenic
TATAATTTCAGAAAATGAAC+GGG 0.462438 1_2:-33135817 Msa0067820:three_prime_UTR
TATCTTTGTTGATGAGAGAA+TGG 0.469532 1_2:-33135751 Msa0067820:three_prime_UTR
AGAGATTGTATTATATATGT+AGG 0.471482 1_2:-33135632 Msa0067820:three_prime_UTR
TTGTTGATCCTTCGTTTCAA+GGG 0.483590 1_2:-33137535 Msa0067820:CDS
GTTGCATTTGCAAGAGCTAC+TGG 0.489343 1_2:-33137593 Msa0067820:CDS
TTTGTGGATGCAGTGGCAGA+TGG 0.489647 1_2:-33136700 Msa0067820:intron
ATTCTCCGCCGAACCGCAGA+GGG 0.489832 1_2:-33137752 Msa0067820:CDS
TAGCTTCTACCTATTGGGAA+TGG 0.490662 1_2:-33135776 Msa0067820:three_prime_UTR
GGTTTAACCCCTCTGCGGTT+CGG 0.494949 1_2:+33137744 None:intergenic
CGTGAATAAGTGGAGAATAC+AGG 0.495239 1_2:+33135596 None:intergenic
TTTGAAGAAGTTAAGTCGTA+GGG 0.496530 1_2:+33137874 None:intergenic
ATTCTGTTTGTCTCTCCTCT+CGG 0.502029 1_2:-33136057 Msa0067820:three_prime_UTR
TGTAACGCTGTGTATAGAAT+CGG 0.514058 1_2:+33136172 None:intergenic
AAGAGGAATTTGAGAAATCT+GGG 0.514312 1_2:-33136937 Msa0067820:CDS
TGAGGGATCTTGTAGGAAGA+GGG 0.520334 1_2:-33137478 Msa0067820:CDS
ACTCGAGCACACTGACTCAA+TGG 0.522170 1_2:-33137651 Msa0067820:CDS
ATTTGAAGAAGTTAAGTCGT+AGG 0.522993 1_2:+33137873 None:intergenic
AATCACCAAACCTTCAGAGT+TGG 0.523048 1_2:+33136864 None:intergenic
ATGAGGGATCTTGTAGGAAG+AGG 0.534453 1_2:-33137479 Msa0067820:CDS
GTATTATATATGTAGGGGCG+GGG 0.537727 1_2:-33135625 Msa0067820:three_prime_UTR
AGTCGTAGGGAGGATGGAAG+AGG 0.540218 1_2:+33137887 None:intergenic
ATATTGAGAGTGGGTAGTCT+AGG 0.541441 1_2:+33137804 None:intergenic
TGTAAATCATCTTCGGGACA+AGG 0.544700 1_2:+33136138 None:intergenic
CGCTGTGTATAGAATCGGAC+TGG 0.547628 1_2:+33136177 None:intergenic
AGGCTTATGAGGGATCTTGT+AGG 0.549706 1_2:-33137485 Msa0067820:CDS
TTTCATATCTCCCACGGCGT+GGG 0.550195 1_2:+33135945 None:intergenic
TGTGTTACAGTATCAATGAC+AGG 0.550272 1_2:-33136201 Msa0067820:intron
GTATAATTTCAGAAAATGAA+CGG 0.557241 1_2:-33135818 Msa0067820:three_prime_UTR
AGCACACTGACTCAATGGTA+TGG 0.558828 1_2:-33137646 Msa0067820:CDS
TTGTATTATATATGTAGGGG+CGG 0.560479 1_2:-33135627 Msa0067820:three_prime_UTR
ACAAAGTATTCGTAGCAGTA+GGG 0.561588 1_2:-33137709 Msa0067820:CDS
AAATGGTGAGGTTTCGTAGT+GGG 0.566008 1_2:+33137840 None:intergenic
AACAAAGTATTCGTAGCAGT+AGG 0.566118 1_2:-33137710 Msa0067820:CDS
TTAACCCCTCTGCGGTTCGG+CGG 0.568840 1_2:+33137747 None:intergenic
TTGTGGATGCAGTGGCAGAT+GGG 0.569962 1_2:-33136699 Msa0067820:intron
GAAGAAGTTAAGTCGTAGGG+AGG 0.570827 1_2:+33137877 None:intergenic
ATGCAGTGGCAGATGGGTTG+AGG 0.581421 1_2:-33136693 Msa0067820:intron
CATTCTCCGCCGAACCGCAG+AGG 0.581744 1_2:-33137753 Msa0067820:CDS
AGGTGAGTTTCATATATGAA+AGG 0.582816 1_2:-33135703 Msa0067820:three_prime_UTR
TAATGGCAAACCAACTCTGA+AGG 0.585125 1_2:-33136874 Msa0067820:intron
GTTTCATATCTCCCACGGCG+TGG 0.585782 1_2:+33135944 None:intergenic
GTTTCGTCGGATATTGAGAG+TGG 0.593105 1_2:+33137794 None:intergenic
TTGCTTGACAAGAAATGGTG+AGG 0.596575 1_2:+33137828 None:intergenic
TAATGGAGAGGAATGAGTTG+CGG 0.604021 1_2:-33135991 Msa0067820:three_prime_UTR
TAAGCTCACTCCCACGCCGT+GGG 0.606449 1_2:-33135955 Msa0067820:three_prime_UTR
GATAATATGCTGCTCTTACG+TGG 0.618724 1_2:-33137923 None:intergenic
GTAAATCATCTTCGGGACAA+GGG 0.622918 1_2:+33136139 None:intergenic
AGTCCAAGCCCTTGAAACGA+AGG 0.624386 1_2:+33137527 None:intergenic
TGTTGTCGAGAGGCTTATGA+GGG 0.625783 1_2:-33137495 Msa0067820:CDS
AGATTGTATTATATATGTAG+GGG 0.635495 1_2:-33135630 Msa0067820:three_prime_UTR
TTTGCAAGAGCTACTGGTGA+TGG 0.636078 1_2:-33137587 Msa0067820:CDS
TTCTAGGTTTAACCCCTCTG+CGG 0.644451 1_2:+33137739 None:intergenic
TTTCGTCGGATATTGAGAGT+GGG 0.648674 1_2:+33137795 None:intergenic
AGAGTGTTTCATATCTCCCA+CGG 0.649696 1_2:+33135939 None:intergenic
ATGTGTTGATTGCAGGCAAG+AGG 0.650631 1_2:-33136954 Msa0067820:intron
TAGGGAAAGCTGTTGTCGAG+AGG 0.652617 1_2:-33137505 Msa0067820:CDS
CAATGGTATGGATACAAGAG+AGG 0.657246 1_2:-33137634 Msa0067820:CDS
TCGTAGCAGTAGGGTTTCCG+CGG 0.663293 1_2:-33137700 Msa0067820:CDS
ATAAGCTCACTCCCACGCCG+TGG 0.669119 1_2:-33135956 Msa0067820:three_prime_UTR
GGATCAGCAACAAAACCCAA+AGG 0.684998 1_2:+33137404 None:intergenic
GAGGAAGTCGCAGAATAATG+CGG 0.702415 1_2:-33137615 Msa0067820:CDS
GAAATGGTGAGGTTTCGTAG+TGG 0.706232 1_2:+33137839 None:intergenic
GACGAAACCCTAGAAAAGCG+AGG 0.715831 1_2:-33137779 Msa0067820:CDS
TTCTCCGCCGAACCGCAGAG+GGG 0.756624 1_2:-33137751 Msa0067820:CDS
ATGTCACACAGAAAGCCGAG+AGG 0.763987 1_2:+33136042 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGCTAAATAAAGTTAA+TGG - chr1_2:33136226-33136245 Msa0067820:intron 15.0%
!! TTAAATTCGTTACATATTTA+AGG + chr1_2:33136324-33136343 None:intergenic 15.0%
!!! AATTTGTGATTGAAAATTTT+AGG - chr1_2:33136961-33136980 Msa0067820:intron 15.0%
!!! TTGAATTTATTGATTTCTTA+AGG - chr1_2:33137043-33137062 Msa0067820:intron 15.0%
!! ATAAAGCTAAATAAAGTTAA+TGG - chr1_2:33136226-33136245 Msa0067820:intron 15.0%
!! TTAAATTCGTTACATATTTA+AGG + chr1_2:33136324-33136343 None:intergenic 15.0%
!!! AATTTGTGATTGAAAATTTT+AGG - chr1_2:33136961-33136980 Msa0067820:intron 15.0%
!!! TTGAATTTATTGATTTCTTA+AGG - chr1_2:33137043-33137062 Msa0067820:intron 15.0%
!! CTTTATATCTATAAACTCTA+TGG + chr1_2:33136212-33136231 None:intergenic 20.0%
!! TAATGAAAGAGTCAATTTAA+GGG + chr1_2:33136621-33136640 None:intergenic 20.0%
!! ATAATGAAAGAGTCAATTTA+AGG + chr1_2:33136622-33136641 None:intergenic 20.0%
!!! TTTTGCCTTTTTTTTATTTG+TGG - chr1_2:33136702-33136721 Msa0067820:intron 20.0%
!!! TTGTTTAGCTTTATGATTTA+TGG - chr1_2:33136841-33136860 Msa0067820:intron 20.0%
!!! ATTTTAGGACTAATTGAATT+TGG - chr1_2:33136976-33136995 Msa0067820:intron 20.0%
!! AAATTCAATCTAAATCAAAC+AGG + chr1_2:33137031-33137050 None:intergenic 20.0%
!! GTATAATTTCAGAAAATGAA+CGG - chr1_2:33137600-33137619 Msa0067820:CDS 20.0%
!! TATAATTTCAGAAAATGAAC+GGG - chr1_2:33137601-33137620 Msa0067820:CDS 20.0%
!! TCTACACAATTGAATAAAAA+AGG - chr1_2:33137695-33137714 Msa0067820:CDS 20.0%
!! AGAGATTGTATTATATATGT+AGG - chr1_2:33137786-33137805 Msa0067820:CDS 20.0%
!! GAGATTGTATTATATATGTA+GGG - chr1_2:33137787-33137806 Msa0067820:CDS 20.0%
!! AGATTGTATTATATATGTAG+GGG - chr1_2:33137788-33137807 Msa0067820:CDS 20.0%
!! CTTTATATCTATAAACTCTA+TGG + chr1_2:33136212-33136231 None:intergenic 20.0%
!! TAATGAAAGAGTCAATTTAA+GGG + chr1_2:33136621-33136640 None:intergenic 20.0%
!! ATAATGAAAGAGTCAATTTA+AGG + chr1_2:33136622-33136641 None:intergenic 20.0%
!!! TTTTGCCTTTTTTTTATTTG+TGG - chr1_2:33136702-33136721 Msa0067820:intron 20.0%
!!! TTGTTTAGCTTTATGATTTA+TGG - chr1_2:33136841-33136860 Msa0067820:intron 20.0%
!!! ATTTTAGGACTAATTGAATT+TGG - chr1_2:33136976-33136995 Msa0067820:intron 20.0%
!! AAATTCAATCTAAATCAAAC+AGG + chr1_2:33137031-33137050 None:intergenic 20.0%
!! GTATAATTTCAGAAAATGAA+CGG - chr1_2:33137600-33137619 Msa0067820:CDS 20.0%
!! TATAATTTCAGAAAATGAAC+GGG - chr1_2:33137601-33137620 Msa0067820:CDS 20.0%
!! TCTACACAATTGAATAAAAA+AGG - chr1_2:33137695-33137714 Msa0067820:CDS 20.0%
!! AGAGATTGTATTATATATGT+AGG - chr1_2:33137786-33137805 Msa0067820:CDS 20.0%
!! GAGATTGTATTATATATGTA+GGG - chr1_2:33137787-33137806 Msa0067820:CDS 20.0%
!! AGATTGTATTATATATGTAG+GGG - chr1_2:33137788-33137807 Msa0067820:CDS 20.0%
!! TGTTTTCAATGCCATAATAT+GGG - chr1_2:33135854-33135873 Msa0067820:three_prime_UTR 25.0%
! AAGAATTGCTGAAAATAAAG+TGG + chr1_2:33136587-33136606 None:intergenic 25.0%
! ATGAGTGACATATAAAAATG+TGG + chr1_2:33136676-33136695 None:intergenic 25.0%
! TGCATCCACAAATAAAAAAA+AGG + chr1_2:33136710-33136729 None:intergenic 25.0%
!!! TTGTCTGTTGTTTTACATTT+AGG - chr1_2:33136761-33136780 Msa0067820:intron 25.0%
! TGATTTATGGAAGTTAACAA+CGG - chr1_2:33136854-33136873 Msa0067820:intron 25.0%
!!! TTCTTAAGGTATTGTAGATT+AGG - chr1_2:33137057-33137076 Msa0067820:intron 25.0%
! TGATATATGTTAACTGAGAA+AGG - chr1_2:33137107-33137126 Msa0067820:intron 25.0%
! ATGCATCTCTATTTATTGTT+TGG - chr1_2:33137163-33137182 Msa0067820:intron 25.0%
!!! ATTATGCGTTTTTTATGGAA+AGG + chr1_2:33137411-33137430 None:intergenic 25.0%
! TTTCCATAAAAAACGCATAA+TGG - chr1_2:33137410-33137429 Msa0067820:CDS 25.0%
!! TGTTTTCAATGCCATAATAT+GGG - chr1_2:33135854-33135873 Msa0067820:three_prime_UTR 25.0%
! AAGAATTGCTGAAAATAAAG+TGG + chr1_2:33136587-33136606 None:intergenic 25.0%
! ATGAGTGACATATAAAAATG+TGG + chr1_2:33136676-33136695 None:intergenic 25.0%
! TGCATCCACAAATAAAAAAA+AGG + chr1_2:33136710-33136729 None:intergenic 25.0%
!!! TTGTCTGTTGTTTTACATTT+AGG - chr1_2:33136761-33136780 Msa0067820:intron 25.0%
! TGATTTATGGAAGTTAACAA+CGG - chr1_2:33136854-33136873 Msa0067820:intron 25.0%
!!! TTCTTAAGGTATTGTAGATT+AGG - chr1_2:33137057-33137076 Msa0067820:intron 25.0%
! TGATATATGTTAACTGAGAA+AGG - chr1_2:33137107-33137126 Msa0067820:intron 25.0%
! ATGCATCTCTATTTATTGTT+TGG - chr1_2:33137163-33137182 Msa0067820:intron 25.0%
!!! ATTATGCGTTTTTTATGGAA+AGG + chr1_2:33137411-33137430 None:intergenic 25.0%
! TTTCCATAAAAAACGCATAA+TGG - chr1_2:33137410-33137429 Msa0067820:CDS 25.0%
TTTGAAGAAGTTAAGTCGTA+GGG + chr1_2:33135547-33135566 None:intergenic 30.0%
ATTTGAAGAAGTTAAGTCGT+AGG + chr1_2:33135548-33135567 None:intergenic 30.0%
ATACTTTGTTAAGTGCTTCT+AGG + chr1_2:33135698-33135717 None:intergenic 30.0%
! GTGTTTTCAATGCCATAATA+TGG - chr1_2:33135853-33135872 Msa0067820:three_prime_UTR 30.0%
AACAACAACATCCCATATTA+TGG + chr1_2:33135868-33135887 None:intergenic 30.0%
ACTTGTTTGAACTTATCTAG+TGG + chr1_2:33136288-33136307 None:intergenic 30.0%
GAATTTAAGCTTACATGTTG+AGG - chr1_2:33136336-33136355 Msa0067820:intron 30.0%
AAGAGGAATTTGAGAAATCT+GGG - chr1_2:33136481-33136500 Msa0067820:intron 30.0%
!!! TTTTTTATTTGTGGATGCAG+TGG - chr1_2:33136711-33136730 Msa0067820:intron 30.0%
GAACACATCAATATACTTAC+AGG - chr1_2:33136915-33136934 Msa0067820:CDS 30.0%
AAGTTCCTGTAAATCATCTT+CGG + chr1_2:33137290-33137309 None:intergenic 30.0%
!!! TCTCCATTATGCGTTTTTTA+TGG + chr1_2:33137416-33137435 None:intergenic 30.0%
! ATAAAAAACGCATAATGGAG+AGG - chr1_2:33137415-33137434 Msa0067820:CDS 30.0%
AAAGATAATCCATTCCCAAT+AGG + chr1_2:33137654-33137673 None:intergenic 30.0%
! TATCTTTGTTGATGAGAGAA+TGG - chr1_2:33137667-33137686 Msa0067820:CDS 30.0%
AGGTGAGTTTCATATATGAA+AGG - chr1_2:33137715-33137734 Msa0067820:CDS 30.0%
TTGTATTATATATGTAGGGG+CGG - chr1_2:33137791-33137810 Msa0067820:CDS 30.0%
AAAGGTGAGATTTCAATCAT+TGG - chr1_2:33137848-33137867 Msa0067820:CDS 30.0%
TTTGAAGAAGTTAAGTCGTA+GGG + chr1_2:33135547-33135566 None:intergenic 30.0%
ATTTGAAGAAGTTAAGTCGT+AGG + chr1_2:33135548-33135567 None:intergenic 30.0%
ATACTTTGTTAAGTGCTTCT+AGG + chr1_2:33135698-33135717 None:intergenic 30.0%
! GTGTTTTCAATGCCATAATA+TGG - chr1_2:33135853-33135872 Msa0067820:three_prime_UTR 30.0%
AACAACAACATCCCATATTA+TGG + chr1_2:33135868-33135887 None:intergenic 30.0%
ACTTGTTTGAACTTATCTAG+TGG + chr1_2:33136288-33136307 None:intergenic 30.0%
GAATTTAAGCTTACATGTTG+AGG - chr1_2:33136336-33136355 Msa0067820:intron 30.0%
AAGAGGAATTTGAGAAATCT+GGG - chr1_2:33136481-33136500 Msa0067820:intron 30.0%
!!! TTTTTTATTTGTGGATGCAG+TGG - chr1_2:33136711-33136730 Msa0067820:intron 30.0%
GAACACATCAATATACTTAC+AGG - chr1_2:33136915-33136934 Msa0067820:CDS 30.0%
AAGTTCCTGTAAATCATCTT+CGG + chr1_2:33137290-33137309 None:intergenic 30.0%
!!! TCTCCATTATGCGTTTTTTA+TGG + chr1_2:33137416-33137435 None:intergenic 30.0%
! ATAAAAAACGCATAATGGAG+AGG - chr1_2:33137415-33137434 Msa0067820:CDS 30.0%
AAAGATAATCCATTCCCAAT+AGG + chr1_2:33137654-33137673 None:intergenic 30.0%
! TATCTTTGTTGATGAGAGAA+TGG - chr1_2:33137667-33137686 Msa0067820:CDS 30.0%
AGGTGAGTTTCATATATGAA+AGG - chr1_2:33137715-33137734 Msa0067820:CDS 30.0%
TTGTATTATATATGTAGGGG+CGG - chr1_2:33137791-33137810 Msa0067820:CDS 30.0%
AAAGGTGAGATTTCAATCAT+TGG - chr1_2:33137848-33137867 Msa0067820:CDS 30.0%
!! AATGAAACCTCGCTTTTCTA+GGG + chr1_2:33135649-33135668 None:intergenic 35.0%
! AACAAAGTATTCGTAGCAGT+AGG - chr1_2:33135708-33135727 Msa0067820:three_prime_UTR 35.0%
! ACAAAGTATTCGTAGCAGTA+GGG - chr1_2:33135709-33135728 Msa0067820:three_prime_UTR 35.0%
TTGTTGATCCTTCGTTTCAA+GGG - chr1_2:33135883-33135902 Msa0067820:three_prime_UTR 35.0%
CTCAGAGTAAAGAGCAATAT+TGG + chr1_2:33135970-33135989 None:intergenic 35.0%
TTAAGCTTACATGTTGAGGT+CGG - chr1_2:33136340-33136359 Msa0067820:intron 35.0%
!! AACTTGTATGTGTTGATTGC+AGG - chr1_2:33136457-33136476 Msa0067820:intron 35.0%
CAAGAGGAATTTGAGAAATC+TGG - chr1_2:33136480-33136499 Msa0067820:intron 35.0%
CAAGCTGCAAACTCAAATAA+TGG - chr1_2:33136527-33136546 Msa0067820:intron 35.0%
ATTGATGTGTTCGATACAGT+AGG + chr1_2:33136907-33136926 None:intergenic 35.0%
TCACAAATTCAAATCAGTCC+AGG + chr1_2:33136950-33136969 None:intergenic 35.0%
TGTGTTACAGTATCAATGAC+AGG - chr1_2:33137217-33137236 Msa0067820:intron 35.0%
TGTAACGCTGTGTATAGAAT+CGG + chr1_2:33137249-33137268 None:intergenic 35.0%
AGTTCCTGTAAATCATCTTC+GGG + chr1_2:33137289-33137308 None:intergenic 35.0%
!!! ATGCGTTTTTTATGGAAAGG+CGG + chr1_2:33137408-33137427 None:intergenic 35.0%
! AGAGAGTAGACTCTGAAAAA+GGG + chr1_2:33137521-33137540 None:intergenic 35.0%
! ATTTACCAAAAGCACATCTC+TGG + chr1_2:33137566-33137585 None:intergenic 35.0%
!!! TGCTTTTAGCTTCTACCTAT+TGG - chr1_2:33137636-33137655 Msa0067820:CDS 35.0%
!!! GCTTTTAGCTTCTACCTATT+GGG - chr1_2:33137637-33137656 Msa0067820:CDS 35.0%
GAGAACATGAGAGAAAAAGA+TGG - chr1_2:33137763-33137782 Msa0067820:CDS 35.0%
TGTATTATATATGTAGGGGC+GGG - chr1_2:33137792-33137811 Msa0067820:CDS 35.0%
CTCCACTTATTCACGTTAAA+AGG - chr1_2:33137830-33137849 Msa0067820:CDS 35.0%
! CACCTTTTAACGTGAATAAG+TGG + chr1_2:33137835-33137854 None:intergenic 35.0%
!! AATGAAACCTCGCTTTTCTA+GGG + chr1_2:33135649-33135668 None:intergenic 35.0%
! AACAAAGTATTCGTAGCAGT+AGG - chr1_2:33135708-33135727 Msa0067820:three_prime_UTR 35.0%
! ACAAAGTATTCGTAGCAGTA+GGG - chr1_2:33135709-33135728 Msa0067820:three_prime_UTR 35.0%
TTGTTGATCCTTCGTTTCAA+GGG - chr1_2:33135883-33135902 Msa0067820:three_prime_UTR 35.0%
CTCAGAGTAAAGAGCAATAT+TGG + chr1_2:33135970-33135989 None:intergenic 35.0%
TTAAGCTTACATGTTGAGGT+CGG - chr1_2:33136340-33136359 Msa0067820:intron 35.0%
!! AACTTGTATGTGTTGATTGC+AGG - chr1_2:33136457-33136476 Msa0067820:intron 35.0%
CAAGAGGAATTTGAGAAATC+TGG - chr1_2:33136480-33136499 Msa0067820:intron 35.0%
CAAGCTGCAAACTCAAATAA+TGG - chr1_2:33136527-33136546 Msa0067820:intron 35.0%
ATTGATGTGTTCGATACAGT+AGG + chr1_2:33136907-33136926 None:intergenic 35.0%
TCACAAATTCAAATCAGTCC+AGG + chr1_2:33136950-33136969 None:intergenic 35.0%
TGTGTTACAGTATCAATGAC+AGG - chr1_2:33137217-33137236 Msa0067820:intron 35.0%
TGTAACGCTGTGTATAGAAT+CGG + chr1_2:33137249-33137268 None:intergenic 35.0%
AGTTCCTGTAAATCATCTTC+GGG + chr1_2:33137289-33137308 None:intergenic 35.0%
!!! ATGCGTTTTTTATGGAAAGG+CGG + chr1_2:33137408-33137427 None:intergenic 35.0%
! AGAGAGTAGACTCTGAAAAA+GGG + chr1_2:33137521-33137540 None:intergenic 35.0%
! ATTTACCAAAAGCACATCTC+TGG + chr1_2:33137566-33137585 None:intergenic 35.0%
!!! TGCTTTTAGCTTCTACCTAT+TGG - chr1_2:33137636-33137655 Msa0067820:CDS 35.0%
!!! GCTTTTAGCTTCTACCTATT+GGG - chr1_2:33137637-33137656 Msa0067820:CDS 35.0%
GAGAACATGAGAGAAAAAGA+TGG - chr1_2:33137763-33137782 Msa0067820:CDS 35.0%
TGTATTATATATGTAGGGGC+GGG - chr1_2:33137792-33137811 Msa0067820:CDS 35.0%
CTCCACTTATTCACGTTAAA+AGG - chr1_2:33137830-33137849 Msa0067820:CDS 35.0%
! CACCTTTTAACGTGAATAAG+TGG + chr1_2:33137835-33137854 None:intergenic 35.0%
AAATGGTGAGGTTTCGTAGT+GGG + chr1_2:33135581-33135600 None:intergenic 40.0%
TTGCTTGACAAGAAATGGTG+AGG + chr1_2:33135593-33135612 None:intergenic 40.0%
! TAGGCTTGCTTGACAAGAAA+TGG + chr1_2:33135598-33135617 None:intergenic 40.0%
ATATTGAGAGTGGGTAGTCT+AGG + chr1_2:33135617-33135636 None:intergenic 40.0%
TTTCGTCGGATATTGAGAGT+GGG + chr1_2:33135626-33135645 None:intergenic 40.0%
!! GAATGAAACCTCGCTTTTCT+AGG + chr1_2:33135650-33135669 None:intergenic 40.0%
CAATGGTATGGATACAAGAG+AGG - chr1_2:33135784-33135803 Msa0067820:three_prime_UTR 40.0%
GTTGTTGATCCTTCGTTTCA+AGG - chr1_2:33135882-33135901 Msa0067820:three_prime_UTR 40.0%
CGATAAAAGCCAAGAACTCT+TGG + chr1_2:33135993-33136012 None:intergenic 40.0%
!! TCTTGGCTTTTATCGTCCTT+TGG - chr1_2:33135998-33136017 Msa0067820:three_prime_UTR 40.0%
!! CTTGGCTTTTATCGTCCTTT+GGG - chr1_2:33135999-33136018 Msa0067820:three_prime_UTR 40.0%
TAAGCTTACATGTTGAGGTC+GGG - chr1_2:33136341-33136360 Msa0067820:intron 40.0%
GAAATCTGGGCACATCAAAA+AGG - chr1_2:33136494-33136513 Msa0067820:intron 40.0%
TAATGGCAAACCAACTCTGA+AGG - chr1_2:33136544-33136563 Msa0067820:intron 40.0%
AATCACCAAACCTTCAGAGT+TGG + chr1_2:33136557-33136576 None:intergenic 40.0%
!! GGAAGATTGATTTGCCTGAT+TGG - chr1_2:33137184-33137203 Msa0067820:intron 40.0%
CACAAGAAAAGAAGCCAATC+AGG + chr1_2:33137201-33137220 None:intergenic 40.0%
GTAAATCATCTTCGGGACAA+GGG + chr1_2:33137282-33137301 None:intergenic 40.0%
TGTAAATCATCTTCGGGACA+AGG + chr1_2:33137283-33137302 None:intergenic 40.0%
TTGTCCCGAAGATGATTTAC+AGG - chr1_2:33137282-33137301 Msa0067820:intron 40.0%
ATTCTGTTTGTCTCTCCTCT+CGG - chr1_2:33137361-33137380 Msa0067820:intron 40.0%
TAATGGAGAGGAATGAGTTG+CGG - chr1_2:33137427-33137446 Msa0067820:CDS 40.0%
! AGAGTGTTTCATATCTCCCA+CGG + chr1_2:33137482-33137501 None:intergenic 40.0%
AAACACTCTCTCACCATAGA+AGG - chr1_2:33137493-33137512 Msa0067820:CDS 40.0%
! GAGAGAGTAGACTCTGAAAA+AGG + chr1_2:33137522-33137541 None:intergenic 40.0%
AGAGTCTACTCTCTCTAGTT+TGG - chr1_2:33137527-33137546 Msa0067820:CDS 40.0%
! TTCATCCAGAGATGTGCTTT+TGG - chr1_2:33137558-33137577 Msa0067820:CDS 40.0%
TAGCTTCTACCTATTGGGAA+TGG - chr1_2:33137642-33137661 Msa0067820:CDS 40.0%
GTATTATATATGTAGGGGCG+GGG - chr1_2:33137793-33137812 Msa0067820:CDS 40.0%
CGTGAATAAGTGGAGAATAC+AGG + chr1_2:33137825-33137844 None:intergenic 40.0%
AAATGGTGAGGTTTCGTAGT+GGG + chr1_2:33135581-33135600 None:intergenic 40.0%
TTGCTTGACAAGAAATGGTG+AGG + chr1_2:33135593-33135612 None:intergenic 40.0%
! TAGGCTTGCTTGACAAGAAA+TGG + chr1_2:33135598-33135617 None:intergenic 40.0%
ATATTGAGAGTGGGTAGTCT+AGG + chr1_2:33135617-33135636 None:intergenic 40.0%
TTTCGTCGGATATTGAGAGT+GGG + chr1_2:33135626-33135645 None:intergenic 40.0%
!! GAATGAAACCTCGCTTTTCT+AGG + chr1_2:33135650-33135669 None:intergenic 40.0%
CAATGGTATGGATACAAGAG+AGG - chr1_2:33135784-33135803 Msa0067820:three_prime_UTR 40.0%
GTTGTTGATCCTTCGTTTCA+AGG - chr1_2:33135882-33135901 Msa0067820:three_prime_UTR 40.0%
CGATAAAAGCCAAGAACTCT+TGG + chr1_2:33135993-33136012 None:intergenic 40.0%
!! TCTTGGCTTTTATCGTCCTT+TGG - chr1_2:33135998-33136017 Msa0067820:three_prime_UTR 40.0%
!! CTTGGCTTTTATCGTCCTTT+GGG - chr1_2:33135999-33136018 Msa0067820:three_prime_UTR 40.0%
TAAGCTTACATGTTGAGGTC+GGG - chr1_2:33136341-33136360 Msa0067820:intron 40.0%
GAAATCTGGGCACATCAAAA+AGG - chr1_2:33136494-33136513 Msa0067820:intron 40.0%
TAATGGCAAACCAACTCTGA+AGG - chr1_2:33136544-33136563 Msa0067820:intron 40.0%
AATCACCAAACCTTCAGAGT+TGG + chr1_2:33136557-33136576 None:intergenic 40.0%
!! GGAAGATTGATTTGCCTGAT+TGG - chr1_2:33137184-33137203 Msa0067820:intron 40.0%
CACAAGAAAAGAAGCCAATC+AGG + chr1_2:33137201-33137220 None:intergenic 40.0%
GTAAATCATCTTCGGGACAA+GGG + chr1_2:33137282-33137301 None:intergenic 40.0%
TGTAAATCATCTTCGGGACA+AGG + chr1_2:33137283-33137302 None:intergenic 40.0%
TTGTCCCGAAGATGATTTAC+AGG - chr1_2:33137282-33137301 Msa0067820:intron 40.0%
ATTCTGTTTGTCTCTCCTCT+CGG - chr1_2:33137361-33137380 Msa0067820:intron 40.0%
TAATGGAGAGGAATGAGTTG+CGG - chr1_2:33137427-33137446 Msa0067820:CDS 40.0%
! AGAGTGTTTCATATCTCCCA+CGG + chr1_2:33137482-33137501 None:intergenic 40.0%
AAACACTCTCTCACCATAGA+AGG - chr1_2:33137493-33137512 Msa0067820:CDS 40.0%
! GAGAGAGTAGACTCTGAAAA+AGG + chr1_2:33137522-33137541 None:intergenic 40.0%
AGAGTCTACTCTCTCTAGTT+TGG - chr1_2:33137527-33137546 Msa0067820:CDS 40.0%
! TTCATCCAGAGATGTGCTTT+TGG - chr1_2:33137558-33137577 Msa0067820:CDS 40.0%
TAGCTTCTACCTATTGGGAA+TGG - chr1_2:33137642-33137661 Msa0067820:CDS 40.0%
GTATTATATATGTAGGGGCG+GGG - chr1_2:33137793-33137812 Msa0067820:CDS 40.0%
CGTGAATAAGTGGAGAATAC+AGG + chr1_2:33137825-33137844 None:intergenic 40.0%
AAGTTAAGTCGTAGGGAGGA+TGG + chr1_2:33135540-33135559 None:intergenic 45.0%
GAAGAAGTTAAGTCGTAGGG+AGG + chr1_2:33135544-33135563 None:intergenic 45.0%
GAAATGGTGAGGTTTCGTAG+TGG + chr1_2:33135582-33135601 None:intergenic 45.0%
GTTTCGTCGGATATTGAGAG+TGG + chr1_2:33135627-33135646 None:intergenic 45.0%
!!! TCGCTTTTCTAGGGTTTCGT+CGG + chr1_2:33135640-33135659 None:intergenic 45.0%
TTCTAGGTTTAACCCCTCTG+CGG + chr1_2:33135682-33135701 None:intergenic 45.0%
! GTGCAACGCGTATTTTCTCA+GGG + chr1_2:33135749-33135768 None:intergenic 45.0%
! AGTGCAACGCGTATTTTCTC+AGG + chr1_2:33135750-33135769 None:intergenic 45.0%
!! AGCACACTGACTCAATGGTA+TGG - chr1_2:33135772-33135791 Msa0067820:three_prime_UTR 45.0%
GAGGAAGTCGCAGAATAATG+CGG - chr1_2:33135803-33135822 Msa0067820:three_prime_UTR 45.0%
GTTGCATTTGCAAGAGCTAC+TGG - chr1_2:33135825-33135844 Msa0067820:three_prime_UTR 45.0%
TTTGCAAGAGCTACTGGTGA+TGG - chr1_2:33135831-33135850 Msa0067820:three_prime_UTR 45.0%
TGTTGTCGAGAGGCTTATGA+GGG - chr1_2:33135923-33135942 Msa0067820:three_prime_UTR 45.0%
AGGCTTATGAGGGATCTTGT+AGG - chr1_2:33135933-33135952 Msa0067820:three_prime_UTR 45.0%
ATGAGGGATCTTGTAGGAAG+AGG - chr1_2:33135939-33135958 Msa0067820:three_prime_UTR 45.0%
TGAGGGATCTTGTAGGAAGA+GGG - chr1_2:33135940-33135959 Msa0067820:three_prime_UTR 45.0%
TACTCTGAGCCAAGAGTTCT+TGG - chr1_2:33135981-33136000 Msa0067820:three_prime_UTR 45.0%
GGATCAGCAACAAAACCCAA+AGG + chr1_2:33136017-33136036 None:intergenic 45.0%
!!! GGTTTTGTTGCTGATCCTGA+TGG - chr1_2:33136020-33136039 Msa0067820:three_prime_UTR 45.0%
TCCTGATGGTATTCGTGGAA+TGG - chr1_2:33136034-33136053 Msa0067820:three_prime_UTR 45.0%
ACCATTCCACGAATACCATC+AGG + chr1_2:33136038-33136057 None:intergenic 45.0%
!! ATGTGTTGATTGCAGGCAAG+AGG - chr1_2:33136464-33136483 Msa0067820:intron 45.0%
! GCAAACCAACTCTGAAGGTT+TGG - chr1_2:33136549-33136568 Msa0067820:intron 45.0%
ACTTACAGGCAAACATGACC+TGG - chr1_2:33136929-33136948 Msa0067820:CDS 45.0%
AATGGAGAGGAATGAGTTGC+GGG - chr1_2:33137428-33137447 Msa0067820:CDS 45.0%
!! CTGAAAAAGGGTGCCTTCTA+TGG + chr1_2:33137509-33137528 None:intergenic 45.0%
AAGTTAAGTCGTAGGGAGGA+TGG + chr1_2:33135540-33135559 None:intergenic 45.0%
GAAGAAGTTAAGTCGTAGGG+AGG + chr1_2:33135544-33135563 None:intergenic 45.0%
GAAATGGTGAGGTTTCGTAG+TGG + chr1_2:33135582-33135601 None:intergenic 45.0%
GTTTCGTCGGATATTGAGAG+TGG + chr1_2:33135627-33135646 None:intergenic 45.0%
!!! TCGCTTTTCTAGGGTTTCGT+CGG + chr1_2:33135640-33135659 None:intergenic 45.0%
TTCTAGGTTTAACCCCTCTG+CGG + chr1_2:33135682-33135701 None:intergenic 45.0%
! GTGCAACGCGTATTTTCTCA+GGG + chr1_2:33135749-33135768 None:intergenic 45.0%
! AGTGCAACGCGTATTTTCTC+AGG + chr1_2:33135750-33135769 None:intergenic 45.0%
!! AGCACACTGACTCAATGGTA+TGG - chr1_2:33135772-33135791 Msa0067820:three_prime_UTR 45.0%
GAGGAAGTCGCAGAATAATG+CGG - chr1_2:33135803-33135822 Msa0067820:three_prime_UTR 45.0%
GTTGCATTTGCAAGAGCTAC+TGG - chr1_2:33135825-33135844 Msa0067820:three_prime_UTR 45.0%
TTTGCAAGAGCTACTGGTGA+TGG - chr1_2:33135831-33135850 Msa0067820:three_prime_UTR 45.0%
TGTTGTCGAGAGGCTTATGA+GGG - chr1_2:33135923-33135942 Msa0067820:three_prime_UTR 45.0%
AGGCTTATGAGGGATCTTGT+AGG - chr1_2:33135933-33135952 Msa0067820:three_prime_UTR 45.0%
ATGAGGGATCTTGTAGGAAG+AGG - chr1_2:33135939-33135958 Msa0067820:three_prime_UTR 45.0%
TGAGGGATCTTGTAGGAAGA+GGG - chr1_2:33135940-33135959 Msa0067820:three_prime_UTR 45.0%
TACTCTGAGCCAAGAGTTCT+TGG - chr1_2:33135981-33136000 Msa0067820:three_prime_UTR 45.0%
GGATCAGCAACAAAACCCAA+AGG + chr1_2:33136017-33136036 None:intergenic 45.0%
!!! GGTTTTGTTGCTGATCCTGA+TGG - chr1_2:33136020-33136039 Msa0067820:three_prime_UTR 45.0%
TCCTGATGGTATTCGTGGAA+TGG - chr1_2:33136034-33136053 Msa0067820:three_prime_UTR 45.0%
ACCATTCCACGAATACCATC+AGG + chr1_2:33136038-33136057 None:intergenic 45.0%
!! ATGTGTTGATTGCAGGCAAG+AGG - chr1_2:33136464-33136483 Msa0067820:intron 45.0%
! GCAAACCAACTCTGAAGGTT+TGG - chr1_2:33136549-33136568 Msa0067820:intron 45.0%
ACTTACAGGCAAACATGACC+TGG - chr1_2:33136929-33136948 Msa0067820:CDS 45.0%
AATGGAGAGGAATGAGTTGC+GGG - chr1_2:33137428-33137447 Msa0067820:CDS 45.0%
!! CTGAAAAAGGGTGCCTTCTA+TGG + chr1_2:33137509-33137528 None:intergenic 45.0%
!!! ATAATTTAATTTCTTTAAAA+TGG - chr1_2:33137885-33137904 Msa0067820:CDS 5.0%
!!! ATAATTTAATTTCTTTAAAA+TGG - chr1_2:33137885-33137904 Msa0067820:CDS 5.0%
GACGAAACCCTAGAAAAGCG+AGG - chr1_2:33135639-33135658 Msa0067820:three_prime_UTR 50.0%
!! ACTCGAGCACACTGACTCAA+TGG - chr1_2:33135767-33135786 Msa0067820:three_prime_UTR 50.0%
GATCCTTCGTTTCAAGGGCT+TGG - chr1_2:33135888-33135907 Msa0067820:three_prime_UTR 50.0%
AGTCCAAGCCCTTGAAACGA+AGG + chr1_2:33135894-33135913 None:intergenic 50.0%
TCGTTTCAAGGGCTTGGACT+AGG - chr1_2:33135894-33135913 Msa0067820:three_prime_UTR 50.0%
CGTTTCAAGGGCTTGGACTA+GGG - chr1_2:33135895-33135914 Msa0067820:three_prime_UTR 50.0%
TAGGGAAAGCTGTTGTCGAG+AGG - chr1_2:33135913-33135932 Msa0067820:three_prime_UTR 50.0%
CTGTTGTCGAGAGGCTTATG+AGG - chr1_2:33135922-33135941 Msa0067820:three_prime_UTR 50.0%
GCTGATCCTGATGGTATTCG+TGG - chr1_2:33136029-33136048 Msa0067820:three_prime_UTR 50.0%
TTTGTGGATGCAGTGGCAGA+TGG - chr1_2:33136718-33136737 Msa0067820:intron 50.0%
TTGTGGATGCAGTGGCAGAT+GGG - chr1_2:33136719-33136738 Msa0067820:intron 50.0%
CGCTGTGTATAGAATCGGAC+TGG + chr1_2:33137244-33137263 None:intergenic 50.0%
ATGTCACACAGAAAGCCGAG+AGG + chr1_2:33137379-33137398 None:intergenic 50.0%
TTTCATATCTCCCACGGCGT+GGG + chr1_2:33137476-33137495 None:intergenic 50.0%
GACGAAACCCTAGAAAAGCG+AGG - chr1_2:33135639-33135658 Msa0067820:three_prime_UTR 50.0%
!! ACTCGAGCACACTGACTCAA+TGG - chr1_2:33135767-33135786 Msa0067820:three_prime_UTR 50.0%
GATCCTTCGTTTCAAGGGCT+TGG - chr1_2:33135888-33135907 Msa0067820:three_prime_UTR 50.0%
AGTCCAAGCCCTTGAAACGA+AGG + chr1_2:33135894-33135913 None:intergenic 50.0%
TCGTTTCAAGGGCTTGGACT+AGG - chr1_2:33135894-33135913 Msa0067820:three_prime_UTR 50.0%
CGTTTCAAGGGCTTGGACTA+GGG - chr1_2:33135895-33135914 Msa0067820:three_prime_UTR 50.0%
TAGGGAAAGCTGTTGTCGAG+AGG - chr1_2:33135913-33135932 Msa0067820:three_prime_UTR 50.0%
CTGTTGTCGAGAGGCTTATG+AGG - chr1_2:33135922-33135941 Msa0067820:three_prime_UTR 50.0%
GCTGATCCTGATGGTATTCG+TGG - chr1_2:33136029-33136048 Msa0067820:three_prime_UTR 50.0%
TTTGTGGATGCAGTGGCAGA+TGG - chr1_2:33136718-33136737 Msa0067820:intron 50.0%
TTGTGGATGCAGTGGCAGAT+GGG - chr1_2:33136719-33136738 Msa0067820:intron 50.0%
CGCTGTGTATAGAATCGGAC+TGG + chr1_2:33137244-33137263 None:intergenic 50.0%
ATGTCACACAGAAAGCCGAG+AGG + chr1_2:33137379-33137398 None:intergenic 50.0%
TTTCATATCTCCCACGGCGT+GGG + chr1_2:33137476-33137495 None:intergenic 50.0%
AGTCGTAGGGAGGATGGAAG+AGG + chr1_2:33135534-33135553 None:intergenic 55.0%
GGTTTAACCCCTCTGCGGTT+CGG + chr1_2:33135677-33135696 None:intergenic 55.0%
TCGTAGCAGTAGGGTTTCCG+CGG - chr1_2:33135718-33135737 Msa0067820:three_prime_UTR 55.0%
!! ATGCAGTGGCAGATGGGTTG+AGG - chr1_2:33136725-33136744 Msa0067820:intron 55.0%
GTTTCATATCTCCCACGGCG+TGG + chr1_2:33137477-33137496 None:intergenic 55.0%
AGTCGTAGGGAGGATGGAAG+AGG + chr1_2:33135534-33135553 None:intergenic 55.0%
GGTTTAACCCCTCTGCGGTT+CGG + chr1_2:33135677-33135696 None:intergenic 55.0%
TCGTAGCAGTAGGGTTTCCG+CGG - chr1_2:33135718-33135737 Msa0067820:three_prime_UTR 55.0%
!! ATGCAGTGGCAGATGGGTTG+AGG - chr1_2:33136725-33136744 Msa0067820:intron 55.0%
GTTTCATATCTCCCACGGCG+TGG + chr1_2:33137477-33137496 None:intergenic 55.0%
ATTCTCCGCCGAACCGCAGA+GGG - chr1_2:33135666-33135685 Msa0067820:three_prime_UTR 60.0%
! TTAACCCCTCTGCGGTTCGG+CGG + chr1_2:33135674-33135693 None:intergenic 60.0%
! ATTTTCTCAGGGTCGCGCCG+CGG + chr1_2:33135738-33135757 None:intergenic 60.0%
ATAAGCTCACTCCCACGCCG+TGG - chr1_2:33137462-33137481 Msa0067820:CDS 60.0%
TAAGCTCACTCCCACGCCGT+GGG - chr1_2:33137463-33137482 Msa0067820:CDS 60.0%
ATTCTCCGCCGAACCGCAGA+GGG - chr1_2:33135666-33135685 Msa0067820:three_prime_UTR 60.0%
! TTAACCCCTCTGCGGTTCGG+CGG + chr1_2:33135674-33135693 None:intergenic 60.0%
! ATTTTCTCAGGGTCGCGCCG+CGG + chr1_2:33135738-33135757 None:intergenic 60.0%
ATAAGCTCACTCCCACGCCG+TGG - chr1_2:33137462-33137481 Msa0067820:CDS 60.0%
TAAGCTCACTCCCACGCCGT+GGG - chr1_2:33137463-33137482 Msa0067820:CDS 60.0%
CATTCTCCGCCGAACCGCAG+AGG - chr1_2:33135665-33135684 Msa0067820:three_prime_UTR 65.0%
TTCTCCGCCGAACCGCAGAG+GGG - chr1_2:33135667-33135686 Msa0067820:three_prime_UTR 65.0%
CATTCTCCGCCGAACCGCAG+AGG - chr1_2:33135665-33135684 Msa0067820:three_prime_UTR 65.0%
TTCTCCGCCGAACCGCAGAG+GGG - chr1_2:33135667-33135686 Msa0067820:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 33135501 33137939 33135501 ID=Msa0067820;Name=Msa0067820
chr1_2 mRNA 33135501 33137939 33135501 ID=Msa0067820-mRNA-1;Parent=Msa0067820;Name=Msa0067820-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.66|0.75|1|0.33|0.25|4|784|202
chr1_2 exon 33135501 33136213 33135501 ID=Msa0067820-mRNA-1:exon:10911;Parent=Msa0067820-mRNA-1
chr1_2 exon 33136658 33136709 33136658 ID=Msa0067820-mRNA-1:exon:10910;Parent=Msa0067820-mRNA-1
chr1_2 exon 33136875 33136961 33136875 ID=Msa0067820-mRNA-1:exon:10909;Parent=Msa0067820-mRNA-1
chr1_2 exon 33137399 33137939 33137399 ID=Msa0067820-mRNA-1:exon:10908;Parent=Msa0067820-mRNA-1
chr1_2 CDS 33137399 33137939 33137399 ID=Msa0067820-mRNA-1:cds;Parent=Msa0067820-mRNA-1
chr1_2 CDS 33136894 33136961 33136894 ID=Msa0067820-mRNA-1:cds;Parent=Msa0067820-mRNA-1
chr1_2 three_prime_UTR 33136875 33136893 33136875 ID=Msa0067820-mRNA-1:three_prime_utr;Parent=Msa0067820-mRNA-1
chr1_2 three_prime_UTR 33136658 33136709 33136658 ID=Msa0067820-mRNA-1:three_prime_utr;Parent=Msa0067820-mRNA-1
chr1_2 three_prime_UTR 33135501 33136213 33135501 ID=Msa0067820-mRNA-1:three_prime_utr;Parent=Msa0067820-mRNA-1
Gene Sequence

>Msa0067820

ATGCTGCTCTTACGTGGCAACATCTATGCTCCTCTTCCATCCTCCCTACGACTTAACTTCTTCAAATCACAAACTCACCCACTACGAAACCTCACCATTTCTTGTCAAGCAAGCCTAGACTACCCACTCTCAATATCCGACGAAACCCTAGAAAAGCGAGGTTTCATTCTCCGCCGAACCGCAGAGGGGTTAAACCTAGAAGCACTTAACAAAGTATTCGTAGCAGTAGGGTTTCCGCGGCGCGACCCTGAGAAAATACGCGTTGCACTCGAGCACACTGACTCAATGGTATGGATACAAGAGAGGAAGTCGCAGAATAATGCGGTTGCATTTGCAAGAGCTACTGGTGATGGTGTTTTCAATGCCATAATATGGGATGTTGTTGTTGATCCTTCGTTTCAAGGGCTTGGACTAGGGAAAGCTGTTGTCGAGAGGCTTATGAGGGATCTTGTAGGAAGAGGGATTACCAATATTGCTCTTTACTCTGAGCCAAGAGTTCTTGGCTTTTATCGTCCTTTGGGTTTTGTTGCTGATCCTGATGGCAAGAGGAATTTGAGAAATCTGGGCACATCAAAAAGGAATGTCAAAGCAAGCTGCAAACTCAAATAA

Protein sequence

>Msa0067820

MLLLRGNIYAPLPSSLRLNFFKSQTHPLRNLTISCQASLDYPLSISDETLEKRGFILRRTAEGLNLEALNKVFVAVGFPRRDPEKIRVALEHTDSMVWIQERKSQNNAVAFARATGDGVFNAIIWDVVVDPSFQGLGLGKAVVERLMRDLVGRGITNIALYSEPRVLGFYRPLGFVADPDGKRNLRNLGTSKRNVKASCKLK*