AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221580 MtrunA17_Chr4g0073071 95.804 143 5 1 3 145 2 143 5.55e-99 280
Msa1221580 MtrunA17_Chr4g0073051 81.132 53 10 0 73 125 1 53 5.60e-24 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221580 AT4G28025.1 55.147 136 55 3 13 143 19 153 1.34e-42 139
Msa1221580 AT4G28025.2 54.815 135 48 2 13 143 19 144 3.55e-42 137

Find 58 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATTAATTGCCTCAATT+TGG 0.217949 8_1:-85210190 None:intergenic
CCGATTGTTGTTGCTTGATA+TGG 0.260980 8_1:+85210917 Msa1221580:three_prime_UTR
TGCTTGACTCTGGGTTCTAT+TGG 0.273238 8_1:-85209312 None:intergenic
TTTGTGAATATATTTGTTAA+AGG 0.278243 8_1:+85210775 Msa1221580:three_prime_UTR
CGCCAAATTGAGGCAATTAA+TGG 0.290415 8_1:+85210188 Msa1221580:CDS
TTGTTAAAGGTTTACTGATA+AGG 0.351493 8_1:+85210788 Msa1221580:three_prime_UTR
GAAAGATTAAGTTGATTAGA+TGG 0.354541 8_1:+85211020 Msa1221580:three_prime_UTR
GGAAGGGAATTGAGCGTTGT+TGG 0.358874 8_1:-85208320 None:intergenic
ATAGAAAGCAGAAAAGAAGT+TGG 0.362107 8_1:+85208240 None:intergenic
CTTAATCTTTCTTCACAGTA+AGG 0.378715 8_1:-85211008 None:intergenic
AATAAGTAGCGAAAATTGTA+TGG 0.384156 8_1:-85210830 None:intergenic
AATTGAGCGTTGTTGGATAG+AGG 0.398480 8_1:-85208313 None:intergenic
CTAGTTATTGAAGGTCAAAC+TGG 0.408273 8_1:+85210242 Msa1221580:CDS
GTTACATATGTAGCATTGAT+AGG 0.417228 8_1:-85210865 None:intergenic
TTTAATTATCTCCATTTGTT+CGG 0.418482 8_1:-85210049 None:intergenic
GTAGCGAAAATTGTATGGTT+TGG 0.419912 8_1:-85210825 None:intergenic
AATGGAGCTTGGGCAATGAT+TGG 0.426888 8_1:+85210206 Msa1221580:CDS
GCGATTGGCTGCCGAACAAA+TGG 0.433796 8_1:+85210038 Msa1221580:CDS
TCTCAGCTGCAAGACTACTT+TGG 0.437019 8_1:+85210668 Msa1221580:intron
TTGAGGCAATTAATGGAGCT+TGG 0.452490 8_1:+85210195 Msa1221580:CDS
TGAGGCAATTAATGGAGCTT+GGG 0.452983 8_1:+85210196 Msa1221580:CDS
TAGAAAGCAGAAAAGAAGTT+GGG 0.458823 8_1:+85208241 None:intergenic
ATAATTATACAGGTATCTTC+AGG 0.464483 8_1:+85209964 Msa1221580:intron
CCATATCAAGCAACAACAAT+CGG 0.488739 8_1:-85210917 None:intergenic
GGACTCGAAATGCTTGACTC+TGG 0.489914 8_1:-85209322 None:intergenic
GCCAATCGCTTGGCTTCCAC+AGG 0.490320 8_1:-85210024 None:intergenic
AAAGCGAAGGTGTGAGCAAT+GGG 0.491935 8_1:+85208271 Msa1221580:exon
TGGTGGGTGTGATGAAAGGA+AGG 0.494555 8_1:-85208337 None:intergenic
TTAATCTTTCTTCACAGTAA+GGG 0.497494 8_1:-85211007 None:intergenic
TGCATACATTGGGATTAGCT+AGG 0.502437 8_1:-85209343 None:intergenic
TAATCTTTCTTCACAGTAAG+GGG 0.505362 8_1:-85211006 None:intergenic
TGAAATTACTTGGCGGTGGT+CGG 0.516726 8_1:-85208367 None:intergenic
TGTGAAGTAGACAGCCGAAA+AGG 0.518778 8_1:+85210709 Msa1221580:exon
TTGTTCGGCAGCCAATCGCT+TGG 0.519239 8_1:-85210034 None:intergenic
GACTCGAAATGCTTGACTCT+GGG 0.527834 8_1:-85209321 None:intergenic
ACAGCGGGTCTAGTTATTGA+AGG 0.529878 8_1:+85210233 Msa1221580:CDS
AGCAGAAAAGAAGTTGGGAA+AGG 0.539758 8_1:+85208246 Msa1221580:five_prime_UTR
TAAAGCGAAGGTGTGAGCAA+TGG 0.554147 8_1:+85208270 Msa1221580:exon
GTTGTTGGATAGAGGAAGAG+TGG 0.561270 8_1:-85208305 None:intergenic
CAGGTATCTTCAGGAAAGGA+TGG 0.562970 8_1:+85209973 Msa1221580:intron
TGGAGAAGAGAGCAATATGC+TGG 0.566450 8_1:+85209281 Msa1221580:CDS
CGGTGGTCGGAAAAGAGTGG+TGG 0.568189 8_1:-85208354 None:intergenic
AACAATAAATGCCACCACCT+CGG 0.568872 8_1:-85210963 None:intergenic
GGCAATGATTGGTCTAACAG+CGG 0.572593 8_1:+85210217 Msa1221580:CDS
AAGAGAGCAATATGCTGGCA+TGG 0.578828 8_1:+85209286 Msa1221580:CDS
GTAGAAAAGACGCCAAATTG+AGG 0.581143 8_1:+85210178 Msa1221580:intron
AGAGTGGTGGGTGTGATGAA+AGG 0.588914 8_1:-85208341 None:intergenic
GCAATGATTGGTCTAACAGC+GGG 0.589959 8_1:+85210218 Msa1221580:CDS
TCCTGTGGAAGCCAAGCGAT+TGG 0.590043 8_1:+85210023 Msa1221580:CDS
TAGACAGCCGAAAAGGAGCA+TGG 0.595353 8_1:+85210716 Msa1221580:exon
TGTAGCATTGATAGGCAACA+AGG 0.603035 8_1:-85210857 None:intergenic
GGTGGTCGGAAAAGAGTGGT+GGG 0.609303 8_1:-85208353 None:intergenic
TATACAGGTATCTTCAGGAA+AGG 0.610775 8_1:+85209969 Msa1221580:intron
AGAGTGAAATTACTTGGCGG+TGG 0.619832 8_1:-85208371 None:intergenic
TGTAATCATGGTTGATCCTG+TGG 0.620604 8_1:+85210008 Msa1221580:CDS
GTTGGGAAAGGATAAAGCGA+AGG 0.628301 8_1:+85208258 Msa1221580:five_prime_UTR
TGGCGGTGGTCGGAAAAGAG+TGG 0.650155 8_1:-85208357 None:intergenic
GGTGGGTGTGATGAAAGGAA+GGG 0.678716 8_1:-85208336 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACATTAAAGTAATAAA+TGG + chr8_1:85209073-85209092 Msa1221580:intron 10.0%
!! ATAAAATAACCATCAATAAT+AGG - chr8_1:85208523-85208542 None:intergenic 15.0%
!! ATATAAATAATAAACCACAA+TGG + chr8_1:85209111-85209130 Msa1221580:intron 15.0%
!! AAATTAGAAAAAATACAGAT+TGG - chr8_1:85210406-85210425 None:intergenic 15.0%
!!! ATTTTATTAAAGTAAACCAA+AGG + chr8_1:85210428-85210447 Msa1221580:intron 15.0%
!!! TTTGTGAATATATTTGTTAA+AGG + chr8_1:85210775-85210794 Msa1221580:three_prime_UTR 15.0%
!! TAATTTGAGAATAGAAGATT+CGG + chr8_1:85208477-85208496 Msa1221580:intron 20.0%
!!! TGATGGTTATTTTATAAAGT+AGG + chr8_1:85208528-85208547 Msa1221580:intron 20.0%
!!! CTTTAAAAAATAGATAGACA+AGG - chr8_1:85208562-85208581 None:intergenic 20.0%
!! TATAAATTTGTATTCCATTG+TGG - chr8_1:85209128-85209147 None:intergenic 20.0%
!! TAATTAGCAATAACAAAACA+AGG - chr8_1:85209230-85209249 None:intergenic 20.0%
!!! TTTTATGTTGAAAACTATCT+AGG + chr8_1:85209453-85209472 Msa1221580:intron 20.0%
!!! GAATTTATTTTGTCATAGAA+AGG - chr8_1:85209886-85209905 None:intergenic 20.0%
!! AGATCTACATATAATTATAC+AGG + chr8_1:85209954-85209973 Msa1221580:intron 20.0%
!! TTTAATTATCTCCATTTGTT+CGG - chr8_1:85210052-85210071 None:intergenic 20.0%
!!! TCTCAAATTCATGTTTTTTG+AGG + chr8_1:85208412-85208431 Msa1221580:intron 25.0%
! AATTTGAGAATAGAAGATTC+GGG + chr8_1:85208478-85208497 Msa1221580:intron 25.0%
!! AGTGTTATTCCTATTATTGA+TGG + chr8_1:85208511-85208530 Msa1221580:intron 25.0%
!! TCATAAAGTTTGCAAGTTTT+AGG + chr8_1:85208593-85208612 Msa1221580:intron 25.0%
! AGATTATATTATCCTAACCA+AGG - chr8_1:85208629-85208648 None:intergenic 25.0%
!!! AGGATGCGTATTTTTTTTAA+TGG - chr8_1:85208821-85208840 None:intergenic 25.0%
! CTCAGAAAACTAAATTCTAA+AGG - chr8_1:85208841-85208860 None:intergenic 25.0%
!!! CTTTAGAATTTAGTTTTCTG+AGG + chr8_1:85208839-85208858 Msa1221580:intron 25.0%
! GAAATCTAACAGATAATTGT+TGG + chr8_1:85209156-85209175 Msa1221580:intron 25.0%
! GTTCAATTTATGCATACATT+GGG - chr8_1:85209356-85209375 None:intergenic 25.0%
! TGTTCAATTTATGCATACAT+TGG - chr8_1:85209357-85209376 None:intergenic 25.0%
!! ACTGATCTTTTATATGAGAT+TGG + chr8_1:85209408-85209427 Msa1221580:intron 25.0%
!! AAATATGTTGACTATAGCAT+AGG - chr8_1:85209559-85209578 None:intergenic 25.0%
! TCAAAATTTAAGAGGATAAC+AGG + chr8_1:85209621-85209640 Msa1221580:intron 25.0%
! ATAATTATACAGGTATCTTC+AGG + chr8_1:85209964-85209983 Msa1221580:intron 25.0%
! TTCAAAAAAGGATGTAATCA+TGG + chr8_1:85209996-85210015 Msa1221580:CDS 25.0%
! TAAAGCAAAAGAAAAACTCA+AGG + chr8_1:85210068-85210087 Msa1221580:CDS 25.0%
! TTGTTAAAGGTTTACTGATA+AGG + chr8_1:85210788-85210807 Msa1221580:three_prime_UTR 25.0%
! AATAAGTAGCGAAAATTGTA+TGG - chr8_1:85210833-85210852 None:intergenic 25.0%
! TTAATCTTTCTTCACAGTAA+GGG - chr8_1:85211010-85211029 None:intergenic 25.0%
!!! GAAAGATTAAGTTGATTAGA+TGG + chr8_1:85211020-85211039 Msa1221580:three_prime_UTR 25.0%
TTGAGAAGAAAGAAGTGAAA+GGG - chr8_1:85208398-85208417 None:intergenic 30.0%
TTTGAGAAGAAAGAAGTGAA+AGG - chr8_1:85208399-85208418 None:intergenic 30.0%
ATTTGAGAATAGAAGATTCG+GGG + chr8_1:85208479-85208498 Msa1221580:intron 30.0%
AAATAGATAGACAAGGACAA+TGG - chr8_1:85208555-85208574 None:intergenic 30.0%
!!! TTTTAGGATTTACACAACCT+TGG + chr8_1:85208609-85208628 Msa1221580:intron 30.0%
AAAAGCTTCATGAATTCTCT+AGG + chr8_1:85209020-85209039 Msa1221580:intron 30.0%
ATCGAAAAAATGACAGACAT+CGG - chr8_1:85209050-85209069 None:intergenic 30.0%
!! GATATTAACCTCGTTGTTTT+AGG + chr8_1:85209252-85209271 Msa1221580:intron 30.0%
ACTGTGTATTTGTGTATTGT+TGG + chr8_1:85209376-85209395 Msa1221580:intron 30.0%
!! ATATGAGATTGGTTGTTTCT+CGG + chr8_1:85209419-85209438 Msa1221580:intron 30.0%
TATCTAGGTATGATCTCAAA+TGG + chr8_1:85209468-85209487 Msa1221580:intron 30.0%
GCTATAGTCAACATATTTAC+TGG + chr8_1:85209561-85209580 Msa1221580:intron 30.0%
GCACAAAAATACAAATGTAC+AGG + chr8_1:85209583-85209602 Msa1221580:intron 30.0%
TGGTAGGTTCAAAATTTAAG+AGG + chr8_1:85209613-85209632 Msa1221580:intron 30.0%
TTTAAGAGGATAACAGGATA+TGG + chr8_1:85209627-85209646 Msa1221580:intron 30.0%
AGTGGGAATTATAGACTTAT+AGG + chr8_1:85209699-85209718 Msa1221580:intron 30.0%
! TTTTGTCATAGAAAGGTAGA+AGG - chr8_1:85209879-85209898 None:intergenic 30.0%
ATGAAAAGAAAACCGCAAAA+GGG - chr8_1:85209922-85209941 None:intergenic 30.0%
AATGAAAAGAAAACCGCAAA+AGG - chr8_1:85209923-85209942 None:intergenic 30.0%
GGTAAGTTTATAGTAAACTG+AGG - chr8_1:85210141-85210160 None:intergenic 30.0%
CTACAATCACAACATAAAGT+TGG - chr8_1:85210162-85210181 None:intergenic 30.0%
TGGAAAAAATATCATTACCC+AGG + chr8_1:85210262-85210281 Msa1221580:CDS 30.0%
TAAACTCATACAGACATATG+TGG + chr8_1:85210345-85210364 Msa1221580:intron 30.0%
! TCACACAATCTTTTAGCAAT+TGG - chr8_1:85210476-85210495 None:intergenic 30.0%
CTTTCATTGCTTCCATTATT+TGG + chr8_1:85210596-85210615 Msa1221580:intron 30.0%
GGAATTGTTCAACCAAATAA+TGG - chr8_1:85210611-85210630 None:intergenic 30.0%
TGCACATCAAAACATTATAG+AGG - chr8_1:85210632-85210651 None:intergenic 30.0%
!! GTTACATATGTAGCATTGAT+AGG - chr8_1:85210868-85210887 None:intergenic 30.0%
TAATCTTTCTTCACAGTAAG+GGG - chr8_1:85211009-85211028 None:intergenic 30.0%
CTTAATCTTTCTTCACAGTA+AGG - chr8_1:85211011-85211030 None:intergenic 30.0%
AAGGGAAGAGTGAAATTACT+TGG - chr8_1:85208380-85208399 None:intergenic 35.0%
AACAAAAGACCTATATGCTC+CGG - chr8_1:85208893-85208912 None:intergenic 35.0%
!!! ATTAACCTCGTTGTTTTAGG+TGG + chr8_1:85209255-85209274 Msa1221580:intron 35.0%
!!! TTAACCTCGTTGTTTTAGGT+GGG + chr8_1:85209256-85209275 Msa1221580:intron 35.0%
AGGATAACAGGATATGGAAA+AGG + chr8_1:85209633-85209652 Msa1221580:intron 35.0%
GGATAACAGGATATGGAAAA+GGG + chr8_1:85209634-85209653 Msa1221580:intron 35.0%
!! ATAGTAAGCACTGACAAAGT+TGG + chr8_1:85209670-85209689 Msa1221580:intron 35.0%
TGACAAAGTTGGAAAATCAG+TGG + chr8_1:85209681-85209700 Msa1221580:intron 35.0%
GACAAAGTTGGAAAATCAGT+GGG + chr8_1:85209682-85209701 Msa1221580:intron 35.0%
TATACAGGTATCTTCAGGAA+AGG + chr8_1:85209969-85209988 Msa1221580:intron 35.0%
AGGAAAGGATGGTTCAAAAA+AGG + chr8_1:85209984-85210003 Msa1221580:CDS 35.0%
TTATAGTAAACTGAGGAGCA+TGG - chr8_1:85210134-85210153 None:intergenic 35.0%
CTCCATTAATTGCCTCAATT+TGG - chr8_1:85210193-85210212 None:intergenic 35.0%
CTAGTTATTGAAGGTCAAAC+TGG + chr8_1:85210242-85210261 Msa1221580:CDS 35.0%
TCATGTAATGTATGGTCCTA+TGG - chr8_1:85210318-85210337 None:intergenic 35.0%
AGGACCATACATTACATGAA+CGG + chr8_1:85210319-85210338 Msa1221580:intron 35.0%
ATCTCCGTTCATGTAATGTA+TGG - chr8_1:85210326-85210345 None:intergenic 35.0%
ATGCAATAATGCCAACATGT+CGG - chr8_1:85210516-85210535 None:intergenic 35.0%
GTAGCGAAAATTGTATGGTT+TGG - chr8_1:85210828-85210847 None:intergenic 35.0%
CCATATCAAGCAACAACAAT+CGG - chr8_1:85210920-85210939 None:intergenic 35.0%
AGCAGAAAAGAAGTTGGGAA+AGG + chr8_1:85208246-85208265 Msa1221580:five_prime_UTR 40.0%
! AATTGAGCGTTGTTGGATAG+AGG - chr8_1:85208316-85208335 None:intergenic 40.0%
GGAAGAGTGAAATTACTTGG+CGG - chr8_1:85208377-85208396 None:intergenic 40.0%
GGATTTACACAACCTTGGTT+AGG + chr8_1:85208614-85208633 Msa1221580:intron 40.0%
AACAGTAGTAGATAGTACGC+AGG + chr8_1:85208665-85208684 Msa1221580:intron 40.0%
TGTGTCTGCATTGGGAATTT+GGG - chr8_1:85208730-85208749 None:intergenic 40.0%
ATGTGTCTGCATTGGGAATT+TGG - chr8_1:85208731-85208750 None:intergenic 40.0%
ATTCCTTGCGATTATCCCTT+GGG - chr8_1:85208754-85208773 None:intergenic 40.0%
TATTCCTTGCGATTATCCCT+TGG - chr8_1:85208755-85208774 None:intergenic 40.0%
GGGATAATCGCAAGGAATAA+TGG + chr8_1:85208756-85208775 Msa1221580:intron 40.0%
ATAACTTAGCCGGAGCATAT+AGG + chr8_1:85208881-85208900 Msa1221580:intron 40.0%
! GTTGGATTTTCTCTGCTTGA+AGG + chr8_1:85209174-85209193 Msa1221580:intron 40.0%
!!! TAACCTCGTTGTTTTAGGTG+GGG + chr8_1:85209257-85209276 Msa1221580:intron 40.0%
!! TGCATACATTGGGATTAGCT+AGG - chr8_1:85209346-85209365 None:intergenic 40.0%
TGACTATAGCATAGGATCAC+AGG - chr8_1:85209551-85209570 None:intergenic 40.0%
ACAAATGTACAGGAGAGAAG+TGG + chr8_1:85209593-85209612 Msa1221580:intron 40.0%
TAGAAGGAAGCAACAAAGCT+GGG - chr8_1:85209863-85209882 None:intergenic 40.0%
! TTCATTCCTCTTCCCTTTTG+CGG + chr8_1:85209907-85209926 Msa1221580:intron 40.0%
TGTAATCATGGTTGATCCTG+TGG + chr8_1:85210008-85210027 Msa1221580:CDS 40.0%
GTAGAAAAGACGCCAAATTG+AGG + chr8_1:85210178-85210197 Msa1221580:intron 40.0%
CGCCAAATTGAGGCAATTAA+TGG + chr8_1:85210188-85210207 Msa1221580:CDS 40.0%
TTGAGGCAATTAATGGAGCT+TGG + chr8_1:85210195-85210214 Msa1221580:CDS 40.0%
TGAGGCAATTAATGGAGCTT+GGG + chr8_1:85210196-85210215 Msa1221580:CDS 40.0%
ATCATTACCCAGGTGAACAT+TGG + chr8_1:85210272-85210291 Msa1221580:intron 40.0%
AGCATTTCCAATGTTCACCT+GGG - chr8_1:85210282-85210301 None:intergenic 40.0%
AAGCATTTCCAATGTTCACC+TGG - chr8_1:85210283-85210302 None:intergenic 40.0%
! GCTTTTGTTCACATGTCCAT+AGG + chr8_1:85210299-85210318 Msa1221580:intron 40.0%
! TATGTGTCCATGCTCCTTTT+CGG - chr8_1:85210726-85210745 None:intergenic 40.0%
!! TGTAGCATTGATAGGCAACA+AGG - chr8_1:85210860-85210879 None:intergenic 40.0%
! CCGATTGTTGTTGCTTGATA+TGG + chr8_1:85210917-85210936 Msa1221580:three_prime_UTR 40.0%
ACCTCGGAAAAACAATGAGT+GGG - chr8_1:85210950-85210969 None:intergenic 40.0%
AACAATAAATGCCACCACCT+CGG - chr8_1:85210966-85210985 None:intergenic 40.0%
GTTGGGAAAGGATAAAGCGA+AGG + chr8_1:85208258-85208277 Msa1221580:five_prime_UTR 45.0%
! TAAAGCGAAGGTGTGAGCAA+TGG + chr8_1:85208270-85208289 Msa1221580:exon 45.0%
! AAAGCGAAGGTGTGAGCAAT+GGG + chr8_1:85208271-85208290 Msa1221580:exon 45.0%
GTTGTTGGATAGAGGAAGAG+TGG - chr8_1:85208308-85208327 None:intergenic 45.0%
TGAAATTACTTGGCGGTGGT+CGG - chr8_1:85208370-85208389 None:intergenic 45.0%
AGAGTGAAATTACTTGGCGG+TGG - chr8_1:85208374-85208393 None:intergenic 45.0%
GTAGTCGCTCATAACTTAGC+CGG + chr8_1:85208871-85208890 Msa1221580:intron 45.0%
TCTGCTTGAAGGAATCAGCA+TGG + chr8_1:85209185-85209204 Msa1221580:intron 45.0%
TGGAGAAGAGAGCAATATGC+TGG + chr8_1:85209281-85209300 Msa1221580:CDS 45.0%
AAGAGAGCAATATGCTGGCA+TGG + chr8_1:85209286-85209305 Msa1221580:CDS 45.0%
TGCTTGACTCTGGGTTCTAT+TGG - chr8_1:85209315-85209334 None:intergenic 45.0%
GACTCGAAATGCTTGACTCT+GGG - chr8_1:85209324-85209343 None:intergenic 45.0%
ATGTACAGGAGAGAAGTGGT+AGG + chr8_1:85209597-85209616 Msa1221580:intron 45.0%
GTAGAAGGAAGCAACAAAGC+TGG - chr8_1:85209864-85209883 None:intergenic 45.0%
AGAAAACCGCAAAAGGGAAG+AGG - chr8_1:85209916-85209935 None:intergenic 45.0%
CAGGTATCTTCAGGAAAGGA+TGG + chr8_1:85209973-85209992 Msa1221580:intron 45.0%
AATGGAGCTTGGGCAATGAT+TGG + chr8_1:85210206-85210225 Msa1221580:CDS 45.0%
!! GGCAATGATTGGTCTAACAG+CGG + chr8_1:85210217-85210236 Msa1221580:CDS 45.0%
!! GCAATGATTGGTCTAACAGC+GGG + chr8_1:85210218-85210237 Msa1221580:CDS 45.0%
ACAGCGGGTCTAGTTATTGA+AGG + chr8_1:85210233-85210252 Msa1221580:CDS 45.0%
CAGATTGGAGAGATAGAGAG+AGG - chr8_1:85210391-85210410 None:intergenic 45.0%
TCGCTTTACTTCATGGCCTT+TGG - chr8_1:85210447-85210466 None:intergenic 45.0%
GATGTGCTCGCTTTACTTCA+TGG - chr8_1:85210454-85210473 None:intergenic 45.0%
TCTCAGCTGCAAGACTACTT+TGG + chr8_1:85210668-85210687 Msa1221580:intron 45.0%
TGTGAAGTAGACAGCCGAAA+AGG + chr8_1:85210709-85210728 Msa1221580:exon 45.0%
!! ACCCACTCATTGTTTTTCCG+AGG + chr8_1:85210946-85210965 Msa1221580:three_prime_UTR 45.0%
CACCTCGGAAAAACAATGAG+TGG - chr8_1:85210951-85210970 None:intergenic 45.0%
!! CACTCATTGTTTTTCCGAGG+TGG + chr8_1:85210949-85210968 Msa1221580:three_prime_UTR 45.0%
!! TCATTGTTTTTCCGAGGTGG+TGG + chr8_1:85210952-85210971 Msa1221580:three_prime_UTR 45.0%
! GGAAGGGAATTGAGCGTTGT+TGG - chr8_1:85208323-85208342 None:intergenic 50.0%
GGTGGGTGTGATGAAAGGAA+GGG - chr8_1:85208339-85208358 None:intergenic 50.0%
! TGGTGGGTGTGATGAAAGGA+AGG - chr8_1:85208340-85208359 None:intergenic 50.0%
!! AGAGTGGTGGGTGTGATGAA+AGG - chr8_1:85208344-85208363 None:intergenic 50.0%
ACTCGTGTATATCCCCGTCT+CGG - chr8_1:85208692-85208711 None:intergenic 50.0%
CCTTGGGATGTGTCTGCATT+GGG - chr8_1:85208738-85208757 None:intergenic 50.0%
CCAATGCAGACACATCCCAA+GGG + chr8_1:85208736-85208755 Msa1221580:intron 50.0%
CATCCCAAGGGATAATCGCA+AGG + chr8_1:85208748-85208767 Msa1221580:intron 50.0%
AATCAGCATGGCAACCTTGC+AGG + chr8_1:85209197-85209216 Msa1221580:intron 50.0%
ATCAGCATGGCAACCTTGCA+GGG + chr8_1:85209198-85209217 Msa1221580:intron 50.0%
CATCCCCACCTAAAACAACG+AGG - chr8_1:85209263-85209282 None:intergenic 50.0%
!!! CTCGTTGTTTTAGGTGGGGA+TGG + chr8_1:85209261-85209280 Msa1221580:intron 50.0%
GGACTCGAAATGCTTGACTC+TGG - chr8_1:85209325-85209344 None:intergenic 50.0%
GATAGAGAGAGGTGACTGCA+GGG - chr8_1:85210380-85210399 None:intergenic 50.0%
AGATAGAGAGAGGTGACTGC+AGG - chr8_1:85210381-85210400 None:intergenic 50.0%
TGTGTGACTGCAGTCAATCC+TGG + chr8_1:85210489-85210508 Msa1221580:intron 50.0%
TCAATCCTGGTCCGACATGT+TGG + chr8_1:85210502-85210521 Msa1221580:intron 50.0%
TAATGCCAACATGTCGGACC+AGG - chr8_1:85210510-85210529 None:intergenic 50.0%
TAGACAGCCGAAAAGGAGCA+TGG + chr8_1:85210716-85210735 Msa1221580:exon 50.0%
GGTGGTCGGAAAAGAGTGGT+GGG - chr8_1:85208356-85208375 None:intergenic 55.0%
GATAGTACGCAGGACCGAGA+CGG + chr8_1:85208675-85208694 Msa1221580:intron 55.0%
ATAGTACGCAGGACCGAGAC+GGG + chr8_1:85208676-85208695 Msa1221580:intron 55.0%
CCCAATGCAGACACATCCCA+AGG + chr8_1:85208735-85208754 Msa1221580:intron 55.0%
CCCTTGGGATGTGTCTGCAT+TGG - chr8_1:85208739-85208758 None:intergenic 55.0%
AACAAGGTCCTTGCCCTGCA+AGG - chr8_1:85209214-85209233 None:intergenic 55.0%
TCCTGTGGAAGCCAAGCGAT+TGG + chr8_1:85210023-85210042 Msa1221580:CDS 55.0%
TTGTTCGGCAGCCAATCGCT+TGG - chr8_1:85210037-85210056 None:intergenic 55.0%
! GCGATTGGCTGCCGAACAAA+TGG + chr8_1:85210038-85210057 Msa1221580:CDS 55.0%
CGGTGGTCGGAAAAGAGTGG+TGG - chr8_1:85208357-85208376 None:intergenic 60.0%
TGGCGGTGGTCGGAAAAGAG+TGG - chr8_1:85208360-85208379 None:intergenic 60.0%
TAGTACGCAGGACCGAGACG+GGG + chr8_1:85208677-85208696 Msa1221580:intron 60.0%
CATGGCAACCTTGCAGGGCA+AGG + chr8_1:85209203-85209222 Msa1221580:intron 60.0%
GCCAATCGCTTGGCTTCCAC+AGG - chr8_1:85210027-85210046 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 85208243 85211045 85208243 ID=Msa1221580;Name=Msa1221580
chr8_1 mRNA 85208243 85211045 85208243 ID=Msa1221580-mRNA-1;Parent=Msa1221580;Name=Msa1221580-mRNA-1;_AED=0.14;_eAED=0.14;_QI=46|1|1|1|0.75|0.6|5|327|145
chr8_1 exon 85208243 85208380 85208243 ID=Msa1221580-mRNA-1:exon:30660;Parent=Msa1221580-mRNA-1
chr8_1 exon 85209274 85209358 85209274 ID=Msa1221580-mRNA-1:exon:30661;Parent=Msa1221580-mRNA-1
chr8_1 exon 85209976 85210089 85209976 ID=Msa1221580-mRNA-1:exon:30662;Parent=Msa1221580-mRNA-1
chr8_1 exon 85210182 85210283 85210182 ID=Msa1221580-mRNA-1:exon:30663;Parent=Msa1221580-mRNA-1
chr8_1 exon 85210674 85211045 85210674 ID=Msa1221580-mRNA-1:exon:30664;Parent=Msa1221580-mRNA-1
chr8_1 five_prime_UTR 85208243 85208288 85208243 ID=Msa1221580-mRNA-1:five_prime_utr;Parent=Msa1221580-mRNA-1
chr8_1 CDS 85208289 85208380 85208289 ID=Msa1221580-mRNA-1:cds;Parent=Msa1221580-mRNA-1
chr8_1 CDS 85209274 85209358 85209274 ID=Msa1221580-mRNA-1:cds;Parent=Msa1221580-mRNA-1
chr8_1 CDS 85209976 85210089 85209976 ID=Msa1221580-mRNA-1:cds;Parent=Msa1221580-mRNA-1
chr8_1 CDS 85210182 85210283 85210182 ID=Msa1221580-mRNA-1:cds;Parent=Msa1221580-mRNA-1
chr8_1 CDS 85210674 85210718 85210674 ID=Msa1221580-mRNA-1:cds;Parent=Msa1221580-mRNA-1
chr8_1 three_prime_UTR 85210719 85211045 85210719 ID=Msa1221580-mRNA-1:three_prime_utr;Parent=Msa1221580-mRNA-1
Gene Sequence

>Msa1221580

ATGGGTTCTTCTTCAACCACTCTTCCTCTATCCAACAACGCTCAATTCCCTTCCTTTCATCACACCCACCACTCTTTTCCGACCACCGCCAAGTGGGGATGGAGAAGAGAGCAATATGCTGGCATGGCTTCCAATAGAACCCAGAGTCAAGCATTTCGAGTCCTAGCTAATCCCAATGTATCTTCAGGAAAGGATGGTTCAAAAAAGGATGTAATCATGGTTGATCCTGTGGAAGCCAAGCGATTGGCTGCCGAACAAATGGAGATAATTAAAGCAAAAGAAAAACTCAAGAAAAGACGCCAAATTGAGGCAATTAATGGAGCTTGGGCAATGATTGGTCTAACAGCGGGTCTAGTTATTGAAGGTCAAACTGGAAAAAATATCATTACCCAGCTGCAAGACTACTTTGGAGCAATTGTTCACTTTTTTGTGAAGTAG

Protein sequence

>Msa1221580

MGSSSTTLPLSNNAQFPSFHHTHHSFPTTAKWGWRREQYAGMASNRTQSQAFRVLANPNVSSGKDGSKKDVIMVDPVEAKRLAAEQMEIIKAKEKLKKRRQIEAINGAWAMIGLTAGLVIEGQTGKNIITQLQDYFGAIVHFFVK*