Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610610 | XP_003607878.1 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 7.34e-124 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610610 | sp|Q93VA3|CYC6_ARATH | 73.485 | 132 | 35 | 0 | 40 | 171 | 44 | 175 | 7.71e-73 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610610 | A2Q293 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 3.51e-124 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017980 | Msa0610610 | 0.809312 | 2.013511e-50 | -8.615850e-47 |
| Msa0024070 | Msa0610610 | 0.834510 | 2.874760e-56 | -8.615850e-47 |
| Msa0025340 | Msa0610610 | 0.822660 | 2.102855e-53 | -8.615850e-47 |
| Msa0028410 | Msa0610610 | 0.819879 | 9.210552e-53 | -8.615850e-47 |
| Msa0028450 | Msa0610610 | 0.802686 | 4.986518e-49 | -8.615850e-47 |
| Msa0030710 | Msa0610610 | 0.815176 | 1.057391e-51 | -8.615850e-47 |
| Msa0044700 | Msa0610610 | 0.805471 | 1.313489e-49 | -8.615850e-47 |
| Msa0045530 | Msa0610610 | 0.806648 | 7.427496e-50 | -8.615850e-47 |
| Msa0046090 | Msa0610610 | 0.810991 | 8.754062e-51 | -8.615850e-47 |
| Msa0052180 | Msa0610610 | 0.807659 | 4.536276e-50 | -8.615850e-47 |
| Msa0058140 | Msa0610610 | 0.802659 | 5.050398e-49 | -8.615850e-47 |
| Msa0067820 | Msa0610610 | 0.826128 | 3.215120e-54 | -8.615850e-47 |
| Msa0093830 | Msa0610610 | 0.825642 | 4.192714e-54 | -8.615850e-47 |
| Msa0097220 | Msa0610610 | 0.814515 | 1.481201e-51 | -8.615850e-47 |
| Msa0097490 | Msa0610610 | 0.821137 | 4.736659e-53 | -8.615850e-47 |
| Msa0097730 | Msa0610610 | 0.801377 | 9.266923e-49 | -8.615850e-47 |
| Msa0102290 | Msa0610610 | 0.826652 | 2.412605e-54 | -8.615850e-47 |
| Msa0113910 | Msa0610610 | 0.808839 | 2.542369e-50 | -8.615850e-47 |
| Msa0610610 | Msa0616570 | 0.811552 | 6.611855e-51 | -8.615850e-47 |
| Msa0610610 | Msa0646710 | 0.800126 | 1.667843e-48 | -8.615850e-47 |
| Msa0610610 | Msa0649140 | 0.825721 | 4.016115e-54 | -8.615850e-47 |
| Msa0610610 | Msa0651250 | 0.929384 | 7.511401e-93 | -8.615850e-47 |
| Msa0610610 | Msa0655980 | 0.811494 | 6.808950e-51 | -8.615850e-47 |
| Msa0610610 | Msa0660160 | 0.803961 | 2.714573e-49 | -8.615850e-47 |
| Msa0610610 | Msa0661490 | 0.804961 | 1.679672e-49 | -8.615850e-47 |
| Msa0610610 | Msa0693250 | 0.992288 | 2.119088e-192 | -8.615850e-47 |
| Msa0610610 | Msa0694810 | 0.814444 | 1.535556e-51 | -8.615850e-47 |
| Msa0610610 | Msa0699900 | 0.813762 | 2.172020e-51 | -8.615850e-47 |
| Msa0610610 | Msa0724120 | 0.800492 | 1.405440e-48 | -8.615850e-47 |
| Msa0610610 | Msa0748470 | 0.814977 | 1.170421e-51 | -8.615850e-47 |
| Msa0610610 | Msa0748890 | 0.801119 | 1.046586e-48 | -8.615850e-47 |
| Msa0610610 | Msa0762900 | 0.801813 | 7.543556e-49 | -8.615850e-47 |
| Msa0610610 | Msa0796840 | 0.802781 | 4.767611e-49 | -8.615850e-47 |
| Msa0610610 | Msa0803220 | 0.803800 | 2.933076e-49 | -8.615850e-47 |
| Msa0610610 | Msa0841570 | 0.809901 | 1.504728e-50 | -8.615850e-47 |
| Msa0610610 | Msa0866650 | 0.802466 | 5.536594e-49 | -8.615850e-47 |
| Msa0610610 | Msa0879820 | 0.814162 | 1.773133e-51 | -8.615850e-47 |
| Msa0610610 | Msa0880200 | 0.821674 | 3.561157e-53 | -8.615850e-47 |
| Msa0610610 | Msa0926090 | 0.801325 | 9.498141e-49 | -8.615850e-47 |
| Msa0610610 | Msa0929440 | 0.804059 | 2.590423e-49 | -8.615850e-47 |
| Msa0610610 | Msa0932040 | 0.806476 | 8.073802e-50 | -8.615850e-47 |
| Msa0610610 | Msa0933320 | 0.801874 | 7.328794e-49 | -8.615850e-47 |
| Msa0610610 | Msa0959970 | 0.827093 | 1.892474e-54 | -8.615850e-47 |
| Msa0610610 | Msa0967940 | 0.813605 | 2.352115e-51 | -8.615850e-47 |
| Msa0610610 | Msa0970120 | 0.816352 | 5.780050e-52 | -8.615850e-47 |
| Msa0610610 | Msa0970160 | 0.811139 | 8.128888e-51 | -8.615850e-47 |
| Msa0610610 | Msa0971100 | 0.801878 | 7.313531e-49 | -8.615850e-47 |
| Msa0610610 | Msa0985570 | 0.833798 | 4.335661e-56 | -8.615850e-47 |
| Msa0610610 | Msa1126980 | 0.827549 | 1.471303e-54 | -8.615850e-47 |
| Msa0610610 | Msa1134840 | 0.811388 | 7.177464e-51 | -8.615850e-47 |
| Msa0610610 | Msa1154130 | 0.807656 | 4.543553e-50 | -8.615850e-47 |
| Msa0610610 | Msa1166020 | 0.810849 | 9.395435e-51 | -8.615850e-47 |
| Msa0610610 | Msa1177300 | 0.813391 | 2.621275e-51 | -8.615850e-47 |
| Msa0610610 | Msa1190670 | 0.824269 | 8.843075e-54 | -8.615850e-47 |
| Msa0610610 | Msa1197210 | 0.836255 | 1.041565e-56 | -8.615850e-47 |
| Msa0610610 | Msa1209390 | 0.815483 | 9.034636e-52 | -8.615850e-47 |
| Msa0610610 | Msa1209650 | 0.806024 | 1.005618e-49 | -8.615850e-47 |
| Msa0610610 | Msa1221580 | 0.807327 | 5.335392e-50 | -8.615850e-47 |
| Msa0610610 | Msa1222020 | 0.816564 | 5.183473e-52 | -8.615850e-47 |
| Msa0610610 | Msa1223050 | 0.816462 | 5.460825e-52 | -8.615850e-47 |
| Msa0610610 | Msa1223520 | 0.813318 | 2.719951e-51 | -8.615850e-47 |
| Msa0610610 | Msa1223600 | 0.810899 | 9.164168e-51 | -8.615850e-47 |
| Msa0610610 | Msa1225280 | 0.802752 | 4.833473e-49 | -8.615850e-47 |
| Msa0610610 | Msa1226330 | 0.809829 | 1.559210e-50 | -8.615850e-47 |
| Msa0610610 | Msa1236090 | 0.828066 | 1.105184e-54 | -8.615850e-47 |
| Msa0610610 | Msa1244940 | 0.820889 | 5.403530e-53 | -8.615850e-47 |
| Msa0610610 | Msa1250490 | 0.800998 | 1.107879e-48 | -8.615850e-47 |
| Msa0610610 | Msa1251830 | 0.814049 | 1.877526e-51 | -8.615850e-47 |
| Msa0610610 | Msa1251890 | 0.807375 | 5.212046e-50 | -8.615850e-47 |
| Msa0610610 | Msa1263460 | 0.807367 | 5.233060e-50 | -8.615850e-47 |
| Msa0610610 | Msa1263600 | 0.811046 | 8.513270e-51 | -8.615850e-47 |
| Msa0610610 | Msa1297550 | 0.809795 | 1.586188e-50 | -8.615850e-47 |
| Msa0610610 | Msa1302750 | 0.813040 | 3.130741e-51 | -8.615850e-47 |
| Msa0610610 | Msa1316090 | 0.801960 | 7.035652e-49 | -8.615850e-47 |
| Msa0610610 | Msa1317090 | 0.810921 | 9.065180e-51 | -8.615850e-47 |
| Msa0610610 | Msa1325260 | 0.831557 | 1.560344e-55 | -8.615850e-47 |
| Msa0610610 | Msa1325270 | 0.810650 | 1.037223e-50 | -8.615850e-47 |
| Msa0610610 | Msa1337950 | 0.802733 | 4.875851e-49 | -8.615850e-47 |
| Msa0610610 | Msa1356500 | 0.811916 | 5.509365e-51 | -8.615850e-47 |
| Msa0610610 | Msa1366400 | 0.810044 | 1.401782e-50 | -8.615850e-47 |
| Msa0610610 | Msa1371690 | 0.808390 | 3.171625e-50 | -8.615850e-47 |
| Msa0610610 | Msa1373340 | 0.807637 | 4.586681e-50 | -8.615850e-47 |
| Msa0610610 | Msa1387650 | 0.804199 | 2.422786e-49 | -8.615850e-47 |
| Msa0610610 | Msa1396310 | 0.816911 | 4.331801e-52 | -8.615850e-47 |
| Msa0610610 | Msa1412750 | 0.800451 | 1.432691e-48 | -8.615850e-47 |
| Msa0610610 | Msa1428050 | 0.801595 | 8.359004e-49 | -8.615850e-47 |
| Msa0610610 | Msa1438380 | 0.806241 | 9.051000e-50 | -8.615850e-47 |
| Msa0610610 | Msa1444750 | 0.833913 | 4.057954e-56 | -8.615850e-47 |
| Msa0610610 | Msa1449320 | 0.801856 | 7.392360e-49 | -8.615850e-47 |
| Msa0610610 | Msa1449510 | 0.811255 | 7.673336e-51 | -8.615850e-47 |
| Msa0610610 | Msa1455000 | 0.812496 | 4.118173e-51 | -8.615850e-47 |
| Msa0610610 | Msa1465950 | 0.800869 | 1.177091e-48 | -8.615850e-47 |
| Msa0124070 | Msa0610610 | 0.820920 | 5.315205e-53 | -8.615850e-47 |
| Msa0127110 | Msa0610610 | 0.801080 | 1.065813e-48 | -8.615850e-47 |
| Msa0128840 | Msa0610610 | 0.803097 | 4.101808e-49 | -8.615850e-47 |
| Msa0131230 | Msa0610610 | 0.807585 | 4.704670e-50 | -8.615850e-47 |
| Msa0141090 | Msa0610610 | 0.802244 | 6.150366e-49 | -8.615850e-47 |
| Msa0147070 | Msa0610610 | 0.836895 | 7.158209e-57 | -8.615850e-47 |
| Msa0170550 | Msa0610610 | 0.820669 | 6.071274e-53 | -8.615850e-47 |
| Msa0181380 | Msa0610610 | 0.819308 | 1.243078e-52 | -8.615850e-47 |
| Msa0186750 | Msa0610610 | 0.813751 | 2.184055e-51 | -8.615850e-47 |
| Msa0234930 | Msa0610610 | 0.802115 | 6.538253e-49 | -8.615850e-47 |
| Msa0370180 | Msa0610610 | 0.821976 | 3.031130e-53 | -8.615850e-47 |
| Msa0371050 | Msa0610610 | 0.828004 | 1.143998e-54 | -8.615850e-47 |
| Msa0374840 | Msa0610610 | 0.801477 | 8.839409e-49 | -8.615850e-47 |
| Msa0375100 | Msa0610610 | 0.807818 | 4.196593e-50 | -8.615850e-47 |
| Msa0376760 | Msa0610610 | 0.812491 | 4.127687e-51 | -8.615850e-47 |
| Msa0380470 | Msa0610610 | 0.810495 | 1.120341e-50 | -8.615850e-47 |
| Msa0383110 | Msa0610610 | 0.801810 | 7.552544e-49 | -8.615850e-47 |
| Msa0384570 | Msa0610610 | 0.829509 | 4.945802e-55 | -8.615850e-47 |
| Msa0439130 | Msa0610610 | 0.811124 | 8.191216e-51 | -8.615850e-47 |
| Msa0471700 | Msa0610610 | 0.811291 | 7.533848e-51 | -8.615850e-47 |
| Msa0475080 | Msa0610610 | 0.815675 | 8.188311e-52 | -8.615850e-47 |
| Msa0482020 | Msa0610610 | 0.811136 | 8.141943e-51 | -8.615850e-47 |
| Msa0266100 | Msa0610610 | 0.820378 | 7.081652e-53 | -8.615850e-47 |
| Msa0269790 | Msa0610610 | 0.832342 | 9.984416e-56 | -8.615850e-47 |
| Msa0273270 | Msa0610610 | 0.802168 | 6.376475e-49 | -8.615850e-47 |
| Msa0284980 | Msa0610610 | 0.826865 | 2.145101e-54 | -8.615850e-47 |
| Msa0285510 | Msa0610610 | 0.813285 | 2.765033e-51 | -8.615850e-47 |
| Msa0288300 | Msa0610610 | 0.813792 | 2.139750e-51 | -8.615850e-47 |
| Msa0288350 | Msa0610610 | 0.801735 | 7.825020e-49 | -8.615850e-47 |
| Msa0288360 | Msa0610610 | 0.805127 | 1.550648e-49 | -8.615850e-47 |
| Msa0305810 | Msa0610610 | 0.809791 | 1.589345e-50 | -8.615850e-47 |
| Msa0307750 | Msa0610610 | 0.805970 | 1.032343e-49 | -8.615850e-47 |
| Msa0341710 | Msa0610610 | 0.814919 | 1.205303e-51 | -8.615850e-47 |
| Msa0485350 | Msa0610610 | 0.805538 | 1.271785e-49 | -8.615850e-47 |
| Msa0500580 | Msa0610610 | 0.802040 | 6.773848e-49 | -8.615850e-47 |
| Msa0506740 | Msa0610610 | 0.810407 | 1.170739e-50 | -8.615850e-47 |
| Msa0521840 | Msa0610610 | 0.807325 | 5.341956e-50 | -8.615850e-47 |
| Msa0522510 | Msa0610610 | 0.816192 | 6.277066e-52 | -8.615850e-47 |
| Msa0524570 | Msa0610610 | 0.808412 | 3.136429e-50 | -8.615850e-47 |
| Msa0527420 | Msa0610610 | 0.813684 | 2.259282e-51 | -8.615850e-47 |
| Msa0562040 | Msa0610610 | 0.809410 | 1.918710e-50 | -8.615850e-47 |
| Msa0565930 | Msa0610610 | 0.806279 | 8.885517e-50 | -8.615850e-47 |
| Msa0574450 | Msa0610610 | 0.812173 | 4.844287e-51 | -8.615850e-47 |
| Msa0578990 | Msa0610610 | 0.995073 | 9.104751e-213 | -8.615850e-47 |
| Msa0581190 | Msa0610610 | 0.806730 | 7.136590e-50 | -8.615850e-47 |
| Msa0581490 | Msa0610610 | 0.807148 | 5.823580e-50 | -8.615850e-47 |
| Msa0583810 | Msa0610610 | 0.823849 | 1.109589e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610610 | MtrunA17_Chr4g0043621 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 6.75e-128 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610610 | AT5G45040.1 | 73.485 | 132 | 35 | 0 | 40 | 171 | 44 | 175 | 7.84e-74 | 219 |
Find 50 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTTGCTTGTCTGATTTC+TGG | 0.156602 | 4_2:+58430493 | Msa0610610:CDS |
| CTCTTTGGATATCTATTGTT+TGG | 0.198050 | 4_2:-58432770 | None:intergenic |
| GGCTGAGTTTGTCAAGTTAC+AGG | 0.238541 | 4_2:+58433480 | Msa0610610:CDS |
| TTGCGGTCCAGAAGAGTTAT+TGG | 0.258091 | 4_2:-58433668 | None:intergenic |
| GTCAAGTTACAGGCTGATAA+AGG | 0.319514 | 4_2:+58433490 | Msa0610610:CDS |
| GAATTATCCAATAACTCTTC+TGG | 0.320875 | 4_2:+58433661 | Msa0610610:three_prime_UTR |
| CAACCTGGAGTGGCGCAAAT+TGG | 0.326523 | 4_2:-58430765 | None:intergenic |
| CCAGGAAACACACTAGGAAT+TGG | 0.330726 | 4_2:-58430378 | None:intergenic |
| TGAACAATGTTGCTCCTCTT+TGG | 0.345483 | 4_2:-58432785 | None:intergenic |
| CCACGAGGGCAGTGCACATT+TGG | 0.345899 | 4_2:+58433424 | Msa0610610:CDS |
| TCTTTGGATATCTATTGTTT+GGG | 0.347185 | 4_2:-58432769 | None:intergenic |
| CCAATTCCTAGTGTGTTTCC+TGG | 0.365226 | 4_2:+58430378 | Msa0610610:five_prime_UTR |
| ATCTACCGTGTCACGTACTA+TGG | 0.365275 | 4_2:+58433204 | Msa0610610:CDS |
| GTGCACATTTGGTGCTCGTT+TGG | 0.375964 | 4_2:+58433435 | Msa0610610:CDS |
| TCAGACAAGCAAGCTTCATT+TGG | 0.389961 | 4_2:-58430486 | None:intergenic |
| CCAACATATGAGGATATTCA+TGG | 0.412785 | 4_2:-58433727 | None:intergenic |
| CAATAATCCTGTCTCCATAA+AGG | 0.416161 | 4_2:+58430519 | Msa0610610:CDS |
| TTGTTCAGCCAAACATGTAT+TGG | 0.417027 | 4_2:+58432801 | Msa0610610:CDS |
| AGATGAAGATATCAAGATAT+TGG | 0.420639 | 4_2:+58433459 | Msa0610610:CDS |
| CGTGACATCCAATACATGTT+TGG | 0.423635 | 4_2:-58432809 | None:intergenic |
| CAGGAAACACACTAGGAATT+GGG | 0.443776 | 4_2:-58430377 | None:intergenic |
| ATTACAGGATAACGTGAAAC+GGG | 0.448174 | 4_2:+58430641 | Msa0610610:intron |
| TATAGTTCTACGCAGGGGTT+TGG | 0.449832 | 4_2:+58433388 | Msa0610610:intron |
| TCAAGTTACAGGCTGATAAA+GGG | 0.462996 | 4_2:+58433491 | Msa0610610:CDS |
| TCTCCAATTTGCGCCACTCC+AGG | 0.479406 | 4_2:+58430762 | Msa0610610:CDS |
| GATTACAGGATAACGTGAAA+CGG | 0.480757 | 4_2:+58430640 | Msa0610610:intron |
| ACCAATCCATAATGAAAAGA+TGG | 0.486136 | 4_2:-58433566 | None:intergenic |
| AAAACTTATGGCAGGTAACA+TGG | 0.498173 | 4_2:+58430340 | None:intergenic |
| GCGTGCGTATCTCAGATAGA+TGG | 0.511591 | 4_2:-58430436 | None:intergenic |
| AGTATAATGCACTTGTTACC+AGG | 0.530229 | 4_2:-58430396 | None:intergenic |
| TTATGGCAGGTAACATGGAA+TGG | 0.531680 | 4_2:+58430345 | None:intergenic |
| AGAAAGGCAGCCGCAAGAGG+AGG | 0.570107 | 4_2:-58430732 | None:intergenic |
| CCAAATGTGCACTGCCCTCG+TGG | 0.576137 | 4_2:-58433424 | None:intergenic |
| CAACTTGGCTCCTCCTCTTG+CGG | 0.582072 | 4_2:+58430722 | Msa0610610:CDS |
| AGCAGAAAGGCAGCCGCAAG+AGG | 0.590194 | 4_2:-58430735 | None:intergenic |
| TGTATTGGATGTCACGATGC+AGG | 0.593033 | 4_2:+58432816 | Msa0610610:CDS |
| AAGAGGTAACCAACCTGGAG+TGG | 0.599652 | 4_2:-58430775 | None:intergenic |
| CGTGTCACGTACTATGGCAA+AGG | 0.616930 | 4_2:+58433210 | Msa0610610:CDS |
| CAAACAATAGATATCCAAAG+AGG | 0.625176 | 4_2:+58432771 | Msa0610610:CDS |
| CTATGGCAAAGGAAGAATGC+CGG | 0.626553 | 4_2:+58433221 | Msa0610610:CDS |
| AATTGGAGAAAATAGCAGAA+AGG | 0.628466 | 4_2:-58430748 | None:intergenic |
| CTTTGCCATAGTACGTGACA+CGG | 0.648192 | 4_2:-58433209 | None:intergenic |
| TTGTTACCAGGAAACACACT+AGG | 0.649741 | 4_2:-58430384 | None:intergenic |
| TATTCACAAAGGATTTACAA+AGG | 0.666724 | 4_2:+58432973 | Msa0610610:CDS |
| GGTAAAGAGTGCATGCCACG+AGG | 0.676403 | 4_2:+58433409 | Msa0610610:CDS |
| ATCGTCTATATAATTAATTG+CGG | 0.680726 | 4_2:-58433685 | None:intergenic |
| GTAAAGAGTGCATGCCACGA+GGG | 0.681699 | 4_2:+58433410 | Msa0610610:CDS |
| AGTTACAGGCTGATAAAGGG+TGG | 0.682583 | 4_2:+58433494 | Msa0610610:CDS |
| GGGGTCAACTCTATTCACAA+AGG | 0.702168 | 4_2:+58432962 | Msa0610610:intron |
| ATTGGATGTCACGATGCAGG+TGG | 0.703936 | 4_2:+58432819 | Msa0610610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAATATTATATTGTG+AGG | - | chr4_2:58430613-58430632 | None:intergenic | 10.0% |
| !! | TATTTATCAAAAAAACATAT+TGG | + | chr4_2:58432495-58432514 | Msa0610610:intron | 10.0% |
| !!! | TTATATTTTTGTATATGTTT+TGG | + | chr4_2:58433626-58433645 | Msa0610610:three_prime_UTR | 10.0% |
| !!! | TATATTTTTGTATATGTTTT+GGG | + | chr4_2:58433627-58433646 | Msa0610610:three_prime_UTR | 10.0% |
| !!! | AGTTTAGTATTTTAAAAAAG+AGG | - | chr4_2:58430795-58430814 | None:intergenic | 15.0% |
| !! | CATTTCTAAATTAAATTGAA+GGG | - | chr4_2:58431417-58431436 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTCTACAATA+AGG | - | chr4_2:58432142-58432161 | None:intergenic | 15.0% |
| !! | ACATAACAATTAATATACTA+AGG | - | chr4_2:58432176-58432195 | None:intergenic | 15.0% |
| !! | TAATTAAGACATTTGATTAC+AGG | + | chr4_2:58430626-58430645 | Msa0610610:intron | 20.0% |
| !! | TCTATATAGAGAAAATTGAA+TGG | + | chr4_2:58431011-58431030 | Msa0610610:intron | 20.0% |
| !! | CTATATAGAGAAAATTGAAT+GGG | + | chr4_2:58431012-58431031 | Msa0610610:intron | 20.0% |
| !!! | TTTTTTTAAAACTCAGTATC+CGG | - | chr4_2:58431090-58431109 | None:intergenic | 20.0% |
| !!! | AGAAAAAAGCTTTGATTTAA+TGG | - | chr4_2:58431147-58431166 | None:intergenic | 20.0% |
| !! | CCATTTCTAAATTAAATTGA+AGG | - | chr4_2:58431418-58431437 | None:intergenic | 20.0% |
| !!! | CCTTCAATTTAATTTAGAAA+TGG | + | chr4_2:58431415-58431434 | Msa0610610:intron | 20.0% |
| !! | ACTTTGCATAAATTTCAATA+TGG | - | chr4_2:58431889-58431908 | None:intergenic | 20.0% |
| !! | ATATTGAAATTTATGCAAAG+TGG | + | chr4_2:58431888-58431907 | Msa0610610:intron | 20.0% |
| !!! | AAAGCACTAAATTTATCAAA+AGG | + | chr4_2:58433002-58433021 | Msa0610610:intron | 20.0% |
| !! | AAGCACTAAATTTATCAAAA+GGG | + | chr4_2:58433003-58433022 | Msa0610610:intron | 20.0% |
| !! | TATTCATATAAAAATTGCTC+TGG | + | chr4_2:58433086-58433105 | Msa0610610:intron | 20.0% |
| !! | TAAATGTTGTTCTATAGAAA+TGG | + | chr4_2:58433162-58433181 | Msa0610610:intron | 20.0% |
| !! | ATCGTCTATATAATTAATTG+CGG | - | chr4_2:58433688-58433707 | None:intergenic | 20.0% |
| ! | ACAAAACAAATAAGAGTGAA+TGG | - | chr4_2:58430857-58430876 | None:intergenic | 25.0% |
| !! | AGCATATTTTACTGTTTTAC+TGG | - | chr4_2:58431188-58431207 | None:intergenic | 25.0% |
| ! | TTCTAAATTAAATTGAAGGG+AGG | - | chr4_2:58431414-58431433 | None:intergenic | 25.0% |
| ! | AATGACTCGTTGAAAATTAA+AGG | + | chr4_2:58431459-58431478 | Msa0610610:intron | 25.0% |
| !! | AAACAATCATTTGTGTTTTG+AGG | + | chr4_2:58431549-58431568 | Msa0610610:intron | 25.0% |
| !!! | AACAATCATTTGTGTTTTGA+GGG | + | chr4_2:58431550-58431569 | Msa0610610:intron | 25.0% |
| !!! | TGAAGTTAGTTTTTTAGTCT+TGG | + | chr4_2:58431629-58431648 | Msa0610610:intron | 25.0% |
| !!! | ACAAATCAACTAGTTTTTTC+AGG | + | chr4_2:58431761-58431780 | Msa0610610:intron | 25.0% |
| ! | ATCAATGTTAAGATTGAAAG+AGG | - | chr4_2:58431920-58431939 | None:intergenic | 25.0% |
| ! | TCTTTCAATCTTAACATTGA+TGG | + | chr4_2:58431919-58431938 | Msa0610610:intron | 25.0% |
| !!! | TTTATTTTTCCTCTTGAACT+GGG | - | chr4_2:58432526-58432545 | None:intergenic | 25.0% |
| !!! | ATTTATTTTTCCTCTTGAAC+TGG | - | chr4_2:58432527-58432546 | None:intergenic | 25.0% |
| ! | TCTTTGGATATCTATTGTTT+GGG | - | chr4_2:58432772-58432791 | None:intergenic | 25.0% |
| !!! | ATATATCTAGCTTTATGTTC+TGG | + | chr4_2:58432882-58432901 | Msa0610610:intron | 25.0% |
| ! | AAGGAGAAAAAAAAAGGAAA+GGG | - | chr4_2:58432939-58432958 | None:intergenic | 25.0% |
| ! | TATTCACAAAGGATTTACAA+AGG | + | chr4_2:58432973-58432992 | Msa0610610:CDS | 25.0% |
| ! | AGCACTAAATTTATCAAAAG+GGG | + | chr4_2:58433004-58433023 | Msa0610610:intron | 25.0% |
| !!! | CATTGATTAGCTTTCATTTT+AGG | - | chr4_2:58433112-58433131 | None:intergenic | 25.0% |
| ! | AGATGAAGATATCAAGATAT+TGG | + | chr4_2:58433459-58433478 | Msa0610610:CDS | 25.0% |
| !!! | GTTGCTAAATCATTTTTGTT+CGG | - | chr4_2:58433533-58433552 | None:intergenic | 25.0% |
| ! | AGCAATGTCTTTTACCTTTA+TGG | - | chr4_2:58430536-58430555 | None:intergenic | 30.0% |
| AATATTATATTGTGAGGCTG+AGG | - | chr4_2:58430607-58430626 | None:intergenic | 30.0% | |
| !! | AGTCAAGTTTTTCAACAACT+TGG | + | chr4_2:58430707-58430726 | Msa0610610:CDS | 30.0% |
| AATTGGAGAAAATAGCAGAA+AGG | - | chr4_2:58430751-58430770 | None:intergenic | 30.0% | |
| AGCAATTTGAACAAAAAAGC+GGG | - | chr4_2:58430820-58430839 | None:intergenic | 30.0% | |
| GAGCAATTTGAACAAAAAAG+CGG | - | chr4_2:58430821-58430840 | None:intergenic | 30.0% | |
| TTGTACAAACTAGAAAGTAG+TGG | + | chr4_2:58430903-58430922 | Msa0610610:intron | 30.0% | |
| AAACTGTAAAGAACCATCTT+AGG | + | chr4_2:58431299-58431318 | Msa0610610:intron | 30.0% | |
| GTTAAATCACAAACCTAAGA+TGG | - | chr4_2:58431315-58431334 | None:intergenic | 30.0% | |
| TAATGTTCAAAGATCCTACA+TGG | - | chr4_2:58431337-58431356 | None:intergenic | 30.0% | |
| !! | TGAAAATTAAAGGAGCATTG+TGG | + | chr4_2:58431469-58431488 | Msa0610610:intron | 30.0% |
| TGGACATACATTAGGAATTT+AGG | - | chr4_2:58431510-58431529 | None:intergenic | 30.0% | |
| AAACATCTTGGACATACATT+AGG | - | chr4_2:58431518-58431537 | None:intergenic | 30.0% | |
| GTGGGAGAAATTTATAAGTA+TGG | + | chr4_2:58431595-58431614 | Msa0610610:intron | 30.0% | |
| AACTTAAAAACTCCCAAAGT+TGG | + | chr4_2:58431674-58431693 | Msa0610610:intron | 30.0% | |
| TAAAGATGCCAAAAATTGTC+AGG | - | chr4_2:58431800-58431819 | None:intergenic | 30.0% | |
| ! | TTGTTTTCACTATAAAGCAG+GGG | - | chr4_2:58431866-58431885 | None:intergenic | 30.0% |
| !! | GTTGTTTTCACTATAAAGCA+GGG | - | chr4_2:58431867-58431886 | None:intergenic | 30.0% |
| AATGTTAAGATTGAAAGAGG+TGG | - | chr4_2:58431917-58431936 | None:intergenic | 30.0% | |
| ! | ATATAGAAGTTGATTGACCA+AGG | - | chr4_2:58432032-58432051 | None:intergenic | 30.0% |
| TGGTCAATCAACTTCTATAT+TGG | + | chr4_2:58432032-58432051 | Msa0610610:intron | 30.0% | |
| !!! | TTAGTATTTTTTCCTTCACC+AGG | + | chr4_2:58432195-58432214 | Msa0610610:intron | 30.0% |
| ! | GATGTTTGAGATGTAAACTA+AGG | - | chr4_2:58432261-58432280 | None:intergenic | 30.0% |
| ACATCTCAAACATCTTCTTA+CGG | + | chr4_2:58432267-58432286 | Msa0610610:intron | 30.0% | |
| CTTACGATACATATGGTTAT+TGG | - | chr4_2:58432332-58432351 | None:intergenic | 30.0% | |
| CAATAACCATATGTATCGTA+AGG | + | chr4_2:58432330-58432349 | Msa0610610:intron | 30.0% | |
| AAAATGAGTTTCAGCTAAGA+GGG | - | chr4_2:58432430-58432449 | None:intergenic | 30.0% | |
| TAAAATGAGTTTCAGCTAAG+AGG | - | chr4_2:58432431-58432450 | None:intergenic | 30.0% | |
| ! | TTACATGCTCATTGACTATT+TGG | - | chr4_2:58432560-58432579 | None:intergenic | 30.0% |
| AAATAGTCAATGAGCATGTA+AGG | + | chr4_2:58432559-58432578 | Msa0610610:intron | 30.0% | |
| ATTAATCAGAATCCTGAGTA+TGG | - | chr4_2:58432612-58432631 | None:intergenic | 30.0% | |
| TATAACAACTTCAAGTCGAT+TGG | - | chr4_2:58432691-58432710 | None:intergenic | 30.0% | |
| CTCTTTGGATATCTATTGTT+TGG | - | chr4_2:58432773-58432792 | None:intergenic | 30.0% | |
| CAAACAATAGATATCCAAAG+AGG | + | chr4_2:58432771-58432790 | Msa0610610:CDS | 30.0% | |
| CAAGGAGAAAAAAAAAGGAA+AGG | - | chr4_2:58432940-58432959 | None:intergenic | 30.0% | |
| ! | TCTTTTCGAATTTGTGTAGA+CGG | + | chr4_2:58433051-58433070 | Msa0610610:intron | 30.0% |
| AGGATAATCATTAAAGCAGA+AGG | - | chr4_2:58433285-58433304 | None:intergenic | 30.0% | |
| ! | TCTCTTCCATCTTTTCATTA+TGG | + | chr4_2:58433560-58433579 | Msa0610610:three_prime_UTR | 30.0% |
| ! | TCCATCTTTTCATTATGGAT+TGG | + | chr4_2:58433565-58433584 | Msa0610610:three_prime_UTR | 30.0% |
| ACCAATCCATAATGAAAAGA+TGG | - | chr4_2:58433569-58433588 | None:intergenic | 30.0% | |
| !!! | TATGTTTTGGGTTGAGATAA+TGG | + | chr4_2:58433639-58433658 | Msa0610610:three_prime_UTR | 30.0% |
| GAATTATCCAATAACTCTTC+TGG | + | chr4_2:58433661-58433680 | Msa0610610:three_prime_UTR | 30.0% | |
| ! | AGTATAATGCACTTGTTACC+AGG | - | chr4_2:58430399-58430418 | None:intergenic | 35.0% |
| CAATAATCCTGTCTCCATAA+AGG | + | chr4_2:58430519-58430538 | Msa0610610:CDS | 35.0% | |
| ! | TCTTTTACCTTTATGGAGAC+AGG | - | chr4_2:58430529-58430548 | None:intergenic | 35.0% |
| GATTACAGGATAACGTGAAA+CGG | + | chr4_2:58430640-58430659 | Msa0610610:intron | 35.0% | |
| ATTACAGGATAACGTGAAAC+GGG | + | chr4_2:58430641-58430660 | Msa0610610:intron | 35.0% | |
| TAAAAAAGAGGTAACCAACC+TGG | - | chr4_2:58430783-58430802 | None:intergenic | 35.0% | |
| GCAATTTGAACAAAAAAGCG+GGG | - | chr4_2:58430819-58430838 | None:intergenic | 35.0% | |
| AAATAAGAGTGAATGGCATG+GGG | - | chr4_2:58430850-58430869 | None:intergenic | 35.0% | |
| CAAATAAGAGTGAATGGCAT+GGG | - | chr4_2:58430851-58430870 | None:intergenic | 35.0% | |
| ACAAATAAGAGTGAATGGCA+TGG | - | chr4_2:58430852-58430871 | None:intergenic | 35.0% | |
| AGCCCAACTAATTTGGTATT+GGG | - | chr4_2:58430989-58431008 | None:intergenic | 35.0% | |
| TAGCCCAACTAATTTGGTAT+TGG | - | chr4_2:58430990-58431009 | None:intergenic | 35.0% | |
| ! | ATAGACTAGCCCAACTAATT+TGG | - | chr4_2:58430996-58431015 | None:intergenic | 35.0% |
| GTGTAACTCAAAGTAATGCA+AGG | + | chr4_2:58431267-58431286 | Msa0610610:intron | 35.0% | |
| GGTTTGTGATTTAACCATGT+AGG | + | chr4_2:58431320-58431339 | Msa0610610:intron | 35.0% | |
| ATTAAATTGAAGGGAGGACA+AGG | - | chr4_2:58431408-58431427 | None:intergenic | 35.0% | |
| TCCAAGATGTTTGTAAGTTC+AGG | + | chr4_2:58431526-58431545 | Msa0610610:intron | 35.0% | |
| TCCTGAACTTACAAACATCT+TGG | - | chr4_2:58431530-58431549 | None:intergenic | 35.0% | |
| TAACGTGACTATGGATTTGT+GGG | + | chr4_2:58431577-58431596 | Msa0610610:intron | 35.0% | |
| !! | TTAGTCTTGGTCTGTTTCAA+TGG | + | chr4_2:58431642-58431661 | Msa0610610:intron | 35.0% |
| ! | AAAAACTCCCAAAGTTGGTT+CGG | + | chr4_2:58431679-58431698 | Msa0610610:intron | 35.0% |
| GTCATGATACCAAATACCAT+TGG | - | chr4_2:58431724-58431743 | None:intergenic | 35.0% | |
| CCAAAAATTGTCAGGATCAA+AGG | - | chr4_2:58431792-58431811 | None:intergenic | 35.0% | |
| ! | CCTTTGATCCTGACAATTTT+TGG | + | chr4_2:58431789-58431808 | Msa0610610:intron | 35.0% |
| ! | TGTTTTCACTATAAAGCAGG+GGG | - | chr4_2:58431865-58431884 | None:intergenic | 35.0% |
| !! | GGTTGTTTTCACTATAAAGC+AGG | - | chr4_2:58431868-58431887 | None:intergenic | 35.0% |
| GGTTCTCATTACAGTGTTAA+TGG | + | chr4_2:58431940-58431959 | Msa0610610:intron | 35.0% | |
| TCCCTGCAATCTATTTATGT+GGG | + | chr4_2:58432108-58432127 | Msa0610610:intron | 35.0% | |
| ACCCACATAAATAGATTGCA+GGG | - | chr4_2:58432112-58432131 | None:intergenic | 35.0% | |
| GAACTAAACAAGGAAATTCC+TGG | - | chr4_2:58432216-58432235 | None:intergenic | 35.0% | |
| TTGACTGTGTGAACTAAACA+AGG | - | chr4_2:58432226-58432245 | None:intergenic | 35.0% | |
| TGAAGATATCATCATACCCA+AGG | - | chr4_2:58432384-58432403 | None:intergenic | 35.0% | |
| TGGGTATGATGATATCTTCA+AGG | + | chr4_2:58432384-58432403 | Msa0610610:intron | 35.0% | |
| GCAAGTAGCAAGTGATAAAT+AGG | + | chr4_2:58432633-58432652 | Msa0610610:intron | 35.0% | |
| TTGTTCAGCCAAACATGTAT+TGG | + | chr4_2:58432801-58432820 | Msa0610610:CDS | 35.0% | |
| CTAGATATATCATGCCAAAG+GGG | - | chr4_2:58432872-58432891 | None:intergenic | 35.0% | |
| GCTAGATATATCATGCCAAA+GGG | - | chr4_2:58432873-58432892 | None:intergenic | 35.0% | |
| AGCTAGATATATCATGCCAA+AGG | - | chr4_2:58432874-58432893 | None:intergenic | 35.0% | |
| !!! | TCCTTTTTTTTTCTCCTTGC+AGG | + | chr4_2:58432941-58432960 | Msa0610610:intron | 35.0% |
| !!! | CCTTTTTTTTTCTCCTTGCA+GGG | + | chr4_2:58432942-58432961 | Msa0610610:intron | 35.0% |
| !!! | CTTTTTTTTTCTCCTTGCAG+GGG | + | chr4_2:58432943-58432962 | Msa0610610:intron | 35.0% |
| GTCTAAGTAAGACATCTTAC+CGG | - | chr4_2:58433243-58433262 | None:intergenic | 35.0% | |
| CTTACTTAGACTTCAGACAT+AGG | + | chr4_2:58433252-58433271 | Msa0610610:intron | 35.0% | |
| CCATAAGGCATAAACTATGA+AGG | - | chr4_2:58433305-58433324 | None:intergenic | 35.0% | |
| CCTTCATAGTTTATGCCTTA+TGG | + | chr4_2:58433302-58433321 | Msa0610610:intron | 35.0% | |
| TCAAGTTACAGGCTGATAAA+GGG | + | chr4_2:58433491-58433510 | Msa0610610:CDS | 35.0% | |
| ! | TTTTGTTCGGTTTCAATGCT+TGG | - | chr4_2:58433520-58433539 | None:intergenic | 35.0% |
| CAGGAAACACACTAGGAATT+GGG | - | chr4_2:58430380-58430399 | None:intergenic | 40.0% | |
| TTGTTACCAGGAAACACACT+AGG | - | chr4_2:58430387-58430406 | None:intergenic | 40.0% | |
| TCAGACAAGCAAGCTTCATT+TGG | - | chr4_2:58430489-58430508 | None:intergenic | 40.0% | |
| ! | AAGCTTGCTTGTCTGATTTC+TGG | + | chr4_2:58430493-58430512 | Msa0610610:CDS | 40.0% |
| ! | CTAGAGAGGTGCATAATTCA+AGG | - | chr4_2:58430949-58430968 | None:intergenic | 40.0% |
| CTTGAATTATGCACCTCTCT+AGG | + | chr4_2:58430947-58430966 | Msa0610610:intron | 40.0% | |
| TCCCCCAATACCAAATTAGT+TGG | + | chr4_2:58430983-58431002 | Msa0610610:intron | 40.0% | |
| ! | CCCAACTAATTTGGTATTGG+GGG | - | chr4_2:58430987-58431006 | None:intergenic | 40.0% |
| CCCCCAATACCAAATTAGTT+GGG | + | chr4_2:58430984-58431003 | Msa0610610:intron | 40.0% | |
| GCCCAACTAATTTGGTATTG+GGG | - | chr4_2:58430988-58431007 | None:intergenic | 40.0% | |
| TAAGGACTGACTAATCCGAA+GGG | - | chr4_2:58431066-58431085 | None:intergenic | 40.0% | |
| TAAAACTCAGTATCCGGCTA+AGG | - | chr4_2:58431084-58431103 | None:intergenic | 40.0% | |
| TTCAACGAGTCATTTGCCAA+GGG | - | chr4_2:58431453-58431472 | None:intergenic | 40.0% | |
| TTTCAACGAGTCATTTGCCA+AGG | - | chr4_2:58431454-58431473 | None:intergenic | 40.0% | |
| GTAACGTGACTATGGATTTG+TGG | + | chr4_2:58431576-58431595 | Msa0610610:intron | 40.0% | |
| ! | GCTTTTGCAACAGATGTTGA+TGG | - | chr4_2:58431843-58431862 | None:intergenic | 40.0% |
| !!! | AATGGCCTTTTAGCTTGTAG+AGG | + | chr4_2:58431958-58431977 | Msa0610610:intron | 40.0% |
| TAAGGCCTCTACAAGCTAAA+AGG | - | chr4_2:58431966-58431985 | None:intergenic | 40.0% | |
| !! | ACGAACAAGACTTTAAGGCT+CGG | - | chr4_2:58432058-58432077 | None:intergenic | 40.0% |
| AAGCCACGAACAAGACTTTA+AGG | - | chr4_2:58432063-58432082 | None:intergenic | 40.0% | |
| AGATTGCAGGGACAAATACT+TGG | - | chr4_2:58432100-58432119 | None:intergenic | 40.0% | |
| GTCCCTGCAATCTATTTATG+TGG | + | chr4_2:58432107-58432126 | Msa0610610:intron | 40.0% | |
| GACCCACATAAATAGATTGC+AGG | - | chr4_2:58432113-58432132 | None:intergenic | 40.0% | |
| AACAAGGAAATTCCTGGTGA+AGG | - | chr4_2:58432210-58432229 | None:intergenic | 40.0% | |
| CTCTCAATCAATCAGCATCA+GGG | - | chr4_2:58432296-58432315 | None:intergenic | 40.0% | |
| TCTCTCAATCAATCAGCATC+AGG | - | chr4_2:58432297-58432316 | None:intergenic | 40.0% | |
| ! | TGCTGATTGATTGAGAGAGA+CGG | + | chr4_2:58432299-58432318 | Msa0610610:intron | 40.0% |
| TGTTCGCCTTACGATACATA+TGG | - | chr4_2:58432339-58432358 | None:intergenic | 40.0% | |
| CTGATGAGTTAGCAAACCTT+GGG | + | chr4_2:58432365-58432384 | Msa0610610:intron | 40.0% | |
| ATAGCTAACTAGCTAAGCGA+GGG | - | chr4_2:58432460-58432479 | None:intergenic | 40.0% | |
| AATAGCTAACTAGCTAAGCG+AGG | - | chr4_2:58432461-58432480 | None:intergenic | 40.0% | |
| TTGGAAAATCCCAGTTCAAG+AGG | + | chr4_2:58432514-58432533 | Msa0610610:intron | 40.0% | |
| TAGACAAGATCTCCATACTC+AGG | + | chr4_2:58432597-58432616 | Msa0610610:intron | 40.0% | |
| TGAACAATGTTGCTCCTCTT+TGG | - | chr4_2:58432788-58432807 | None:intergenic | 40.0% | |
| CGTGACATCCAATACATGTT+TGG | - | chr4_2:58432812-58432831 | None:intergenic | 40.0% | |
| CCCTGCAAGGAGAAAAAAAA+AGG | - | chr4_2:58432945-58432964 | None:intergenic | 40.0% | |
| CCTAAGCTTAGCTAACCATA+AGG | - | chr4_2:58433320-58433339 | None:intergenic | 40.0% | |
| ! | CCTTATGGTTAGCTAAGCTT+AGG | + | chr4_2:58433317-58433336 | Msa0610610:intron | 40.0% |
| ! | AGTCATGTATAGTTCTACGC+AGG | + | chr4_2:58433381-58433400 | Msa0610610:intron | 40.0% |
| ! | GTCATGTATAGTTCTACGCA+GGG | + | chr4_2:58433382-58433401 | Msa0610610:intron | 40.0% |
| ! | TCATGTATAGTTCTACGCAG+GGG | + | chr4_2:58433383-58433402 | Msa0610610:intron | 40.0% |
| GTCAAGTTACAGGCTGATAA+AGG | + | chr4_2:58433490-58433509 | Msa0610610:CDS | 40.0% | |
| CCAGGAAACACACTAGGAAT+TGG | - | chr4_2:58430381-58430400 | None:intergenic | 45.0% | |
| CCAATTCCTAGTGTGTTTCC+TGG | + | chr4_2:58430378-58430397 | Msa0610610:five_prime_UTR | 45.0% | |
| GGTGCATAATTCAAGGTCAC+AGG | - | chr4_2:58430942-58430961 | None:intergenic | 45.0% | |
| ATGAAACCTCAGACCTAGAG+AGG | - | chr4_2:58430963-58430982 | None:intergenic | 45.0% | |
| CTAAGGACTGACTAATCCGA+AGG | - | chr4_2:58431067-58431086 | None:intergenic | 45.0% | |
| GTCATTTGCCAAGGGAGTTT+GGG | - | chr4_2:58431445-58431464 | None:intergenic | 45.0% | |
| AGTCATTTGCCAAGGGAGTT+TGG | - | chr4_2:58431446-58431465 | None:intergenic | 45.0% | |
| GAGGGATTGTAACGTGACTA+TGG | + | chr4_2:58431568-58431587 | Msa0610610:intron | 45.0% | |
| ATCCGATCCGAACCAACTTT+GGG | - | chr4_2:58431689-58431708 | None:intergenic | 45.0% | |
| !! | TGGCATTGGCCAATGGTATT+TGG | + | chr4_2:58431712-58431731 | Msa0610610:intron | 45.0% |
| ! | TTTACACAGCCAGCTTGCTT+TGG | + | chr4_2:58431816-58431835 | Msa0610610:intron | 45.0% |
| ! | TTACCAAGGATTCTGAGGGT+CGG | + | chr4_2:58431983-58432002 | Msa0610610:intron | 45.0% |
| ! | TCTGAGGGTCGGTTTATTTG+TGG | + | chr4_2:58431994-58432013 | Msa0610610:intron | 45.0% |
| TGTGGCTTCGTTTGTATCCT+TGG | + | chr4_2:58432012-58432031 | Msa0610610:intron | 45.0% | |
| !! | GAGCCTTAAAGTCTTGTTCG+TGG | + | chr4_2:58432057-58432076 | Msa0610610:intron | 45.0% |
| CAGGGACAAATACTTGGTTC+TGG | - | chr4_2:58432094-58432113 | None:intergenic | 45.0% | |
| GCTGATGAGTTAGCAAACCT+TGG | + | chr4_2:58432364-58432383 | Msa0610610:intron | 45.0% | |
| TGTATTGGATGTCACGATGC+AGG | + | chr4_2:58432816-58432835 | Msa0610610:CDS | 45.0% | |
| GGGGTCAACTCTATTCACAA+AGG | + | chr4_2:58432962-58432981 | Msa0610610:intron | 45.0% | |
| ATCTACCGTGTCACGTACTA+TGG | + | chr4_2:58433204-58433223 | Msa0610610:CDS | 45.0% | |
| CTTTGCCATAGTACGTGACA+CGG | - | chr4_2:58433212-58433231 | None:intergenic | 45.0% | |
| CTATGGCAAAGGAAGAATGC+CGG | + | chr4_2:58433221-58433240 | Msa0610610:CDS | 45.0% | |
| ! | TATAGTTCTACGCAGGGGTT+TGG | + | chr4_2:58433388-58433407 | Msa0610610:intron | 45.0% |
| GGCTGAGTTTGTCAAGTTAC+AGG | + | chr4_2:58433480-58433499 | Msa0610610:CDS | 45.0% | |
| AGTTACAGGCTGATAAAGGG+TGG | + | chr4_2:58433494-58433513 | Msa0610610:CDS | 45.0% | |
| TTGCGGTCCAGAAGAGTTAT+TGG | - | chr4_2:58433671-58433690 | None:intergenic | 45.0% | |
| GCGTGCGTATCTCAGATAGA+TGG | - | chr4_2:58430439-58430458 | None:intergenic | 50.0% | |
| AAGAGGTAACCAACCTGGAG+TGG | - | chr4_2:58430778-58430797 | None:intergenic | 50.0% | |
| TATGCACCTCTCTAGGTCTG+AGG | + | chr4_2:58430954-58430973 | Msa0610610:intron | 50.0% | |
| !! | CGGATTAGTCAGTCCTTAGC+CGG | + | chr4_2:58431068-58431087 | Msa0610610:intron | 50.0% |
| TCTCATTGTGCTGCACAGAC+TGG | - | chr4_2:58431371-58431390 | None:intergenic | 50.0% | |
| ATGGTAAGCCCAAACTCCCT+TGG | + | chr4_2:58431434-58431453 | Msa0610610:intron | 50.0% | |
| !! | CTCCCAAAGTTGGTTCGGAT+CGG | + | chr4_2:58431684-58431703 | Msa0610610:intron | 50.0% |
| GATCCGATCCGAACCAACTT+TGG | - | chr4_2:58431690-58431709 | None:intergenic | 50.0% | |
| ! | GTTGATGGACCAAAGCAAGC+TGG | - | chr4_2:58431828-58431847 | None:intergenic | 50.0% |
| AGCTTGTAGAGGCCTTACCA+AGG | + | chr4_2:58431969-58431988 | Msa0610610:intron | 50.0% | |
| AGGCCTTACCAAGGATTCTG+AGG | + | chr4_2:58431978-58431997 | Msa0610610:intron | 50.0% | |
| GGCCTTACCAAGGATTCTGA+GGG | + | chr4_2:58431979-58431998 | Msa0610610:intron | 50.0% | |
| GACCCTCAGAATCCTTGGTA+AGG | - | chr4_2:58431984-58432003 | None:intergenic | 50.0% | |
| AAACCGACCCTCAGAATCCT+TGG | - | chr4_2:58431989-58432008 | None:intergenic | 50.0% | |
| ATTGGATGTCACGATGCAGG+TGG | + | chr4_2:58432819-58432838 | Msa0610610:CDS | 50.0% | |
| CCAAAGGGGATGATGCTTAC+TGG | - | chr4_2:58432858-58432877 | None:intergenic | 50.0% | |
| CCAGTAAGCATCATCCCCTT+TGG | + | chr4_2:58432855-58432874 | Msa0610610:intron | 50.0% | |
| GAATAGAGTTGACCCCTGCA+AGG | - | chr4_2:58432958-58432977 | None:intergenic | 50.0% | |
| CGTGTCACGTACTATGGCAA+AGG | + | chr4_2:58433210-58433229 | Msa0610610:CDS | 50.0% | |
| ! | GTAAAGAGTGCATGCCACGA+GGG | + | chr4_2:58433410-58433429 | Msa0610610:CDS | 50.0% |
| !! | GTGCACATTTGGTGCTCGTT+TGG | + | chr4_2:58433435-58433454 | Msa0610610:CDS | 50.0% |
| CAACTTGGCTCCTCCTCTTG+CGG | + | chr4_2:58430722-58430741 | Msa0610610:CDS | 55.0% | |
| TCTCCAATTTGCGCCACTCC+AGG | + | chr4_2:58430762-58430781 | Msa0610610:CDS | 55.0% | |
| CAACCTGGAGTGGCGCAAAT+TGG | - | chr4_2:58430768-58430787 | None:intergenic | 55.0% | |
| CAATTTGCGCCACTCCAGGT+TGG | + | chr4_2:58430766-58430785 | Msa0610610:intron | 55.0% | |
| AATCCCACCGTCCACTTGTG+GGG | - | chr4_2:58431040-58431059 | None:intergenic | 55.0% | |
| CAATCCCACCGTCCACTTGT+GGG | - | chr4_2:58431041-58431060 | None:intergenic | 55.0% | |
| !! | GTTGGTTCGGATCGGATCAG+TGG | + | chr4_2:58431692-58431711 | Msa0610610:intron | 55.0% |
| TCGGATCGGATCAGTGGCAT+TGG | + | chr4_2:58431698-58431717 | Msa0610610:intron | 55.0% | |
| !! | GGATCAGTGGCATTGGCCAA+TGG | + | chr4_2:58431705-58431724 | Msa0610610:intron | 55.0% |
| ! | GGTAAAGAGTGCATGCCACG+AGG | + | chr4_2:58433409-58433428 | Msa0610610:CDS | 55.0% |
| AGAAAGGCAGCCGCAAGAGG+AGG | - | chr4_2:58430735-58430754 | None:intergenic | 60.0% | |
| AGCAGAAAGGCAGCCGCAAG+AGG | - | chr4_2:58430738-58430757 | None:intergenic | 60.0% | |
| TTGAATGGGCCCCCCACAAG+TGG | + | chr4_2:58431026-58431045 | Msa0610610:intron | 60.0% | |
| ATCCCACCGTCCACTTGTGG+GGG | - | chr4_2:58431039-58431058 | None:intergenic | 60.0% | |
| CCAATCCCACCGTCCACTTG+TGG | - | chr4_2:58431042-58431061 | None:intergenic | 60.0% | |
| CCACAAGTGGACGGTGGGAT+TGG | + | chr4_2:58431039-58431058 | Msa0610610:intron | 60.0% | |
| GACGGTGGGATTGGACCCTT+CGG | + | chr4_2:58431048-58431067 | Msa0610610:intron | 60.0% | |
| CCAAATGTGCACTGCCCTCG+TGG | - | chr4_2:58433427-58433446 | None:intergenic | 60.0% | |
| CCACGAGGGCAGTGCACATT+TGG | + | chr4_2:58433424-58433443 | Msa0610610:CDS | 60.0% | |
| ATGGGCCCCCCACAAGTGGA+CGG | + | chr4_2:58431030-58431049 | Msa0610610:intron | 65.0% | |
| TCCCACCGTCCACTTGTGGG+GGG | - | chr4_2:58431038-58431057 | None:intergenic | 65.0% | |
| GCCCCCCACAAGTGGACGGT+GGG | + | chr4_2:58431034-58431053 | Msa0610610:intron | 70.0% | |
| GGCCCCCCACAAGTGGACGG+TGG | + | chr4_2:58431033-58431052 | Msa0610610:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 58430354 | 58433738 | 58430354 | ID=Msa0610610;Name=Msa0610610 |
| chr4_2 | mRNA | 58430354 | 58433738 | 58430354 | ID=Msa0610610-mRNA-1;Parent=Msa0610610;Name=Msa0610610-mRNA-1;_AED=0.19;_eAED=0.19;_QI=136|1|1|1|1|1|6|195|173 |
| chr4_2 | exon | 58430354 | 58430540 | 58430354 | ID=Msa0610610-mRNA-1:exon:15337;Parent=Msa0610610-mRNA-1 |
| chr4_2 | exon | 58430648 | 58430783 | 58430648 | ID=Msa0610610-mRNA-1:exon:15338;Parent=Msa0610610-mRNA-1 |
| chr4_2 | exon | 58432760 | 58432857 | 58432760 | ID=Msa0610610-mRNA-1:exon:15339;Parent=Msa0610610-mRNA-1 |
| chr4_2 | exon | 58432963 | 58432994 | 58432963 | ID=Msa0610610-mRNA-1:exon:15340;Parent=Msa0610610-mRNA-1 |
| chr4_2 | exon | 58433179 | 58433242 | 58433179 | ID=Msa0610610-mRNA-1:exon:15341;Parent=Msa0610610-mRNA-1 |
| chr4_2 | exon | 58433403 | 58433738 | 58433403 | ID=Msa0610610-mRNA-1:exon:15342;Parent=Msa0610610-mRNA-1 |
| chr4_2 | five_prime_UTR | 58430354 | 58430489 | 58430354 | ID=Msa0610610-mRNA-1:five_prime_utr;Parent=Msa0610610-mRNA-1 |
| chr4_2 | CDS | 58430490 | 58430540 | 58430490 | ID=Msa0610610-mRNA-1:cds;Parent=Msa0610610-mRNA-1 |
| chr4_2 | CDS | 58430648 | 58430783 | 58430648 | ID=Msa0610610-mRNA-1:cds;Parent=Msa0610610-mRNA-1 |
| chr4_2 | CDS | 58432760 | 58432857 | 58432760 | ID=Msa0610610-mRNA-1:cds;Parent=Msa0610610-mRNA-1 |
| chr4_2 | CDS | 58432963 | 58432994 | 58432963 | ID=Msa0610610-mRNA-1:cds;Parent=Msa0610610-mRNA-1 |
| chr4_2 | CDS | 58433179 | 58433242 | 58433179 | ID=Msa0610610-mRNA-1:cds;Parent=Msa0610610-mRNA-1 |
| chr4_2 | CDS | 58433403 | 58433543 | 58433403 | ID=Msa0610610-mRNA-1:cds;Parent=Msa0610610-mRNA-1 |
| chr4_2 | three_prime_UTR | 58433544 | 58433738 | 58433544 | ID=Msa0610610-mRNA-1:three_prime_utr;Parent=Msa0610610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
