Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693250 | XP_003607878.1 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 7.34e-124 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693250 | sp|Q93VA3|CYC6_ARATH | 73.485 | 132 | 35 | 0 | 40 | 171 | 44 | 175 | 7.71e-73 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693250 | A2Q293 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 3.51e-124 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017980 | Msa0693250 | 0.811719 | 6.082385e-51 | -8.615850e-47 |
| Msa0021240 | Msa0693250 | 0.806482 | 8.051247e-50 | -8.615850e-47 |
| Msa0024070 | Msa0693250 | 0.837299 | 5.643236e-57 | -8.615850e-47 |
| Msa0025340 | Msa0693250 | 0.826055 | 3.345619e-54 | -8.615850e-47 |
| Msa0027090 | Msa0693250 | 0.801018 | 1.097259e-48 | -8.615850e-47 |
| Msa0028410 | Msa0693250 | 0.827424 | 1.576210e-54 | -8.615850e-47 |
| Msa0028450 | Msa0693250 | 0.815229 | 1.028801e-51 | -8.615850e-47 |
| Msa0030710 | Msa0693250 | 0.822836 | 1.914213e-53 | -8.615850e-47 |
| Msa0044700 | Msa0693250 | 0.814432 | 1.544940e-51 | -8.615850e-47 |
| Msa0045530 | Msa0693250 | 0.811364 | 7.266325e-51 | -8.615850e-47 |
| Msa0046090 | Msa0693250 | 0.816622 | 5.029479e-52 | -8.615850e-47 |
| Msa0052180 | Msa0693250 | 0.806543 | 7.817307e-50 | -8.615850e-47 |
| Msa0058140 | Msa0693250 | 0.807347 | 5.283811e-50 | -8.615850e-47 |
| Msa0067820 | Msa0693250 | 0.833721 | 4.532481e-56 | -8.615850e-47 |
| Msa0079570 | Msa0693250 | 0.807396 | 5.159569e-50 | -8.615850e-47 |
| Msa0092750 | Msa0693250 | 0.806196 | 9.249474e-50 | -8.615850e-47 |
| Msa0093830 | Msa0693250 | 0.831948 | 1.249591e-55 | -8.615850e-47 |
| Msa0095190 | Msa0693250 | 0.800128 | 1.666593e-48 | -8.615850e-47 |
| Msa0097220 | Msa0693250 | 0.813672 | 2.273010e-51 | -8.615850e-47 |
| Msa0097490 | Msa0693250 | 0.830124 | 3.503560e-55 | -8.615850e-47 |
| Msa0097730 | Msa0693250 | 0.804665 | 1.936665e-49 | -8.615850e-47 |
| Msa0102290 | Msa0693250 | 0.836994 | 6.752538e-57 | -8.615850e-47 |
| Msa0113910 | Msa0693250 | 0.815921 | 7.214872e-52 | -8.615850e-47 |
| Msa0605670 | Msa0693250 | 0.800909 | 1.155335e-48 | -8.615850e-47 |
| Msa0606230 | Msa0693250 | 0.805544 | 1.268550e-49 | -8.615850e-47 |
| Msa0610610 | Msa0693250 | 0.992288 | 2.119088e-192 | -8.615850e-47 |
| Msa0616570 | Msa0693250 | 0.818072 | 2.372463e-52 | -8.615850e-47 |
| Msa0646710 | Msa0693250 | 0.809833 | 1.556357e-50 | -8.615850e-47 |
| Msa0649140 | Msa0693250 | 0.829784 | 4.239952e-55 | -8.615850e-47 |
| Msa0651250 | Msa0693250 | 0.927306 | 1.412943e-91 | -8.615850e-47 |
| Msa0655980 | Msa0693250 | 0.818081 | 2.361599e-52 | -8.615850e-47 |
| Msa0660160 | Msa0693250 | 0.811571 | 6.550078e-51 | -8.615850e-47 |
| Msa0661490 | Msa0693250 | 0.812727 | 3.664931e-51 | -8.615850e-47 |
| Msa0677160 | Msa0693250 | 0.804146 | 2.484986e-49 | -8.615850e-47 |
| Msa0693250 | Msa0694810 | 0.821147 | 4.711612e-53 | -8.615850e-47 |
| Msa0693250 | Msa0699900 | 0.820197 | 7.788666e-53 | -8.615850e-47 |
| Msa0693250 | Msa0708120 | 0.803997 | 2.668251e-49 | -8.615850e-47 |
| Msa0693250 | Msa0708450 | 0.808017 | 3.807067e-50 | -8.615850e-47 |
| Msa0693250 | Msa0720380 | 0.801119 | 1.046276e-48 | -8.615850e-47 |
| Msa0693250 | Msa0724120 | 0.819364 | 1.207417e-52 | -8.615850e-47 |
| Msa0693250 | Msa0748470 | 0.819289 | 1.256118e-52 | -8.615850e-47 |
| Msa0693250 | Msa0748890 | 0.810896 | 9.176850e-51 | -8.615850e-47 |
| Msa0693250 | Msa0749940 | 0.810271 | 1.252222e-50 | -8.615850e-47 |
| Msa0693250 | Msa0762860 | 0.803123 | 4.051676e-49 | -8.615850e-47 |
| Msa0693250 | Msa0762900 | 0.805008 | 1.642418e-49 | -8.615850e-47 |
| Msa0693250 | Msa0796840 | 0.812287 | 4.573936e-51 | -8.615850e-47 |
| Msa0693250 | Msa0803220 | 0.811494 | 6.809055e-51 | -8.615850e-47 |
| Msa0693250 | Msa0833980 | 0.802075 | 6.662242e-49 | -8.615850e-47 |
| Msa0693250 | Msa0841570 | 0.818066 | 2.379466e-52 | -8.615850e-47 |
| Msa0693250 | Msa0866650 | 0.804642 | 1.958423e-49 | -8.615850e-47 |
| Msa0693250 | Msa0879820 | 0.818917 | 1.525756e-52 | -8.615850e-47 |
| Msa0693250 | Msa0880200 | 0.826532 | 2.575848e-54 | -8.615850e-47 |
| Msa0693250 | Msa0910650 | 0.811114 | 8.229196e-51 | -8.615850e-47 |
| Msa0693250 | Msa0926090 | 0.811951 | 5.415307e-51 | -8.615850e-47 |
| Msa0693250 | Msa0929440 | 0.810745 | 9.895692e-51 | -8.615850e-47 |
| Msa0693250 | Msa0932040 | 0.816335 | 5.831937e-52 | -8.615850e-47 |
| Msa0693250 | Msa0933320 | 0.804184 | 2.440399e-49 | -8.615850e-47 |
| Msa0693250 | Msa0959970 | 0.834681 | 2.604471e-56 | -8.615850e-47 |
| Msa0693250 | Msa0967940 | 0.821293 | 4.361665e-53 | -8.615850e-47 |
| Msa0693250 | Msa0970120 | 0.818490 | 1.907562e-52 | -8.615850e-47 |
| Msa0693250 | Msa0970160 | 0.816995 | 4.148068e-52 | -8.615850e-47 |
| Msa0693250 | Msa0971100 | 0.804715 | 1.891477e-49 | -8.615850e-47 |
| Msa0693250 | Msa0985570 | 0.839905 | 1.197816e-57 | -8.615850e-47 |
| Msa0693250 | Msa1090230 | 0.803592 | 3.239402e-49 | -8.615850e-47 |
| Msa0693250 | Msa1095880 | 0.800142 | 1.655582e-48 | -8.615850e-47 |
| Msa0693250 | Msa1126980 | 0.833874 | 4.149898e-56 | -8.615850e-47 |
| Msa0693250 | Msa1134840 | 0.813119 | 3.007968e-51 | -8.615850e-47 |
| Msa0693250 | Msa1144470 | 0.808357 | 3.222019e-50 | -8.615850e-47 |
| Msa0693250 | Msa1154130 | 0.814332 | 1.625904e-51 | -8.615850e-47 |
| Msa0693250 | Msa1166020 | 0.816970 | 4.202609e-52 | -8.615850e-47 |
| Msa0693250 | Msa1177300 | 0.820518 | 6.574435e-53 | -8.615850e-47 |
| Msa0693250 | Msa1190670 | 0.836462 | 9.227958e-57 | -8.615850e-47 |
| Msa0693250 | Msa1197210 | 0.846290 | 2.382781e-59 | -8.615850e-47 |
| Msa0693250 | Msa1209390 | 0.818732 | 1.680939e-52 | -8.615850e-47 |
| Msa0693250 | Msa1209650 | 0.810156 | 1.325954e-50 | -8.615850e-47 |
| Msa0693250 | Msa1218310 | 0.800662 | 1.297623e-48 | -8.615850e-47 |
| Msa0693250 | Msa1221580 | 0.805166 | 1.521996e-49 | -8.615850e-47 |
| Msa0693250 | Msa1222020 | 0.815137 | 1.078686e-51 | -8.615850e-47 |
| Msa0693250 | Msa1223050 | 0.827624 | 1.411530e-54 | -8.615850e-47 |
| Msa0693250 | Msa1223520 | 0.821352 | 4.226452e-53 | -8.615850e-47 |
| Msa0693250 | Msa1223600 | 0.815529 | 8.822847e-52 | -8.615850e-47 |
| Msa0693250 | Msa1225280 | 0.806868 | 6.674604e-50 | -8.615850e-47 |
| Msa0693250 | Msa1226330 | 0.818155 | 2.271208e-52 | -8.615850e-47 |
| Msa0693250 | Msa1235960 | 0.801539 | 8.585658e-49 | -8.615850e-47 |
| Msa0693250 | Msa1236090 | 0.832411 | 9.601359e-56 | -8.615850e-47 |
| Msa0693250 | Msa1244940 | 0.832195 | 1.085524e-55 | -8.615850e-47 |
| Msa0693250 | Msa1250490 | 0.804547 | 2.050007e-49 | -8.615850e-47 |
| Msa0693250 | Msa1251830 | 0.826201 | 3.089108e-54 | -8.615850e-47 |
| Msa0693250 | Msa1251890 | 0.815364 | 9.602225e-52 | -8.615850e-47 |
| Msa0693250 | Msa1263460 | 0.816458 | 5.474099e-52 | -8.615850e-47 |
| Msa0693250 | Msa1263600 | 0.819822 | 9.489456e-53 | -8.615850e-47 |
| Msa0693250 | Msa1297490 | 0.802665 | 5.035994e-49 | -8.615850e-47 |
| Msa0693250 | Msa1297550 | 0.815743 | 7.906298e-52 | -8.615850e-47 |
| Msa0693250 | Msa1302750 | 0.822210 | 2.676333e-53 | -8.615850e-47 |
| Msa0693250 | Msa1303040 | 0.802978 | 4.341091e-49 | -8.615850e-47 |
| Msa0693250 | Msa1316090 | 0.812360 | 4.408703e-51 | -8.615850e-47 |
| Msa0693250 | Msa1317090 | 0.816720 | 4.780552e-52 | -8.615850e-47 |
| Msa0693250 | Msa1325260 | 0.838310 | 3.103297e-57 | -8.615850e-47 |
| Msa0693250 | Msa1325270 | 0.822426 | 2.384057e-53 | -8.615850e-47 |
| Msa0693250 | Msa1337950 | 0.809893 | 1.510373e-50 | -8.615850e-47 |
| Msa0693250 | Msa1348770 | 0.810479 | 1.129358e-50 | -8.615850e-47 |
| Msa0693250 | Msa1349720 | 0.808905 | 2.461650e-50 | -8.615850e-47 |
| Msa0693250 | Msa1356500 | 0.817486 | 3.216166e-52 | -8.615850e-47 |
| Msa0693250 | Msa1359950 | 0.803301 | 3.721774e-49 | -8.615850e-47 |
| Msa0693250 | Msa1364650 | 0.802243 | 6.153586e-49 | -8.615850e-47 |
| Msa0693250 | Msa1366400 | 0.815534 | 8.801252e-52 | -8.615850e-47 |
| Msa0693250 | Msa1371690 | 0.812753 | 3.617720e-51 | -8.615850e-47 |
| Msa0693250 | Msa1373340 | 0.811772 | 5.923140e-51 | -8.615850e-47 |
| Msa0693250 | Msa1387650 | 0.812177 | 4.832828e-51 | -8.615850e-47 |
| Msa0693250 | Msa1396310 | 0.821936 | 3.096616e-53 | -8.615850e-47 |
| Msa0693250 | Msa1412750 | 0.805070 | 1.593836e-49 | -8.615850e-47 |
| Msa0693250 | Msa1414280 | 0.806647 | 7.432631e-50 | -8.615850e-47 |
| Msa0693250 | Msa1428050 | 0.812942 | 3.288853e-51 | -8.615850e-47 |
| Msa0693250 | Msa1438380 | 0.814359 | 1.603435e-51 | -8.615850e-47 |
| Msa0693250 | Msa1444750 | 0.839060 | 1.986028e-57 | -8.615850e-47 |
| Msa0693250 | Msa1449320 | 0.807482 | 4.948201e-50 | -8.615850e-47 |
| Msa0693250 | Msa1449510 | 0.816173 | 6.337551e-52 | -8.615850e-47 |
| Msa0693250 | Msa1455000 | 0.817518 | 3.163879e-52 | -8.615850e-47 |
| Msa0693250 | Msa1465950 | 0.807713 | 4.418734e-50 | -8.615850e-47 |
| Msa0124070 | Msa0693250 | 0.830590 | 2.695597e-55 | -8.615850e-47 |
| Msa0127110 | Msa0693250 | 0.808176 | 3.522324e-50 | -8.615850e-47 |
| Msa0128840 | Msa0693250 | 0.811242 | 7.722749e-51 | -8.615850e-47 |
| Msa0131230 | Msa0693250 | 0.811177 | 7.977008e-51 | -8.615850e-47 |
| Msa0141090 | Msa0693250 | 0.812118 | 4.978659e-51 | -8.615850e-47 |
| Msa0145590 | Msa0693250 | 0.801839 | 7.449813e-49 | -8.615850e-47 |
| Msa0147070 | Msa0693250 | 0.848161 | 7.311773e-60 | -8.615850e-47 |
| Msa0170550 | Msa0693250 | 0.825964 | 3.518023e-54 | -8.615850e-47 |
| Msa0181380 | Msa0693250 | 0.830184 | 3.388026e-55 | -8.615850e-47 |
| Msa0186380 | Msa0693250 | 0.802149 | 6.433794e-49 | -8.615850e-47 |
| Msa0186750 | Msa0693250 | 0.823501 | 1.339144e-53 | -8.615850e-47 |
| Msa0225050 | Msa0693250 | 0.810282 | 1.245388e-50 | -8.615850e-47 |
| Msa0234930 | Msa0693250 | 0.805181 | 1.511407e-49 | -8.615850e-47 |
| Msa0370180 | Msa0693250 | 0.831669 | 1.464082e-55 | -8.615850e-47 |
| Msa0371050 | Msa0693250 | 0.832702 | 8.132154e-56 | -8.615850e-47 |
| Msa0374840 | Msa0693250 | 0.811305 | 7.483562e-51 | -8.615850e-47 |
| Msa0375100 | Msa0693250 | 0.817332 | 3.483142e-52 | -8.615850e-47 |
| Msa0376760 | Msa0693250 | 0.814227 | 1.715533e-51 | -8.615850e-47 |
| Msa0378530 | Msa0693250 | 0.801454 | 8.937120e-49 | -8.615850e-47 |
| Msa0379090 | Msa0693250 | 0.812085 | 5.062563e-51 | -8.615850e-47 |
| Msa0380470 | Msa0693250 | 0.811383 | 7.197342e-51 | -8.615850e-47 |
| Msa0383110 | Msa0693250 | 0.807539 | 4.810092e-50 | -8.615850e-47 |
| Msa0384570 | Msa0693250 | 0.832891 | 7.296746e-56 | -8.615850e-47 |
| Msa0385870 | Msa0693250 | 0.805064 | 1.598678e-49 | -8.615850e-47 |
| Msa0387120 | Msa0693250 | 0.806397 | 8.392083e-50 | -8.615850e-47 |
| Msa0415860 | Msa0693250 | 0.802866 | 4.578178e-49 | -8.615850e-47 |
| Msa0436110 | Msa0693250 | 0.800054 | 1.725383e-48 | -8.615850e-47 |
| Msa0439130 | Msa0693250 | 0.813120 | 3.006074e-51 | -8.615850e-47 |
| Msa0463980 | Msa0693250 | 0.805160 | 1.526159e-49 | -8.615850e-47 |
| Msa0471700 | Msa0693250 | 0.812871 | 3.409329e-51 | -8.615850e-47 |
| Msa0474220 | Msa0693250 | 0.800570 | 1.354868e-48 | -8.615850e-47 |
| Msa0474290 | Msa0693250 | 0.800664 | 1.296068e-48 | -8.615850e-47 |
| Msa0475080 | Msa0693250 | 0.819945 | 8.894275e-53 | -8.615850e-47 |
| Msa0482020 | Msa0693250 | 0.812104 | 5.013562e-51 | -8.615850e-47 |
| Msa0245690 | Msa0693250 | 0.805462 | 1.319538e-49 | -8.615850e-47 |
| Msa0266100 | Msa0693250 | 0.826027 | 3.398331e-54 | -8.615850e-47 |
| Msa0269790 | Msa0693250 | 0.832890 | 7.301574e-56 | -8.615850e-47 |
| Msa0273270 | Msa0693250 | 0.805028 | 1.626557e-49 | -8.615850e-47 |
| Msa0275260 | Msa0693250 | 0.805233 | 1.473799e-49 | -8.615850e-47 |
| Msa0284980 | Msa0693250 | 0.834691 | 2.589340e-56 | -8.615850e-47 |
| Msa0285510 | Msa0693250 | 0.820788 | 5.700539e-53 | -8.615850e-47 |
| Msa0288300 | Msa0693250 | 0.814888 | 1.224776e-51 | -8.615850e-47 |
| Msa0288350 | Msa0693250 | 0.801473 | 8.855507e-49 | -8.615850e-47 |
| Msa0288360 | Msa0693250 | 0.806859 | 6.702941e-50 | -8.615850e-47 |
| Msa0305810 | Msa0693250 | 0.821757 | 3.406766e-53 | -8.615850e-47 |
| Msa0307750 | Msa0693250 | 0.809203 | 2.125426e-50 | -8.615850e-47 |
| Msa0341710 | Msa0693250 | 0.822641 | 2.125080e-53 | -8.615850e-47 |
| Msa0485350 | Msa0693250 | 0.808759 | 2.644344e-50 | -8.615850e-47 |
| Msa0500580 | Msa0693250 | 0.803727 | 3.036438e-49 | -8.615850e-47 |
| Msa0506740 | Msa0693250 | 0.818180 | 2.242270e-52 | -8.615850e-47 |
| Msa0518720 | Msa0693250 | 0.802569 | 5.271457e-49 | -8.615850e-47 |
| Msa0521840 | Msa0693250 | 0.808648 | 2.792692e-50 | -8.615850e-47 |
| Msa0522510 | Msa0693250 | 0.819832 | 9.442400e-53 | -8.615850e-47 |
| Msa0524570 | Msa0693250 | 0.814012 | 1.913437e-51 | -8.615850e-47 |
| Msa0527420 | Msa0693250 | 0.818424 | 1.974797e-52 | -8.615850e-47 |
| Msa0550280 | Msa0693250 | 0.802950 | 4.398816e-49 | -8.615850e-47 |
| Msa0562040 | Msa0693250 | 0.817093 | 3.942820e-52 | -8.615850e-47 |
| Msa0562740 | Msa0693250 | 0.804067 | 2.581037e-49 | -8.615850e-47 |
| Msa0565930 | Msa0693250 | 0.814280 | 1.669929e-51 | -8.615850e-47 |
| Msa0574450 | Msa0693250 | 0.816806 | 4.573475e-52 | -8.615850e-47 |
| Msa0577910 | Msa0693250 | 0.804325 | 2.280650e-49 | -8.615850e-47 |
| Msa0578990 | Msa0693250 | 0.991447 | 1.069172e-187 | -8.615850e-47 |
| Msa0581190 | Msa0693250 | 0.813053 | 3.109905e-51 | -8.615850e-47 |
| Msa0581490 | Msa0693250 | 0.809596 | 1.749820e-50 | -8.615850e-47 |
| Msa0583810 | Msa0693250 | 0.830513 | 2.814855e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693250 | MtrunA17_Chr4g0043621 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 6.75e-128 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693250 | AT5G45040.1 | 73.485 | 132 | 35 | 0 | 40 | 171 | 44 | 175 | 7.84e-74 | 219 |
Find 50 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTTGCTTGTCTGATTTC+TGG | 0.156602 | 4_4:+62149674 | Msa0693250:CDS |
| CTCTTTGGATATCTATTGTT+TGG | 0.198050 | 4_4:-62151949 | None:intergenic |
| GGCTGAGTTTGTCAAGTTAC+AGG | 0.238541 | 4_4:+62152659 | Msa0693250:CDS |
| TTGCGGTCCAGAAGAGTTAT+TGG | 0.258091 | 4_4:-62152847 | None:intergenic |
| GTCAAGTTACAGGCTGATAA+AGG | 0.319514 | 4_4:+62152669 | Msa0693250:CDS |
| GAATTATCCAATAACTCTTC+TGG | 0.320875 | 4_4:+62152840 | Msa0693250:three_prime_UTR |
| CAACCTGGAGTGGCGCAAAT+TGG | 0.326523 | 4_4:-62149945 | None:intergenic |
| CCAGGAAACACACTAGGAAT+TGG | 0.330726 | 4_4:-62149559 | None:intergenic |
| TGAACAATGTTGCTCCTCTT+TGG | 0.345483 | 4_4:-62151964 | None:intergenic |
| CCACGAGGGCAGTGCACATT+TGG | 0.345899 | 4_4:+62152603 | Msa0693250:CDS |
| TCTTTGGATATCTATTGTTT+GGG | 0.347185 | 4_4:-62151948 | None:intergenic |
| CCAATTCCTAGTGTGTTTCC+TGG | 0.365226 | 4_4:+62149559 | Msa0693250:five_prime_UTR |
| ATCTACCGTGTCACGTACTA+TGG | 0.365275 | 4_4:+62152383 | Msa0693250:CDS |
| GTGCACATTTGGTGCTCGTT+TGG | 0.375964 | 4_4:+62152614 | Msa0693250:CDS |
| TCAGACAAGCAAGCTTCATT+TGG | 0.389961 | 4_4:-62149667 | None:intergenic |
| CCAACATATGAGGATATTCA+TGG | 0.412785 | 4_4:-62152906 | None:intergenic |
| CAATAATCCTGTCTCCATAA+AGG | 0.416161 | 4_4:+62149700 | Msa0693250:CDS |
| TTGTTCAGCCAAACATGTAT+TGG | 0.417027 | 4_4:+62151980 | Msa0693250:CDS |
| AGATGAAGATATCAAGATAT+TGG | 0.420639 | 4_4:+62152638 | Msa0693250:CDS |
| CGTGACATCCAATACATGTT+TGG | 0.423635 | 4_4:-62151988 | None:intergenic |
| CAGGAAACACACTAGGAATT+GGG | 0.443776 | 4_4:-62149558 | None:intergenic |
| ATTACAGGATAACGTGAAAC+GGG | 0.448174 | 4_4:+62149821 | Msa0693250:intron |
| TATAGTTCTACGCAGGGGTT+TGG | 0.449832 | 4_4:+62152567 | Msa0693250:intron |
| TCAAGTTACAGGCTGATAAA+GGG | 0.462996 | 4_4:+62152670 | Msa0693250:CDS |
| TCTCCAATTTGCGCCACTCC+AGG | 0.479406 | 4_4:+62149942 | Msa0693250:CDS |
| GATTACAGGATAACGTGAAA+CGG | 0.480757 | 4_4:+62149820 | Msa0693250:intron |
| ACCAATCCATAATGAAAAGA+TGG | 0.486136 | 4_4:-62152745 | None:intergenic |
| AAAACTTATGGCAGGTAACA+TGG | 0.498173 | 4_4:+62149521 | None:intergenic |
| GCGTGCGTATCTCAGATAGA+TGG | 0.511591 | 4_4:-62149617 | None:intergenic |
| AGTATAATGCACTTGTTACC+AGG | 0.530229 | 4_4:-62149577 | None:intergenic |
| TTATGGCAGGTAACATGGAA+TGG | 0.531680 | 4_4:+62149526 | None:intergenic |
| AGAAAGGCAGCCGCAAGAGG+AGG | 0.570107 | 4_4:-62149912 | None:intergenic |
| CCAAATGTGCACTGCCCTCG+TGG | 0.576137 | 4_4:-62152603 | None:intergenic |
| CAACTTGGCTCCTCCTCTTG+CGG | 0.582072 | 4_4:+62149902 | Msa0693250:CDS |
| AGCAGAAAGGCAGCCGCAAG+AGG | 0.590194 | 4_4:-62149915 | None:intergenic |
| TGTATTGGATGTCACGATGC+AGG | 0.593033 | 4_4:+62151995 | Msa0693250:CDS |
| AAGAGGTAACCAACCTGGAG+TGG | 0.599652 | 4_4:-62149955 | None:intergenic |
| CGTGTCACGTACTATGGCAA+AGG | 0.616930 | 4_4:+62152389 | Msa0693250:CDS |
| CAAACAATAGATATCCAAAG+AGG | 0.625176 | 4_4:+62151950 | Msa0693250:CDS |
| CTATGGCAAAGGAAGAATGC+CGG | 0.626553 | 4_4:+62152400 | Msa0693250:CDS |
| AATTGGAGAAAATAGCAGAA+AGG | 0.628466 | 4_4:-62149928 | None:intergenic |
| CTTTGCCATAGTACGTGACA+CGG | 0.648192 | 4_4:-62152388 | None:intergenic |
| TTGTTACCAGGAAACACACT+AGG | 0.649741 | 4_4:-62149565 | None:intergenic |
| TATTCACAAAGGATTTACAA+AGG | 0.666724 | 4_4:+62152152 | Msa0693250:CDS |
| GGTAAAGAGTGCATGCCACG+AGG | 0.676403 | 4_4:+62152588 | Msa0693250:CDS |
| ATCGTCTATATAATTAATTG+CGG | 0.680726 | 4_4:-62152864 | None:intergenic |
| GTAAAGAGTGCATGCCACGA+GGG | 0.681699 | 4_4:+62152589 | Msa0693250:CDS |
| AGTTACAGGCTGATAAAGGG+TGG | 0.682583 | 4_4:+62152673 | Msa0693250:CDS |
| GGGGTCAACTCTATTCACAA+AGG | 0.702168 | 4_4:+62152141 | Msa0693250:intron |
| ATTGGATGTCACGATGCAGG+TGG | 0.703936 | 4_4:+62151998 | Msa0693250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAATATTATATTGTG+AGG | - | chr4_4:62149793-62149812 | None:intergenic | 10.0% |
| !! | TATTTATCAAAAAAACATAT+TGG | + | chr4_4:62151674-62151693 | Msa0693250:intron | 10.0% |
| !!! | TTATATTTTTGTATATGTTT+TGG | + | chr4_4:62152805-62152824 | Msa0693250:three_prime_UTR | 10.0% |
| !!! | TATATTTTTGTATATGTTTT+GGG | + | chr4_4:62152806-62152825 | Msa0693250:three_prime_UTR | 10.0% |
| !!! | AGTTTAGTATTTTAAAAAAG+AGG | - | chr4_4:62149975-62149994 | None:intergenic | 15.0% |
| !! | CATTTCTAAATTAAATTGAA+GGG | - | chr4_4:62150597-62150616 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTCTACAATA+AGG | - | chr4_4:62151321-62151340 | None:intergenic | 15.0% |
| !! | ACATAACAATTAATATACTA+AGG | - | chr4_4:62151355-62151374 | None:intergenic | 15.0% |
| !! | TAATTAAGACATTTGATTAC+AGG | + | chr4_4:62149806-62149825 | Msa0693250:intron | 20.0% |
| !! | TCTATATAGAGAAAATTGAA+TGG | + | chr4_4:62150191-62150210 | Msa0693250:intron | 20.0% |
| !! | CTATATAGAGAAAATTGAAT+GGG | + | chr4_4:62150192-62150211 | Msa0693250:intron | 20.0% |
| !!! | TTTTTTTAAAACTCAGTATC+CGG | - | chr4_4:62150270-62150289 | None:intergenic | 20.0% |
| !!! | AGAAAAAAGCTTTGATTTAA+TGG | - | chr4_4:62150327-62150346 | None:intergenic | 20.0% |
| !! | CCATTTCTAAATTAAATTGA+AGG | - | chr4_4:62150598-62150617 | None:intergenic | 20.0% |
| !!! | CCTTCAATTTAATTTAGAAA+TGG | + | chr4_4:62150595-62150614 | Msa0693250:intron | 20.0% |
| !! | ACTTTGCATAAATTTCAATA+TGG | - | chr4_4:62151068-62151087 | None:intergenic | 20.0% |
| !! | ATATTGAAATTTATGCAAAG+TGG | + | chr4_4:62151067-62151086 | Msa0693250:intron | 20.0% |
| !!! | AAAGCACTAAATTTATCAAA+AGG | + | chr4_4:62152181-62152200 | Msa0693250:intron | 20.0% |
| !! | AAGCACTAAATTTATCAAAA+GGG | + | chr4_4:62152182-62152201 | Msa0693250:intron | 20.0% |
| !! | TATTCATATAAAAATTGCTC+TGG | + | chr4_4:62152265-62152284 | Msa0693250:intron | 20.0% |
| !! | TAAATGTTGTTCTATAGAAA+TGG | + | chr4_4:62152341-62152360 | Msa0693250:intron | 20.0% |
| !! | ATCGTCTATATAATTAATTG+CGG | - | chr4_4:62152867-62152886 | None:intergenic | 20.0% |
| ! | ACAAAACAAATAAGAGTGAA+TGG | - | chr4_4:62150037-62150056 | None:intergenic | 25.0% |
| !! | AGCATATTTTACTGTTTTAC+TGG | - | chr4_4:62150368-62150387 | None:intergenic | 25.0% |
| ! | TTCTAAATTAAATTGAAGGG+AGG | - | chr4_4:62150594-62150613 | None:intergenic | 25.0% |
| ! | AATGACTCGTTGAAAATTAA+AGG | + | chr4_4:62150639-62150658 | Msa0693250:intron | 25.0% |
| !! | AAACAATCATTTGTGTTTTG+AGG | + | chr4_4:62150729-62150748 | Msa0693250:intron | 25.0% |
| !!! | AACAATCATTTGTGTTTTGA+GGG | + | chr4_4:62150730-62150749 | Msa0693250:intron | 25.0% |
| !!! | ATGAAGTTAGTTTTTAGTCT+TGG | + | chr4_4:62150808-62150827 | Msa0693250:intron | 25.0% |
| !!! | ACAAATCAACTAGTTTTTTC+AGG | + | chr4_4:62150940-62150959 | Msa0693250:intron | 25.0% |
| ! | ATCAATGTTAAGATTGAAAG+AGG | - | chr4_4:62151099-62151118 | None:intergenic | 25.0% |
| ! | TCTTTCAATCTTAACATTGA+TGG | + | chr4_4:62151098-62151117 | Msa0693250:intron | 25.0% |
| !!! | TTTATTTTTCCTCTTGAACT+GGG | - | chr4_4:62151705-62151724 | None:intergenic | 25.0% |
| !!! | ATTTATTTTTCCTCTTGAAC+TGG | - | chr4_4:62151706-62151725 | None:intergenic | 25.0% |
| ! | TCTTTGGATATCTATTGTTT+GGG | - | chr4_4:62151951-62151970 | None:intergenic | 25.0% |
| !!! | ATATATCTAGCTTTATGTTC+TGG | + | chr4_4:62152061-62152080 | Msa0693250:intron | 25.0% |
| ! | AAGGAGAAAAAAAAAGGAAA+GGG | - | chr4_4:62152118-62152137 | None:intergenic | 25.0% |
| ! | TATTCACAAAGGATTTACAA+AGG | + | chr4_4:62152152-62152171 | Msa0693250:CDS | 25.0% |
| ! | AGCACTAAATTTATCAAAAG+GGG | + | chr4_4:62152183-62152202 | Msa0693250:intron | 25.0% |
| !!! | CATTGATTAGCTTTCATTTT+AGG | - | chr4_4:62152291-62152310 | None:intergenic | 25.0% |
| ! | AGATGAAGATATCAAGATAT+TGG | + | chr4_4:62152638-62152657 | Msa0693250:CDS | 25.0% |
| !!! | GTTGCTAAATCATTTTTGTT+CGG | - | chr4_4:62152712-62152731 | None:intergenic | 25.0% |
| ! | AGCAATGTCTTTTACCTTTA+TGG | - | chr4_4:62149717-62149736 | None:intergenic | 30.0% |
| AATATTATATTGTGAGGCTG+AGG | - | chr4_4:62149787-62149806 | None:intergenic | 30.0% | |
| !! | AGTCAAGTTTTTCAACAACT+TGG | + | chr4_4:62149887-62149906 | Msa0693250:CDS | 30.0% |
| AATTGGAGAAAATAGCAGAA+AGG | - | chr4_4:62149931-62149950 | None:intergenic | 30.0% | |
| AGCAATTTGAACAAAAAAGC+GGG | - | chr4_4:62150000-62150019 | None:intergenic | 30.0% | |
| GAGCAATTTGAACAAAAAAG+CGG | - | chr4_4:62150001-62150020 | None:intergenic | 30.0% | |
| TTGTACAAACTAGAAAGTAG+TGG | + | chr4_4:62150083-62150102 | Msa0693250:intron | 30.0% | |
| AAACTGTAAAGAACCATCTT+AGG | + | chr4_4:62150479-62150498 | Msa0693250:intron | 30.0% | |
| GTTAAATCACAAACCTAAGA+TGG | - | chr4_4:62150495-62150514 | None:intergenic | 30.0% | |
| TAATGTTCAAAGATCCTACA+TGG | - | chr4_4:62150517-62150536 | None:intergenic | 30.0% | |
| !! | TGAAAATTAAAGGAGCATTG+TGG | + | chr4_4:62150649-62150668 | Msa0693250:intron | 30.0% |
| TGGACATACATTAGGAATTT+AGG | - | chr4_4:62150690-62150709 | None:intergenic | 30.0% | |
| AAACATCTTGGACATACATT+AGG | - | chr4_4:62150698-62150717 | None:intergenic | 30.0% | |
| GTGGGAGAAATTTATAAGTA+TGG | + | chr4_4:62150775-62150794 | Msa0693250:intron | 30.0% | |
| AACTTAAAAACTCCCAAAGT+TGG | + | chr4_4:62150853-62150872 | Msa0693250:intron | 30.0% | |
| TAAAGATGCCAAAAATTGTC+AGG | - | chr4_4:62150979-62150998 | None:intergenic | 30.0% | |
| ! | TTGTTTTCACTATAAAGCAG+GGG | - | chr4_4:62151045-62151064 | None:intergenic | 30.0% |
| !! | GTTGTTTTCACTATAAAGCA+GGG | - | chr4_4:62151046-62151065 | None:intergenic | 30.0% |
| AATGTTAAGATTGAAAGAGG+TGG | - | chr4_4:62151096-62151115 | None:intergenic | 30.0% | |
| ! | ATATAGAAGTTGATTGACCA+AGG | - | chr4_4:62151211-62151230 | None:intergenic | 30.0% |
| TGGTCAATCAACTTCTATAT+TGG | + | chr4_4:62151211-62151230 | Msa0693250:intron | 30.0% | |
| !!! | TTAGTATTTTTTCCTTCACC+AGG | + | chr4_4:62151374-62151393 | Msa0693250:intron | 30.0% |
| ! | GATGTTTGAGATGTAAACTA+AGG | - | chr4_4:62151440-62151459 | None:intergenic | 30.0% |
| ACATCTCAAACATCTTCTTA+CGG | + | chr4_4:62151446-62151465 | Msa0693250:intron | 30.0% | |
| CTTACGATACATATGGTTAT+TGG | - | chr4_4:62151511-62151530 | None:intergenic | 30.0% | |
| CAATAACCATATGTATCGTA+AGG | + | chr4_4:62151509-62151528 | Msa0693250:intron | 30.0% | |
| AAAATGAGTTTCAGCTAAGA+GGG | - | chr4_4:62151609-62151628 | None:intergenic | 30.0% | |
| TAAAATGAGTTTCAGCTAAG+AGG | - | chr4_4:62151610-62151629 | None:intergenic | 30.0% | |
| ! | TTACATGCTCATTGACTATT+TGG | - | chr4_4:62151739-62151758 | None:intergenic | 30.0% |
| AAATAGTCAATGAGCATGTA+AGG | + | chr4_4:62151738-62151757 | Msa0693250:intron | 30.0% | |
| ATTAATCAGAATCCTGAGTA+TGG | - | chr4_4:62151791-62151810 | None:intergenic | 30.0% | |
| TATAACAACTTCAAGTCGAT+TGG | - | chr4_4:62151870-62151889 | None:intergenic | 30.0% | |
| CTCTTTGGATATCTATTGTT+TGG | - | chr4_4:62151952-62151971 | None:intergenic | 30.0% | |
| CAAACAATAGATATCCAAAG+AGG | + | chr4_4:62151950-62151969 | Msa0693250:CDS | 30.0% | |
| CAAGGAGAAAAAAAAAGGAA+AGG | - | chr4_4:62152119-62152138 | None:intergenic | 30.0% | |
| ! | TCTTTTCGAATTTGTGTAGA+CGG | + | chr4_4:62152230-62152249 | Msa0693250:intron | 30.0% |
| AGGATAATCATTAAAGCAGA+AGG | - | chr4_4:62152464-62152483 | None:intergenic | 30.0% | |
| ! | TCTCTTCCATCTTTTCATTA+TGG | + | chr4_4:62152739-62152758 | Msa0693250:three_prime_UTR | 30.0% |
| ! | TCCATCTTTTCATTATGGAT+TGG | + | chr4_4:62152744-62152763 | Msa0693250:three_prime_UTR | 30.0% |
| ACCAATCCATAATGAAAAGA+TGG | - | chr4_4:62152748-62152767 | None:intergenic | 30.0% | |
| !!! | TATGTTTTGGGTTGAGATAA+TGG | + | chr4_4:62152818-62152837 | Msa0693250:three_prime_UTR | 30.0% |
| GAATTATCCAATAACTCTTC+TGG | + | chr4_4:62152840-62152859 | Msa0693250:three_prime_UTR | 30.0% | |
| ! | AGTATAATGCACTTGTTACC+AGG | - | chr4_4:62149580-62149599 | None:intergenic | 35.0% |
| CAATAATCCTGTCTCCATAA+AGG | + | chr4_4:62149700-62149719 | Msa0693250:CDS | 35.0% | |
| ! | TCTTTTACCTTTATGGAGAC+AGG | - | chr4_4:62149710-62149729 | None:intergenic | 35.0% |
| GATTACAGGATAACGTGAAA+CGG | + | chr4_4:62149820-62149839 | Msa0693250:intron | 35.0% | |
| ATTACAGGATAACGTGAAAC+GGG | + | chr4_4:62149821-62149840 | Msa0693250:intron | 35.0% | |
| TAAAAAAGAGGTAACCAACC+TGG | - | chr4_4:62149963-62149982 | None:intergenic | 35.0% | |
| GCAATTTGAACAAAAAAGCG+GGG | - | chr4_4:62149999-62150018 | None:intergenic | 35.0% | |
| AAATAAGAGTGAATGGCATG+GGG | - | chr4_4:62150030-62150049 | None:intergenic | 35.0% | |
| CAAATAAGAGTGAATGGCAT+GGG | - | chr4_4:62150031-62150050 | None:intergenic | 35.0% | |
| ACAAATAAGAGTGAATGGCA+TGG | - | chr4_4:62150032-62150051 | None:intergenic | 35.0% | |
| AGCCCAACTAATTTGGTATT+GGG | - | chr4_4:62150169-62150188 | None:intergenic | 35.0% | |
| TAGCCCAACTAATTTGGTAT+TGG | - | chr4_4:62150170-62150189 | None:intergenic | 35.0% | |
| ! | ATAGACTAGCCCAACTAATT+TGG | - | chr4_4:62150176-62150195 | None:intergenic | 35.0% |
| GTGTAACTCAAAGTAATGCA+AGG | + | chr4_4:62150447-62150466 | Msa0693250:intron | 35.0% | |
| GGTTTGTGATTTAACCATGT+AGG | + | chr4_4:62150500-62150519 | Msa0693250:intron | 35.0% | |
| ATTAAATTGAAGGGAGGACA+AGG | - | chr4_4:62150588-62150607 | None:intergenic | 35.0% | |
| TCCAAGATGTTTGTAAGTTC+AGG | + | chr4_4:62150706-62150725 | Msa0693250:intron | 35.0% | |
| TCCTGAACTTACAAACATCT+TGG | - | chr4_4:62150710-62150729 | None:intergenic | 35.0% | |
| TAACGTGACTATGGATTTGT+GGG | + | chr4_4:62150757-62150776 | Msa0693250:intron | 35.0% | |
| !! | TTAGTCTTGGTCTGTTTCAA+TGG | + | chr4_4:62150821-62150840 | Msa0693250:intron | 35.0% |
| ! | AAAAACTCCCAAAGTTGGTT+CGG | + | chr4_4:62150858-62150877 | Msa0693250:intron | 35.0% |
| GTCATGATACCAAATACCAT+TGG | - | chr4_4:62150903-62150922 | None:intergenic | 35.0% | |
| CCAAAAATTGTCAGGATCAA+AGG | - | chr4_4:62150971-62150990 | None:intergenic | 35.0% | |
| ! | CCTTTGATCCTGACAATTTT+TGG | + | chr4_4:62150968-62150987 | Msa0693250:intron | 35.0% |
| ! | TGTTTTCACTATAAAGCAGG+GGG | - | chr4_4:62151044-62151063 | None:intergenic | 35.0% |
| !! | GGTTGTTTTCACTATAAAGC+AGG | - | chr4_4:62151047-62151066 | None:intergenic | 35.0% |
| GGTTCTCATTACAGTGTTAA+TGG | + | chr4_4:62151119-62151138 | Msa0693250:intron | 35.0% | |
| TCCCTGCAATCTATTTATGT+GGG | + | chr4_4:62151287-62151306 | Msa0693250:intron | 35.0% | |
| ACCCACATAAATAGATTGCA+GGG | - | chr4_4:62151291-62151310 | None:intergenic | 35.0% | |
| GAACTAAACAAGGAAATTCC+TGG | - | chr4_4:62151395-62151414 | None:intergenic | 35.0% | |
| TTGACTGTGTGAACTAAACA+AGG | - | chr4_4:62151405-62151424 | None:intergenic | 35.0% | |
| TGAAGATATCATCATACCCA+AGG | - | chr4_4:62151563-62151582 | None:intergenic | 35.0% | |
| TGGGTATGATGATATCTTCA+AGG | + | chr4_4:62151563-62151582 | Msa0693250:intron | 35.0% | |
| GCAAGTAGCAAGTGATAAAT+AGG | + | chr4_4:62151812-62151831 | Msa0693250:intron | 35.0% | |
| TTGTTCAGCCAAACATGTAT+TGG | + | chr4_4:62151980-62151999 | Msa0693250:CDS | 35.0% | |
| CTAGATATATCATGCCAAAG+GGG | - | chr4_4:62152051-62152070 | None:intergenic | 35.0% | |
| GCTAGATATATCATGCCAAA+GGG | - | chr4_4:62152052-62152071 | None:intergenic | 35.0% | |
| AGCTAGATATATCATGCCAA+AGG | - | chr4_4:62152053-62152072 | None:intergenic | 35.0% | |
| !!! | TCCTTTTTTTTTCTCCTTGC+AGG | + | chr4_4:62152120-62152139 | Msa0693250:intron | 35.0% |
| !!! | CCTTTTTTTTTCTCCTTGCA+GGG | + | chr4_4:62152121-62152140 | Msa0693250:intron | 35.0% |
| !!! | CTTTTTTTTTCTCCTTGCAG+GGG | + | chr4_4:62152122-62152141 | Msa0693250:intron | 35.0% |
| GTCTAAGTAAGACATCTTAC+CGG | - | chr4_4:62152422-62152441 | None:intergenic | 35.0% | |
| CTTACTTAGACTTCAGACAT+AGG | + | chr4_4:62152431-62152450 | Msa0693250:intron | 35.0% | |
| CCATAAGGCATAAACTATGA+AGG | - | chr4_4:62152484-62152503 | None:intergenic | 35.0% | |
| CCTTCATAGTTTATGCCTTA+TGG | + | chr4_4:62152481-62152500 | Msa0693250:intron | 35.0% | |
| TCAAGTTACAGGCTGATAAA+GGG | + | chr4_4:62152670-62152689 | Msa0693250:CDS | 35.0% | |
| ! | TTTTGTTCGGTTTCAATGCT+TGG | - | chr4_4:62152699-62152718 | None:intergenic | 35.0% |
| CAGGAAACACACTAGGAATT+GGG | - | chr4_4:62149561-62149580 | None:intergenic | 40.0% | |
| TTGTTACCAGGAAACACACT+AGG | - | chr4_4:62149568-62149587 | None:intergenic | 40.0% | |
| TCAGACAAGCAAGCTTCATT+TGG | - | chr4_4:62149670-62149689 | None:intergenic | 40.0% | |
| ! | AAGCTTGCTTGTCTGATTTC+TGG | + | chr4_4:62149674-62149693 | Msa0693250:CDS | 40.0% |
| ! | CTAGAGAGGTGCATAATTCA+AGG | - | chr4_4:62150129-62150148 | None:intergenic | 40.0% |
| CTTGAATTATGCACCTCTCT+AGG | + | chr4_4:62150127-62150146 | Msa0693250:intron | 40.0% | |
| TCCCCCAATACCAAATTAGT+TGG | + | chr4_4:62150163-62150182 | Msa0693250:intron | 40.0% | |
| ! | CCCAACTAATTTGGTATTGG+GGG | - | chr4_4:62150167-62150186 | None:intergenic | 40.0% |
| CCCCCAATACCAAATTAGTT+GGG | + | chr4_4:62150164-62150183 | Msa0693250:intron | 40.0% | |
| GCCCAACTAATTTGGTATTG+GGG | - | chr4_4:62150168-62150187 | None:intergenic | 40.0% | |
| TAAGGACTGACTAATCCGAA+GGG | - | chr4_4:62150246-62150265 | None:intergenic | 40.0% | |
| TAAAACTCAGTATCCGGCTA+AGG | - | chr4_4:62150264-62150283 | None:intergenic | 40.0% | |
| TTCAACGAGTCATTTGCCAA+GGG | - | chr4_4:62150633-62150652 | None:intergenic | 40.0% | |
| TTTCAACGAGTCATTTGCCA+AGG | - | chr4_4:62150634-62150653 | None:intergenic | 40.0% | |
| GTAACGTGACTATGGATTTG+TGG | + | chr4_4:62150756-62150775 | Msa0693250:intron | 40.0% | |
| ! | GCTTTTGCAACAGATGTTGA+TGG | - | chr4_4:62151022-62151041 | None:intergenic | 40.0% |
| !!! | AATGGCCTTTTAGCTTGTAG+AGG | + | chr4_4:62151137-62151156 | Msa0693250:intron | 40.0% |
| TAAGGCCTCTACAAGCTAAA+AGG | - | chr4_4:62151145-62151164 | None:intergenic | 40.0% | |
| !! | ACGAACAAGACTTTAAGGCT+CGG | - | chr4_4:62151237-62151256 | None:intergenic | 40.0% |
| AAGCCACGAACAAGACTTTA+AGG | - | chr4_4:62151242-62151261 | None:intergenic | 40.0% | |
| AGATTGCAGGGACAAATACT+TGG | - | chr4_4:62151279-62151298 | None:intergenic | 40.0% | |
| GTCCCTGCAATCTATTTATG+TGG | + | chr4_4:62151286-62151305 | Msa0693250:intron | 40.0% | |
| GACCCACATAAATAGATTGC+AGG | - | chr4_4:62151292-62151311 | None:intergenic | 40.0% | |
| AACAAGGAAATTCCTGGTGA+AGG | - | chr4_4:62151389-62151408 | None:intergenic | 40.0% | |
| CTCTCAATCAATCAGCATCA+GGG | - | chr4_4:62151475-62151494 | None:intergenic | 40.0% | |
| TCTCTCAATCAATCAGCATC+AGG | - | chr4_4:62151476-62151495 | None:intergenic | 40.0% | |
| ! | TGCTGATTGATTGAGAGAGA+CGG | + | chr4_4:62151478-62151497 | Msa0693250:intron | 40.0% |
| TGTTCGCCTTACGATACATA+TGG | - | chr4_4:62151518-62151537 | None:intergenic | 40.0% | |
| CTGATGAGTTAGCAAACCTT+GGG | + | chr4_4:62151544-62151563 | Msa0693250:intron | 40.0% | |
| ATAGCTAACTAGCTAAGCGA+GGG | - | chr4_4:62151639-62151658 | None:intergenic | 40.0% | |
| AATAGCTAACTAGCTAAGCG+AGG | - | chr4_4:62151640-62151659 | None:intergenic | 40.0% | |
| TTGGAAAATCCCAGTTCAAG+AGG | + | chr4_4:62151693-62151712 | Msa0693250:intron | 40.0% | |
| TAGACAAGATCTCCATACTC+AGG | + | chr4_4:62151776-62151795 | Msa0693250:intron | 40.0% | |
| TGAACAATGTTGCTCCTCTT+TGG | - | chr4_4:62151967-62151986 | None:intergenic | 40.0% | |
| CGTGACATCCAATACATGTT+TGG | - | chr4_4:62151991-62152010 | None:intergenic | 40.0% | |
| CCCTGCAAGGAGAAAAAAAA+AGG | - | chr4_4:62152124-62152143 | None:intergenic | 40.0% | |
| CCTAAGCTTAGCTAACCATA+AGG | - | chr4_4:62152499-62152518 | None:intergenic | 40.0% | |
| ! | CCTTATGGTTAGCTAAGCTT+AGG | + | chr4_4:62152496-62152515 | Msa0693250:intron | 40.0% |
| ! | AGTCATGTATAGTTCTACGC+AGG | + | chr4_4:62152560-62152579 | Msa0693250:intron | 40.0% |
| ! | GTCATGTATAGTTCTACGCA+GGG | + | chr4_4:62152561-62152580 | Msa0693250:intron | 40.0% |
| ! | TCATGTATAGTTCTACGCAG+GGG | + | chr4_4:62152562-62152581 | Msa0693250:intron | 40.0% |
| GTCAAGTTACAGGCTGATAA+AGG | + | chr4_4:62152669-62152688 | Msa0693250:CDS | 40.0% | |
| CCAGGAAACACACTAGGAAT+TGG | - | chr4_4:62149562-62149581 | None:intergenic | 45.0% | |
| CCAATTCCTAGTGTGTTTCC+TGG | + | chr4_4:62149559-62149578 | Msa0693250:five_prime_UTR | 45.0% | |
| GGTGCATAATTCAAGGTCAC+AGG | - | chr4_4:62150122-62150141 | None:intergenic | 45.0% | |
| ATGAAACCTCAGACCTAGAG+AGG | - | chr4_4:62150143-62150162 | None:intergenic | 45.0% | |
| CTAAGGACTGACTAATCCGA+AGG | - | chr4_4:62150247-62150266 | None:intergenic | 45.0% | |
| GTCATTTGCCAAGGGAGTTT+GGG | - | chr4_4:62150625-62150644 | None:intergenic | 45.0% | |
| AGTCATTTGCCAAGGGAGTT+TGG | - | chr4_4:62150626-62150645 | None:intergenic | 45.0% | |
| GAGGGATTGTAACGTGACTA+TGG | + | chr4_4:62150748-62150767 | Msa0693250:intron | 45.0% | |
| ATCCGATCCGAACCAACTTT+GGG | - | chr4_4:62150868-62150887 | None:intergenic | 45.0% | |
| !! | TGGCATTGGCCAATGGTATT+TGG | + | chr4_4:62150891-62150910 | Msa0693250:intron | 45.0% |
| ! | TTTACACAGCCAGCTTGCTT+TGG | + | chr4_4:62150995-62151014 | Msa0693250:intron | 45.0% |
| ! | TTACCAAGGATTCTGAGGGT+CGG | + | chr4_4:62151162-62151181 | Msa0693250:intron | 45.0% |
| ! | TCTGAGGGTCGGTTTATTTG+TGG | + | chr4_4:62151173-62151192 | Msa0693250:intron | 45.0% |
| TGTGGCTTCGTTTGTATCCT+TGG | + | chr4_4:62151191-62151210 | Msa0693250:intron | 45.0% | |
| !! | GAGCCTTAAAGTCTTGTTCG+TGG | + | chr4_4:62151236-62151255 | Msa0693250:intron | 45.0% |
| CAGGGACAAATACTTGGTTC+TGG | - | chr4_4:62151273-62151292 | None:intergenic | 45.0% | |
| GCTGATGAGTTAGCAAACCT+TGG | + | chr4_4:62151543-62151562 | Msa0693250:intron | 45.0% | |
| TGTATTGGATGTCACGATGC+AGG | + | chr4_4:62151995-62152014 | Msa0693250:CDS | 45.0% | |
| GGGGTCAACTCTATTCACAA+AGG | + | chr4_4:62152141-62152160 | Msa0693250:intron | 45.0% | |
| ATCTACCGTGTCACGTACTA+TGG | + | chr4_4:62152383-62152402 | Msa0693250:CDS | 45.0% | |
| CTTTGCCATAGTACGTGACA+CGG | - | chr4_4:62152391-62152410 | None:intergenic | 45.0% | |
| CTATGGCAAAGGAAGAATGC+CGG | + | chr4_4:62152400-62152419 | Msa0693250:CDS | 45.0% | |
| ! | TATAGTTCTACGCAGGGGTT+TGG | + | chr4_4:62152567-62152586 | Msa0693250:intron | 45.0% |
| GGCTGAGTTTGTCAAGTTAC+AGG | + | chr4_4:62152659-62152678 | Msa0693250:CDS | 45.0% | |
| AGTTACAGGCTGATAAAGGG+TGG | + | chr4_4:62152673-62152692 | Msa0693250:CDS | 45.0% | |
| TTGCGGTCCAGAAGAGTTAT+TGG | - | chr4_4:62152850-62152869 | None:intergenic | 45.0% | |
| GCGTGCGTATCTCAGATAGA+TGG | - | chr4_4:62149620-62149639 | None:intergenic | 50.0% | |
| AAGAGGTAACCAACCTGGAG+TGG | - | chr4_4:62149958-62149977 | None:intergenic | 50.0% | |
| TATGCACCTCTCTAGGTCTG+AGG | + | chr4_4:62150134-62150153 | Msa0693250:intron | 50.0% | |
| !! | CGGATTAGTCAGTCCTTAGC+CGG | + | chr4_4:62150248-62150267 | Msa0693250:intron | 50.0% |
| TCTCATTGTGCTGCACAGAC+TGG | - | chr4_4:62150551-62150570 | None:intergenic | 50.0% | |
| ATGGTAAGCCCAAACTCCCT+TGG | + | chr4_4:62150614-62150633 | Msa0693250:intron | 50.0% | |
| !! | CTCCCAAAGTTGGTTCGGAT+CGG | + | chr4_4:62150863-62150882 | Msa0693250:intron | 50.0% |
| GATCCGATCCGAACCAACTT+TGG | - | chr4_4:62150869-62150888 | None:intergenic | 50.0% | |
| ! | GTTGATGGACCAAAGCAAGC+TGG | - | chr4_4:62151007-62151026 | None:intergenic | 50.0% |
| AGCTTGTAGAGGCCTTACCA+AGG | + | chr4_4:62151148-62151167 | Msa0693250:intron | 50.0% | |
| AGGCCTTACCAAGGATTCTG+AGG | + | chr4_4:62151157-62151176 | Msa0693250:intron | 50.0% | |
| GGCCTTACCAAGGATTCTGA+GGG | + | chr4_4:62151158-62151177 | Msa0693250:intron | 50.0% | |
| GACCCTCAGAATCCTTGGTA+AGG | - | chr4_4:62151163-62151182 | None:intergenic | 50.0% | |
| AAACCGACCCTCAGAATCCT+TGG | - | chr4_4:62151168-62151187 | None:intergenic | 50.0% | |
| ATTGGATGTCACGATGCAGG+TGG | + | chr4_4:62151998-62152017 | Msa0693250:CDS | 50.0% | |
| CCAAAGGGGATGATGCTTAC+TGG | - | chr4_4:62152037-62152056 | None:intergenic | 50.0% | |
| CCAGTAAGCATCATCCCCTT+TGG | + | chr4_4:62152034-62152053 | Msa0693250:intron | 50.0% | |
| GAATAGAGTTGACCCCTGCA+AGG | - | chr4_4:62152137-62152156 | None:intergenic | 50.0% | |
| CGTGTCACGTACTATGGCAA+AGG | + | chr4_4:62152389-62152408 | Msa0693250:CDS | 50.0% | |
| ! | GTAAAGAGTGCATGCCACGA+GGG | + | chr4_4:62152589-62152608 | Msa0693250:CDS | 50.0% |
| !! | GTGCACATTTGGTGCTCGTT+TGG | + | chr4_4:62152614-62152633 | Msa0693250:CDS | 50.0% |
| CAACTTGGCTCCTCCTCTTG+CGG | + | chr4_4:62149902-62149921 | Msa0693250:CDS | 55.0% | |
| TCTCCAATTTGCGCCACTCC+AGG | + | chr4_4:62149942-62149961 | Msa0693250:CDS | 55.0% | |
| CAACCTGGAGTGGCGCAAAT+TGG | - | chr4_4:62149948-62149967 | None:intergenic | 55.0% | |
| CAATTTGCGCCACTCCAGGT+TGG | + | chr4_4:62149946-62149965 | Msa0693250:intron | 55.0% | |
| AATCCCACCGTCCACTTGTG+GGG | - | chr4_4:62150220-62150239 | None:intergenic | 55.0% | |
| CAATCCCACCGTCCACTTGT+GGG | - | chr4_4:62150221-62150240 | None:intergenic | 55.0% | |
| !! | GTTGGTTCGGATCGGATCAG+TGG | + | chr4_4:62150871-62150890 | Msa0693250:intron | 55.0% |
| TCGGATCGGATCAGTGGCAT+TGG | + | chr4_4:62150877-62150896 | Msa0693250:intron | 55.0% | |
| !! | GGATCAGTGGCATTGGCCAA+TGG | + | chr4_4:62150884-62150903 | Msa0693250:intron | 55.0% |
| ! | GGTAAAGAGTGCATGCCACG+AGG | + | chr4_4:62152588-62152607 | Msa0693250:CDS | 55.0% |
| AGAAAGGCAGCCGCAAGAGG+AGG | - | chr4_4:62149915-62149934 | None:intergenic | 60.0% | |
| AGCAGAAAGGCAGCCGCAAG+AGG | - | chr4_4:62149918-62149937 | None:intergenic | 60.0% | |
| TTGAATGGGCCCCCCACAAG+TGG | + | chr4_4:62150206-62150225 | Msa0693250:intron | 60.0% | |
| ATCCCACCGTCCACTTGTGG+GGG | - | chr4_4:62150219-62150238 | None:intergenic | 60.0% | |
| CCAATCCCACCGTCCACTTG+TGG | - | chr4_4:62150222-62150241 | None:intergenic | 60.0% | |
| CCACAAGTGGACGGTGGGAT+TGG | + | chr4_4:62150219-62150238 | Msa0693250:intron | 60.0% | |
| GACGGTGGGATTGGACCCTT+CGG | + | chr4_4:62150228-62150247 | Msa0693250:intron | 60.0% | |
| CCAAATGTGCACTGCCCTCG+TGG | - | chr4_4:62152606-62152625 | None:intergenic | 60.0% | |
| CCACGAGGGCAGTGCACATT+TGG | + | chr4_4:62152603-62152622 | Msa0693250:CDS | 60.0% | |
| ATGGGCCCCCCACAAGTGGA+CGG | + | chr4_4:62150210-62150229 | Msa0693250:intron | 65.0% | |
| TCCCACCGTCCACTTGTGGG+GGG | - | chr4_4:62150218-62150237 | None:intergenic | 65.0% | |
| GCCCCCCACAAGTGGACGGT+GGG | + | chr4_4:62150214-62150233 | Msa0693250:intron | 70.0% | |
| GGCCCCCCACAAGTGGACGG+TGG | + | chr4_4:62150213-62150232 | Msa0693250:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 62149535 | 62152917 | 62149535 | ID=Msa0693250;Name=Msa0693250 |
| chr4_4 | mRNA | 62149535 | 62152917 | 62149535 | ID=Msa0693250-mRNA-1;Parent=Msa0693250;Name=Msa0693250-mRNA-1;_AED=0.19;_eAED=0.19;_QI=136|1|1|1|1|1|6|195|173 |
| chr4_4 | exon | 62149535 | 62149721 | 62149535 | ID=Msa0693250-mRNA-1:exon:17296;Parent=Msa0693250-mRNA-1 |
| chr4_4 | exon | 62149828 | 62149963 | 62149828 | ID=Msa0693250-mRNA-1:exon:17297;Parent=Msa0693250-mRNA-1 |
| chr4_4 | exon | 62151939 | 62152036 | 62151939 | ID=Msa0693250-mRNA-1:exon:17298;Parent=Msa0693250-mRNA-1 |
| chr4_4 | exon | 62152142 | 62152173 | 62152142 | ID=Msa0693250-mRNA-1:exon:17299;Parent=Msa0693250-mRNA-1 |
| chr4_4 | exon | 62152358 | 62152421 | 62152358 | ID=Msa0693250-mRNA-1:exon:17300;Parent=Msa0693250-mRNA-1 |
| chr4_4 | exon | 62152582 | 62152917 | 62152582 | ID=Msa0693250-mRNA-1:exon:17301;Parent=Msa0693250-mRNA-1 |
| chr4_4 | five_prime_UTR | 62149535 | 62149670 | 62149535 | ID=Msa0693250-mRNA-1:five_prime_utr;Parent=Msa0693250-mRNA-1 |
| chr4_4 | CDS | 62149671 | 62149721 | 62149671 | ID=Msa0693250-mRNA-1:cds;Parent=Msa0693250-mRNA-1 |
| chr4_4 | CDS | 62149828 | 62149963 | 62149828 | ID=Msa0693250-mRNA-1:cds;Parent=Msa0693250-mRNA-1 |
| chr4_4 | CDS | 62151939 | 62152036 | 62151939 | ID=Msa0693250-mRNA-1:cds;Parent=Msa0693250-mRNA-1 |
| chr4_4 | CDS | 62152142 | 62152173 | 62152142 | ID=Msa0693250-mRNA-1:cds;Parent=Msa0693250-mRNA-1 |
| chr4_4 | CDS | 62152358 | 62152421 | 62152358 | ID=Msa0693250-mRNA-1:cds;Parent=Msa0693250-mRNA-1 |
| chr4_4 | CDS | 62152582 | 62152722 | 62152582 | ID=Msa0693250-mRNA-1:cds;Parent=Msa0693250-mRNA-1 |
| chr4_4 | three_prime_UTR | 62152723 | 62152917 | 62152723 | ID=Msa0693250-mRNA-1:three_prime_utr;Parent=Msa0693250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
