AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465950 MtrunA17_Chr3g0121591 99.138 116 1 0 1 116 505 620 5.88e-75 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465950 AT3G59780.1 71.795 117 30 2 2 116 564 679 4.20e-47 160

Find 53 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAGTTAATTGGTGTATT+TGG 0.139173 tig0045757:-3089 Msa1465950:CDS
CAAATTGTACTGACTATTTC+TGG 0.157434 tig0045757:-1741 Msa1465950:three_prime_UTR
TTCATGGGCTGCTGGAAAAT+TGG 0.221878 tig0045757:-2165 Msa1465950:CDS
TTGCTTGCTCCTGTTAAAAT+TGG 0.250970 tig0045757:-2200 Msa1465950:CDS
AATGATCTAGATTAGCTATA+AGG 0.261080 tig0045757:+1554 Msa1465950:intergenic
TTGAGAGAAACTGTGGATTC+AGG 0.303521 tig0045757:+2020 Msa1465950:intergenic
GATAAGGTCGTTTGATGTTT+AGG 0.305180 tig0045757:-1683 Msa1465950:three_prime_UTR
TTTATTCAGGCACTACTTGC+GGG 0.319207 tig0045757:-3536 None:intergenic
GAGAAAACATTGCAGTTAAT+TGG 0.326196 tig0045757:-3098 Msa1465950:CDS
ACCTACATCACCTTCATCAT+TGG 0.364861 tig0045757:-2123 Msa1465950:CDS
CCCTTCACTATCAGATGGTT+GGG 0.374610 tig0045757:+2058 Msa1465950:intergenic
CGAAGAAACCCGCAGATATA+TGG 0.375217 tig0045757:+2852 Msa1465950:intergenic
TGGATTCAGGAGTCGGGTCT+TGG 0.390495 tig0045757:+2033 Msa1465950:intergenic
ATGATCTAGATTAGCTATAA+GGG 0.391562 tig0045757:+1555 Msa1465950:intergenic
GCACAATGTTTAGAAAAGAT+TGG 0.402580 tig0045757:+1877 Msa1465950:intergenic
ATAAACTATATTCTTCGATA+AGG 0.407028 tig0045757:-1699 Msa1465950:three_prime_UTR
CCTGTCAGCACATGACAATC+TGG 0.407370 tig0045757:+1974 Msa1465950:intergenic
AGATGGTTGGGATTCATGTT+TGG 0.419013 tig0045757:+2070 Msa1465950:intergenic
TCCTGTTAAAATTGGAGGTC+AGG 0.420799 tig0045757:-2192 Msa1465950:CDS
TACATTGATGATTGGGGTGA+AGG 0.425843 tig0045757:+1633 Msa1465950:intergenic
CATCATTGGATGTTCAGAAC+CGG 0.437481 tig0045757:-2109 Msa1465950:CDS
CTTGCTCCTGTTAAAATTGG+AGG 0.438553 tig0045757:-2197 Msa1465950:CDS
TCCCTTCACTATCAGATGGT+TGG 0.446609 tig0045757:+2057 Msa1465950:intergenic
TGGTGTATTTGGCCTCAGTC+TGG 0.451543 tig0045757:-3078 Msa1465950:intron
AATAATAATCATCTTTGTGT+TGG 0.465112 tig0045757:+1852 Msa1465950:intergenic
GGGTATTGACACAATGGATC+TGG 0.483077 tig0045757:+1575 Msa1465950:intergenic
GCTGGAAAATTGGAATCAAA+TGG 0.485788 tig0045757:-2155 Msa1465950:CDS
GCGGGGTCATATGCATTAGT+AGG 0.489225 tig0045757:-3518 Msa1465950:intron
AGTATACTCACCTCACATCT+TGG 0.494705 tig0045757:+2806 Msa1465950:intergenic
TGTTCAGAACCGGGTACTAC+AGG 0.505490 tig0045757:-2099 Msa1465950:CDS
TGGCTCCCTTCACTATCAGA+TGG 0.512937 tig0045757:+2053 Msa1465950:intergenic
CCAGATTGTCATGTGCTGAC+AGG 0.515767 tig0045757:-1974 Msa1465950:three_prime_UTR
AATTGGAATCAAATGGCATA+GGG 0.521233 tig0045757:-2148 Msa1465950:CDS
TGCGGGTTTCTTCGTATGAA+AGG 0.528929 tig0045757:-2843 Msa1465950:CDS
CAGATTGTCATGTGCTGACA+GGG 0.534350 tig0045757:-1973 Msa1465950:three_prime_UTR
GAAACTGTGGATTCAGGAGT+CGG 0.538062 tig0045757:+2026 Msa1465950:intergenic
TGGCAGCAGCCTGTAGTACC+CGG 0.538230 tig0045757:+2090 Msa1465950:intergenic
TGTGGCAATCTTGCAACTTG+TGG 0.541879 tig0045757:+1822 Msa1465950:intergenic
AAATTGGAATCAAATGGCAT+AGG 0.545577 tig0045757:-2149 Msa1465950:CDS
AAACTGTGGATTCAGGAGTC+GGG 0.550317 tig0045757:+2027 Msa1465950:intergenic
TTCTGAACATCCAATGATGA+AGG 0.553934 tig0045757:+2113 Msa1465950:intergenic
TCACCAGACCATATATCTGC+GGG 0.572007 tig0045757:-2860 Msa1465950:intron
ATCATTGGATGTTCAGAACC+GGG 0.574090 tig0045757:-2108 Msa1465950:CDS
GGGAAGAACAGAGATTTGTA+TGG 0.577500 tig0045757:-1953 Msa1465950:three_prime_UTR
TTATTCAGGCACTACTTGCG+GGG 0.589569 tig0045757:-3535 None:intergenic
TCCAATGATGAAGGTGATGT+AGG 0.591142 tig0045757:+2122 Msa1465950:intergenic
TGACACAATGGATCTGGCTG+TGG 0.595014 tig0045757:+1581 Msa1465950:intergenic
TCCCAACCATCTGATAGTGA+AGG 0.599318 tig0045757:-2059 Msa1465950:CDS
CCCAACCATCTGATAGTGAA+GGG 0.612867 tig0045757:-2058 Msa1465950:CDS
CTATAAGGGTATTGACACAA+TGG 0.647117 tig0045757:+1569 Msa1465950:intergenic
ATCACCAGACCATATATCTG+CGG 0.654757 tig0045757:-2861 Msa1465950:intron
AAGATTTGAACCAAGATGTG+AGG 0.656737 tig0045757:-2816 Msa1465950:intron
AAAATATACATACCAGACTG+AGG 0.706311 tig0045757:+3066 Msa1465940:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATAAATTCTTAGTTTAT+GGG + tig0045757:1584-1603 Msa1465950:intergenic 15.0%
!!! TATTCAGAATTGAATTTTTT+TGG - tig0045757:1598-1617 Msa1465950:three_prime_UTR 15.0%
!!! TATATTTTACATTGATGATT+GGG + tig0045757:3437-3456 Msa1465950:intergenic 15.0%
!!! TTATATTTTACATTGATGAT+TGG + tig0045757:3438-3457 Msa1465950:intergenic 15.0%
!! TGAATAAATTCTTAGTTTAT+GGG + tig0045757:1584-1603 Msa1465950:intergenic 15.0%
!!! TATTCAGAATTGAATTTTTT+TGG - tig0045757:1598-1617 Msa1465950:three_prime_UTR 15.0%
!!! TATATTTTACATTGATGATT+GGG + tig0045757:3437-3456 Msa1465950:intergenic 15.0%
!!! TTATATTTTACATTGATGAT+TGG + tig0045757:3438-3457 Msa1465950:intergenic 15.0%
!! CTGAATAAATTCTTAGTTTA+TGG + tig0045757:1585-1604 Msa1465950:intergenic 20.0%
!!! AATTTTTTATAGTGAAAACC+TGG - tig0045757:1858-1877 Msa1465950:three_prime_UTR 20.0%
!!! ACTGTTTCTTTAAAAGAATA+TGG - tig0045757:2043-2062 Msa1465950:CDS 20.0%
!! TTCATATATCAACTAATGTT+GGG - tig0045757:2066-2085 Msa1465950:CDS 20.0%
!! ATGCACATTCAAAAAATATA+AGG + tig0045757:2181-2200 Msa1465950:intergenic 20.0%
!!! AGTTAGTTTATCTTGTATTA+GGG + tig0045757:2627-2646 Msa1465950:intergenic 20.0%
!! AATAATAATCATCTTTGTGT+TGG + tig0045757:3211-3230 Msa1465950:intergenic 20.0%
!! ATAAACTATATTCTTCGATA+AGG - tig0045757:3361-3380 Msa1465950:intron 20.0%
!!! ATATTTTACATTGATGATTG+GGG + tig0045757:3436-3455 Msa1465950:intergenic 20.0%
!! CTGAATAAATTCTTAGTTTA+TGG + tig0045757:1585-1604 Msa1465950:intergenic 20.0%
!!! AATTTTTTATAGTGAAAACC+TGG - tig0045757:1858-1877 Msa1465950:three_prime_UTR 20.0%
!!! ACTGTTTCTTTAAAAGAATA+TGG - tig0045757:2043-2062 Msa1465950:CDS 20.0%
!! TTCATATATCAACTAATGTT+GGG - tig0045757:2066-2085 Msa1465950:CDS 20.0%
!! ATGCACATTCAAAAAATATA+AGG + tig0045757:2181-2200 Msa1465950:intergenic 20.0%
!!! AGTTAGTTTATCTTGTATTA+GGG + tig0045757:2627-2646 Msa1465950:intergenic 20.0%
!! AATAATAATCATCTTTGTGT+TGG + tig0045757:3211-3230 Msa1465950:intergenic 20.0%
!! ATAAACTATATTCTTCGATA+AGG - tig0045757:3361-3380 Msa1465950:intron 20.0%
!!! ATATTTTACATTGATGATTG+GGG + tig0045757:3436-3455 Msa1465950:intergenic 20.0%
!! TGGTATGTATATTTTCCATT+CGG - tig0045757:2002-2021 Msa1465950:exon 25.0%
! GTTCATATATCAACTAATGT+TGG - tig0045757:2065-2084 Msa1465950:CDS 25.0%
! TTCCCAGTAGATAAAATTAT+GGG + tig0045757:2106-2125 Msa1465950:intergenic 25.0%
! TTTCCCAGTAGATAAAATTA+TGG + tig0045757:2107-2126 Msa1465950:intergenic 25.0%
!! CTCATATTTATCCAGTTTTA+AGG - tig0045757:2129-2148 Msa1465950:CDS 25.0%
!!! TATACTTCATGATGGATATT+TGG - tig0045757:2271-2290 Msa1465950:intron 25.0%
! CTGAATACATATATGACTAT+GGG + tig0045757:2344-2363 Msa1465950:intergenic 25.0%
! ACTGAATACATATATGACTA+TGG + tig0045757:2345-2364 Msa1465950:intergenic 25.0%
! AGTCATCTTAATATAAGTCA+TGG - tig0045757:2362-2381 Msa1465950:intron 25.0%
! ATTTCTATGTTGTGAACTAT+TGG - tig0045757:2405-2424 Msa1465950:intron 25.0%
!! GAGTTAGTTTATCTTGTATT+AGG + tig0045757:2628-2647 Msa1465950:intergenic 25.0%
! ACAAGATAAACTAACTCTTA+AGG - tig0045757:2631-2650 Msa1465950:intron 25.0%
!! TTGAAAACATGTGTTTTTCT+AGG + tig0045757:2718-2737 Msa1465950:intergenic 25.0%
!!! ATTTTAATTGAGAGAAACTG+TGG + tig0045757:3050-3069 Msa1465950:intergenic 25.0%
!!! TTTCACTCTTACTATTTTGA+TGG + tig0045757:3265-3284 Msa1465950:intergenic 25.0%
!! ATGATCTAGATTAGCTATAA+GGG + tig0045757:3508-3527 Msa1465950:intergenic 25.0%
!! AATGATCTAGATTAGCTATA+AGG + tig0045757:3509-3528 Msa1465950:intergenic 25.0%
!! TGGTATGTATATTTTCCATT+CGG - tig0045757:2002-2021 Msa1465950:exon 25.0%
! GTTCATATATCAACTAATGT+TGG - tig0045757:2065-2084 Msa1465950:CDS 25.0%
! TTCCCAGTAGATAAAATTAT+GGG + tig0045757:2106-2125 Msa1465950:intergenic 25.0%
! TTTCCCAGTAGATAAAATTA+TGG + tig0045757:2107-2126 Msa1465950:intergenic 25.0%
!! CTCATATTTATCCAGTTTTA+AGG - tig0045757:2129-2148 Msa1465950:CDS 25.0%
!!! TATACTTCATGATGGATATT+TGG - tig0045757:2271-2290 Msa1465950:intron 25.0%
! CTGAATACATATATGACTAT+GGG + tig0045757:2344-2363 Msa1465950:intergenic 25.0%
! ACTGAATACATATATGACTA+TGG + tig0045757:2345-2364 Msa1465950:intergenic 25.0%
! AGTCATCTTAATATAAGTCA+TGG - tig0045757:2362-2381 Msa1465950:intron 25.0%
! ATTTCTATGTTGTGAACTAT+TGG - tig0045757:2405-2424 Msa1465950:intron 25.0%
!! GAGTTAGTTTATCTTGTATT+AGG + tig0045757:2628-2647 Msa1465950:intergenic 25.0%
! ACAAGATAAACTAACTCTTA+AGG - tig0045757:2631-2650 Msa1465950:intron 25.0%
!! TTGAAAACATGTGTTTTTCT+AGG + tig0045757:2718-2737 Msa1465950:intergenic 25.0%
!!! ATTTTAATTGAGAGAAACTG+TGG + tig0045757:3050-3069 Msa1465950:intergenic 25.0%
!!! TTTCACTCTTACTATTTTGA+TGG + tig0045757:3265-3284 Msa1465950:intergenic 25.0%
!! ATGATCTAGATTAGCTATAA+GGG + tig0045757:3508-3527 Msa1465950:intergenic 25.0%
!! AATGATCTAGATTAGCTATA+AGG + tig0045757:3509-3528 Msa1465950:intergenic 25.0%
AATGGTTAACAATAAAGTGG+GGG + tig0045757:1887-1906 Msa1465950:intergenic 30.0%
GAATGGTTAACAATAAAGTG+GGG + tig0045757:1888-1907 Msa1465950:intergenic 30.0%
CGAATGGTTAACAATAAAGT+GGG + tig0045757:1889-1908 Msa1465950:intergenic 30.0%
ACGAATGGTTAACAATAAAG+TGG + tig0045757:1890-1909 Msa1465950:intergenic 30.0%
AGGACAATCAAATAAACGAA+TGG + tig0045757:1905-1924 Msa1465950:intergenic 30.0%
AATCATTATTGTTGCAGAGT+GGG - tig0045757:1940-1959 Msa1465950:three_prime_UTR 30.0%
GAGAAAACATTGCAGTTAAT+TGG - tig0045757:1962-1981 Msa1465950:three_prime_UTR 30.0%
TTGCAGTTAATTGGTGTATT+TGG - tig0045757:1971-1990 Msa1465950:three_prime_UTR 30.0%
AAAATATACATACCAGACTG+AGG + tig0045757:1997-2016 Msa1465950:intergenic 30.0%
TAATGTTGGGAATAGCATAA+TGG - tig0045757:2079-2098 Msa1465950:CDS 30.0%
AATGTTGGGAATAGCATAAT+GGG - tig0045757:2080-2099 Msa1465950:CDS 30.0%
AATGTTACTGACCTTAAAAC+TGG + tig0045757:2143-2162 Msa1465950:intergenic 30.0%
!!! AGTTTTAAGGTCAGTAACAT+TGG - tig0045757:2142-2161 Msa1465950:CDS 30.0%
TAGCTACATGAAGTCTAAAA+TGG + tig0045757:2589-2608 Msa1465950:intergenic 30.0%
AGAGTAAAAATGCCAAGATA+GGG + tig0045757:2784-2803 Msa1465950:intergenic 30.0%
TAGAGTAAAAATGCCAAGAT+AGG + tig0045757:2785-2804 Msa1465950:intergenic 30.0%
AAATTGGAATCAAATGGCAT+AGG - tig0045757:2911-2930 Msa1465950:intron 30.0%
AATTGGAATCAAATGGCATA+GGG - tig0045757:2912-2931 Msa1465950:intron 30.0%
GCACAATGTTTAGAAAAGAT+TGG + tig0045757:3186-3205 Msa1465950:intergenic 30.0%
!!! TCTTACTATTTTGATGGTTG+TGG + tig0045757:3259-3278 Msa1465950:intergenic 30.0%
!! CAAATTGTACTGACTATTTC+TGG - tig0045757:3319-3338 Msa1465950:intron 30.0%
AATGGTTAACAATAAAGTGG+GGG + tig0045757:1887-1906 Msa1465950:intergenic 30.0%
GAATGGTTAACAATAAAGTG+GGG + tig0045757:1888-1907 Msa1465950:intergenic 30.0%
CGAATGGTTAACAATAAAGT+GGG + tig0045757:1889-1908 Msa1465950:intergenic 30.0%
ACGAATGGTTAACAATAAAG+TGG + tig0045757:1890-1909 Msa1465950:intergenic 30.0%
AGGACAATCAAATAAACGAA+TGG + tig0045757:1905-1924 Msa1465950:intergenic 30.0%
AATCATTATTGTTGCAGAGT+GGG - tig0045757:1940-1959 Msa1465950:three_prime_UTR 30.0%
GAGAAAACATTGCAGTTAAT+TGG - tig0045757:1962-1981 Msa1465950:three_prime_UTR 30.0%
TTGCAGTTAATTGGTGTATT+TGG - tig0045757:1971-1990 Msa1465950:three_prime_UTR 30.0%
AAAATATACATACCAGACTG+AGG + tig0045757:1997-2016 Msa1465950:intergenic 30.0%
TAATGTTGGGAATAGCATAA+TGG - tig0045757:2079-2098 Msa1465950:CDS 30.0%
AATGTTGGGAATAGCATAAT+GGG - tig0045757:2080-2099 Msa1465950:CDS 30.0%
AATGTTACTGACCTTAAAAC+TGG + tig0045757:2143-2162 Msa1465950:intergenic 30.0%
!!! AGTTTTAAGGTCAGTAACAT+TGG - tig0045757:2142-2161 Msa1465950:CDS 30.0%
TAGCTACATGAAGTCTAAAA+TGG + tig0045757:2589-2608 Msa1465950:intergenic 30.0%
AGAGTAAAAATGCCAAGATA+GGG + tig0045757:2784-2803 Msa1465950:intergenic 30.0%
TAGAGTAAAAATGCCAAGAT+AGG + tig0045757:2785-2804 Msa1465950:intergenic 30.0%
AAATTGGAATCAAATGGCAT+AGG - tig0045757:2911-2930 Msa1465950:intron 30.0%
AATTGGAATCAAATGGCATA+GGG - tig0045757:2912-2931 Msa1465950:intron 30.0%
GCACAATGTTTAGAAAAGAT+TGG + tig0045757:3186-3205 Msa1465950:intergenic 30.0%
!!! TCTTACTATTTTGATGGTTG+TGG + tig0045757:3259-3278 Msa1465950:intergenic 30.0%
!! CAAATTGTACTGACTATTTC+TGG - tig0045757:3319-3338 Msa1465950:intron 30.0%
TTGCAGAGGAACATACTAAA+GGG + tig0045757:1672-1691 Msa1465950:intergenic 35.0%
AGTTAGTTATATGCTTGCAG+AGG + tig0045757:1686-1705 Msa1465950:intergenic 35.0%
TGCCAGTTTATATGTGAAGT+TGG - tig0045757:1711-1730 Msa1465950:three_prime_UTR 35.0%
AGCCAACTTCACATATAAAC+TGG + tig0045757:1716-1735 Msa1465950:intergenic 35.0%
CAATCATTATTGTTGCAGAG+TGG - tig0045757:1939-1958 Msa1465950:three_prime_UTR 35.0%
! GGCCCATAATTTTATCTACT+GGG - tig0045757:2101-2120 Msa1465950:CDS 35.0%
AAGATTTGAACCAAGATGTG+AGG - tig0045757:2244-2263 Msa1465950:intron 35.0%
! CTATTGGCTATATAGCAGTA+TGG - tig0045757:2421-2440 Msa1465950:intron 35.0%
CAGCATTTCAAACGTGTAAA+AGG - tig0045757:2484-2503 Msa1465950:intron 35.0%
! TCTAAAATGGAAACTGCATG+TGG + tig0045757:2576-2595 Msa1465950:intergenic 35.0%
CAAGCAACAAAAACCTTTAC+AGG + tig0045757:2847-2866 Msa1465950:intergenic 35.0%
TTGCTTGCTCCTGTTAAAAT+TGG - tig0045757:2860-2879 Msa1465950:intron 35.0%
GCTGGAAAATTGGAATCAAA+TGG - tig0045757:2905-2924 Msa1465950:intron 35.0%
TTCTGAACATCCAATGATGA+AGG + tig0045757:2950-2969 Msa1465950:intergenic 35.0%
GATAAGGTCGTTTGATGTTT+AGG - tig0045757:3377-3396 Msa1465950:intron 35.0%
!! CTATAAGGGTATTGACACAA+TGG + tig0045757:3494-3513 Msa1465950:intergenic 35.0%
TTGCAGAGGAACATACTAAA+GGG + tig0045757:1672-1691 Msa1465950:intergenic 35.0%
AGTTAGTTATATGCTTGCAG+AGG + tig0045757:1686-1705 Msa1465950:intergenic 35.0%
TGCCAGTTTATATGTGAAGT+TGG - tig0045757:1711-1730 Msa1465950:three_prime_UTR 35.0%
AGCCAACTTCACATATAAAC+TGG + tig0045757:1716-1735 Msa1465950:intergenic 35.0%
CAATCATTATTGTTGCAGAG+TGG - tig0045757:1939-1958 Msa1465950:three_prime_UTR 35.0%
! GGCCCATAATTTTATCTACT+GGG - tig0045757:2101-2120 Msa1465950:CDS 35.0%
AAGATTTGAACCAAGATGTG+AGG - tig0045757:2244-2263 Msa1465950:intron 35.0%
! CTATTGGCTATATAGCAGTA+TGG - tig0045757:2421-2440 Msa1465950:intron 35.0%
CAGCATTTCAAACGTGTAAA+AGG - tig0045757:2484-2503 Msa1465950:intron 35.0%
! TCTAAAATGGAAACTGCATG+TGG + tig0045757:2576-2595 Msa1465950:intergenic 35.0%
CAAGCAACAAAAACCTTTAC+AGG + tig0045757:2847-2866 Msa1465950:intergenic 35.0%
TTGCTTGCTCCTGTTAAAAT+TGG - tig0045757:2860-2879 Msa1465950:intron 35.0%
GCTGGAAAATTGGAATCAAA+TGG - tig0045757:2905-2924 Msa1465950:intron 35.0%
TTCTGAACATCCAATGATGA+AGG + tig0045757:2950-2969 Msa1465950:intergenic 35.0%
GATAAGGTCGTTTGATGTTT+AGG - tig0045757:3377-3396 Msa1465950:intron 35.0%
!! CTATAAGGGTATTGACACAA+TGG + tig0045757:3494-3513 Msa1465950:intergenic 35.0%
! AAAGAGTGTAGCAGTTAGTC+CGG - tig0045757:1630-1649 Msa1465950:three_prime_UTR 40.0%
CTTGCAGAGGAACATACTAA+AGG + tig0045757:1673-1692 Msa1465950:intergenic 40.0%
CACTTGTGCATGATGTTACA+AGG + tig0045757:1824-1843 Msa1465950:intergenic 40.0%
TAACATCATGCACAAGTGAC+TGG - tig0045757:1826-1845 Msa1465950:three_prime_UTR 40.0%
! TAATTGAAGCACTTGCCGAA+TGG + tig0045757:2020-2039 Msa1465950:intergenic 40.0%
! GGGCCCATAATTTTATCTAC+TGG - tig0045757:2100-2119 Msa1465950:CDS 40.0%
ATCACCAGACCATATATCTG+CGG - tig0045757:2199-2218 Msa1465950:CDS 40.0%
AGTATACTCACCTCACATCT+TGG + tig0045757:2257-2276 Msa1465950:intergenic 40.0%
GAGGTGAGTATACTTCATGA+TGG - tig0045757:2263-2282 Msa1465950:intron 40.0%
TTGCTCATATCTGTCTATCG+AGG + tig0045757:2531-2550 Msa1465950:intergenic 40.0%
TGGAAACTGCATGTGGATTT+GGG + tig0045757:2569-2588 Msa1465950:intergenic 40.0%
ATGGAAACTGCATGTGGATT+TGG + tig0045757:2570-2589 Msa1465950:intergenic 40.0%
TGTCTTCTTCTGTCCTGTAA+AGG - tig0045757:2831-2850 Msa1465950:CDS 40.0%
CTTGCTCCTGTTAAAATTGG+AGG - tig0045757:2863-2882 Msa1465950:intron 40.0%
TCCTGTTAAAATTGGAGGTC+AGG - tig0045757:2868-2887 Msa1465950:intron 40.0%
ACCTACATCACCTTCATCAT+TGG - tig0045757:2937-2956 Msa1465950:intron 40.0%
TCCAATGATGAAGGTGATGT+AGG + tig0045757:2941-2960 Msa1465950:intergenic 40.0%
CATCATTGGATGTTCAGAAC+CGG - tig0045757:2951-2970 Msa1465950:intron 40.0%
ATCATTGGATGTTCAGAACC+GGG - tig0045757:2952-2971 Msa1465950:intron 40.0%
AGATGGTTGGGATTCATGTT+TGG + tig0045757:2993-3012 Msa1465950:intergenic 40.0%
TTGAGAGAAACTGTGGATTC+AGG + tig0045757:3043-3062 Msa1465950:intergenic 40.0%
GGGAAGAACAGAGATTTGTA+TGG - tig0045757:3107-3126 Msa1465950:intron 40.0%
! TACATTGATGATTGGGGTGA+AGG + tig0045757:3430-3449 Msa1465950:intergenic 40.0%
! AAAGAGTGTAGCAGTTAGTC+CGG - tig0045757:1630-1649 Msa1465950:three_prime_UTR 40.0%
CTTGCAGAGGAACATACTAA+AGG + tig0045757:1673-1692 Msa1465950:intergenic 40.0%
CACTTGTGCATGATGTTACA+AGG + tig0045757:1824-1843 Msa1465950:intergenic 40.0%
TAACATCATGCACAAGTGAC+TGG - tig0045757:1826-1845 Msa1465950:three_prime_UTR 40.0%
! TAATTGAAGCACTTGCCGAA+TGG + tig0045757:2020-2039 Msa1465950:intergenic 40.0%
! GGGCCCATAATTTTATCTAC+TGG - tig0045757:2100-2119 Msa1465950:CDS 40.0%
ATCACCAGACCATATATCTG+CGG - tig0045757:2199-2218 Msa1465950:CDS 40.0%
AGTATACTCACCTCACATCT+TGG + tig0045757:2257-2276 Msa1465950:intergenic 40.0%
GAGGTGAGTATACTTCATGA+TGG - tig0045757:2263-2282 Msa1465950:intron 40.0%
TTGCTCATATCTGTCTATCG+AGG + tig0045757:2531-2550 Msa1465950:intergenic 40.0%
TGGAAACTGCATGTGGATTT+GGG + tig0045757:2569-2588 Msa1465950:intergenic 40.0%
ATGGAAACTGCATGTGGATT+TGG + tig0045757:2570-2589 Msa1465950:intergenic 40.0%
TGTCTTCTTCTGTCCTGTAA+AGG - tig0045757:2831-2850 Msa1465950:CDS 40.0%
CTTGCTCCTGTTAAAATTGG+AGG - tig0045757:2863-2882 Msa1465950:intron 40.0%
TCCTGTTAAAATTGGAGGTC+AGG - tig0045757:2868-2887 Msa1465950:intron 40.0%
ACCTACATCACCTTCATCAT+TGG - tig0045757:2937-2956 Msa1465950:intron 40.0%
TCCAATGATGAAGGTGATGT+AGG + tig0045757:2941-2960 Msa1465950:intergenic 40.0%
CATCATTGGATGTTCAGAAC+CGG - tig0045757:2951-2970 Msa1465950:intron 40.0%
ATCATTGGATGTTCAGAACC+GGG - tig0045757:2952-2971 Msa1465950:intron 40.0%
AGATGGTTGGGATTCATGTT+TGG + tig0045757:2993-3012 Msa1465950:intergenic 40.0%
TTGAGAGAAACTGTGGATTC+AGG + tig0045757:3043-3062 Msa1465950:intergenic 40.0%
GGGAAGAACAGAGATTTGTA+TGG - tig0045757:3107-3126 Msa1465950:intron 40.0%
! TACATTGATGATTGGGGTGA+AGG + tig0045757:3430-3449 Msa1465950:intergenic 40.0%
! AAGAGTGTAGCAGTTAGTCC+GGG - tig0045757:1631-1650 Msa1465950:three_prime_UTR 45.0%
ACAATAAAGTGGGGGAAACC+AGG + tig0045757:1879-1898 Msa1465950:intergenic 45.0%
TGATTGCGCTTTGTCAGATC+AGG + tig0045757:1925-1944 Msa1465950:intergenic 45.0%
TCACCAGACCATATATCTGC+GGG - tig0045757:2200-2219 Msa1465950:CDS 45.0%
AAACCCGCAGATATATGGTC+TGG + tig0045757:2206-2225 Msa1465950:intergenic 45.0%
CGAAGAAACCCGCAGATATA+TGG + tig0045757:2211-2230 Msa1465950:intergenic 45.0%
TGCGGGTTTCTTCGTATGAA+AGG - tig0045757:2217-2236 Msa1465950:intron 45.0%
!! GCCTGACCTCCAATTTTAAC+AGG + tig0045757:2872-2891 Msa1465950:intergenic 45.0%
! TTGGAGGTCAGGCATTTTCA+TGG - tig0045757:2879-2898 Msa1465950:intron 45.0%
! TGGAGGTCAGGCATTTTCAT+GGG - tig0045757:2880-2899 Msa1465950:intron 45.0%
! TTCATGGGCTGCTGGAAAAT+TGG - tig0045757:2895-2914 Msa1465950:intron 45.0%
! TCCCAACCATCTGATAGTGA+AGG - tig0045757:3001-3020 Msa1465950:intron 45.0%
CCCTTCACTATCAGATGGTT+GGG + tig0045757:3005-3024 Msa1465950:intergenic 45.0%
! CCCAACCATCTGATAGTGAA+GGG - tig0045757:3002-3021 Msa1465950:intron 45.0%
TCCCTTCACTATCAGATGGT+TGG + tig0045757:3006-3025 Msa1465950:intergenic 45.0%
AAACTGTGGATTCAGGAGTC+GGG + tig0045757:3036-3055 Msa1465950:intergenic 45.0%
GAAACTGTGGATTCAGGAGT+CGG + tig0045757:3037-3056 Msa1465950:intergenic 45.0%
! CAGATTGTCATGTGCTGACA+GGG - tig0045757:3087-3106 Msa1465950:CDS 45.0%
TGTGGCAATCTTGCAACTTG+TGG + tig0045757:3241-3260 Msa1465950:intergenic 45.0%
!! GGGTATTGACACAATGGATC+TGG + tig0045757:3488-3507 Msa1465950:intergenic 45.0%
! AAGAGTGTAGCAGTTAGTCC+GGG - tig0045757:1631-1650 Msa1465950:three_prime_UTR 45.0%
ACAATAAAGTGGGGGAAACC+AGG + tig0045757:1879-1898 Msa1465950:intergenic 45.0%
TGATTGCGCTTTGTCAGATC+AGG + tig0045757:1925-1944 Msa1465950:intergenic 45.0%
TCACCAGACCATATATCTGC+GGG - tig0045757:2200-2219 Msa1465950:CDS 45.0%
AAACCCGCAGATATATGGTC+TGG + tig0045757:2206-2225 Msa1465950:intergenic 45.0%
CGAAGAAACCCGCAGATATA+TGG + tig0045757:2211-2230 Msa1465950:intergenic 45.0%
TGCGGGTTTCTTCGTATGAA+AGG - tig0045757:2217-2236 Msa1465950:intron 45.0%
!! GCCTGACCTCCAATTTTAAC+AGG + tig0045757:2872-2891 Msa1465950:intergenic 45.0%
! TTGGAGGTCAGGCATTTTCA+TGG - tig0045757:2879-2898 Msa1465950:intron 45.0%
! TGGAGGTCAGGCATTTTCAT+GGG - tig0045757:2880-2899 Msa1465950:intron 45.0%
! TTCATGGGCTGCTGGAAAAT+TGG - tig0045757:2895-2914 Msa1465950:intron 45.0%
! TCCCAACCATCTGATAGTGA+AGG - tig0045757:3001-3020 Msa1465950:intron 45.0%
CCCTTCACTATCAGATGGTT+GGG + tig0045757:3005-3024 Msa1465950:intergenic 45.0%
! CCCAACCATCTGATAGTGAA+GGG - tig0045757:3002-3021 Msa1465950:intron 45.0%
TCCCTTCACTATCAGATGGT+TGG + tig0045757:3006-3025 Msa1465950:intergenic 45.0%
AAACTGTGGATTCAGGAGTC+GGG + tig0045757:3036-3055 Msa1465950:intergenic 45.0%
GAAACTGTGGATTCAGGAGT+CGG + tig0045757:3037-3056 Msa1465950:intergenic 45.0%
! CAGATTGTCATGTGCTGACA+GGG - tig0045757:3087-3106 Msa1465950:CDS 45.0%
TGTGGCAATCTTGCAACTTG+TGG + tig0045757:3241-3260 Msa1465950:intergenic 45.0%
!! GGGTATTGACACAATGGATC+TGG + tig0045757:3488-3507 Msa1465950:intergenic 45.0%
GCGGGGTCATATGCATTAGT+AGG - tig0045757:1542-1561 Msa1465950:three_prime_UTR 50.0%
AGAGTGTAGCAGTTAGTCCG+GGG - tig0045757:1632-1651 Msa1465950:three_prime_UTR 50.0%
TGGTGTATTTGGCCTCAGTC+TGG - tig0045757:1982-2001 Msa1465950:three_prime_UTR 50.0%
CCAAGATAGGGTACACAAGC+TGG + tig0045757:2772-2791 Msa1465950:intergenic 50.0%
CCAGCTTGTGTACCCTATCT+TGG - tig0045757:2769-2788 Msa1465950:intron 50.0%
TGTTCAGAACCGGGTACTAC+AGG - tig0045757:2961-2980 Msa1465950:intron 50.0%
TGGCTCCCTTCACTATCAGA+TGG + tig0045757:3010-3029 Msa1465950:intergenic 50.0%
CCTGTCAGCACATGACAATC+TGG + tig0045757:3089-3108 Msa1465950:intergenic 50.0%
! CCAGATTGTCATGTGCTGAC+AGG - tig0045757:3086-3105 Msa1465950:CDS 50.0%
TGACACAATGGATCTGGCTG+TGG + tig0045757:3482-3501 Msa1465950:intergenic 50.0%
GCGGGGTCATATGCATTAGT+AGG - tig0045757:1542-1561 Msa1465950:three_prime_UTR 50.0%
AGAGTGTAGCAGTTAGTCCG+GGG - tig0045757:1632-1651 Msa1465950:three_prime_UTR 50.0%
TGGTGTATTTGGCCTCAGTC+TGG - tig0045757:1982-2001 Msa1465950:three_prime_UTR 50.0%
CCAAGATAGGGTACACAAGC+TGG + tig0045757:2772-2791 Msa1465950:intergenic 50.0%
CCAGCTTGTGTACCCTATCT+TGG - tig0045757:2769-2788 Msa1465950:intron 50.0%
TGTTCAGAACCGGGTACTAC+AGG - tig0045757:2961-2980 Msa1465950:intron 50.0%
TGGCTCCCTTCACTATCAGA+TGG + tig0045757:3010-3029 Msa1465950:intergenic 50.0%
CCTGTCAGCACATGACAATC+TGG + tig0045757:3089-3108 Msa1465950:intergenic 50.0%
! CCAGATTGTCATGTGCTGAC+AGG - tig0045757:3086-3105 Msa1465950:CDS 50.0%
TGACACAATGGATCTGGCTG+TGG + tig0045757:3482-3501 Msa1465950:intergenic 50.0%
!! CAGGCATTTTCATGGGCTGC+TGG - tig0045757:2887-2906 Msa1465950:intron 55.0%
TGGATTCAGGAGTCGGGTCT+TGG + tig0045757:3030-3049 Msa1465950:intergenic 55.0%
!! CAGGCATTTTCATGGGCTGC+TGG - tig0045757:2887-2906 Msa1465950:intron 55.0%
TGGATTCAGGAGTCGGGTCT+TGG + tig0045757:3030-3049 Msa1465950:intergenic 55.0%
GGGACAAAGTCTCACGACCC+CGG + tig0045757:1652-1671 Msa1465950:intergenic 60.0%
TGGCAGCAGCCTGTAGTACC+CGG + tig0045757:2973-2992 Msa1465950:intergenic 60.0%
GGGACAAAGTCTCACGACCC+CGG + tig0045757:1652-1671 Msa1465950:intergenic 60.0%
TGGCAGCAGCCTGTAGTACC+CGG + tig0045757:2973-2992 Msa1465950:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0045757 gene 1533 3549 1533 ID=Msa1465950;Name=Msa1465950
tig0045757 mRNA 1533 3549 1533 ID=Msa1465950-mRNA-1;Parent=Msa1465950;Name=Msa1465950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.66|0.5|0.75|1|1|4|483|116
tig0045757 exon 1533 2229 1533 ID=Msa1465950-mRNA-1:exon:24936;Parent=Msa1465950-mRNA-1
tig0045757 exon 2817 2875 2817 ID=Msa1465950-mRNA-1:exon:24935;Parent=Msa1465950-mRNA-1
tig0045757 exon 3079 3125 3079 ID=Msa1465950-mRNA-1:exon:24934;Parent=Msa1465950-mRNA-1
tig0045757 exon 3519 3549 3519 ID=Msa1465950-mRNA-1:exon:24933;Parent=Msa1465950-mRNA-1
tig0045757 CDS 3519 3549 3519 ID=Msa1465950-mRNA-1:cds;Parent=Msa1465950-mRNA-1
tig0045757 CDS 3079 3125 3079 ID=Msa1465950-mRNA-1:cds;Parent=Msa1465950-mRNA-1
tig0045757 CDS 2817 2875 2817 ID=Msa1465950-mRNA-1:cds;Parent=Msa1465950-mRNA-1
tig0045757 CDS 2016 2229 2016 ID=Msa1465950-mRNA-1:cds;Parent=Msa1465950-mRNA-1
tig0045757 three_prime_UTR 1533 2015 1533 ID=Msa1465950-mRNA-1:three_prime_utr;Parent=Msa1465950-mRNA-1
Gene Sequence

>Msa1465950

GCACTACTTGCGGGGTCATATGCATTAGTAGAGTGGGAGAAAACATTGCAGTTAATTGGTGTATTTGGCCTCAGTCTGACCATATATCTGCGGGTTTCTTCGTATGAAAGGTCAGAAGATTTGAACCAAGATGTGAGGTTTTTGTTGCTTGCTCCTGTTAAAATTGGAGGTCAGGCATTTTCATGGGCTGCTGGAAAATTGGAATCAAATGGCATAGGGTTACCTACATCACCTTCATCATTGGATGTTCAGAACCGGGTACTACAGGCTGCTGCCAAACATGAATCCCAACCATCTGATAGTGAAGGGAGCCAAGACCCGACTCCTGAATCCACAGTTTCTCTCAATTAA

Protein sequence

>Msa1465950

ALLAGSYALVEWEKTLQLIGVFGLSLTIYLRVSSYERSEDLNQDVRFLLLAPVKIGGQAFSWAAGKLESNGIGLPTSPSSLDVQNRVLQAAAKHESQPSDSEGSQDPTPESTVSLN*