AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1101480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101480 MtrunA17_Chr3g0120921 93.805 226 6 1 1 218 1 226 4.59e-157 433
Msa1101480 MtrunA17_Chr2g0289841 69.196 224 47 3 2 217 23 232 1.36e-102 296
Msa1101480 MtrunA17_Chr4g0075711 68.900 209 57 1 17 217 18 226 4.32e-98 284
Msa1101480 MtrunA17_Chr8g0377621 64.162 173 54 1 53 217 59 231 9.66e-80 238
Msa1101480 MtrunA17_Chr3g0122221 60.795 176 60 2 52 218 52 227 7.12e-72 218
Msa1101480 MtrunA17_Chr7g0261611 51.075 186 82 3 38 215 33 217 2.60e-61 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101480 AT3G07880.1 73.134 201 45 2 25 217 38 237 4.03e-105 303
Msa1101480 AT1G62450.1 63.380 213 67 4 15 217 11 222 1.74e-85 253
Msa1101480 AT1G12070.1 58.590 227 79 4 1 217 1 222 3.07e-82 244

Find 65 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAGCAATAACATTGTTTC+TGG 0.193009 7_3:+32279363 Msa1101480:CDS
ATTATCAGACCCCATCTTCT+TGG 0.244589 7_3:-32278478 None:intergenic
CATAGGACCTAGCTGTATTT+TGG 0.248019 7_3:-32278628 None:intergenic
GTAGAATTACTATTGCAAAT+TGG 0.255999 7_3:-32279977 None:intergenic
CCAGAGGGTGTGACTTCTTC+TGG 0.286287 7_3:-32279595 None:intergenic
TAGAATTACTATTGCAAATT+GGG 0.336926 7_3:-32279976 None:intergenic
AAATGGAAGGAGCAGCTTCT+TGG 0.366946 7_3:+32278838 Msa1101480:CDS
TGTTTGGAAGACTGCTGTTA+AGG 0.371169 7_3:+32279404 Msa1101480:CDS
GAGTTAACTACCTTGGATAT+TGG 0.372060 7_3:+32278442 Msa1101480:five_prime_UTR
GAGGAGGAAGAAGATGAATA+TGG 0.374764 7_3:+32278603 Msa1101480:CDS
GTTTGGAAGACTGCTGTTAA+GGG 0.387643 7_3:+32279405 Msa1101480:CDS
AATGGAAGGAGCAGCTTCTT+GGG 0.389589 7_3:+32278839 Msa1101480:CDS
TAAAATACACCAATACTGTT+TGG 0.391465 7_3:+32279388 Msa1101480:CDS
TATAGGACGATGAGAGTCTA+AGG 0.397474 7_3:+32278815 Msa1101480:intron
GTTCTTCCCATTCCTGAAGA+TGG 0.408171 7_3:+32279273 Msa1101480:CDS
CTTGAGTAAAATTATTCAAA+AGG 0.412061 7_3:-32280077 None:intergenic
CCAGAAGAAGTCACACCCTC+TGG 0.416770 7_3:+32279595 Msa1101480:CDS
AGGCTTGTAAAATTCACTTC+AGG 0.420910 7_3:-32279219 None:intergenic
GATAATGAAAACAAAGAAAC+AGG 0.423638 7_3:+32278495 Msa1101480:CDS
TCTGGCATCTCATGTGTGTA+AGG 0.427995 7_3:-32279577 None:intergenic
GTGTGTAAGGCTCTGGTTGA+GGG 0.432758 7_3:-32279564 None:intergenic
ATCTCATGTGTGTAAGGCTC+TGG 0.437007 7_3:-32279571 None:intergenic
ACGATGAGAGTCTAAGGAAA+TGG 0.439473 7_3:+32278821 Msa1101480:CDS
CTGTTGAAGTTCCAAGAAGA+TGG 0.447714 7_3:+32278467 Msa1101480:exon
TGAGCAATAACATTGTTTCT+GGG 0.463614 7_3:+32279364 Msa1101480:CDS
CAAAATACAGCTAGGTCCTA+TGG 0.489028 7_3:+32278629 Msa1101480:CDS
AGAACACCTTGAGAAAGATA+AGG 0.492651 7_3:+32278662 Msa1101480:CDS
AGAAGATTCACTCGTATGCC+TGG 0.493330 7_3:-32278568 None:intergenic
TGTGTGTAAGGCTCTGGTTG+AGG 0.496739 7_3:-32279565 None:intergenic
TTGTGGTTTACTCTTAAAGA+AGG 0.514851 7_3:+32279309 Msa1101480:CDS
CACCCTCTGGGATATTTGCT+AGG 0.518348 7_3:+32279608 Msa1101480:CDS
TGTTGATGAGTTAACTACCT+TGG 0.520655 7_3:+32278435 Msa1101480:five_prime_UTR
TCCTGAAGATGGAAAACCAC+AGG 0.525613 7_3:+32279284 Msa1101480:CDS
TGATGACAATAAATGTTACT+TGG 0.527867 7_3:+32279895 Msa1101480:CDS
AGCCTTTCTATAATCTCTCC+TGG 0.528718 7_3:+32279237 Msa1101480:CDS
TGTTGAAGTTCCAAGAAGAT+GGG 0.530353 7_3:+32278468 Msa1101480:exon
ATGGAAAACCACAGGGATTG+TGG 0.531586 7_3:+32279292 Msa1101480:CDS
ACCCTCTGGGATATTTGCTA+GGG 0.538296 7_3:+32279609 Msa1101480:CDS
TCACTCGTATGCCTGGTAAG+AGG 0.546518 7_3:-32278561 None:intergenic
ACAAAACCTTATCTTTCTCA+AGG 0.549448 7_3:-32278668 None:intergenic
AACATCATGAGCCTCTTACC+AGG 0.549984 7_3:+32278550 Msa1101480:CDS
ACAGGACAAACTAGTGAGGC+TGG 0.550189 7_3:+32278513 Msa1101480:CDS
AAGCTGAATTTCAGACGGTA+AGG 0.552089 7_3:-32279336 None:intergenic
ACAATATTCTGCAAGATCAA+AGG 0.554037 7_3:+32279633 Msa1101480:CDS
GGATTGGGCTTGATCATACA+TGG 0.554481 7_3:+32279946 Msa1101480:exon
GATAGCTCAAAAGAGATGCT+TGG 0.554702 7_3:+32279532 Msa1101480:CDS
AGCAGTCTTCCAAACAGTAT+TGG 0.558230 7_3:-32279397 None:intergenic
CAGAAGAAGTCACACCCTCT+GGG 0.582116 7_3:+32279596 Msa1101480:CDS
TACCAGGAGAGATTATAGAA+AGG 0.583890 7_3:-32279239 None:intergenic
TTCAACAGCTCCAATATCCA+AGG 0.597476 7_3:-32278452 None:intergenic
TATGGAGCCAAAATACAGCT+AGG 0.601518 7_3:+32278621 Msa1101480:CDS
TGTTCTTTAATAGTGACCAT+AGG 0.603238 7_3:-32278645 None:intergenic
CCCCTAGCAAATATCCCAGA+GGG 0.617735 7_3:-32279610 None:intergenic
TGAGAGTCTAAGGAAATGGA+AGG 0.619544 7_3:+32278825 Msa1101480:CDS
TTCTGTCTATGCAACTGAGG+AGG 0.624555 7_3:+32278587 Msa1101480:CDS
AGAACAATGTCATCTCTACC+AGG 0.626041 7_3:-32279255 None:intergenic
CAACAAAGCTGAATTTCAGA+CGG 0.649490 7_3:-32279341 None:intergenic
GTTGAAGTTCCAAGAAGATG+GGG 0.654525 7_3:+32278469 Msa1101480:exon
CCTGAAGATGGAAAACCACA+GGG 0.658329 7_3:+32279285 Msa1101480:CDS
CCCTCTGGGATATTTGCTAG+GGG 0.670702 7_3:+32279610 Msa1101480:CDS
AGAGTAAACCACAATCCCTG+TGG 0.676637 7_3:-32279300 None:intergenic
GGACAAACTAGTGAGGCTGG+TGG 0.680791 7_3:+32278516 Msa1101480:CDS
ATCTTCTGTCTATGCAACTG+AGG 0.702591 7_3:+32278584 Msa1101480:CDS
AGAAACAGGACAAACTAGTG+AGG 0.703043 7_3:+32278509 Msa1101480:CDS
TCCCCTAGCAAATATCCCAG+AGG 0.719574 7_3:-32279611 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTGTATAATTTTTTTGT+TGG + chr7_3:32279834-32279853 Msa1101480:intron 10.0%
!!! AAAAAAATATTGACTAAATA+TGG - chr7_3:32280002-32280021 None:intergenic 10.0%
!!! ATATTGTATAATTTTTTTGT+TGG + chr7_3:32279834-32279853 Msa1101480:intron 10.0%
!!! AAAAAAATATTGACTAAATA+TGG - chr7_3:32280002-32280021 None:intergenic 10.0%
!!! ATTGTTTTATGTTTTTTCAT+TGG + chr7_3:32278249-32278268 Msa1101480:five_prime_UTR 15.0%
!! GTAATTTAAGTAATTTACTT+AGG - chr7_3:32278739-32278758 None:intergenic 15.0%
!!! ATTGTTTTATGTTTTTTCAT+TGG + chr7_3:32278249-32278268 Msa1101480:five_prime_UTR 15.0%
!! GTAATTTAAGTAATTTACTT+AGG - chr7_3:32278739-32278758 None:intergenic 15.0%
!! AAAAAAATACTTGAAGAGAA+GGG - chr7_3:32278285-32278304 None:intergenic 20.0%
!! TAAAAAAATACTTGAAGAGA+AGG - chr7_3:32278286-32278305 None:intergenic 20.0%
!!! TTTTAGTACATAGATAGTTT+TGG + chr7_3:32278383-32278402 Msa1101480:five_prime_UTR 20.0%
!!! TTGTTCATTGTTTATGTTTT+TGG + chr7_3:32278778-32278797 Msa1101480:intron 20.0%
!!! TGTTCATTGTTTATGTTTTT+GGG + chr7_3:32278779-32278798 Msa1101480:intron 20.0%
!!! TGAACAATTTTCTTTTACAA+AGG - chr7_3:32278947-32278966 None:intergenic 20.0%
!!! TAAAACAAATGTTATTTCAG+TGG + chr7_3:32279510-32279529 Msa1101480:intron 20.0%
!! TGTTCCTCATAATTATTTAT+TGG + chr7_3:32279733-32279752 Msa1101480:intron 20.0%
!! GTTACCAATAAATAATTATG+AGG - chr7_3:32279740-32279759 None:intergenic 20.0%
!! TTGTTACACTTAATATGTAA+CGG - chr7_3:32279764-32279783 None:intergenic 20.0%
!!! TCAACTATACTTTTGATATT+AGG + chr7_3:32279921-32279940 Msa1101480:CDS 20.0%
!! TAGAATTACTATTGCAAATT+GGG - chr7_3:32279979-32279998 None:intergenic 20.0%
!! CTTGAGTAAAATTATTCAAA+AGG - chr7_3:32280080-32280099 None:intergenic 20.0%
!!! CTTTTGAATAATTTTACTCA+AGG + chr7_3:32280078-32280097 Msa1101480:three_prime_UTR 20.0%
!! AAAAAAATACTTGAAGAGAA+GGG - chr7_3:32278285-32278304 None:intergenic 20.0%
!! TAAAAAAATACTTGAAGAGA+AGG - chr7_3:32278286-32278305 None:intergenic 20.0%
!!! TTTTAGTACATAGATAGTTT+TGG + chr7_3:32278383-32278402 Msa1101480:five_prime_UTR 20.0%
!!! TTGTTCATTGTTTATGTTTT+TGG + chr7_3:32278778-32278797 Msa1101480:intron 20.0%
!!! TGTTCATTGTTTATGTTTTT+GGG + chr7_3:32278779-32278798 Msa1101480:intron 20.0%
!!! TGAACAATTTTCTTTTACAA+AGG - chr7_3:32278947-32278966 None:intergenic 20.0%
!!! TAAAACAAATGTTATTTCAG+TGG + chr7_3:32279510-32279529 Msa1101480:intron 20.0%
!! TGTTCCTCATAATTATTTAT+TGG + chr7_3:32279733-32279752 Msa1101480:intron 20.0%
!! GTTACCAATAAATAATTATG+AGG - chr7_3:32279740-32279759 None:intergenic 20.0%
!! TTGTTACACTTAATATGTAA+CGG - chr7_3:32279764-32279783 None:intergenic 20.0%
!!! TCAACTATACTTTTGATATT+AGG + chr7_3:32279921-32279940 Msa1101480:CDS 20.0%
!! TAGAATTACTATTGCAAATT+GGG - chr7_3:32279979-32279998 None:intergenic 20.0%
!! CTTGAGTAAAATTATTCAAA+AGG - chr7_3:32280080-32280099 None:intergenic 20.0%
!!! CTTTTGAATAATTTTACTCA+AGG + chr7_3:32280078-32280097 Msa1101480:three_prime_UTR 20.0%
!!! CTATAGAATTTGTTTTGTTG+AGG + chr7_3:32278352-32278371 Msa1101480:five_prime_UTR 25.0%
! GATAATGAAAACAAAGAAAC+AGG + chr7_3:32278495-32278514 Msa1101480:CDS 25.0%
!!! AGATAAGGTTTTGTTTCTTT+TGG + chr7_3:32278677-32278696 Msa1101480:intron 25.0%
! TAAAATACACCAATACTGTT+TGG + chr7_3:32279388-32279407 Msa1101480:CDS 25.0%
! GTGTTACAAAATTGGAAATT+TGG - chr7_3:32279465-32279484 None:intergenic 25.0%
! TGATGACAATAAATGTTACT+TGG + chr7_3:32279895-32279914 Msa1101480:CDS 25.0%
!! CTATACTTTTGATATTAGGA+AGG + chr7_3:32279925-32279944 Msa1101480:CDS 25.0%
!! TTTTGATATTAGGAAGGATT+GGG + chr7_3:32279931-32279950 Msa1101480:CDS 25.0%
! GTAGAATTACTATTGCAAAT+TGG - chr7_3:32279980-32279999 None:intergenic 25.0%
!! ATTTTACTCAAGGAAACAAT+AGG + chr7_3:32280088-32280107 Msa1101480:three_prime_UTR 25.0%
!!! CTATAGAATTTGTTTTGTTG+AGG + chr7_3:32278352-32278371 Msa1101480:five_prime_UTR 25.0%
! GATAATGAAAACAAAGAAAC+AGG + chr7_3:32278495-32278514 Msa1101480:CDS 25.0%
!!! AGATAAGGTTTTGTTTCTTT+TGG + chr7_3:32278677-32278696 Msa1101480:intron 25.0%
! TAAAATACACCAATACTGTT+TGG + chr7_3:32279388-32279407 Msa1101480:CDS 25.0%
! GTGTTACAAAATTGGAAATT+TGG - chr7_3:32279465-32279484 None:intergenic 25.0%
! TGATGACAATAAATGTTACT+TGG + chr7_3:32279895-32279914 Msa1101480:CDS 25.0%
!! CTATACTTTTGATATTAGGA+AGG + chr7_3:32279925-32279944 Msa1101480:CDS 25.0%
!! TTTTGATATTAGGAAGGATT+GGG + chr7_3:32279931-32279950 Msa1101480:CDS 25.0%
! GTAGAATTACTATTGCAAAT+TGG - chr7_3:32279980-32279999 None:intergenic 25.0%
TGTTCTTTAATAGTGACCAT+AGG - chr7_3:32278648-32278667 None:intergenic 30.0%
ACAAAACCTTATCTTTCTCA+AGG - chr7_3:32278671-32278690 None:intergenic 30.0%
! CATTGGAGGTATATAAATCA+CGG + chr7_3:32278879-32278898 Msa1101480:intron 30.0%
TTGTGGTTTACTCTTAAAGA+AGG + chr7_3:32279309-32279328 Msa1101480:CDS 30.0%
! TGAGCAATAACATTGTTTCT+GGG + chr7_3:32279364-32279383 Msa1101480:CDS 30.0%
AGGGATAAGTGTTACAAAAT+TGG - chr7_3:32279473-32279492 None:intergenic 30.0%
ACAATATTCTGCAAGATCAA+AGG + chr7_3:32279633-32279652 Msa1101480:CDS 30.0%
! TATTTTTCTTGTGCAGTTTC+TGG + chr7_3:32279871-32279890 Msa1101480:intron 30.0%
! CTTTTGATATTAGGAAGGAT+TGG + chr7_3:32279930-32279949 Msa1101480:CDS 30.0%
TGTTCTTTAATAGTGACCAT+AGG - chr7_3:32278648-32278667 None:intergenic 30.0%
ACAAAACCTTATCTTTCTCA+AGG - chr7_3:32278671-32278690 None:intergenic 30.0%
! CATTGGAGGTATATAAATCA+CGG + chr7_3:32278879-32278898 Msa1101480:intron 30.0%
TTGTGGTTTACTCTTAAAGA+AGG + chr7_3:32279309-32279328 Msa1101480:CDS 30.0%
! TGAGCAATAACATTGTTTCT+GGG + chr7_3:32279364-32279383 Msa1101480:CDS 30.0%
AGGGATAAGTGTTACAAAAT+TGG - chr7_3:32279473-32279492 None:intergenic 30.0%
ACAATATTCTGCAAGATCAA+AGG + chr7_3:32279633-32279652 Msa1101480:CDS 30.0%
! TATTTTTCTTGTGCAGTTTC+TGG + chr7_3:32279871-32279890 Msa1101480:intron 30.0%
! CTTTTGATATTAGGAAGGAT+TGG + chr7_3:32279930-32279949 Msa1101480:CDS 30.0%
! TGTTGATGAGTTAACTACCT+TGG + chr7_3:32278435-32278454 Msa1101480:five_prime_UTR 35.0%
GAGTTAACTACCTTGGATAT+TGG + chr7_3:32278442-32278461 Msa1101480:five_prime_UTR 35.0%
TGTTGAAGTTCCAAGAAGAT+GGG + chr7_3:32278468-32278487 Msa1101480:exon 35.0%
AGAACACCTTGAGAAAGATA+AGG + chr7_3:32278662-32278681 Msa1101480:CDS 35.0%
TGGGTTGTACGAATGAATAT+AGG + chr7_3:32278798-32278817 Msa1101480:intron 35.0%
AGGCTTGTAAAATTCACTTC+AGG - chr7_3:32279222-32279241 None:intergenic 35.0%
TACCAGGAGAGATTATAGAA+AGG - chr7_3:32279242-32279261 None:intergenic 35.0%
CAACAAAGCTGAATTTCAGA+CGG - chr7_3:32279344-32279363 None:intergenic 35.0%
GTGAGCAATAACATTGTTTC+TGG + chr7_3:32279363-32279382 Msa1101480:CDS 35.0%
! TGTTGATGAGTTAACTACCT+TGG + chr7_3:32278435-32278454 Msa1101480:five_prime_UTR 35.0%
GAGTTAACTACCTTGGATAT+TGG + chr7_3:32278442-32278461 Msa1101480:five_prime_UTR 35.0%
TGTTGAAGTTCCAAGAAGAT+GGG + chr7_3:32278468-32278487 Msa1101480:exon 35.0%
AGAACACCTTGAGAAAGATA+AGG + chr7_3:32278662-32278681 Msa1101480:CDS 35.0%
TGGGTTGTACGAATGAATAT+AGG + chr7_3:32278798-32278817 Msa1101480:intron 35.0%
AGGCTTGTAAAATTCACTTC+AGG - chr7_3:32279222-32279241 None:intergenic 35.0%
TACCAGGAGAGATTATAGAA+AGG - chr7_3:32279242-32279261 None:intergenic 35.0%
CAACAAAGCTGAATTTCAGA+CGG - chr7_3:32279344-32279363 None:intergenic 35.0%
GTGAGCAATAACATTGTTTC+TGG + chr7_3:32279363-32279382 Msa1101480:CDS 35.0%
TTCAACAGCTCCAATATCCA+AGG - chr7_3:32278455-32278474 None:intergenic 40.0%
CTGTTGAAGTTCCAAGAAGA+TGG + chr7_3:32278467-32278486 Msa1101480:exon 40.0%
GTTGAAGTTCCAAGAAGATG+GGG + chr7_3:32278469-32278488 Msa1101480:exon 40.0%
ATTATCAGACCCCATCTTCT+TGG - chr7_3:32278481-32278500 None:intergenic 40.0%
AGAAACAGGACAAACTAGTG+AGG + chr7_3:32278509-32278528 Msa1101480:CDS 40.0%
ATCTTCTGTCTATGCAACTG+AGG + chr7_3:32278584-32278603 Msa1101480:CDS 40.0%
GAGGAGGAAGAAGATGAATA+TGG + chr7_3:32278603-32278622 Msa1101480:CDS 40.0%
TATGGAGCCAAAATACAGCT+AGG + chr7_3:32278621-32278640 Msa1101480:CDS 40.0%
! CATAGGACCTAGCTGTATTT+TGG - chr7_3:32278631-32278650 None:intergenic 40.0%
CAAAATACAGCTAGGTCCTA+TGG + chr7_3:32278629-32278648 Msa1101480:CDS 40.0%
TATAGGACGATGAGAGTCTA+AGG + chr7_3:32278815-32278834 Msa1101480:intron 40.0%
ACGATGAGAGTCTAAGGAAA+TGG + chr7_3:32278821-32278840 Msa1101480:CDS 40.0%
TGAGAGTCTAAGGAAATGGA+AGG + chr7_3:32278825-32278844 Msa1101480:CDS 40.0%
!! AGTGTCGATGTCAACAACAT+TGG + chr7_3:32278862-32278881 Msa1101480:intron 40.0%
AGCCTTTCTATAATCTCTCC+TGG + chr7_3:32279237-32279256 Msa1101480:CDS 40.0%
AGAACAATGTCATCTCTACC+AGG - chr7_3:32279258-32279277 None:intergenic 40.0%
! GGTTTTCCATCTTCAGGAAT+GGG - chr7_3:32279282-32279301 None:intergenic 40.0%
! TGGTTTTCCATCTTCAGGAA+TGG - chr7_3:32279283-32279302 None:intergenic 40.0%
AAGCTGAATTTCAGACGGTA+AGG - chr7_3:32279339-32279358 None:intergenic 40.0%
AGCAGTCTTCCAAACAGTAT+TGG - chr7_3:32279400-32279419 None:intergenic 40.0%
TGTTTGGAAGACTGCTGTTA+AGG + chr7_3:32279404-32279423 Msa1101480:CDS 40.0%
GTTTGGAAGACTGCTGTTAA+GGG + chr7_3:32279405-32279424 Msa1101480:CDS 40.0%
GATAGCTCAAAAGAGATGCT+TGG + chr7_3:32279532-32279551 Msa1101480:CDS 40.0%
TTCAACAGCTCCAATATCCA+AGG - chr7_3:32278455-32278474 None:intergenic 40.0%
CTGTTGAAGTTCCAAGAAGA+TGG + chr7_3:32278467-32278486 Msa1101480:exon 40.0%
GTTGAAGTTCCAAGAAGATG+GGG + chr7_3:32278469-32278488 Msa1101480:exon 40.0%
ATTATCAGACCCCATCTTCT+TGG - chr7_3:32278481-32278500 None:intergenic 40.0%
AGAAACAGGACAAACTAGTG+AGG + chr7_3:32278509-32278528 Msa1101480:CDS 40.0%
ATCTTCTGTCTATGCAACTG+AGG + chr7_3:32278584-32278603 Msa1101480:CDS 40.0%
GAGGAGGAAGAAGATGAATA+TGG + chr7_3:32278603-32278622 Msa1101480:CDS 40.0%
TATGGAGCCAAAATACAGCT+AGG + chr7_3:32278621-32278640 Msa1101480:CDS 40.0%
! CATAGGACCTAGCTGTATTT+TGG - chr7_3:32278631-32278650 None:intergenic 40.0%
CAAAATACAGCTAGGTCCTA+TGG + chr7_3:32278629-32278648 Msa1101480:CDS 40.0%
TATAGGACGATGAGAGTCTA+AGG + chr7_3:32278815-32278834 Msa1101480:intron 40.0%
ACGATGAGAGTCTAAGGAAA+TGG + chr7_3:32278821-32278840 Msa1101480:CDS 40.0%
TGAGAGTCTAAGGAAATGGA+AGG + chr7_3:32278825-32278844 Msa1101480:CDS 40.0%
!! AGTGTCGATGTCAACAACAT+TGG + chr7_3:32278862-32278881 Msa1101480:intron 40.0%
AGCCTTTCTATAATCTCTCC+TGG + chr7_3:32279237-32279256 Msa1101480:CDS 40.0%
AGAACAATGTCATCTCTACC+AGG - chr7_3:32279258-32279277 None:intergenic 40.0%
! GGTTTTCCATCTTCAGGAAT+GGG - chr7_3:32279282-32279301 None:intergenic 40.0%
! TGGTTTTCCATCTTCAGGAA+TGG - chr7_3:32279283-32279302 None:intergenic 40.0%
AAGCTGAATTTCAGACGGTA+AGG - chr7_3:32279339-32279358 None:intergenic 40.0%
AGCAGTCTTCCAAACAGTAT+TGG - chr7_3:32279400-32279419 None:intergenic 40.0%
TGTTTGGAAGACTGCTGTTA+AGG + chr7_3:32279404-32279423 Msa1101480:CDS 40.0%
GTTTGGAAGACTGCTGTTAA+GGG + chr7_3:32279405-32279424 Msa1101480:CDS 40.0%
GATAGCTCAAAAGAGATGCT+TGG + chr7_3:32279532-32279551 Msa1101480:CDS 40.0%
AACATCATGAGCCTCTTACC+AGG + chr7_3:32278550-32278569 Msa1101480:CDS 45.0%
AGAAGATTCACTCGTATGCC+TGG - chr7_3:32278571-32278590 None:intergenic 45.0%
TTCTGTCTATGCAACTGAGG+AGG + chr7_3:32278587-32278606 Msa1101480:CDS 45.0%
AAATGGAAGGAGCAGCTTCT+TGG + chr7_3:32278838-32278857 Msa1101480:CDS 45.0%
AATGGAAGGAGCAGCTTCTT+GGG + chr7_3:32278839-32278858 Msa1101480:CDS 45.0%
GTCGATGTCAACAACATTGG+AGG + chr7_3:32278865-32278884 Msa1101480:intron 45.0%
!! ACAAGTGTGTCGATTGTTGC+AGG + chr7_3:32279100-32279119 Msa1101480:intron 45.0%
!! CAAGTGTGTCGATTGTTGCA+GGG + chr7_3:32279101-32279120 Msa1101480:intron 45.0%
GTTCTTCCCATTCCTGAAGA+TGG + chr7_3:32279273-32279292 Msa1101480:CDS 45.0%
TCCTGAAGATGGAAAACCAC+AGG + chr7_3:32279284-32279303 Msa1101480:CDS 45.0%
CCTGAAGATGGAAAACCACA+GGG + chr7_3:32279285-32279304 Msa1101480:CDS 45.0%
ATGGAAAACCACAGGGATTG+TGG + chr7_3:32279292-32279311 Msa1101480:CDS 45.0%
AGAGTAAACCACAATCCCTG+TGG - chr7_3:32279303-32279322 None:intergenic 45.0%
ATCTCATGTGTGTAAGGCTC+TGG - chr7_3:32279574-32279593 None:intergenic 45.0%
TCTGGCATCTCATGTGTGTA+AGG - chr7_3:32279580-32279599 None:intergenic 45.0%
!! ACCCTCTGGGATATTTGCTA+GGG + chr7_3:32279609-32279628 Msa1101480:CDS 45.0%
GGATTGGGCTTGATCATACA+TGG + chr7_3:32279946-32279965 Msa1101480:exon 45.0%
AACATCATGAGCCTCTTACC+AGG + chr7_3:32278550-32278569 Msa1101480:CDS 45.0%
AGAAGATTCACTCGTATGCC+TGG - chr7_3:32278571-32278590 None:intergenic 45.0%
TTCTGTCTATGCAACTGAGG+AGG + chr7_3:32278587-32278606 Msa1101480:CDS 45.0%
AAATGGAAGGAGCAGCTTCT+TGG + chr7_3:32278838-32278857 Msa1101480:CDS 45.0%
AATGGAAGGAGCAGCTTCTT+GGG + chr7_3:32278839-32278858 Msa1101480:CDS 45.0%
GTCGATGTCAACAACATTGG+AGG + chr7_3:32278865-32278884 Msa1101480:intron 45.0%
!! ACAAGTGTGTCGATTGTTGC+AGG + chr7_3:32279100-32279119 Msa1101480:intron 45.0%
!! CAAGTGTGTCGATTGTTGCA+GGG + chr7_3:32279101-32279120 Msa1101480:intron 45.0%
GTTCTTCCCATTCCTGAAGA+TGG + chr7_3:32279273-32279292 Msa1101480:CDS 45.0%
TCCTGAAGATGGAAAACCAC+AGG + chr7_3:32279284-32279303 Msa1101480:CDS 45.0%
CCTGAAGATGGAAAACCACA+GGG + chr7_3:32279285-32279304 Msa1101480:CDS 45.0%
ATGGAAAACCACAGGGATTG+TGG + chr7_3:32279292-32279311 Msa1101480:CDS 45.0%
AGAGTAAACCACAATCCCTG+TGG - chr7_3:32279303-32279322 None:intergenic 45.0%
ATCTCATGTGTGTAAGGCTC+TGG - chr7_3:32279574-32279593 None:intergenic 45.0%
TCTGGCATCTCATGTGTGTA+AGG - chr7_3:32279580-32279599 None:intergenic 45.0%
!! ACCCTCTGGGATATTTGCTA+GGG + chr7_3:32279609-32279628 Msa1101480:CDS 45.0%
GGATTGGGCTTGATCATACA+TGG + chr7_3:32279946-32279965 Msa1101480:exon 45.0%
!! TAATACAATTAAAATTAAAA+GGG - chr7_3:32279492-32279511 None:intergenic 5.0%
!! TTAATACAATTAAAATTAAA+AGG - chr7_3:32279493-32279512 None:intergenic 5.0%
!! TAATACAATTAAAATTAAAA+GGG - chr7_3:32279492-32279511 None:intergenic 5.0%
!! TTAATACAATTAAAATTAAA+AGG - chr7_3:32279493-32279512 None:intergenic 5.0%
ACAGGACAAACTAGTGAGGC+TGG + chr7_3:32278513-32278532 Msa1101480:CDS 50.0%
TCACTCGTATGCCTGGTAAG+AGG - chr7_3:32278564-32278583 None:intergenic 50.0%
! CCCTGTGGTTTTCCATCTTC+AGG - chr7_3:32279288-32279307 None:intergenic 50.0%
! GTGTGTAAGGCTCTGGTTGA+GGG - chr7_3:32279567-32279586 None:intergenic 50.0%
! TGTGTGTAAGGCTCTGGTTG+AGG - chr7_3:32279568-32279587 None:intergenic 50.0%
CAGAAGAAGTCACACCCTCT+GGG + chr7_3:32279596-32279615 Msa1101480:CDS 50.0%
!! CACCCTCTGGGATATTTGCT+AGG + chr7_3:32279608-32279627 Msa1101480:CDS 50.0%
CCCCTAGCAAATATCCCAGA+GGG - chr7_3:32279613-32279632 None:intergenic 50.0%
!! CCCTCTGGGATATTTGCTAG+GGG + chr7_3:32279610-32279629 Msa1101480:CDS 50.0%
TCCCCTAGCAAATATCCCAG+AGG - chr7_3:32279614-32279633 None:intergenic 50.0%
ACAGGACAAACTAGTGAGGC+TGG + chr7_3:32278513-32278532 Msa1101480:CDS 50.0%
TCACTCGTATGCCTGGTAAG+AGG - chr7_3:32278564-32278583 None:intergenic 50.0%
! CCCTGTGGTTTTCCATCTTC+AGG - chr7_3:32279288-32279307 None:intergenic 50.0%
! GTGTGTAAGGCTCTGGTTGA+GGG - chr7_3:32279567-32279586 None:intergenic 50.0%
! TGTGTGTAAGGCTCTGGTTG+AGG - chr7_3:32279568-32279587 None:intergenic 50.0%
CAGAAGAAGTCACACCCTCT+GGG + chr7_3:32279596-32279615 Msa1101480:CDS 50.0%
!! CACCCTCTGGGATATTTGCT+AGG + chr7_3:32279608-32279627 Msa1101480:CDS 50.0%
CCCCTAGCAAATATCCCAGA+GGG - chr7_3:32279613-32279632 None:intergenic 50.0%
!! CCCTCTGGGATATTTGCTAG+GGG + chr7_3:32279610-32279629 Msa1101480:CDS 50.0%
TCCCCTAGCAAATATCCCAG+AGG - chr7_3:32279614-32279633 None:intergenic 50.0%
GGACAAACTAGTGAGGCTGG+TGG + chr7_3:32278516-32278535 Msa1101480:CDS 55.0%
! CCAGAGGGTGTGACTTCTTC+TGG - chr7_3:32279598-32279617 None:intergenic 55.0%
CCAGAAGAAGTCACACCCTC+TGG + chr7_3:32279595-32279614 Msa1101480:CDS 55.0%
GGACAAACTAGTGAGGCTGG+TGG + chr7_3:32278516-32278535 Msa1101480:CDS 55.0%
! CCAGAGGGTGTGACTTCTTC+TGG - chr7_3:32279598-32279617 None:intergenic 55.0%
CCAGAAGAAGTCACACCCTC+TGG + chr7_3:32279595-32279614 Msa1101480:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 32278245 32280108 32278245 ID=Msa1101480;Name=Msa1101480
chr7_3 mRNA 32278245 32280108 32278245 ID=Msa1101480-mRNA-1;Parent=Msa1101480;Name=Msa1101480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=241|0.75|0.8|1|1|1|5|150|218
chr7_3 exon 32278245 32278683 32278245 ID=Msa1101480-mRNA-1:exon:6960;Parent=Msa1101480-mRNA-1
chr7_3 exon 32278820 32278862 32278820 ID=Msa1101480-mRNA-1:exon:6961;Parent=Msa1101480-mRNA-1
chr7_3 exon 32279208 32279426 32279208 ID=Msa1101480-mRNA-1:exon:6962;Parent=Msa1101480-mRNA-1
chr7_3 exon 32279530 32279654 32279530 ID=Msa1101480-mRNA-1:exon:6963;Parent=Msa1101480-mRNA-1
chr7_3 exon 32279887 32280108 32279887 ID=Msa1101480-mRNA-1:exon:6964;Parent=Msa1101480-mRNA-1
chr7_3 five_prime_UTR 32278245 32278485 32278245 ID=Msa1101480-mRNA-1:five_prime_utr;Parent=Msa1101480-mRNA-1
chr7_3 CDS 32278486 32278683 32278486 ID=Msa1101480-mRNA-1:cds;Parent=Msa1101480-mRNA-1
chr7_3 CDS 32278820 32278862 32278820 ID=Msa1101480-mRNA-1:cds;Parent=Msa1101480-mRNA-1
chr7_3 CDS 32279208 32279426 32279208 ID=Msa1101480-mRNA-1:cds;Parent=Msa1101480-mRNA-1
chr7_3 CDS 32279530 32279654 32279530 ID=Msa1101480-mRNA-1:cds;Parent=Msa1101480-mRNA-1
chr7_3 CDS 32279887 32279958 32279887 ID=Msa1101480-mRNA-1:cds;Parent=Msa1101480-mRNA-1
chr7_3 three_prime_UTR 32279959 32280108 32279959 ID=Msa1101480-mRNA-1:three_prime_utr;Parent=Msa1101480-mRNA-1
Gene Sequence

>Msa1101480

ATGGGGTCTGATAATGAAAACAAAGAAACAGGACAAACTAGTGAGGCTGGTGGAGAAAAAGAAGAACATCATGAGCCTCTTACCAGGCATACGAGTGAATCTTCTGTCTATGCAACTGAGGAGGAAGAAGATGAATATGGAGCCAAAATACAGCTAGGTCCTATGGTCACTATTAAAGAACACCTTGAGAAAGATAAGGACGATGAGAGTCTAAGGAAATGGAAGGAGCAGCTTCTTGGGAAAATTCTTGAACCTGAAGTGAATTTTACAAGCCTTTCTATAATCTCTCCTGGTAGAGATGACATTGTTCTTCCCATTCCTGAAGATGGAAAACCACAGGGATTGTGGTTTACTCTTAAAGAAGGTAGTCCTTACCGTCTGAAATTCAGCTTTGTTGTGAGCAATAACATTGTTTCTGGGTTAAAATACACCAATACTGTTTGGAAGACTGCTGTTAAGGTGGATAGCTCAAAAGAGATGCTTGGAACTTTCAGCCCTCAACCAGAGCCTTACACACATGAGATGCCAGAAGAAGTCACACCCTCTGGGATATTTGCTAGGGGACAATATTCTGCAAGATCAAAGTTTCTGGATGATGACAATAAATGTTACTTGGAGATCAACTATACTTTTGATATTAGGAAGGATTGGGCTTGA

Protein sequence

>Msa1101480

MGSDNENKETGQTSEAGGEKEEHHEPLTRHTSESSVYATEEEEDEYGAKIQLGPMVTIKEHLEKDKDDESLRKWKEQLLGKILEPEVNFTSLSIISPGRDDIVLPIPEDGKPQGLWFTLKEGSPYRLKFSFVVSNNIVSGLKYTNTVWKTAVKVDSSKEMLGTFSPQPEPYTHEMPEEVTPSGIFARGQYSARSKFLDDDNKCYLEINYTFDIRKDWA*