AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0584590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0584590 MtrunA17_Chr4g0021981 97.087 103 3 0 19 121 267 369 9.00e-73 221
Msa0584590 MtrunA17_Chr4g0022021 86.408 103 14 0 19 121 267 369 1.45e-64 200
Msa0584590 MtrunA17_Chr4g0011691 46.875 96 51 0 24 119 140 235 1.98e-28 103
Msa0584590 MtrunA17_Chr3g0121301 46.535 101 52 2 20 118 259 359 6.04e-26 99.4
Msa0584590 MtrunA17_Chr1g0188391 43.810 105 54 3 19 120 259 361 1.38e-23 93.2
Msa0584590 MtrunA17_Chr5g0432261 44.762 105 54 3 19 120 224 327 1.46e-23 92.8
Msa0584590 MtrunA17_Chr5g0432251 46.226 106 52 3 19 120 255 359 1.16e-22 90.5
Msa0584590 MtrunA17_Chr4g0046531 45.631 103 52 3 21 120 617 718 2.71e-22 90.5
Msa0584590 MtrunA17_Chr4g0046531 43.269 104 55 3 19 119 253 355 3.80e-21 87.4
Msa0584590 MtrunA17_Chr7g0276401 54.118 85 35 3 19 101 274 356 3.39e-22 89.4
Msa0584590 MtrunA17_Chr5g0432301 44.762 105 53 3 19 119 256 359 9.50e-22 88.2
Msa0584590 MtrunA17_Chr5g0432241 44.860 107 52 4 19 120 256 360 9.55e-22 88.2
Msa0584590 MtrunA17_Chr8g0345851 51.163 86 38 3 18 101 188 271 1.06e-21 87.0
Msa0584590 MtrunA17_Chr3g0128011 43.820 89 48 2 19 106 316 403 3.00e-21 87.4
Msa0584590 MtrunA17_Chr5g0432211 45.283 106 53 4 19 120 241 345 3.24e-21 86.7
Msa0584590 MtrunA17_Chr7g0223241 42.157 102 55 3 19 117 247 347 3.57e-21 86.7
Msa0584590 MtrunA17_Chr7g0276411 47.778 90 41 4 19 104 261 348 2.42e-19 81.6
Msa0584590 MtrunA17_Chr4g0046341 38.095 105 61 3 19 120 261 364 2.63e-19 81.6
Msa0584590 MtrunA17_Chr7g0223231 39.216 102 58 3 19 117 247 347 2.89e-19 81.3
Msa0584590 MtrunA17_Chr7g0219141 42.308 104 57 2 19 120 255 357 3.13e-19 81.3
Msa0584590 MtrunA17_Chr7g0219171 40.000 105 58 3 19 120 146 248 7.24e-19 79.0
Msa0584590 MtrunA17_Chr4g0046361 37.143 105 62 3 19 120 258 361 1.05e-18 79.7
Msa0584590 MtrunA17_Chr7g0219161 47.778 90 44 2 19 106 255 343 1.56e-18 79.3
Msa0584590 MtrunA17_Chr1g0188371 45.882 85 42 3 19 100 257 340 2.48e-18 79.0
Msa0584590 MtrunA17_Chr8g0367391 46.429 84 41 4 20 101 34 115 2.59e-18 75.1
Msa0584590 MtrunA17_Chr8g0367491 44.706 85 43 3 19 101 275 357 2.90e-18 78.6
Msa0584590 MtrunA17_Chr8g0367441 45.882 85 42 4 19 101 276 358 4.26e-18 78.2
Msa0584590 MtrunA17_Chr5g0448091 42.222 90 48 3 19 106 262 349 2.21e-17 76.3
Msa0584590 MtrunA17_Chr4g0040621 40.909 110 51 4 19 120 266 369 2.65e-17 75.9
Msa0584590 MtrunA17_Chr8g0367461 42.222 90 46 4 19 104 11 98 3.17e-16 68.9
Msa0584590 MtrunA17_Chr1g0163621 39.560 91 48 5 19 106 282 368 2.62e-15 70.5
Msa0584590 MtrunA17_Chr8g0367451 41.667 84 47 2 19 101 275 357 3.95e-15 70.1
Msa0584590 MtrunA17_Chr1g0163601 39.560 91 48 5 19 106 268 354 7.16e-15 69.3
Msa0584590 MtrunA17_Chr4g0014641 40.000 105 59 3 19 120 260 363 1.22e-14 68.6
Msa0584590 MtrunA17_Chr1g0163611 34.906 106 60 6 19 119 268 369 1.52e-14 68.2
Msa0584590 MtrunA17_Chr8g0367501 39.286 84 49 2 19 101 262 344 2.35e-14 67.8
Msa0584590 MtrunA17_Chr7g0218181 39.560 91 50 4 19 107 266 353 4.07e-14 67.0
Msa0584590 MtrunA17_Chr8g0367381 47.887 71 35 2 19 88 257 326 4.14e-14 67.0
Msa0584590 MtrunA17_Chr7g0218271 37.000 100 56 4 10 107 267 361 1.81e-13 65.5
Msa0584590 MtrunA17_Chr4g0014561 40.952 105 58 3 19 120 260 363 2.41e-13 65.1
Msa0584590 MtrunA17_Chr4g0014681 40.952 105 58 3 19 120 260 363 2.56e-13 64.7
Msa0584590 MtrunA17_Chr7g0218301 38.000 100 55 4 10 107 267 361 4.11e-13 64.3
Msa0584590 MtrunA17_Chr3g0085211 36.667 90 53 3 19 107 270 356 1.17e-12 63.2
Msa0584590 MtrunA17_Chr1g0200491 35.227 88 56 1 19 106 271 357 1.26e-12 62.8
Msa0584590 MtrunA17_Chr7g0218131 37.363 91 50 4 19 106 269 355 1.29e-12 62.8
Msa0584590 MtrunA17_Chr7g0218211 35.484 93 53 4 18 107 267 355 4.43e-12 61.2
Msa0584590 MtrunA17_Chr3g0085201 34.444 90 55 3 19 107 257 343 6.17e-12 60.8
Msa0584590 MtrunA17_Chr2g0307521 36.782 87 52 3 19 104 262 346 7.88e-12 60.5
Msa0584590 MtrunA17_Chr7g0218261 37.363 91 52 4 19 107 267 354 1.99e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0584590 AT4G35160.1 40.367 109 57 1 19 119 272 380 6.48e-25 97.4
Msa0584590 AT1G77520.1 46.535 101 51 2 19 117 279 378 6.60e-22 89.4
Msa0584590 AT1G62900.1 48.352 91 44 2 19 107 103 192 1.71e-21 85.1
Msa0584590 AT4G35150.1 35.780 109 62 1 19 119 215 323 7.66e-21 85.5
Msa0584590 AT1G63140.4 48.352 91 44 2 19 107 299 388 1.63e-20 85.5
Msa0584590 AT1G63140.2 48.352 91 44 2 19 107 279 368 1.69e-20 85.5
Msa0584590 AT1G51990.1 40.000 105 60 2 18 120 259 362 1.96e-20 85.1
Msa0584590 AT1G51990.2 40.000 105 60 2 18 120 259 362 2.35e-20 84.7
Msa0584590 AT5G54160.1 46.154 91 45 3 19 107 260 348 2.74e-20 84.7
Msa0584590 AT1G77530.1 44.554 101 53 2 19 117 279 378 2.98e-20 84.7
Msa0584590 AT1G76790.1 43.956 91 48 2 19 107 263 352 1.66e-18 79.7
Msa0584590 AT1G33030.1 41.111 90 49 3 19 106 249 336 3.59e-17 75.9
Msa0584590 AT1G21130.1 41.176 85 47 2 19 101 271 354 1.16e-16 74.7
Msa0584590 AT5G53810.1 43.956 91 48 2 19 107 276 365 1.56e-16 74.3
Msa0584590 AT1G21100.1 41.176 85 47 2 19 101 271 354 2.14e-16 73.9
Msa0584590 AT5G37170.3 37.624 101 60 2 19 117 84 183 4.79e-16 70.5
Msa0584590 AT1G21110.1 40.000 85 48 2 19 101 271 354 6.02e-16 72.8
Msa0584590 AT5G37170.2 37.624 101 60 2 19 117 132 231 1.01e-15 70.9
Msa0584590 AT5G37170.1 37.624 101 60 2 19 117 232 331 2.81e-15 70.5
Msa0584590 AT1G21120.1 40.000 85 48 2 19 101 271 354 4.31e-15 70.1
Msa0584590 AT1G21120.2 40.000 85 48 2 19 101 319 402 2.82e-14 68.2
Msa0584590 AT3G53140.1 35.644 101 62 3 19 117 257 356 2.90e-11 59.3

Find 185 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATATAAATTAAAGAAAT+TGG 0.130026 4_2:-4341927 Msa0584590:three_prime_UTR
ATGGGTGATACCATCAAATT+AGG 0.195305 4_2:+4342775 None:intergenic
AACTTTATGATTTGTTAAAA+AGG 0.201956 4_2:+4348889 None:intergenic
CTTCTGCCACATCATCATTT+TGG 0.219473 4_2:+4349081 None:intergenic
GTTACAAACCTCAAACTTAA+AGG 0.224806 4_2:-4348989 Msa0584590:five_prime_UTR
GTAAATGGTTCATTTCCTTC+TGG 0.225351 4_2:+4342455 None:intergenic
ACAAATGGCACTGCTTTCTT+AGG 0.235614 4_2:-4343045 Msa0584590:five_prime_UTR
AGTAAAGGGGATTGCTCTTT+AGG 0.258371 4_2:+4350025 None:intergenic
AATAATTTCACTACAATATA+GGG 0.265752 4_2:+4349596 None:intergenic
CAATACTTGGGTGCCATTAA+TGG 0.275774 4_2:-4349428 Msa0584590:five_prime_UTR
CAATAATTTCACTACAATAT+AGG 0.281093 4_2:+4349595 None:intergenic
CTATATTGTAGTGAAATTAT+TGG 0.282100 4_2:-4349594 Msa0584590:five_prime_UTR
TAATGGCACGGTGCCATTAA+TGG 0.294339 4_2:+4349415 None:intergenic
TTTCCTTTACCACTACAATT+TGG 0.295175 4_2:+4348757 None:intergenic
ATGCTTGGACAAATGAAATA+TGG 0.297996 4_2:-4343420 Msa0584590:five_prime_UTR
TTATCATGCACAATGGATTA+AGG 0.298175 4_2:+4349716 None:intergenic
TAGCACATGTGTGCCATATA+TGG 0.303651 4_2:+4349561 None:intergenic
CCAATCCAACACACCTGAAT+TGG 0.303915 4_2:-4348546 Msa0584590:five_prime_UTR
GTTTAACAAATTAAGTCTTT+TGG 0.305474 4_2:-4342899 Msa0584590:five_prime_UTR
GCTATCCCAGTGTCGGTAAA+TGG 0.307296 4_2:+4342440 None:intergenic
CTCACCACCTTCTGCCTTCA+AGG 0.309125 4_2:-4348435 Msa0584590:intron
GCCGATATTTATAGACCTTA+TGG 0.309821 4_2:-4343337 Msa0584590:five_prime_UTR
GCAACTATGTAGATTTGTTT+TGG 0.320400 4_2:+4349937 None:intergenic
GAGGCTAACTTATGTCCTAT+AGG 0.323851 4_2:-4349453 Msa0584590:five_prime_UTR
GCTTGACACGTGCATCAAAA+TGG 0.327202 4_2:-4343171 Msa0584590:five_prime_UTR
TAAATGGTTCATTTCCTTCT+GGG 0.333897 4_2:+4342456 None:intergenic
TTGTGTTGTGTGGCTTTACT+TGG 0.351030 4_2:-4342203 Msa0584590:three_prime_UTR
CCAATTCAGGTGTGTTGGAT+TGG 0.351528 4_2:+4348546 None:intergenic
ATATATAGTTAAAGTGTGTT+TGG 0.356196 4_2:+4349883 None:intergenic
TGGAGGTCTATGTCCATATA+TGG 0.356655 4_2:-4349574 Msa0584590:five_prime_UTR
CATGTTATCATGTGAGTAAA+GGG 0.359886 4_2:+4350011 None:intergenic
ATTCTGCACAATTTGAGTTA+AGG 0.365186 4_2:+4343304 None:intergenic
CTTAAAAGTAGAGTGGAATC+AGG 0.366781 4_2:+4343264 None:intergenic
GCAATTAGAGAGTTAATTTG+AGG 0.370896 4_2:+4348844 None:intergenic
ACCATGGGTCTTTAAGTTTG+TGG 0.374888 4_2:+4348921 None:intergenic
AGGCTAACTTATGTCCTATA+GGG 0.377721 4_2:-4349452 Msa0584590:five_prime_UTR
GGCAGAAGGTGGTGAGTGTT+TGG 0.386189 4_2:+4348442 None:intergenic
GCCATAAGGTCTATAAATAT+CGG 0.388845 4_2:+4343336 None:intergenic
ATATAACTTCTTTAAGTTTG+AGG 0.389465 4_2:-4349191 Msa0584590:five_prime_UTR
TTTCAACGGCCCTAATTTGA+TGG 0.391261 4_2:-4342785 Msa0584590:exon
GTTTGAGGTTTGTAATAGAT+TGG 0.395060 4_2:-4349227 Msa0584590:five_prime_UTR
TGTCCTATAGGGACAATACT+TGG 0.397138 4_2:-4349441 Msa0584590:five_prime_UTR
CATTACATCCTGGCCATTGA+TGG 0.398345 4_2:-4349397 Msa0584590:five_prime_UTR
AGTAGCAGGTTCAAATGAAA+AGG 0.402985 4_2:+4343096 None:intergenic
TATATAGTTAAAGTGTGTTT+GGG 0.405418 4_2:+4349884 None:intergenic
GGTTGATGTTGGCGGGGTAT+CGG 0.407322 4_2:-4342878 Msa0584590:five_prime_UTR
TGGCACCATGCCATTAGATC+AGG 0.407485 4_2:+4349328 None:intergenic
ACAATTTGAGTTAAGGATAG+TGG 0.413559 4_2:+4343311 None:intergenic
ACATAAGTCCTTTAAGTTTG+AGG 0.415697 4_2:+4348981 None:intergenic
AGGGAAGAAAGCCTTTGTTT+TGG 0.416945 4_2:+4348521 None:intergenic
GTGTGTGTGATGTGTGTGTT+GGG 0.422728 4_2:+4349372 None:intergenic
AAGAAAGAACTGAAGAGAAC+TGG 0.424963 4_2:-4342379 Msa0584590:CDS
ATTTGAGGTAAATCTAAAGT+TGG 0.426459 4_2:+4348859 None:intergenic
TGTGTCGGGGCTGTTATTGC+TGG 0.428038 4_2:-4342933 Msa0584590:five_prime_UTR
CATCTTCCATGAATTTAGAC+TGG 0.429361 4_2:+4342275 None:intergenic
ATAATTATTTAATCACCTAC+TGG 0.431910 4_2:+4349790 None:intergenic
ATGGAAGATGACGAGTTTGT+TGG 0.440293 4_2:-4342262 Msa0584590:three_prime_UTR
GTTTGAGGTTTGTAACAGAT+TGG 0.441744 4_2:+4348996 None:intergenic
TGCACCGCTAGAATTGTGTC+GGG 0.442768 4_2:-4342947 Msa0584590:five_prime_UTR
TTTGCAAGTTGCAAATTCAA+TGG 0.445615 4_2:+4348569 None:intergenic
GCATTCCCAGTCTAAATTCA+TGG 0.449506 4_2:-4342281 Msa0584590:exon
TTAGCATAGTGCATAACTAT+AGG 0.451127 4_2:+4349298 None:intergenic
CAATATAAATTAAAGAAATT+GGG 0.452679 4_2:-4341926 Msa0584590:three_prime_UTR
CACTGCTTTCTTAGGTGTCA+TGG 0.453607 4_2:-4343037 Msa0584590:five_prime_UTR
ATGATTCAAGTGAGGGGTGA+GGG 0.456632 4_2:+4348502 None:intergenic
ATAAAAGAAGGCACAACAAA+TGG 0.457011 4_2:-4343060 Msa0584590:five_prime_UTR
TGTGTGTGTGATGTGTGTGT+TGG 0.462299 4_2:+4349371 None:intergenic
CATGAACAATTTGAAATGAC+GGG 0.462928 4_2:-4343013 Msa0584590:five_prime_UTR
CTAACGTGTCAATATTTAAA+CGG 0.464160 4_2:-4349541 Msa0584590:five_prime_UTR
GAGGATAAGCTCTAACAATC+TGG 0.466491 4_2:+4342844 None:intergenic
TATTAGTGAATTATAAAAGA+AGG 0.466497 4_2:-4343072 Msa0584590:five_prime_UTR
TTCAAATTATGATACACAAA+AGG 0.466985 4_2:+4342155 None:intergenic
GAACCAAATTGTAGTGGTAA+AGG 0.471280 4_2:-4348760 Msa0584590:five_prime_UTR
TCTATATCTACGCACCTTGA+AGG 0.472047 4_2:+4348421 None:intergenic
TAATTCACTAATAAAGTAGC+AGG 0.473221 4_2:+4343082 None:intergenic
AAGGCAATACCAGAGAAAAC+AGG 0.476074 4_2:-4342509 Msa0584590:CDS
AATGTGTGGCCCTGATCTAA+TGG 0.478293 4_2:-4349338 Msa0584590:five_prime_UTR
AATGGTTAATAAAGACGATA+AGG 0.478588 4_2:+4348587 None:intergenic
TTTCACTACAATATAGGGAT+TGG 0.479860 4_2:+4349601 None:intergenic
AATTAAAGAAATTGGGTCAT+GGG 0.480796 4_2:-4341919 Msa0584590:three_prime_UTR
TGGTTCCAATTCAGGTGTGT+TGG 0.483603 4_2:+4348541 None:intergenic
GGCAGTGGATTCTTCATGAC+TGG 0.484877 4_2:-4342571 Msa0584590:intron
TAACTTTGATTTGCCTCATG+TGG 0.490029 4_2:-4342808 Msa0584590:five_prime_UTR
ACATGTTATCATGTGAGTAA+AGG 0.493009 4_2:+4350010 None:intergenic
TTGCACCGCTAGAATTGTGT+CGG 0.495621 4_2:-4342948 Msa0584590:five_prime_UTR
CATCAATGGCCAGGATGTAA+TGG 0.498439 4_2:+4349398 None:intergenic
AAACATGTCTCCTCCAACAT+GGG 0.498630 4_2:+4342757 None:intergenic
CACCCAAGTATTGTCCCTAT+AGG 0.498912 4_2:+4349438 None:intergenic
TGTTATTGCTGGATACAAGA+TGG 0.504496 4_2:-4342922 Msa0584590:five_prime_UTR
GAGGAAAAGGGAAGAAAATG+TGG 0.508007 4_2:+4341980 None:intergenic
TGTGTGTTGGGTGCCATCAA+TGG 0.513265 4_2:+4349384 None:intergenic
GTTATTGCTGGATACAAGAT+GGG 0.515129 4_2:-4342921 Msa0584590:five_prime_UTR
ATAGTGCATAACTATAGGAC+GGG 0.518113 4_2:+4349303 None:intergenic
GATATTGAAGAATTGTAGAA+AGG 0.519416 4_2:-4342528 Msa0584590:CDS
AATGAACCATTTACCGACAC+TGG 0.520366 4_2:-4342446 Msa0584590:CDS
TGACTTGTTCAACCAAGGTA+TGG 0.521535 4_2:-4342972 Msa0584590:five_prime_UTR
TAAGGATAGTGGTTGCCATA+AGG 0.522812 4_2:+4343322 None:intergenic
AGCTAGCTATGATTCATGCA+TGG 0.523703 4_2:-4342108 Msa0584590:three_prime_UTR
AAATTAAAGAAATTGGGTCA+TGG 0.525972 4_2:-4341920 Msa0584590:three_prime_UTR
AGTGCTGATGCTATTTATGA+AGG 0.526975 4_2:-4342722 Msa0584590:intron
GATGATTCAAGTGAGGGGTG+AGG 0.529202 4_2:+4348501 None:intergenic
GATGGTATCACCCATGTTGG+AGG 0.530918 4_2:-4342767 Msa0584590:CDS
TGGGTGATACCATCAAATTA+GGG 0.531718 4_2:+4342776 None:intergenic
GATCATTGTGGATCATGTAT+TGG 0.533084 4_2:-4342480 Msa0584590:CDS
ACAATTTGAAATGACGGGGT+TGG 0.533144 4_2:-4343008 Msa0584590:five_prime_UTR
TCTTCAATATCTTTATGCAA+TGG 0.534210 4_2:+4342540 None:intergenic
CAAACATGTCTCCTCCAACA+TGG 0.536952 4_2:+4342756 None:intergenic
AAATACTTATTCAACGAGAC+AGG 0.536963 4_2:-4342356 Msa0584590:CDS
CATGAATCATAGCTAGCTCT+AGG 0.538035 4_2:+4342113 None:intergenic
TTTGCCTCATGTGGTTTCAA+CGG 0.539222 4_2:-4342799 Msa0584590:five_prime_UTR
GTTGGGTGCCATCAATGGCC+AGG 0.539441 4_2:+4349389 None:intergenic
TTTGATGGTATCACCCATGT+TGG 0.540147 4_2:-4342770 Msa0584590:exon
GCTAGCTATGATTCATGCAT+GGG 0.540353 4_2:-4342107 Msa0584590:three_prime_UTR
CAATATAGGGATTGGTATGT+CGG 0.540408 4_2:+4349609 None:intergenic
TGATCTTGTTTATTTAGCAA+AGG 0.541047 4_2:-4349275 Msa0584590:five_prime_UTR
TATTGTAGTGAAATTATTGG+AGG 0.541537 4_2:-4349591 Msa0584590:five_prime_UTR
CAAGCCGTAGAGAATTTCCC+CGG 0.542265 4_2:+4343189 None:intergenic
GGAAGAAGAAGAATCATGCT+TGG 0.549012 4_2:-4343435 Msa0584590:five_prime_UTR
GTAGCAGGTTCAAATGAAAA+GGG 0.549842 4_2:+4343097 None:intergenic
GGCACCGTGCCATTACATCC+TGG 0.551691 4_2:-4349407 Msa0584590:five_prime_UTR
TCATGAACAATTTGAAATGA+CGG 0.554113 4_2:-4343014 Msa0584590:five_prime_UTR
GAATGAGATGATTCAAGTGA+GGG 0.554224 4_2:+4348495 None:intergenic
TTCGTATGTGTTGTGTTGTG+TGG 0.557358 4_2:-4342213 Msa0584590:three_prime_UTR
TGATGTTGGCGGGGTATCGG+AGG 0.558649 4_2:-4342875 Msa0584590:five_prime_UTR
AAAATTTATACTCTTCCAGT+AGG 0.559078 4_2:-4349805 Msa0584590:five_prime_UTR
TTATTGACCAGGGTGTGAGC+AGG 0.560592 4_2:-4343456 Msa0584590:intron
CTGCTATCTGATCTGCTGAT+GGG 0.562055 4_2:+4342071 None:intergenic
TTAAAAGTAGAGTGGAATCA+GGG 0.568514 4_2:+4343265 None:intergenic
AGAATGAGATGATTCAAGTG+AGG 0.570482 4_2:+4348494 None:intergenic
ATCTTCCATGAATTTAGACT+GGG 0.572279 4_2:+4342276 None:intergenic
TAGCGGTGCAAACCATACCT+TGG 0.586631 4_2:+4342960 None:intergenic
TACAAGACACAAAATGACAT+TGG 0.587842 4_2:-4343144 Msa0584590:five_prime_UTR
TCTGCTATCTGATCTGCTGA+TGG 0.591530 4_2:+4342070 None:intergenic
GTCCTATAGGGACAATACTT+GGG 0.593401 4_2:-4349440 Msa0584590:five_prime_UTR
GGGAAGATGGACATGGACAA+TGG 0.597707 4_2:+4349966 None:intergenic
TGTGATTGATGAGTGTGTGG+TGG 0.601715 4_2:+4348709 None:intergenic
CAAAATGATGATGTGGCAGA+AGG 0.602463 4_2:-4349080 Msa0584590:five_prime_UTR
GTCAAATGCTATCCCAGTGT+CGG 0.602762 4_2:+4342433 None:intergenic
GTTCTCAGGGAAGATGGACA+TGG 0.604205 4_2:+4349959 None:intergenic
CTACGCACCTTGAAGGCAGA+AGG 0.604702 4_2:+4348428 None:intergenic
AAAAGGTTAAGTTACACCAT+GGG 0.606738 4_2:+4348906 None:intergenic
TGCTCTGCCATGCATCATTG+AGG 0.607068 4_2:-4342303 Msa0584590:CDS
TCATAAATAGCATCAGCACT+AGG 0.608084 4_2:+4342725 None:intergenic
CATAGTGCATAACTATAGGA+CGG 0.608130 4_2:+4349302 None:intergenic
ATGTTGCTTGCTCACAACGC+TGG 0.609694 4_2:-4342407 Msa0584590:CDS
ATGAACCATTTACCGACACT+GGG 0.609768 4_2:-4342445 Msa0584590:CDS
AAGTTAATAGCTTGAATGTG+AGG 0.610156 4_2:+4342825 None:intergenic
GGCACCATGCCATTAGATCA+GGG 0.611591 4_2:+4349329 None:intergenic
AACAGGAAAGGTGATCATTG+TGG 0.615274 4_2:-4342492 Msa0584590:CDS
CACACACTTGGGGCAATGTG+TGG 0.618855 4_2:-4349352 Msa0584590:five_prime_UTR
GAAACCGGGGAAATTCTCTA+CGG 0.620852 4_2:-4343193 Msa0584590:five_prime_UTR
CGCACCTTGAAGGCAGAAGG+TGG 0.621755 4_2:+4348431 None:intergenic
TACAATGACTTGTTCAACCA+AGG 0.624846 4_2:-4342977 Msa0584590:five_prime_UTR
ACCACAAACTTAAAGACCCA+TGG 0.625835 4_2:-4348922 Msa0584590:five_prime_UTR
TCATTACCTTAAAAGTAGAG+TGG 0.626614 4_2:+4343257 None:intergenic
AGCTATGATTCATGCATGGG+GGG 0.627479 4_2:-4342104 Msa0584590:three_prime_UTR
TTCTGCACTACAATGTAGTG+TGG 0.630656 4_2:+4348780 None:intergenic
AAGTAGAGTGGAATCAGGGA+AGG 0.635668 4_2:+4343269 None:intergenic
TATTACTTCAATAATGCACA+TGG 0.640664 4_2:-4348680 Msa0584590:five_prime_UTR
TGTTAACCAAAATGATGATG+TGG 0.642089 4_2:-4349087 Msa0584590:five_prime_UTR
GTAAGATTTATCATGCACAA+TGG 0.646286 4_2:+4349709 None:intergenic
CTAGCTATGATTCATGCATG+GGG 0.649012 4_2:-4342106 Msa0584590:three_prime_UTR
CTGAATTGGAACCAAAACAA+AGG 0.651322 4_2:-4348532 Msa0584590:five_prime_UTR
GATCATGTATTGGACCCAGA+AGG 0.652817 4_2:-4342470 Msa0584590:CDS
AATGAGATGATTCAAGTGAG+GGG 0.652842 4_2:+4348496 None:intergenic
GTATTCTCTAGCAACAACAT+TGG 0.654040 4_2:+4343119 None:intergenic
GTGGCCCTGATCTAATGGCA+TGG 0.654682 4_2:-4349333 Msa0584590:five_prime_UTR
AGTGCAGAACCAAATTGTAG+TGG 0.658078 4_2:-4348766 Msa0584590:five_prime_UTR
GGGAATGCCTCAATGATGCA+TGG 0.663145 4_2:+4342296 None:intergenic
ATAAGGTGTGATGAAATATG+TGG 0.663189 4_2:+4348604 None:intergenic
TAGTGCATAACTATAGGACG+GGG 0.665849 4_2:+4349304 None:intergenic
ATGTTATCATGTGAGTAAAG+GGG 0.667964 4_2:+4350012 None:intergenic
ATAAGTTATGACAAACCTTG+TGG 0.668198 4_2:+4349497 None:intergenic
AAATTGAAGATGTGACCACA+AGG 0.668325 4_2:-4349512 Msa0584590:five_prime_UTR
AATACCAGAGAAAACAGGAA+AGG 0.671132 4_2:-4342504 Msa0584590:CDS
ATGGCCAGGATGTAATGGCA+CGG 0.674657 4_2:+4349403 None:intergenic
ATGAACAATTTGAAATGACG+GGG 0.676832 4_2:-4343012 Msa0584590:five_prime_UTR
TAATGTGATTGATGAGTGTG+TGG 0.677733 4_2:+4348706 None:intergenic
GCACCGCTAGAATTGTGTCG+GGG 0.677798 4_2:-4342946 Msa0584590:five_prime_UTR
TTGCTTGCTCACAACGCTGG+TGG 0.684054 4_2:-4342404 Msa0584590:CDS
AAAACGTGGCAGATGGAGTG+TGG 0.696847 4_2:+4348644 None:intergenic
TAGCTATGATTCATGCATGG+GGG 0.705108 4_2:-4342105 Msa0584590:three_prime_UTR
CAGCCCCGACACAATTCTAG+CGG 0.705668 4_2:+4342943 None:intergenic
AGGGCCGTTGAAACCACATG+AGG 0.722984 4_2:+4342795 None:intergenic
AGTGCATAACTATAGGACGG+GGG 0.762715 4_2:+4349305 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATAAATTATATTTTT+AGG - chr4_2:4347623-4347642 Msa0584590:intron 0.0%
!!! TTTTTTATTTTTTTTGAAAG+GGG - chr4_2:4342083-4342102 Msa0584590:three_prime_UTR 10.0%
!!! ATTAGTCTTTTAAATTATTT+TGG - chr4_2:4342786-4342805 Msa0584590:exon 10.0%
!! AAAAAAATTATAAATGTATC+TGG + chr4_2:4343743-4343762 None:intergenic 10.0%
!!! AATTTAGTTATTTTACTTAA+TGG - chr4_2:4344588-4344607 Msa0584590:intron 10.0%
!! TTTGAAAAAAAAAACTTAAT+AGG - chr4_2:4344854-4344873 Msa0584590:intron 10.0%
!!! ACATATATAATTTGATTTAA+TGG - chr4_2:4345070-4345089 Msa0584590:intron 10.0%
!! AAATTTGATAAAAAAATTAG+AGG + chr4_2:4345284-4345303 None:intergenic 10.0%
!! AAATAAAAACATATGATAAA+AGG + chr4_2:4345881-4345900 None:intergenic 10.0%
!!! ATTTTAAAATTCATCAATTT+TGG + chr4_2:4346407-4346426 None:intergenic 10.0%
!! AGAAACAATATATAAATAAA+GGG + chr4_2:4347288-4347307 None:intergenic 10.0%
!! AAGAAACAATATATAAATAA+AGG + chr4_2:4347289-4347308 None:intergenic 10.0%
!! CAATATAAATTAAAGAAATT+GGG - chr4_2:4350018-4350037 Msa0584590:five_prime_UTR 10.0%
!!! TATAAATTTTTGGATTAATG+TGG + chr4_2:4342129-4342148 None:intergenic 15.0%
!! AATAATTTCACTACAATATA+GGG + chr4_2:4342351-4342370 None:intergenic 15.0%
!! CCTCAAAAAAAAAAAAAAAT+AGG + chr4_2:4342475-4342494 None:intergenic 15.0%
!!! CCTATTTTTTTTTTTTTTTG+AGG - chr4_2:4342472-4342491 Msa0584590:CDS 15.0%
!!! AACTTTATGATTTGTTAAAA+AGG + chr4_2:4343058-4343077 None:intergenic 15.0%
!! AAATTTAAATAAGACTAAGT+AGG + chr4_2:4343661-4343680 None:intergenic 15.0%
!! GCAAAATTGAATTATAAAAT+TGG - chr4_2:4344103-4344122 Msa0584590:intron 15.0%
!! AAAGAAAGAAGAAAAAAATA+GGG + chr4_2:4344713-4344732 None:intergenic 15.0%
!! AAAAGAAAGAAGAAAAAAAT+AGG + chr4_2:4344714-4344733 None:intergenic 15.0%
!! TATAAGTGATTATTTGAAAA+AGG - chr4_2:4344818-4344837 Msa0584590:intron 15.0%
!!! CTTATTGATCTTTTTTTTTT+TGG + chr4_2:4345045-4345064 None:intergenic 15.0%
!!! GATTTAATATTTTCCAAAAT+AGG - chr4_2:4345573-4345592 Msa0584590:intron 15.0%
!!! TATACTATGGTATAATTTTA+TGG - chr4_2:4345664-4345683 Msa0584590:intron 15.0%
!! AAGTATTATATACAATAATC+TGG + chr4_2:4345729-4345748 None:intergenic 15.0%
!!! TACATATGATTTTTTTTTTG+AGG + chr4_2:4345906-4345925 None:intergenic 15.0%
!! TAATTTAGATAATGTCATAT+GGG + chr4_2:4346005-4346024 None:intergenic 15.0%
!! ATAATTTAGATAATGTCATA+TGG + chr4_2:4346006-4346025 None:intergenic 15.0%
!!! TCATATTCTTATTAGATTTT+AGG - chr4_2:4346025-4346044 Msa0584590:intron 15.0%
!!! TCTTTAGTTTATAAATAAGT+GGG + chr4_2:4346133-4346152 None:intergenic 15.0%
!!! TTCTTTAGTTTATAAATAAG+TGG + chr4_2:4346134-4346153 None:intergenic 15.0%
!! CATGTAAATAATTTATCAAT+TGG - chr4_2:4346295-4346314 Msa0584590:intron 15.0%
!! AAAAGAAACCTTATAAAAAA+TGG - chr4_2:4346531-4346550 Msa0584590:intron 15.0%
!!! ATATTTCACCATTTTTTATA+AGG + chr4_2:4346542-4346561 None:intergenic 15.0%
!! TATTGTTGATATAACAAATA+TGG - chr4_2:4346559-4346578 Msa0584590:intron 15.0%
!! ATAAAAATAGTGAAAAAGTA+TGG + chr4_2:4346738-4346757 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr4_2:4347225-4347244 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr4_2:4347226-4347245 None:intergenic 15.0%
!! AAAAGTGAAATATATTGTAT+GGG + chr4_2:4347265-4347284 None:intergenic 15.0%
!! TTAAATTATGTAATTTAGGA+GGG + chr4_2:4347451-4347470 None:intergenic 15.0%
!! ATTAAATTATGTAATTTAGG+AGG + chr4_2:4347452-4347471 None:intergenic 15.0%
!!! ACAAGATAATTTTTTTTGAA+AGG - chr4_2:4347547-4347566 Msa0584590:intron 15.0%
!!! TATTTTTATGTAATTGAGAT+AGG + chr4_2:4348191-4348210 None:intergenic 15.0%
!! ATTGAGAATAATAACTATTA+AGG + chr4_2:4348268-4348287 None:intergenic 15.0%
!!! TAAACATTGATAATATCTTT+AGG - chr4_2:4348342-4348361 Msa0584590:intron 15.0%
!! CAATAAAAACTTGTAATAAT+AGG + chr4_2:4348474-4348493 None:intergenic 15.0%
!! TATTAGTGAATTATAAAAGA+AGG - chr4_2:4348872-4348891 Msa0584590:five_prime_UTR 15.0%
!! CACAAAAGATTTAATTATAA+TGG - chr4_2:4349301-4349320 Msa0584590:five_prime_UTR 15.0%
!! GCAATATAAATTAAAGAAAT+TGG - chr4_2:4350017-4350036 Msa0584590:five_prime_UTR 15.0%
!! TATATAGTTAAAGTGTGTTT+GGG + chr4_2:4342063-4342082 None:intergenic 20.0%
!! ATATATAGTTAAAGTGTGTT+TGG + chr4_2:4342064-4342083 None:intergenic 20.0%
!! ATAATTATTTAATCACCTAC+TGG + chr4_2:4342157-4342176 None:intergenic 20.0%
!! CAATAATTTCACTACAATAT+AGG + chr4_2:4342352-4342371 None:intergenic 20.0%
!! CTATATTGTAGTGAAATTAT+TGG - chr4_2:4342350-4342369 Msa0584590:CDS 20.0%
!!! ATATAACTTCTTTAAGTTTG+AGG - chr4_2:4342753-4342772 Msa0584590:CDS 20.0%
!!! GATTGGTTTTTAAGTTATTT+TGG + chr4_2:4342934-4342953 None:intergenic 20.0%
!!! ATTAGTCTTTTAAGTTATGT+TGG + chr4_2:4342993-4343012 None:intergenic 20.0%
!! ATCTTAATTAAAGATAGTGT+TGG + chr4_2:4344682-4344701 None:intergenic 20.0%
!!! AGACTTTTACTTTTCTAATT+TGG + chr4_2:4345462-4345481 None:intergenic 20.0%
!! GTCATCATTATTTAAAAATC+AGG + chr4_2:4345492-4345511 None:intergenic 20.0%
!! GTTTGATATTAGTTATACTA+TGG - chr4_2:4345651-4345670 Msa0584590:intron 20.0%
!! AAGAAAAAGAAGATTATAAC+CGG + chr4_2:4345775-4345794 None:intergenic 20.0%
!! GTAAATAATTTATCAATTGG+AGG - chr4_2:4346298-4346317 Msa0584590:intron 20.0%
!!! CAAATTTTTAGACTAAACAA+TGG + chr4_2:4346375-4346394 None:intergenic 20.0%
!! GGTCTATAATGATAAAATAT+AGG + chr4_2:4346484-4346503 None:intergenic 20.0%
!!! TAACTTTTGTATTTTGTTAG+TGG - chr4_2:4346635-4346654 Msa0584590:intron 20.0%
!!! TAGATTTTGTATTTGAAGAT+GGG + chr4_2:4346792-4346811 None:intergenic 20.0%
!!! ATAGATTTTGTATTTGAAGA+TGG + chr4_2:4346793-4346812 None:intergenic 20.0%
!! GAAAAGTGAAATATATTGTA+TGG + chr4_2:4347266-4347285 None:intergenic 20.0%
!! TTATAAAAAAACTCAGCTAT+AGG - chr4_2:4347700-4347719 Msa0584590:intron 20.0%
!! AAGTGTTATATCAACAATAT+GGG + chr4_2:4347870-4347889 None:intergenic 20.0%
!!! AAAGTGTTATATCAACAATA+TGG + chr4_2:4347871-4347890 None:intergenic 20.0%
!!! TTTTTTTTTTTAAGAGAGTG+TGG + chr4_2:4347899-4347918 None:intergenic 20.0%
!! AAAAACTTGTAATAATAGGA+TGG + chr4_2:4348470-4348489 None:intergenic 20.0%
!!! GTTTAACAAATTAAGTCTTT+TGG - chr4_2:4349045-4349064 Msa0584590:five_prime_UTR 20.0%
!!! TTTTCAAATTATTGTGCATT+TGG - chr4_2:4349272-4349291 Msa0584590:five_prime_UTR 20.0%
!!! TTTAAAATTGACCTTATCTT+GGG - chr4_2:4349345-4349364 Msa0584590:five_prime_UTR 20.0%
!! TTCAAATTATGATACACAAA+AGG + chr4_2:4349792-4349811 None:intergenic 20.0%
!!! AGTTAAATGAATTTTAGAAG+AGG + chr4_2:4349986-4350005 None:intergenic 20.0%
!!! ACTGGAAGAGTATAAATTTT+TGG + chr4_2:4342139-4342158 None:intergenic 25.0%
! AAAATTTATACTCTTCCAGT+AGG - chr4_2:4342139-4342158 Msa0584590:three_prime_UTR 25.0%
! TATTGTAGTGAAATTATTGG+AGG - chr4_2:4342353-4342372 Msa0584590:CDS 25.0%
! CTAACGTGTCAATATTTAAA+CGG - chr4_2:4342403-4342422 Msa0584590:CDS 25.0%
!! TGATCTTGTTTATTTAGCAA+AGG - chr4_2:4342669-4342688 Msa0584590:intron 25.0%
!! GAAAGCTTTTACAAACTTAA+AGG + chr4_2:4342824-4342843 None:intergenic 25.0%
!! ATTTGAGGTAAATCTAAAGT+TGG + chr4_2:4343088-4343107 None:intergenic 25.0%
! TATTACTTCAATAATGCACA+TGG - chr4_2:4343264-4343283 Msa0584590:five_prime_UTR 25.0%
! AATGGTTAATAAAGACGATA+AGG + chr4_2:4343360-4343379 None:intergenic 25.0%
!!! CATTCTTTTTTACACAAACA+TGG - chr4_2:4343467-4343486 Msa0584590:intron 25.0%
! AACTGAACATTATACAAACT+GGG + chr4_2:4343831-4343850 None:intergenic 25.0%
! AGTTTGTATAATGTTCAGTT+CGG - chr4_2:4343831-4343850 Msa0584590:intron 25.0%
! TTGCAAAAAAATTTCATGCA+AGG - chr4_2:4343963-4343982 Msa0584590:intron 25.0%
! TGCAAAAAAATTTCATGCAA+GGG - chr4_2:4343964-4343983 Msa0584590:intron 25.0%
!! AATAATTAGTGTTGAGATTG+TGG - chr4_2:4343990-4344009 Msa0584590:intron 25.0%
! ATGTAAACTACATATGTGTA+AGG - chr4_2:4344045-4344064 Msa0584590:intron 25.0%
! GAATTATAAAATTGGACAAC+AGG - chr4_2:4344111-4344130 Msa0584590:intron 25.0%
! ACAAAAATTGTTCAACATTG+TGG + chr4_2:4344525-4344544 None:intergenic 25.0%
!!! TTTTTACCCTTTTTTTACTG+AGG - chr4_2:4344899-4344918 Msa0584590:intron 25.0%
! CTTTAACCTCAGTAAAAAAA+GGG + chr4_2:4344908-4344927 None:intergenic 25.0%
! ACTTTAACCTCAGTAAAAAA+AGG + chr4_2:4344909-4344928 None:intergenic 25.0%
! AAAAAATTAGAGGATCTTGT+AGG + chr4_2:4345274-4345293 None:intergenic 25.0%
!! GTTTTGTCTCAAAAATTTGA+GGG + chr4_2:4345367-4345386 None:intergenic 25.0%
!! ATAATTTTGTCTACCACAAT+GGG - chr4_2:4345629-4345648 Msa0584590:intron 25.0%
!! CTTTTTCTTTTACAAAATCG+TGG - chr4_2:4345786-4345805 Msa0584590:intron 25.0%
!!! GTATTTTATTTATCTAGCTG+AGG - chr4_2:4345923-4345942 Msa0584590:intron 25.0%
! TAGTTTATAAATAAGTGGGA+GGG + chr4_2:4346129-4346148 None:intergenic 25.0%
! TTAGTTTATAAATAAGTGGG+AGG + chr4_2:4346130-4346149 None:intergenic 25.0%
! TATTGATCATTCCATTTCAT+CGG + chr4_2:4346195-4346214 None:intergenic 25.0%
!!! ATGAGTGGATTTTGAATTTT+AGG + chr4_2:4346586-4346605 None:intergenic 25.0%
! ACAAAATACAAAAGTTACAC+CGG + chr4_2:4346632-4346651 None:intergenic 25.0%
! GTAAATAACTCAGAATTTGT+TGG - chr4_2:4346665-4346684 Msa0584590:intron 25.0%
!! AGATTTTGTATTTGAAGATG+GGG + chr4_2:4346791-4346810 None:intergenic 25.0%
!!! AATTATTGAGGATGTTTTGA+TGG + chr4_2:4346818-4346837 None:intergenic 25.0%
! GTTGATTATCTATTCTCTAT+TGG + chr4_2:4346894-4346913 None:intergenic 25.0%
! GGAAGAAAAGAAAGTAAAAA+AGG - chr4_2:4347031-4347050 Msa0584590:intron 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + chr4_2:4347179-4347198 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + chr4_2:4347180-4347199 None:intergenic 25.0%
! TCTAAATAGGATAAAGAAAG+AGG + chr4_2:4347396-4347415 None:intergenic 25.0%
! TTGACATGATATCGAATTAA+CGG - chr4_2:4347482-4347501 Msa0584590:intron 25.0%
! CTCAATTTAAAAGGAACATT+GGG + chr4_2:4347830-4347849 None:intergenic 25.0%
! AATATGGACCTCAATTTAAA+AGG + chr4_2:4347839-4347858 None:intergenic 25.0%
! TTTAAATTGAGGTCCATATT+AGG - chr4_2:4347839-4347858 Msa0584590:intron 25.0%
! TTAAATTGAGGTCCATATTA+GGG - chr4_2:4347840-4347859 Msa0584590:intron 25.0%
! CATCAATAAAATAGTAAGTG+TGG + chr4_2:4347925-4347944 None:intergenic 25.0%
! ATCTTTCATAACACATATTG+TGG + chr4_2:4348080-4348099 None:intergenic 25.0%
! CTCTCTATAATTAAAAGATG+TGG - chr4_2:4348242-4348261 Msa0584590:intron 25.0%
!! TTCTCAATTTTTGCAACAAA+AGG - chr4_2:4348280-4348299 Msa0584590:intron 25.0%
!! TCTCAATTTTTGCAACAAAA+GGG - chr4_2:4348281-4348300 Msa0584590:intron 25.0%
!! ATTACAAGTTTTTATTGACC+AGG - chr4_2:4348477-4348496 Msa0584590:five_prime_UTR 25.0%
!! TTACAAGTTTTTATTGACCA+GGG - chr4_2:4348478-4348497 Msa0584590:five_prime_UTR 25.0%
! TAATTCACTAATAAAGTAGC+AGG + chr4_2:4348865-4348884 None:intergenic 25.0%
!! TCATGAACAATTTGAAATGA+CGG - chr4_2:4348930-4348949 Msa0584590:five_prime_UTR 25.0%
!!! CTTTAAAATTGACCTTATCT+TGG - chr4_2:4349344-4349363 Msa0584590:five_prime_UTR 25.0%
! TCTTCAATATCTTTATGCAA+TGG + chr4_2:4349407-4349426 None:intergenic 25.0%
! GATATTGAAGAATTGTAGAA+AGG - chr4_2:4349416-4349435 Msa0584590:five_prime_UTR 25.0%
!!! TGAATTTTAGAAGAGGAAAA+GGG + chr4_2:4349979-4349998 None:intergenic 25.0%
!!! ATGAATTTTAGAAGAGGAAA+AGG + chr4_2:4349980-4349999 None:intergenic 25.0%
! AAATTAAAGAAATTGGGTCA+TGG - chr4_2:4350024-4350043 Msa0584590:five_prime_UTR 25.0%
! AATTAAAGAAATTGGGTCAT+GGG - chr4_2:4350025-4350044 Msa0584590:five_prime_UTR 25.0%
ATGTTATCATGTGAGTAAAG+GGG + chr4_2:4341935-4341954 None:intergenic 30.0%
CATGTTATCATGTGAGTAAA+GGG + chr4_2:4341936-4341955 None:intergenic 30.0%
ACATGTTATCATGTGAGTAA+AGG + chr4_2:4341937-4341956 None:intergenic 30.0%
!!! TAGATTTGTTTTGGTTCTCA+GGG + chr4_2:4342001-4342020 None:intergenic 30.0%
!! GCAACTATGTAGATTTGTTT+TGG + chr4_2:4342010-4342029 None:intergenic 30.0%
!! TTATCATGCACAATGGATTA+AGG + chr4_2:4342231-4342250 None:intergenic 30.0%
GTAAGATTTATCATGCACAA+TGG + chr4_2:4342238-4342257 None:intergenic 30.0%
TTTCACTACAATATAGGGAT+TGG + chr4_2:4342346-4342365 None:intergenic 30.0%
ATAAGTTATGACAAACCTTG+TGG + chr4_2:4342450-4342469 None:intergenic 30.0%
TTAGCATAGTGCATAACTAT+AGG + chr4_2:4342649-4342668 None:intergenic 30.0%
!!! TCAGAGATCTTTTAAGTTTG+AGG - chr4_2:4342702-4342721 Msa0584590:intron 30.0%
! GTTTGAGGTTTGTAATAGAT+TGG - chr4_2:4342717-4342736 Msa0584590:intron 30.0%
! TGTTAACCAAAATGATGATG+TGG - chr4_2:4342857-4342876 Msa0584590:five_prime_UTR 30.0%
GTTACAAACCTCAAACTTAA+AGG - chr4_2:4342955-4342974 Msa0584590:five_prime_UTR 30.0%
! ACATAAGTCCTTTAAGTTTG+AGG + chr4_2:4342966-4342985 None:intergenic 30.0%
AAAAGGTTAAGTTACACCAT+GGG + chr4_2:4343041-4343060 None:intergenic 30.0%
AAAAAGGTTAAGTTACACCA+TGG + chr4_2:4343042-4343061 None:intergenic 30.0%
! GCAATTAGAGAGTTAATTTG+AGG + chr4_2:4343103-4343122 None:intergenic 30.0%
TTTCCTTTACCACTACAATT+TGG + chr4_2:4343190-4343209 None:intergenic 30.0%
ATTGCTAAAGTTCAAAAACG+TGG + chr4_2:4343317-4343336 None:intergenic 30.0%
ATAAGGTGTGATGAAATATG+TGG + chr4_2:4343343-4343362 None:intergenic 30.0%
TTTGCAAGTTGCAAATTCAA+TGG + chr4_2:4343378-4343397 None:intergenic 30.0%
AAAAACGTTGCATATTGTCA+TGG + chr4_2:4343691-4343710 None:intergenic 30.0%
TTATTTAAGTGATGTTCCAG+TGG - chr4_2:4343769-4343788 Msa0584590:intron 30.0%
GAACTGAACATTATACAAAC+TGG + chr4_2:4343832-4343851 None:intergenic 30.0%
GGTCTACAATAAATCTTGAT+TGG - chr4_2:4344066-4344085 Msa0584590:intron 30.0%
GGTACATAACTAATCACAAA+TGG - chr4_2:4344132-4344151 Msa0584590:intron 30.0%
! CGTTAAAAAGGCAATTTTCA+TGG + chr4_2:4344289-4344308 None:intergenic 30.0%
!!! GCAAGTTTTAGACGTTAAAA+AGG + chr4_2:4344301-4344320 None:intergenic 30.0%
!!! GTTTTCTAGTTATAAGTCAG+CGG + chr4_2:4344371-4344390 None:intergenic 30.0%
CTGACTTATAACTAGAAAAC+TGG - chr4_2:4344371-4344390 Msa0584590:intron 30.0%
ACTTATAACTAGAAAACTGG+CGG - chr4_2:4344374-4344393 Msa0584590:intron 30.0%
!! AGTCTTTTTCATGTGTTTCT+AGG - chr4_2:4344421-4344440 Msa0584590:intron 30.0%
! TTTTCATCAGTTAGACATAG+TGG + chr4_2:4344555-4344574 None:intergenic 30.0%
! CGTTTTGTCTCAAAAATTTG+AGG + chr4_2:4345368-4345387 None:intergenic 30.0%
AAATTGACACTAATTCTCTC+TGG - chr4_2:4345521-4345540 Msa0584590:intron 30.0%
! GAGAAAAAACGAACCTATTT+TGG + chr4_2:4345589-4345608 None:intergenic 30.0%
! CATAATTTTGTCTACCACAA+TGG - chr4_2:4345628-4345647 Msa0584590:intron 30.0%
AACTAATATCAAACCCATTG+TGG + chr4_2:4345645-4345664 None:intergenic 30.0%
AGATAATGTCATATGGGTTT+GGG + chr4_2:4345999-4346018 None:intergenic 30.0%
TAGATAATGTCATATGGGTT+TGG + chr4_2:4346000-4346019 None:intergenic 30.0%
!!! ATCTTATTTTCAACCACTCA+TGG - chr4_2:4346066-4346085 Msa0584590:intron 30.0%
! AACGGGTGGATTTAAAAATA+GGG + chr4_2:4346101-4346120 None:intergenic 30.0%
! AAACGGGTGGATTTAAAAAT+AGG + chr4_2:4346102-4346121 None:intergenic 30.0%
! ATTTTTAAATCCACCCGTTT+TGG - chr4_2:4346102-4346121 Msa0584590:intron 30.0%
ATTGATCATTCCATTTCATC+GGG + chr4_2:4346194-4346213 None:intergenic 30.0%
GTTATCATCAGGAAAAAACA+GGG + chr4_2:4346610-4346629 None:intergenic 30.0%
!!! TGTTTTTTCCTGATGATAAC+CGG - chr4_2:4346610-4346629 Msa0584590:intron 30.0%
! GAAAAAGTATGGAACTATCT+TGG + chr4_2:4346727-4346746 None:intergenic 30.0%
!! TGAATTGTTTCTATCTGACT+TGG + chr4_2:4346868-4346887 None:intergenic 30.0%
TGCAACAAACTTGGTATAAT+AGG - chr4_2:4347010-4347029 Msa0584590:intron 30.0%
CTAAAGTCTAATAGTAGTAC+CGG - chr4_2:4347779-4347798 Msa0584590:intron 30.0%
AAGAACTTACTTACTATAGC+CGG + chr4_2:4347801-4347820 None:intergenic 30.0%
CTATAGTAAGTAAGTTCTTG+AGG - chr4_2:4347802-4347821 Msa0584590:intron 30.0%
CCTCAATTTAAAAGGAACAT+TGG + chr4_2:4347831-4347850 None:intergenic 30.0%
! CCAATGTTCCTTTTAAATTG+AGG - chr4_2:4347828-4347847 Msa0584590:intron 30.0%
ATAATAGGAATCTTTGACCT+AGG + chr4_2:4348374-4348393 None:intergenic 30.0%
GTCAAAGATTCCTATTATGT+TGG - chr4_2:4348376-4348395 Msa0584590:intron 30.0%
ATTTGCGAATCCAACATAAT+AGG + chr4_2:4348389-4348408 None:intergenic 30.0%
ATGCTTGGACAAATGAAATA+TGG - chr4_2:4348524-4348543 Msa0584590:five_prime_UTR 30.0%
GCCATAAGGTCTATAAATAT+CGG + chr4_2:4348611-4348630 None:intergenic 30.0%
! ACAATTTGAGTTAAGGATAG+TGG + chr4_2:4348636-4348655 None:intergenic 30.0%
! ATTCTGCACAATTTGAGTTA+AGG + chr4_2:4348643-4348662 None:intergenic 30.0%
TTAAAAGTAGAGTGGAATCA+GGG + chr4_2:4348682-4348701 None:intergenic 30.0%
TCATTACCTTAAAAGTAGAG+TGG + chr4_2:4348690-4348709 None:intergenic 30.0%
!!! TTTTAAGGTAATGAGAGTCA+TGG - chr4_2:4348696-4348715 Msa0584590:five_prime_UTR 30.0%
!!! AATGTCATTTTGTGTCTTGT+AGG + chr4_2:4348801-4348820 None:intergenic 30.0%
TACAAGACACAAAATGACAT+TGG - chr4_2:4348800-4348819 Msa0584590:five_prime_UTR 30.0%
! ATAAAAGAAGGCACAACAAA+TGG - chr4_2:4348884-4348903 Msa0584590:five_prime_UTR 30.0%
! CATGAACAATTTGAAATGAC+GGG - chr4_2:4348931-4348950 Msa0584590:five_prime_UTR 30.0%
! ATGAACAATTTGAAATGACG+GGG - chr4_2:4348932-4348951 Msa0584590:five_prime_UTR 30.0%
!! TTAAGTCTTTTGGTTGATGT+TGG - chr4_2:4349055-4349074 Msa0584590:five_prime_UTR 30.0%
AAGTTAATAGCTTGAATGTG+AGG + chr4_2:4349122-4349141 None:intergenic 30.0%
TAAATGGTTCATTTCCTTCT+GGG + chr4_2:4349491-4349510 None:intergenic 30.0%
AAATACTTATTCAACGAGAC+AGG - chr4_2:4349588-4349607 Msa0584590:five_prime_UTR 30.0%
!!! TTTTGATGATGTTGTAACGA+GGG + chr4_2:4349617-4349636 None:intergenic 30.0%
!!! ATTTTGATGATGTTGTAACG+AGG + chr4_2:4349618-4349637 None:intergenic 30.0%
ATCTTCCATGAATTTAGACT+GGG + chr4_2:4349671-4349690 None:intergenic 30.0%
!!! ACTTGGAGTTTTGTTATCTA+AGG - chr4_2:4349758-4349777 Msa0584590:five_prime_UTR 30.0%
!!! GTAGATTTGTTTTGGTTCTC+AGG + chr4_2:4342002-4342021 None:intergenic 35.0%
! ACCTTACATGCATGAGTTTT+TGG - chr4_2:4342032-4342051 Msa0584590:three_prime_UTR 35.0%
ACCAAAAACTCATGCATGTA+AGG + chr4_2:4342036-4342055 None:intergenic 35.0%
!! TTACATGCATGAGTTTTTGG+TGG - chr4_2:4342035-4342054 Msa0584590:three_prime_UTR 35.0%
! CAATATAGGGATTGGTATGT+CGG + chr4_2:4342338-4342357 None:intergenic 35.0%
AAATTGAAGATGTGACCACA+AGG - chr4_2:4342432-4342451 Msa0584590:CDS 35.0%
AGGCTAACTTATGTCCTATA+GGG - chr4_2:4342492-4342511 Msa0584590:CDS 35.0%
ATAGTGCATAACTATAGGAC+GGG + chr4_2:4342644-4342663 None:intergenic 35.0%
CATAGTGCATAACTATAGGA+CGG + chr4_2:4342645-4342664 None:intergenic 35.0%
! GTTTGAGGTTTGTAACAGAT+TGG + chr4_2:4342768-4342787 None:intergenic 35.0%
GAACCAAATTGTAGTGGTAA+AGG - chr4_2:4343184-4343203 Msa0584590:five_prime_UTR 35.0%
TAATGTGATTGATGAGTGTG+TGG + chr4_2:4343241-4343260 None:intergenic 35.0%
!!! CTTTGTTTTGGTTCCAATTC+AGG + chr4_2:4343414-4343433 None:intergenic 35.0%
CTGAATTGGAACCAAAACAA+AGG - chr4_2:4343412-4343431 Msa0584590:five_prime_UTR 35.0%
AATGAGATGATTCAAGTGAG+GGG + chr4_2:4343451-4343470 None:intergenic 35.0%
GAATGAGATGATTCAAGTGA+GGG + chr4_2:4343452-4343471 None:intergenic 35.0%
AGAATGAGATGATTCAAGTG+AGG + chr4_2:4343453-4343472 None:intergenic 35.0%
GAACATTATACAAACTGGGA+AGG + chr4_2:4343827-4343846 None:intergenic 35.0%
GTATAATGTTCAGTTCGGAT+TGG - chr4_2:4343836-4343855 Msa0584590:intron 35.0%
!!! TGGAATCTTTTTTTCCACTG+TGG - chr4_2:4343889-4343908 Msa0584590:intron 35.0%
TGAATTAATTACAGCCACAG+TGG + chr4_2:4343906-4343925 None:intergenic 35.0%
! AGACACACTAATGGATCATA+TGG - chr4_2:4344174-4344193 Msa0584590:intron 35.0%
CGGTATTTAACTACAGTTGA+GGG + chr4_2:4344351-4344370 None:intergenic 35.0%
! TTTTTCATATCACGTGTGGA+TGG + chr4_2:4344481-4344500 None:intergenic 35.0%
TCCACACGTGATATGAAAAA+TGG - chr4_2:4344481-4344500 Msa0584590:intron 35.0%
!! TCCATTTTTCATATCACGTG+TGG + chr4_2:4344485-4344504 None:intergenic 35.0%
TTGTGCACATTAGACAATTG+TGG + chr4_2:4344956-4344975 None:intergenic 35.0%
CATTAGCATGTTTGATTAGC+CGG - chr4_2:4345753-4345772 Msa0584590:intron 35.0%
GGTTATCATCAGGAAAAAAC+AGG + chr4_2:4346611-4346630 None:intergenic 35.0%
GCAGGTAGCTTAAATTATTG+AGG + chr4_2:4346830-4346849 None:intergenic 35.0%
TGGCAAAATAGCTATTATGC+AGG + chr4_2:4346848-4346867 None:intergenic 35.0%
TGATTGATACTGATCAACTG+TGG + chr4_2:4346979-4346998 None:intergenic 35.0%
TTGTTCATGTGCAACAAACT+TGG - chr4_2:4347001-4347020 Msa0584590:intron 35.0%
TCCACAATTATTTGACCCTT+TGG + chr4_2:4347328-4347347 None:intergenic 35.0%
AAGGGTCAAATAATTGTGGA+CGG - chr4_2:4347328-4347347 Msa0584590:intron 35.0%
AGAGCAGAGAGAAAAAGATA+CGG + chr4_2:4347371-4347390 None:intergenic 35.0%
GCAAGAGGAAAGATCTAAAT+AGG + chr4_2:4347409-4347428 None:intergenic 35.0%
AGACTATCCTGACATCAAAA+CGG - chr4_2:4347517-4347536 Msa0584590:intron 35.0%
AATATGGGAGAACCCTAATA+TGG + chr4_2:4347855-4347874 None:intergenic 35.0%
CATAACACATATTGTGGTGT+GGG + chr4_2:4348074-4348093 None:intergenic 35.0%
TCATAACACATATTGTGGTG+TGG + chr4_2:4348075-4348094 None:intergenic 35.0%
! CACTTTGAAGACATCAAGAA+AGG - chr4_2:4348129-4348148 Msa0584590:intron 35.0%
AAAAGGGAATAAACAGTGTC+TGG - chr4_2:4348297-4348316 Msa0584590:intron 35.0%
ATATCTTTAGGTGTTTGCCT+AGG - chr4_2:4348354-4348373 Msa0584590:intron 35.0%
GCCGATATTTATAGACCTTA+TGG - chr4_2:4348607-4348626 Msa0584590:five_prime_UTR 35.0%
CTTAAAAGTAGAGTGGAATC+AGG + chr4_2:4348683-4348702 None:intergenic 35.0%
!! CTGATTCCACTCTACTTTTA+AGG - chr4_2:4348681-4348700 Msa0584590:five_prime_UTR 35.0%
AGTGCAGAAAAATCAGAAAC+CGG - chr4_2:4348736-4348755 Msa0584590:five_prime_UTR 35.0%
GTATTCTCTAGCAACAACAT+TGG + chr4_2:4348828-4348847 None:intergenic 35.0%
GTAGCAGGTTCAAATGAAAA+GGG + chr4_2:4348850-4348869 None:intergenic 35.0%
AGTAGCAGGTTCAAATGAAA+AGG + chr4_2:4348851-4348870 None:intergenic 35.0%
!! TACAATGACTTGTTCAACCA+AGG - chr4_2:4348967-4348986 Msa0584590:five_prime_UTR 35.0%
TGTTATTGCTGGATACAAGA+TGG - chr4_2:4349022-4349041 Msa0584590:five_prime_UTR 35.0%
GTTATTGCTGGATACAAGAT+GGG - chr4_2:4349023-4349042 Msa0584590:five_prime_UTR 35.0%
!! TAACTTTGATTTGCCTCATG+TGG - chr4_2:4349136-4349155 Msa0584590:five_prime_UTR 35.0%
TGGGTGATACCATCAAATTA+GGG + chr4_2:4349171-4349190 None:intergenic 35.0%
ATGGGTGATACCATCAAATT+AGG + chr4_2:4349172-4349191 None:intergenic 35.0%
TCATAAATAGCATCAGCACT+AGG + chr4_2:4349222-4349241 None:intergenic 35.0%
!! AGTGCTGATGCTATTTATGA+AGG - chr4_2:4349222-4349241 Msa0584590:five_prime_UTR 35.0%
AATACCAGAGAAAACAGGAA+AGG - chr4_2:4349440-4349459 Msa0584590:five_prime_UTR 35.0%
GATCATTGTGGATCATGTAT+TGG - chr4_2:4349464-4349483 Msa0584590:five_prime_UTR 35.0%
GTAAATGGTTCATTTCCTTC+TGG + chr4_2:4349492-4349511 None:intergenic 35.0%
AAGAAAGAACTGAAGAGAAC+TGG - chr4_2:4349565-4349584 Msa0584590:five_prime_UTR 35.0%
CATCTTCCATGAATTTAGAC+TGG + chr4_2:4349672-4349691 None:intergenic 35.0%
AGTAAAGGGGATTGCTCTTT+AGG + chr4_2:4341922-4341941 None:intergenic 40.0%
TGGAGGTCTATGTCCATATA+TGG - chr4_2:4342370-4342389 Msa0584590:CDS 40.0%
TAGCACATGTGTGCCATATA+TGG + chr4_2:4342386-4342405 None:intergenic 40.0%
GAGGCTAACTTATGTCCTAT+AGG - chr4_2:4342491-4342510 Msa0584590:CDS 40.0%
TGTCCTATAGGGACAATACT+TGG - chr4_2:4342503-4342522 Msa0584590:CDS 40.0%
GTCCTATAGGGACAATACTT+GGG - chr4_2:4342504-4342523 Msa0584590:CDS 40.0%
!! CAATACTTGGGTGCCATTAA+TGG - chr4_2:4342516-4342535 Msa0584590:CDS 40.0%
TAGTGCATAACTATAGGACG+GGG + chr4_2:4342643-4342662 None:intergenic 40.0%
! CTTCTGCCACATCATCATTT+TGG + chr4_2:4342866-4342885 None:intergenic 40.0%
! CAAAATGATGATGTGGCAGA+AGG - chr4_2:4342864-4342883 Msa0584590:five_prime_UTR 40.0%
ACCACAAACTTAAAGACCCA+TGG - chr4_2:4343022-4343041 Msa0584590:five_prime_UTR 40.0%
! ACCATGGGTCTTTAAGTTTG+TGG + chr4_2:4343026-4343045 None:intergenic 40.0%
TTCTGCACTACAATGTAGTG+TGG + chr4_2:4343167-4343186 None:intergenic 40.0%
AGTGCAGAACCAAATTGTAG+TGG - chr4_2:4343178-4343197 Msa0584590:five_prime_UTR 40.0%
AAGTTCAAAAACGTGGCAGA+TGG + chr4_2:4343310-4343329 None:intergenic 40.0%
!! AGGGAAGAAAGCCTTTGTTT+TGG + chr4_2:4343426-4343445 None:intergenic 40.0%
TCTATATCTACGCACCTTGA+AGG + chr4_2:4343526-4343545 None:intergenic 40.0%
! TGATGTTCCAGTGGCTTTTA+TGG - chr4_2:4343778-4343797 Msa0584590:intron 40.0%
TTATACAAACTGGGAAGGCA+GGG + chr4_2:4343822-4343841 None:intergenic 40.0%
ATTATACAAACTGGGAAGGC+AGG + chr4_2:4343823-4343842 None:intergenic 40.0%
TTGGGAAACTCATCAGGAAA+TGG - chr4_2:4343869-4343888 Msa0584590:intron 40.0%
GCGGTATTTAACTACAGTTG+AGG + chr4_2:4344352-4344371 None:intergenic 40.0%
! CAATTGTGGTGCTAACTCAA+TGG + chr4_2:4344942-4344961 None:intergenic 40.0%
AGGGAGATAAAATCCATGAG+TGG + chr4_2:4346082-4346101 None:intergenic 40.0%
TGACATACAACCCGATGAAA+TGG - chr4_2:4346181-4346200 Msa0584590:intron 40.0%
TTCCACGACGAGGTAAAAAT+AGG - chr4_2:4346438-4346457 Msa0584590:intron 40.0%
TCCACGACGAGGTAAAAATA+GGG - chr4_2:4346439-4346458 Msa0584590:intron 40.0%
AGGAAAAAACAGGGAATGAG+TGG + chr4_2:4346601-4346620 None:intergenic 40.0%
! AAGTTACACCGGTTATCATC+AGG + chr4_2:4346621-4346640 None:intergenic 40.0%
!! TAACCATTTTTGCAACCCTG+TGG - chr4_2:4346699-4346718 Msa0584590:intron 40.0%
!! AACCATTTTTGCAACCCTGT+GGG - chr4_2:4346700-4346719 Msa0584590:intron 40.0%
ATCTGTGTGAAATGAGCCAA+AGG - chr4_2:4347309-4347328 Msa0584590:intron 40.0%
TCTGTGTGAAATGAGCCAAA+GGG - chr4_2:4347310-4347329 Msa0584590:intron 40.0%
GCCAAAGGGTCAAATAATTG+TGG - chr4_2:4347324-4347343 Msa0584590:intron 40.0%
GTCAAATAATTGTGGACGGA+GGG - chr4_2:4347332-4347351 Msa0584590:intron 40.0%
TCAAATAATTGTGGACGGAG+GGG - chr4_2:4347333-4347352 Msa0584590:intron 40.0%
GAGCAGAGAGAAAAAGATAC+GGG + chr4_2:4347370-4347389 None:intergenic 40.0%
! GTATCTTTTTCTCTCTGCTC+TGG - chr4_2:4347370-4347389 Msa0584590:intron 40.0%
TTTAGTACCAAGTGACACGT+GGG + chr4_2:4347730-4347749 None:intergenic 40.0%
! TTTTAGTACCAAGTGACACG+TGG + chr4_2:4347731-4347750 None:intergenic 40.0%
!! ACTTTAGAGCTTCAACCATG+CGG + chr4_2:4347766-4347785 None:intergenic 40.0%
TAAGAGTCCACCACTATATG+TGG - chr4_2:4348023-4348042 Msa0584590:intron 40.0%
AAGAGTCCACCACTATATGT+GGG - chr4_2:4348024-4348043 Msa0584590:intron 40.0%
ACTATGAGTCCCACATATAG+TGG + chr4_2:4348036-4348055 None:intergenic 40.0%
TATTGTGGTGTGGGTCATTT+CGG + chr4_2:4348065-4348084 None:intergenic 40.0%
GGAAGAAGAAGAATCATGCT+TGG - chr4_2:4348509-4348528 Msa0584590:five_prime_UTR 40.0%
!!! TTTTGCTCTAAAAGCTGTCG+TGG - chr4_2:4348573-4348592 Msa0584590:five_prime_UTR 40.0%
! TAAGGATAGTGGTTGCCATA+AGG + chr4_2:4348625-4348644 None:intergenic 40.0%
GTGCAGAAAAATCAGAAACC+GGG - chr4_2:4348737-4348756 Msa0584590:five_prime_UTR 40.0%
TGCAGAAAAATCAGAAACCG+GGG - chr4_2:4348738-4348757 Msa0584590:five_prime_UTR 40.0%
ACAAATGGCACTGCTTTCTT+AGG - chr4_2:4348899-4348918 Msa0584590:five_prime_UTR 40.0%
! ACAATTTGAAATGACGGGGT+TGG - chr4_2:4348936-4348955 Msa0584590:five_prime_UTR 40.0%
!! TGACTTGTTCAACCAAGGTA+TGG - chr4_2:4348972-4348991 Msa0584590:five_prime_UTR 40.0%
!! AGTCTTTTGGTTGATGTTGG+CGG - chr4_2:4349058-4349077 Msa0584590:five_prime_UTR 40.0%
! GAGGATAAGCTCTAACAATC+TGG + chr4_2:4349103-4349122 None:intergenic 40.0%
TTTGCCTCATGTGGTTTCAA+CGG - chr4_2:4349145-4349164 Msa0584590:five_prime_UTR 40.0%
TTTCAACGGCCCTAATTTGA+TGG - chr4_2:4349159-4349178 Msa0584590:five_prime_UTR 40.0%
! TTTGATGGTATCACCCATGT+TGG - chr4_2:4349174-4349193 Msa0584590:five_prime_UTR 40.0%
AAACATGTCTCCTCCAACAT+GGG + chr4_2:4349190-4349209 None:intergenic 40.0%
TTGACCTTATCTTGGGTGAA+TGG - chr4_2:4349352-4349371 Msa0584590:five_prime_UTR 40.0%
AAGGCAATACCAGAGAAAAC+AGG - chr4_2:4349435-4349454 Msa0584590:five_prime_UTR 40.0%
! ATCACCTTTCCTGTTTTCTC+TGG + chr4_2:4349447-4349466 None:intergenic 40.0%
AACAGGAAAGGTGATCATTG+TGG - chr4_2:4349452-4349471 Msa0584590:five_prime_UTR 40.0%
AATGAACCATTTACCGACAC+TGG - chr4_2:4349498-4349517 Msa0584590:five_prime_UTR 40.0%
ATGAACCATTTACCGACACT+GGG - chr4_2:4349499-4349518 Msa0584590:five_prime_UTR 40.0%
GCATTCCCAGTCTAAATTCA+TGG - chr4_2:4349663-4349682 Msa0584590:five_prime_UTR 40.0%
ATGGAAGATGACGAGTTTGT+TGG - chr4_2:4349682-4349701 Msa0584590:five_prime_UTR 40.0%
TTCGTATGTGTTGTGTTGTG+TGG - chr4_2:4349731-4349750 Msa0584590:five_prime_UTR 40.0%
! TTGTGTTGTGTGGCTTTACT+TGG - chr4_2:4349741-4349760 Msa0584590:five_prime_UTR 40.0%
! CATGAATCATAGCTAGCTCT+AGG + chr4_2:4349834-4349853 None:intergenic 40.0%
AGCTAGCTATGATTCATGCA+TGG - chr4_2:4349836-4349855 Msa0584590:five_prime_UTR 40.0%
GCTAGCTATGATTCATGCAT+GGG - chr4_2:4349837-4349856 Msa0584590:five_prime_UTR 40.0%
CTAGCTATGATTCATGCATG+GGG - chr4_2:4349838-4349857 Msa0584590:five_prime_UTR 40.0%
TAGCTATGATTCATGCATGG+GGG - chr4_2:4349839-4349858 Msa0584590:five_prime_UTR 40.0%
GAGGAAAAGGGAAGAAAATG+TGG + chr4_2:4349967-4349986 None:intergenic 40.0%
!!! GTTTTGGTTCTCAGGGAAGA+TGG + chr4_2:4341994-4342013 None:intergenic 45.0%
! CACCCAAGTATTGTCCCTAT+AGG + chr4_2:4342509-4342528 None:intergenic 45.0%
!! TAATGGCACGGTGCCATTAA+TGG + chr4_2:4342532-4342551 None:intergenic 45.0%
CATCAATGGCCAGGATGTAA+TGG + chr4_2:4342549-4342568 None:intergenic 45.0%
CATTACATCCTGGCCATTGA+TGG - chr4_2:4342547-4342566 Msa0584590:CDS 45.0%
GTGTGTGTGATGTGTGTGTT+GGG + chr4_2:4342575-4342594 None:intergenic 45.0%
TGTGTGTGTGATGTGTGTGT+TGG + chr4_2:4342576-4342595 None:intergenic 45.0%
ACACATCACACACACACACT+TGG - chr4_2:4342580-4342599 Msa0584590:intron 45.0%
CACATCACACACACACACTT+GGG - chr4_2:4342581-4342600 Msa0584590:intron 45.0%
ACATCACACACACACACTTG+GGG - chr4_2:4342582-4342601 Msa0584590:intron 45.0%
AATGTGTGGCCCTGATCTAA+TGG - chr4_2:4342606-4342625 Msa0584590:intron 45.0%
AGTGCATAACTATAGGACGG+GGG + chr4_2:4342642-4342661 None:intergenic 45.0%
TGTGATTGATGAGTGTGTGG+TGG + chr4_2:4343238-4343257 None:intergenic 45.0%
CCAATTCAGGTGTGTTGGAT+TGG + chr4_2:4343401-4343420 None:intergenic 45.0%
CCAATCCAACACACCTGAAT+TGG - chr4_2:4343398-4343417 Msa0584590:five_prime_UTR 45.0%
TGGTTCCAATTCAGGTGTGT+TGG + chr4_2:4343406-4343425 None:intergenic 45.0%
ATGATTCAAGTGAGGGGTGA+GGG + chr4_2:4343445-4343464 None:intergenic 45.0%
! GTTCAGTTCGGATTGGACTA+TGG - chr4_2:4343843-4343862 Msa0584590:intron 45.0%
! TCGGATTGGACTATGGAGTT+TGG - chr4_2:4343850-4343869 Msa0584590:intron 45.0%
! CGGATTGGACTATGGAGTTT+GGG - chr4_2:4343851-4343870 Msa0584590:intron 45.0%
TGGAGTTTGGGAAACTCATC+AGG - chr4_2:4343863-4343882 Msa0584590:intron 45.0%
CACAAATGGCTCCACTTATG+TGG - chr4_2:4344146-4344165 Msa0584590:intron 45.0%
ATGGCTCCACTTATGTGGTT+TGG - chr4_2:4344151-4344170 Msa0584590:intron 45.0%
GTGTCTCCAAACCACATAAG+TGG + chr4_2:4344160-4344179 None:intergenic 45.0%
! GTGGTTTGGAGACACACTAA+TGG - chr4_2:4344165-4344184 Msa0584590:intron 45.0%
TTACTAATGTTGTGCGTCGC+AGG - chr4_2:4345960-4345979 Msa0584590:intron 45.0%
ATAAGTGGGAGGGACCAAAA+CGG + chr4_2:4346119-4346138 None:intergenic 45.0%
GAAAGATCAATTCCACGACG+AGG - chr4_2:4346428-4346447 Msa0584590:intron 45.0%
CCACGACGAGGTAAAAATAG+GGG - chr4_2:4346440-4346459 Msa0584590:intron 45.0%
CACGACGAGGTAAAAATAGG+GGG - chr4_2:4346441-4346460 Msa0584590:intron 45.0%
TTGAAGATGGGGCTCTACTT+TGG + chr4_2:4346780-4346799 None:intergenic 45.0%
TATCAAGAGAGAGATGGGAG+CGG + chr4_2:4347075-4347094 None:intergenic 45.0%
TCCCATCTCTCTCTTGATAG+CGG - chr4_2:4347076-4347095 Msa0584590:intron 45.0%
ACCGCTATCAAGAGAGAGAT+GGG + chr4_2:4347080-4347099 None:intergenic 45.0%
CGAAAATGACGTCAGTTCTC+CGG + chr4_2:4347143-4347162 None:intergenic 45.0%
GGTCAAATAATTGTGGACGG+AGG - chr4_2:4347331-4347350 Msa0584590:intron 45.0%
TCCTCTTGCTGAACATGTGT+CGG - chr4_2:4347420-4347439 Msa0584590:intron 45.0%
GTCAGGATAGTCTCTTCTTC+AGG + chr4_2:4347510-4347529 None:intergenic 45.0%
CTATCCTGACATCAAAACGG+TGG - chr4_2:4347520-4347539 Msa0584590:intron 45.0%
AAACATGCAATCAGTCCGCA+TGG - chr4_2:4347748-4347767 Msa0584590:intron 45.0%
ATGAGTCCCACATATAGTGG+TGG + chr4_2:4348033-4348052 None:intergenic 45.0%
AAGTAGAGTGGAATCAGGGA+AGG + chr4_2:4348678-4348697 None:intergenic 45.0%
GAAACCGGGGAAATTCTCTA+CGG - chr4_2:4348751-4348770 Msa0584590:five_prime_UTR 45.0%
GCTTGACACGTGCATCAAAA+TGG - chr4_2:4348773-4348792 Msa0584590:five_prime_UTR 45.0%
CACTGCTTTCTTAGGTGTCA+TGG - chr4_2:4348907-4348926 Msa0584590:five_prime_UTR 45.0%
TTGCACCGCTAGAATTGTGT+CGG - chr4_2:4348996-4349015 Msa0584590:five_prime_UTR 45.0%
!! GTCTTTTGGTTGATGTTGGC+GGG - chr4_2:4349059-4349078 Msa0584590:five_prime_UTR 45.0%
!! TCTTTTGGTTGATGTTGGCG+GGG - chr4_2:4349060-4349079 Msa0584590:five_prime_UTR 45.0%
CAAACATGTCTCCTCCAACA+TGG + chr4_2:4349191-4349210 None:intergenic 45.0%
ACTGCCATTCACCCAAGATA+AGG + chr4_2:4349359-4349378 None:intergenic 45.0%
TTATCTTGGGTGAATGGCAG+TGG - chr4_2:4349358-4349377 Msa0584590:five_prime_UTR 45.0%
GATCATGTATTGGACCCAGA+AGG - chr4_2:4349474-4349493 Msa0584590:five_prime_UTR 45.0%
GTCAAATGCTATCCCAGTGT+CGG + chr4_2:4349514-4349533 None:intergenic 45.0%
AGCTATGATTCATGCATGGG+GGG - chr4_2:4349840-4349859 Msa0584590:five_prime_UTR 45.0%
CTGCTATCTGATCTGCTGAT+GGG + chr4_2:4349876-4349895 None:intergenic 45.0%
TCTGCTATCTGATCTGCTGA+TGG + chr4_2:4349877-4349896 None:intergenic 45.0%
!!! TATTTTTTATTTTTTTTGAA+AGG - chr4_2:4342081-4342100 Msa0584590:three_prime_UTR 5.0%
!!! ATTTTTTATTTTTTTTGAAA+GGG - chr4_2:4342082-4342101 Msa0584590:three_prime_UTR 5.0%
!! ATTAATTTATGATAAAAAAA+AGG + chr4_2:4346505-4346524 None:intergenic 5.0%
!! TTAATTAAATTATGTAATTT+AGG + chr4_2:4347455-4347474 None:intergenic 5.0%
!!! TTATAAATTTTTTTATATAC+AGG + chr4_2:4347686-4347705 None:intergenic 5.0%
!!! AATATAAGTAAATTTTAATA+TGG - chr4_2:4348426-4348445 Msa0584590:intron 5.0%
GGGAAGATGGACATGGACAA+TGG + chr4_2:4341981-4342000 None:intergenic 50.0%
GTTCTCAGGGAAGATGGACA+TGG + chr4_2:4341988-4342007 None:intergenic 50.0%
ATGGCCAGGATGTAATGGCA+CGG + chr4_2:4342544-4342563 None:intergenic 50.0%
! TGTGTGTTGGGTGCCATCAA+TGG + chr4_2:4342563-4342582 None:intergenic 50.0%
GGCACCATGCCATTAGATCA+GGG + chr4_2:4342618-4342637 None:intergenic 50.0%
TGGCACCATGCCATTAGATC+AGG + chr4_2:4342619-4342638 None:intergenic 50.0%
AAAACGTGGCAGATGGAGTG+TGG + chr4_2:4343303-4343322 None:intergenic 50.0%
GATGATTCAAGTGAGGGGTG+AGG + chr4_2:4343446-4343465 None:intergenic 50.0%
!! CAGGGTTAGTATTGGTCCAG+TGG + chr4_2:4343804-4343823 None:intergenic 50.0%
! TGGGAAGGCAGGGTTAGTAT+TGG + chr4_2:4343812-4343831 None:intergenic 50.0%
CTAGCTGAGGTTCGTGTTCA+TGG - chr4_2:4345936-4345955 Msa0584590:intron 50.0%
TAAGTGGGAGGGACCAAAAC+GGG + chr4_2:4346118-4346137 None:intergenic 50.0%
!!! CCCCTATTTTTACCTCGTCG+TGG + chr4_2:4346443-4346462 None:intergenic 50.0%
GTCCCACAGGGTTGCAAAAA+TGG + chr4_2:4346705-4346724 None:intergenic 50.0%
GGAACTATCTTGGTCCCACA+GGG + chr4_2:4346717-4346736 None:intergenic 50.0%
TGGAACTATCTTGGTCCCAC+AGG + chr4_2:4346718-4346737 None:intergenic 50.0%
AAGATGGGGCTCTACTTTGG+TGG + chr4_2:4346777-4346796 None:intergenic 50.0%
GACCGCTATCAAGAGAGAGA+TGG + chr4_2:4347081-4347100 None:intergenic 50.0%
AATGACGTCAGTTCTCCGGA+AGG + chr4_2:4347139-4347158 None:intergenic 50.0%
ACCGACACATGTTCAGCAAG+AGG + chr4_2:4347424-4347443 None:intergenic 50.0%
!! TCTGCCACCGTTTTGATGTC+AGG + chr4_2:4347527-4347546 None:intergenic 50.0%
! AGGTTATCCCACGTGTCACT+TGG - chr4_2:4347720-4347739 Msa0584590:intron 50.0%
TTATTGACCAGGGTGTGAGC+AGG - chr4_2:4348488-4348507 Msa0584590:five_prime_UTR 50.0%
CAAGCCGTAGAGAATTTCCC+CGG + chr4_2:4348758-4348777 None:intergenic 50.0%
TAGCGGTGCAAACCATACCT+TGG + chr4_2:4348987-4349006 None:intergenic 50.0%
TGCACCGCTAGAATTGTGTC+GGG - chr4_2:4348997-4349016 Msa0584590:five_prime_UTR 50.0%
GATGGTATCACCCATGTTGG+AGG - chr4_2:4349177-4349196 Msa0584590:five_prime_UTR 50.0%
! GGCAGTGGATTCTTCATGAC+TGG - chr4_2:4349373-4349392 Msa0584590:five_prime_UTR 50.0%
!! GCTATCCCAGTGTCGGTAAA+TGG + chr4_2:4349507-4349526 None:intergenic 50.0%
! ATGTTGCTTGCTCACAACGC+TGG - chr4_2:4349537-4349556 Msa0584590:five_prime_UTR 50.0%
TGCTCTGCCATGCATCATTG+AGG - chr4_2:4349641-4349660 Msa0584590:five_prime_UTR 50.0%
GGGAATGCCTCAATGATGCA+TGG + chr4_2:4349651-4349670 None:intergenic 50.0%
TATGATTCATGCATGGGGGG+AGG - chr4_2:4349843-4349862 Msa0584590:five_prime_UTR 50.0%
CACACACTTGGGGCAATGTG+TGG - chr4_2:4342592-4342611 Msa0584590:intron 55.0%
GTGGCCCTGATCTAATGGCA+TGG - chr4_2:4342611-4342630 Msa0584590:intron 55.0%
GCATAACTATAGGACGGGGG+TGG + chr4_2:4342639-4342658 None:intergenic 55.0%
GGCAGAAGGTGGTGAGTGTT+TGG + chr4_2:4343505-4343524 None:intergenic 55.0%
CTCACCACCTTCTGCCTTCA+AGG - chr4_2:4343509-4343528 Msa0584590:intron 55.0%
CTACGCACCTTGAAGGCAGA+AGG + chr4_2:4343519-4343538 None:intergenic 55.0%
CCAGTGGCCATAAAAGCCAC+TGG + chr4_2:4343788-4343807 None:intergenic 55.0%
! CCAGTGGCTTTTATGGCCAC+TGG - chr4_2:4343785-4343804 Msa0584590:intron 55.0%
CCGGAAGGAGGGAGTAGAAA+GGG + chr4_2:4347124-4347143 None:intergenic 55.0%
CCCTTTCTACTCCCTCCTTC+CGG - chr4_2:4347121-4347140 Msa0584590:intron 55.0%
TCCGGAAGGAGGGAGTAGAA+AGG + chr4_2:4347125-4347144 None:intergenic 55.0%
ACGTCAGTTCTCCGGAAGGA+GGG + chr4_2:4347135-4347154 None:intergenic 55.0%
TCTTCTTCCTGCTCACACCC+TGG + chr4_2:4348498-4348517 None:intergenic 55.0%
GCACCGCTAGAATTGTGTCG+GGG - chr4_2:4348998-4349017 Msa0584590:five_prime_UTR 55.0%
CAGCCCCGACACAATTCTAG+CGG + chr4_2:4349004-4349023 None:intergenic 55.0%
TGTGTCGGGGCTGTTATTGC+TGG - chr4_2:4349011-4349030 Msa0584590:five_prime_UTR 55.0%
! GGTTGATGTTGGCGGGGTAT+CGG - chr4_2:4349066-4349085 Msa0584590:five_prime_UTR 55.0%
AGGGCCGTTGAAACCACATG+AGG + chr4_2:4349152-4349171 None:intergenic 55.0%
TTGCTTGCTCACAACGCTGG+TGG - chr4_2:4349540-4349559 Msa0584590:five_prime_UTR 55.0%
! GGCACCGTGCCATTACATCC+TGG - chr4_2:4342537-4342556 Msa0584590:CDS 60.0%
! GTTGGGTGCCATCAATGGCC+AGG + chr4_2:4342558-4342577 None:intergenic 60.0%
CGCACCTTGAAGGCAGAAGG+TGG + chr4_2:4343516-4343535 None:intergenic 60.0%
GACGTCAGTTCTCCGGAAGG+AGG + chr4_2:4347136-4347155 None:intergenic 60.0%
!! TGATGTTGGCGGGGTATCGG+AGG - chr4_2:4349069-4349088 Msa0584590:five_prime_UTR 60.0%
TCATGCATGGGGGGAGGCTT+TGG - chr4_2:4349849-4349868 Msa0584590:five_prime_UTR 60.0%
GTGGGAGGGACCAAAACGGG+TGG + chr4_2:4346115-4346134 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 4341918 4350048 4341918 ID=Msa0584590;Name=Msa0584590
chr4_2 mRNA 4341918 4350048 4341918 ID=Msa0584590-mRNA-1;Parent=Msa0584590;Name=Msa0584590-mRNA-1;_AED=0.09;_eAED=0.09;_QI=2292|1|1|1|1|0.66|3|371|121
chr4_2 exon 4341918 4342588 4341918 ID=Msa0584590-mRNA-1:exon:1135;Parent=Msa0584590-mRNA-1
chr4_2 exon 4342723 4343467 4342723 ID=Msa0584590-mRNA-1:exon:1134;Parent=Msa0584590-mRNA-1
chr4_2 exon 4348436 4350048 4348436 ID=Msa0584590-mRNA-1:exon:1133;Parent=Msa0584590-mRNA-1
chr4_2 five_prime_UTR 4348436 4350048 4348436 ID=Msa0584590-mRNA-1:five_prime_utr;Parent=Msa0584590-mRNA-1
chr4_2 five_prime_UTR 4342789 4343467 4342789 ID=Msa0584590-mRNA-1:five_prime_utr;Parent=Msa0584590-mRNA-1
chr4_2 CDS 4342723 4342788 4342723 ID=Msa0584590-mRNA-1:cds;Parent=Msa0584590-mRNA-1
chr4_2 CDS 4342289 4342588 4342289 ID=Msa0584590-mRNA-1:cds;Parent=Msa0584590-mRNA-1
chr4_2 three_prime_UTR 4341918 4342288 4341918 ID=Msa0584590-mRNA-1:three_prime_utr;Parent=Msa0584590-mRNA-1
Gene Sequence

>Msa0584590

ATGGTATCACCCATGTTGGAGGAGACATGTTTGTGTCAGTTCCTAGTGCTGATGCTATTTATGAAGTGGATTCTTCATGACTGGAGCGACGACCATTGCATAAAGATATTGAAGAATTGTAGAAAGGCAATACCAGAGAAAACAGGAAAGGTGATCATTGTGGATCATGTATTGGACCCAGAAGGAAATGAACCATTTACCGACACTGGGATAGCATTTGACATGATGTTGCTTGCTCACAACGCTGGTGGTAAAGAAAGAACTGAAGAGAACTGGAAATACTTATTCAACGAGACAGGATTCCCTCGTTACAACATCATCAAAATCAATGCTCTGCCATGCATCATTGAGGCATTCCCAGTCTAA
Protein sequence

>Msa0584590

MVSPMLEETCLCQFLVLMLFMKWILHDWSDDHCIKILKNCRKAIPEKTGKVIIVDHVLDPEGNEPFTDTGIAFDMMLLAHNAGGKERTEENWKYLFNETGFPRYNIIKINALPCIIEAFPV*