Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1019380 | XP_024625866.2 | 93.478 | 138 | 9 | 0 | 1 | 138 | 192 | 329 | 3.43e-86 | 265 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1019380 | sp|Q9SV68|QORH_ARATH | 73.723 | 137 | 36 | 0 | 1 | 137 | 192 | 328 | 6.88e-69 | 213 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1019380 | A0A396GZ73 | 93.478 | 138 | 9 | 0 | 1 | 138 | 192 | 329 | 1.64e-86 | 265 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0007810 | Msa1019380 | 0.802076 | 6.659766e-49 | -8.615850e-47 |
Msa0037040 | Msa1019380 | 0.820694 | 5.990445e-53 | -8.615850e-47 |
Msa0049670 | Msa1019380 | 0.808392 | 3.167816e-50 | -8.615850e-47 |
Msa0053360 | Msa1019380 | 0.807097 | 5.969604e-50 | -8.615850e-47 |
Msa0056230 | Msa1019380 | 0.803582 | 3.255001e-49 | -8.615850e-47 |
Msa0099090 | Msa1019380 | 0.804089 | 2.553661e-49 | -8.615850e-47 |
Msa0622800 | Msa1019380 | 0.800066 | 1.715752e-48 | -8.615850e-47 |
Msa0625550 | Msa1019380 | 0.807402 | 5.145340e-50 | -8.615850e-47 |
Msa0625900 | Msa1019380 | 0.802177 | 6.348813e-49 | -8.615850e-47 |
Msa0654400 | Msa1019380 | 0.808730 | 2.683284e-50 | -8.615850e-47 |
Msa0654500 | Msa1019380 | 0.814017 | 1.908893e-51 | -8.615850e-47 |
Msa0656570 | Msa1019380 | 0.801559 | 8.504572e-49 | -8.615850e-47 |
Msa0663690 | Msa1019380 | 0.801870 | 7.340798e-49 | -8.615850e-47 |
Msa0677250 | Msa1019380 | 0.819608 | 1.062263e-52 | -8.615850e-47 |
Msa0690100 | Msa1019380 | 0.807226 | 5.604349e-50 | -8.615850e-47 |
Msa0701800 | Msa1019380 | 0.809261 | 2.064971e-50 | -8.615850e-47 |
Msa0712580 | Msa1019380 | 0.812969 | 3.244956e-51 | -8.615850e-47 |
Msa0714230 | Msa1019380 | 0.800509 | 1.394019e-48 | -8.615850e-47 |
Msa0730250 | Msa1019380 | 0.801860 | 7.376848e-49 | -8.615850e-47 |
Msa0742690 | Msa1019380 | 0.819145 | 1.354225e-52 | -8.615850e-47 |
Msa0745630 | Msa1019380 | 0.804586 | 2.012303e-49 | -8.615850e-47 |
Msa0770540 | Msa1019380 | 0.806641 | 7.451843e-50 | -8.615850e-47 |
Msa0779830 | Msa1019380 | 0.809471 | 1.861870e-50 | -8.615850e-47 |
Msa0786600 | Msa1019380 | 0.805682 | 1.186248e-49 | -8.615850e-47 |
Msa0795910 | Msa1019380 | 0.800243 | 1.579027e-48 | -8.615850e-47 |
Msa0822680 | Msa1019380 | 0.812082 | 5.071013e-51 | -8.615850e-47 |
Msa0827560 | Msa1019380 | 0.809724 | 1.642815e-50 | -8.615850e-47 |
Msa0829770 | Msa1019380 | 0.831528 | 1.586434e-55 | -8.615850e-47 |
Msa0131230 | Msa1019380 | 0.805831 | 1.104018e-49 | -8.615850e-47 |
Msa0138340 | Msa1019380 | 0.801483 | 8.814283e-49 | -8.615850e-47 |
Msa0138380 | Msa1019380 | 0.819203 | 1.313746e-52 | -8.615850e-47 |
Msa0170690 | Msa1019380 | 0.802936 | 4.427362e-49 | -8.615850e-47 |
Msa0177180 | Msa1019380 | 0.801804 | 7.575123e-49 | -8.615850e-47 |
Msa0183960 | Msa1019380 | 0.815379 | 9.528784e-52 | -8.615850e-47 |
Msa0186400 | Msa1019380 | 0.810676 | 1.023911e-50 | -8.615850e-47 |
Msa0190470 | Msa1019380 | 0.808118 | 3.623507e-50 | -8.615850e-47 |
Msa0194420 | Msa1019380 | 0.800200 | 1.611258e-48 | -8.615850e-47 |
Msa0208040 | Msa1019380 | 0.801394 | 9.193915e-49 | -8.615850e-47 |
Msa0228360 | Msa1019380 | 0.810272 | 1.251778e-50 | -8.615850e-47 |
Msa0232170 | Msa1019380 | 0.801111 | 1.050314e-48 | -8.615850e-47 |
Msa0232660 | Msa1019380 | 0.832135 | 1.123695e-55 | -8.615850e-47 |
Msa0370350 | Msa1019380 | 0.815006 | 1.153292e-51 | -8.615850e-47 |
Msa0375930 | Msa1019380 | 0.803303 | 3.717713e-49 | -8.615850e-47 |
Msa0417850 | Msa1019380 | 0.805786 | 1.128169e-49 | -8.615850e-47 |
Msa0424570 | Msa1019380 | 0.802422 | 5.652575e-49 | -8.615850e-47 |
Msa0427890 | Msa1019380 | 0.800284 | 1.548859e-48 | -8.615850e-47 |
Msa0450890 | Msa1019380 | 0.808745 | 2.662594e-50 | -8.615850e-47 |
Msa0457070 | Msa1019380 | 0.802684 | 4.991231e-49 | -8.615850e-47 |
Msa0469770 | Msa1019380 | 0.800642 | 1.309663e-48 | -8.615850e-47 |
Msa0481580 | Msa1019380 | 0.815679 | 8.169243e-52 | -8.615850e-47 |
Msa0998940 | Msa1019380 | 0.803254 | 3.805872e-49 | -8.615850e-47 |
Msa1011140 | Msa1019380 | 0.801513 | 8.692862e-49 | -8.615850e-47 |
Msa1019370 | Msa1019380 | 0.836129 | 1.121582e-56 | -8.615850e-47 |
Msa1019380 | Msa1032790 | 0.806002 | 1.016185e-49 | -8.615850e-47 |
Msa1019380 | Msa1039150 | 0.831673 | 1.460577e-55 | -8.615850e-47 |
Msa1019380 | Msa1042420 | 0.803547 | 3.309081e-49 | -8.615850e-47 |
Msa1019380 | Msa1078210 | 0.824051 | 9.949352e-54 | -8.615850e-47 |
Msa1019380 | Msa1083660 | 0.828616 | 8.140725e-55 | -8.615850e-47 |
Msa1019380 | Msa1112210 | 0.800703 | 1.272347e-48 | -8.615850e-47 |
Msa1019380 | Msa1123440 | 0.822972 | 1.779831e-53 | -8.615850e-47 |
Msa1019380 | Msa1147600 | 0.806332 | 8.658981e-50 | -8.615850e-47 |
Msa1019380 | Msa1156530 | 0.801410 | 9.122465e-49 | -8.615850e-47 |
Msa1019380 | Msa1191530 | 0.802509 | 5.423820e-49 | -8.615850e-47 |
Msa1019380 | Msa1194480 | 0.819747 | 9.872697e-53 | -8.615850e-47 |
Msa1019380 | Msa1199540 | 0.809472 | 1.860695e-50 | -8.615850e-47 |
Msa1019380 | Msa1219530 | 0.807389 | 5.177549e-50 | -8.615850e-47 |
Msa1019380 | Msa1240240 | 0.802504 | 5.436460e-49 | -8.615850e-47 |
Msa1019380 | Msa1266120 | 0.800402 | 1.465794e-48 | -8.615850e-47 |
Msa1019380 | Msa1277890 | 0.803697 | 3.080965e-49 | -8.615850e-47 |
Msa1019380 | Msa1279200 | 0.808576 | 2.893539e-50 | -8.615850e-47 |
Msa1019380 | Msa1320660 | 0.830941 | 2.211167e-55 | -8.615850e-47 |
Msa1019380 | Msa1328680 | 0.807737 | 4.367998e-50 | -8.615850e-47 |
Msa1019380 | Msa1352840 | 0.800818 | 1.205418e-48 | -8.615850e-47 |
Msa1019380 | Msa1360070 | 0.809853 | 1.541089e-50 | -8.615850e-47 |
Msa1019380 | Msa1371540 | 0.805975 | 1.029479e-49 | -8.615850e-47 |
Msa1019380 | Msa1373310 | 0.822489 | 2.305438e-53 | -8.615850e-47 |
Msa1019380 | Msa1374210 | 0.810092 | 1.368904e-50 | -8.615850e-47 |
Msa1019380 | Msa1381300 | 0.834371 | 3.115011e-56 | -8.615850e-47 |
Msa1019380 | Msa1381870 | 0.808581 | 2.886637e-50 | -8.615850e-47 |
Msa1019380 | Msa1386180 | 0.816467 | 5.449159e-52 | -8.615850e-47 |
Msa1019380 | Msa1392570 | 0.829032 | 6.458863e-55 | -8.615850e-47 |
Msa1019380 | Msa1409360 | 0.809000 | 2.348377e-50 | -8.615850e-47 |
Msa1019380 | Msa1448410 | 0.827180 | 1.803801e-54 | -8.615850e-47 |
Msa1019380 | Msa1451200 | 0.817557 | 3.100819e-52 | -8.615850e-47 |
Msa1019380 | Msa1459130 | 0.812533 | 4.042092e-51 | -8.615850e-47 |
Msa0240460 | Msa1019380 | 0.821069 | 4.912514e-53 | -8.615850e-47 |
Msa0321180 | Msa1019380 | 0.800117 | 1.675552e-48 | -8.615850e-47 |
Msa0321200 | Msa1019380 | 0.801570 | 8.461650e-49 | -8.615850e-47 |
Msa0362440 | Msa1019380 | 0.805071 | 1.593086e-49 | -8.615850e-47 |
Msa0483090 | Msa1019380 | 0.831489 | 1.621310e-55 | -8.615850e-47 |
Msa0516000 | Msa1019380 | 0.804405 | 2.194778e-49 | -8.615850e-47 |
Msa0523400 | Msa1019380 | 0.800893 | 1.164076e-48 | -8.615850e-47 |
Msa0527210 | Msa1019380 | 0.800954 | 1.130968e-48 | -8.615850e-47 |
Msa0538050 | Msa1019380 | 0.806635 | 7.475897e-50 | -8.615850e-47 |
Msa0559440 | Msa1019380 | 0.820720 | 5.909967e-53 | -8.615850e-47 |
Msa0559640 | Msa1019380 | 0.815632 | 8.369820e-52 | -8.615850e-47 |
Msa0577960 | Msa1019380 | 0.804939 | 1.698001e-49 | -8.615850e-47 |
Msa0580410 | Msa1019380 | 0.801004 | 1.104789e-48 | -8.615850e-47 |
Msa0862750 | Msa1019380 | 0.808936 | 2.423508e-50 | -8.615850e-47 |
Msa0866510 | Msa1019380 | 0.804779 | 1.833654e-49 | -8.615850e-47 |
Msa0869320 | Msa1019380 | 0.802852 | 4.608825e-49 | -8.615850e-47 |
Msa0872800 | Msa1019380 | 0.802826 | 4.666559e-49 | -8.615850e-47 |
Msa0873070 | Msa1019380 | 0.800523 | 1.384775e-48 | -8.615850e-47 |
Msa0876030 | Msa1019380 | 0.802704 | 4.945158e-49 | -8.615850e-47 |
Msa0879940 | Msa1019380 | 0.805436 | 1.336172e-49 | -8.615850e-47 |
Msa0899080 | Msa1019380 | 0.825407 | 4.767963e-54 | -8.615850e-47 |
Msa0906100 | Msa1019380 | 0.829980 | 3.798603e-55 | -8.615850e-47 |
Msa0934290 | Msa1019380 | 0.811639 | 6.329651e-51 | -8.615850e-47 |
Msa0938150 | Msa1019380 | 0.815417 | 9.346810e-52 | -8.615850e-47 |
Msa0961200 | Msa1019380 | 0.816333 | 5.836321e-52 | -8.615850e-47 |
Msa0971780 | Msa1019380 | 0.809998 | 1.433733e-50 | -8.615850e-47 |
Msa0975460 | Msa1019380 | 0.810076 | 1.379954e-50 | -8.615850e-47 |
Msa0978290 | Msa1019380 | 0.801799 | 7.591162e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1019380 | MtrunA17_Chr7g0235021 | 93.478 | 138 | 9 | 0 | 1 | 138 | 192 | 329 | 3.15e-90 | 265 |
Msa1019380 | MtrunA17_Chr4g0015051 | 67.883 | 137 | 44 | 0 | 1 | 137 | 193 | 329 | 2.40e-63 | 196 |
Msa1019380 | MtrunA17_Chr4g0015091 | 67.153 | 137 | 45 | 0 | 1 | 137 | 192 | 328 | 7.37e-63 | 195 |
Msa1019380 | MtrunA17_Chr4g0014931 | 66.423 | 137 | 46 | 0 | 1 | 137 | 193 | 329 | 9.78e-60 | 187 |
Msa1019380 | MtrunA17_Chr4g0014971 | 65.693 | 137 | 47 | 0 | 1 | 137 | 193 | 329 | 4.86e-59 | 185 |
Msa1019380 | MtrunA17_Chr4g0014691 | 63.504 | 137 | 50 | 0 | 1 | 137 | 192 | 328 | 8.70e-59 | 184 |
Msa1019380 | MtrunA17_Chr4g0014541 | 63.504 | 137 | 50 | 0 | 1 | 137 | 192 | 328 | 1.10e-58 | 184 |
Msa1019380 | MtrunA17_Chr4g0014951 | 64.964 | 137 | 48 | 0 | 1 | 137 | 193 | 329 | 3.89e-57 | 180 |
Msa1019380 | MtrunA17_Chr4g0015001 | 62.774 | 137 | 51 | 0 | 1 | 137 | 94 | 230 | 5.76e-57 | 177 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1019380 | AT4G13010.1 | 73.723 | 137 | 36 | 0 | 1 | 137 | 192 | 328 | 6.99e-70 | 213 |
Find 29 sgRNAs with CRISPR-Local
Find 29 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCCTTAGCTAGAGGAAATT+TGG | 0.203726 | 7_1:-40989483 | None:intergenic |
AGTATTGATGGTCATGCAAC+TGG | 0.350063 | 7_1:+40989524 | Msa1019380:CDS |
CTCTTTAATTCCACACCAAT+TGG | 0.361493 | 7_1:-40989203 | None:intergenic |
TTACCATTCGTGTTCAAGTT+AGG | 0.361630 | 7_1:-40989293 | None:intergenic |
AACTGAAGATCCTTACCCTT+TGG | 0.395500 | 7_1:-40989413 | None:intergenic |
GTGGAATTAAAGAGTCCTTC+TGG | 0.426954 | 7_1:+40989212 | Msa1019380:CDS |
GCTTCTAATTCCAAAGGGTA+AGG | 0.460785 | 7_1:+40989403 | Msa1019380:CDS |
GGTTGGTCTAAGAGTATTGA+TGG | 0.460981 | 7_1:+40989512 | Msa1019380:CDS |
ATTGACTATAAGACACCAAT+TGG | 0.468885 | 7_1:+40989188 | Msa1019380:CDS |
ATGGAAATCGTCAAAAGCTT+AGG | 0.472847 | 7_1:+40989152 | Msa1019380:CDS |
CCCTTTGGAATTAGAAGCAA+AGG | 0.479238 | 7_1:-40989398 | None:intergenic |
CTTGTTGATTTGATTAAGCA+AGG | 0.495471 | 7_1:+40989437 | Msa1019380:CDS |
GCCTTTGCTTCTAATTCCAA+AGG | 0.500098 | 7_1:+40989397 | Msa1019380:CDS |
CACAAGTTGTTTCTTCGAGA+AGG | 0.501978 | 7_1:-40989375 | None:intergenic |
CCTCTAGCTAAGGCTGAAGA+TGG | 0.513384 | 7_1:+40989491 | Msa1019380:CDS |
CTCCAAATTTCCTCTAGCTA+AGG | 0.534188 | 7_1:+40989481 | Msa1019380:CDS |
CCTTTGCTTCTAATTCCAAA+GGG | 0.536074 | 7_1:+40989398 | Msa1019380:CDS |
GAGCCTAACTTGAACACGAA+TGG | 0.537643 | 7_1:+40989290 | Msa1019380:CDS |
TAGCTAAGGCTGAAGATGGT+TGG | 0.558067 | 7_1:+40989495 | Msa1019380:CDS |
GCATCATATTTCTTACCAGA+AGG | 0.581763 | 7_1:-40989227 | None:intergenic |
GTCAACATTGAAGTAGAGCT+AGG | 0.594837 | 7_1:-40989332 | None:intergenic |
TAACTTGAACACGAATGGTA+AGG | 0.595964 | 7_1:+40989295 | Msa1019380:CDS |
CAAAAGCTTAGGAGCTGATG+AGG | 0.597537 | 7_1:+40989163 | Msa1019380:CDS |
ATTGTGCAACGGATATTGCA+TGG | 0.613154 | 7_1:+40989258 | Msa1019380:CDS |
CCATCTTCAGCCTTAGCTAG+AGG | 0.614800 | 7_1:-40989491 | None:intergenic |
TGGTAAGAAATATGATGCAG+TGG | 0.629719 | 7_1:+40989232 | Msa1019380:CDS |
CTATAAGACACCAATTGGTG+TGG | 0.632516 | 7_1:+40989193 | Msa1019380:CDS |
GTATTGATGGTCATGCAACT+GGG | 0.661439 | 7_1:+40989525 | Msa1019380:CDS |
TGCAGTGGTTCATTGTGCAA+CGG | 0.675224 | 7_1:+40989247 | Msa1019380:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ATTGACTATAAGACACCAAT+TGG | + | chr7_1:40989188-40989207 | Msa1019380:CDS | 30.0% | |
!! | CTTGTTGATTTGATTAAGCA+AGG | + | chr7_1:40989437-40989456 | Msa1019380:CDS | 30.0% |
ATGGAAATCGTCAAAAGCTT+AGG | + | chr7_1:40989152-40989171 | Msa1019380:CDS | 35.0% | |
CTCTTTAATTCCACACCAAT+TGG | - | chr7_1:40989206-40989225 | None:intergenic | 35.0% | |
GCATCATATTTCTTACCAGA+AGG | - | chr7_1:40989230-40989249 | None:intergenic | 35.0% | |
TGGTAAGAAATATGATGCAG+TGG | + | chr7_1:40989232-40989251 | Msa1019380:CDS | 35.0% | |
! | TTACCATTCGTGTTCAAGTT+AGG | - | chr7_1:40989296-40989315 | None:intergenic | 35.0% |
TAACTTGAACACGAATGGTA+AGG | + | chr7_1:40989295-40989314 | Msa1019380:CDS | 35.0% | |
CCTTTGCTTCTAATTCCAAA+GGG | + | chr7_1:40989398-40989417 | Msa1019380:CDS | 35.0% | |
CTATAAGACACCAATTGGTG+TGG | + | chr7_1:40989193-40989212 | Msa1019380:CDS | 40.0% | |
GTGGAATTAAAGAGTCCTTC+TGG | + | chr7_1:40989212-40989231 | Msa1019380:CDS | 40.0% | |
ATTGTGCAACGGATATTGCA+TGG | + | chr7_1:40989258-40989277 | Msa1019380:CDS | 40.0% | |
GTCAACATTGAAGTAGAGCT+AGG | - | chr7_1:40989335-40989354 | None:intergenic | 40.0% | |
!! | CACAAGTTGTTTCTTCGAGA+AGG | - | chr7_1:40989378-40989397 | None:intergenic | 40.0% |
GCCTTTGCTTCTAATTCCAA+AGG | + | chr7_1:40989397-40989416 | Msa1019380:CDS | 40.0% | |
!! | CCCTTTGGAATTAGAAGCAA+AGG | - | chr7_1:40989401-40989420 | None:intergenic | 40.0% |
GCTTCTAATTCCAAAGGGTA+AGG | + | chr7_1:40989403-40989422 | Msa1019380:CDS | 40.0% | |
AACTGAAGATCCTTACCCTT+TGG | - | chr7_1:40989416-40989435 | None:intergenic | 40.0% | |
CTCCAAATTTCCTCTAGCTA+AGG | + | chr7_1:40989481-40989500 | Msa1019380:CDS | 40.0% | |
AGCCTTAGCTAGAGGAAATT+TGG | - | chr7_1:40989486-40989505 | None:intergenic | 40.0% | |
!! | GGTTGGTCTAAGAGTATTGA+TGG | + | chr7_1:40989512-40989531 | Msa1019380:CDS | 40.0% |
!! | AGTATTGATGGTCATGCAAC+TGG | + | chr7_1:40989524-40989543 | Msa1019380:CDS | 40.0% |
! | GTATTGATGGTCATGCAACT+GGG | + | chr7_1:40989525-40989544 | Msa1019380:CDS | 40.0% |
CAAAAGCTTAGGAGCTGATG+AGG | + | chr7_1:40989163-40989182 | Msa1019380:CDS | 45.0% | |
TGCAGTGGTTCATTGTGCAA+CGG | + | chr7_1:40989247-40989266 | Msa1019380:CDS | 45.0% | |
GAGCCTAACTTGAACACGAA+TGG | + | chr7_1:40989290-40989309 | Msa1019380:CDS | 45.0% | |
TAGCTAAGGCTGAAGATGGT+TGG | + | chr7_1:40989495-40989514 | Msa1019380:CDS | 45.0% | |
CCATCTTCAGCCTTAGCTAG+AGG | - | chr7_1:40989494-40989513 | None:intergenic | 50.0% | |
CCTCTAGCTAAGGCTGAAGA+TGG | + | chr7_1:40989491-40989510 | Msa1019380:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 40989152 | 40989568 | 40989152 | ID=Msa1019380;Name=Msa1019380 |
chr7_1 | mRNA | 40989152 | 40989568 | 40989152 | ID=Msa1019380-mRNA-1;Parent=Msa1019380;Name=Msa1019380-mRNA-1;_AED=0.40;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|138 |
chr7_1 | exon | 40989152 | 40989568 | 40989152 | ID=Msa1019380-mRNA-1:exon:7956;Parent=Msa1019380-mRNA-1 |
chr7_1 | CDS | 40989152 | 40989568 | 40989152 | ID=Msa1019380-mRNA-1:cds;Parent=Msa1019380-mRNA-1 |
Gene Sequence |
Protein sequence |