AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1352840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352840 MtrunA17_Chr7g0236891 81.287 171 6 1 1 145 1 171 1.37e-82 240
Msa1352840 MtrunA17_Chr3g0094861 30.769 156 76 2 16 145 169 318 2.67e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1352840 AT3G17609.2 40.769 130 46 3 39 141 22 147 3.11e-20 81.6
Msa1352840 AT3G17609.3 40.496 121 41 3 48 141 2 118 2.22e-17 73.2
Msa1352840 AT3G17609.1 46.667 90 21 2 79 141 44 133 1.03e-16 72.0
Msa1352840 AT3G17609.4 46.667 90 21 2 79 141 43 132 1.09e-16 72.0

Find 63 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATTGTGTAATTGATTA+AGG 0.121343 tig0012839:+127024 Msa1352840:three_prime_UTR
ATATAAGGTTCTTCTAAATT+AGG 0.169445 tig0012839:+126864 Msa1352840:three_prime_UTR
CTTCCACGGCGGCGCTTGCC+TGG 0.176870 tig0012839:-126114 None:intergenic
TGAGATACGTTCTTCTAAAT+TGG 0.194375 tig0012839:-126635 None:intergenic
CTTCATCTTCATCTTCTTCA+TGG 0.213050 tig0012839:+124946 Msa1352840:CDS
ATTTCTGAACCAAAACTCTT+AGG 0.310666 tig0012839:+124709 None:intergenic
TCATTGCTCTCATCAACTTT+GGG 0.320674 tig0012839:-126828 None:intergenic
GTGATGGGGCCTAAGAGTTT+TGG 0.339758 tig0012839:-124718 None:intergenic
TTCATTGCTCTCATCAACTT+TGG 0.343653 tig0012839:-126829 None:intergenic
TATAAGGTTCTTCTAAATTA+GGG 0.349631 tig0012839:+126865 Msa1352840:three_prime_UTR
TGCTCCCGGGGCACTGGTTA+AGG 0.356514 tig0012839:+127061 Msa1352840:three_prime_UTR
TAAATTGTGTAATTGATTAA+GGG 0.359378 tig0012839:+127025 Msa1352840:three_prime_UTR
GAAGGTTAGACAGGGATATA+AGG 0.362469 tig0012839:+126849 Msa1352840:exon
CATTGTGTACCTTCCACATC+TGG 0.376399 tig0012839:-126006 None:intergenic
TACTGGTGTTCATAATGAAT+TGG 0.380711 tig0012839:-126961 None:intergenic
CTTCTAAATTAGGGCATTGT+GGG 0.383047 tig0012839:+126874 Msa1352840:three_prime_UTR
TTCCTTCATCTCAGTATCAT+TGG 0.395557 tig0012839:-124904 None:intergenic
TGATTAAGGGTTGTGTTAAC+CGG 0.397964 tig0012839:+127038 Msa1352840:three_prime_UTR
TCGGAGCATGGCGTTCTCAT+TGG 0.400151 tig0012839:-126665 None:intergenic
TTCCACGGCGGCGCTTGCCT+GGG 0.402233 tig0012839:-126113 None:intergenic
GTTGTGTTAACCGGTGCTCC+CGG 0.404620 tig0012839:+127047 Msa1352840:three_prime_UTR
ATGAAGGAAGCTGCAACAAC+TGG 0.409191 tig0012839:+124918 Msa1352840:CDS
TTTGATTTGTTAACTCAGAA+TGG 0.409238 tig0012839:-126038 None:intergenic
CGTCTATGTTCCTTGTCTGC+AGG 0.409298 tig0012839:-126141 None:intergenic
CCTATGCCTCCACATAGATT+TGG 0.415132 tig0012839:+124981 Msa1352840:CDS
AACCGGTGCTCCCGGGGCAC+TGG 0.433020 tig0012839:+127055 Msa1352840:three_prime_UTR
CAACTTCAAGCAGGCTTCCC+AGG 0.438175 tig0012839:+126096 Msa1352840:CDS
TGTTACTTGAAATTTCTTTG+AGG 0.443146 tig0012839:+124832 Msa1352840:five_prime_UTR
TTGTGTTAACCGGTGCTCCC+GGG 0.453179 tig0012839:+127048 Msa1352840:three_prime_UTR
GAGAGCAATGAAGGTTAGAC+AGG 0.455193 tig0012839:+126840 Msa1352840:exon
CTTCATCTTCTTCATGGAGT+AGG 0.466765 tig0012839:+124952 Msa1352840:CDS
GTCTATGTTCCTTGTCTGCA+GGG 0.478530 tig0012839:-126140 None:intergenic
CGGTTACATTGCTTTGATTG+TGG 0.481791 tig0012839:-126068 None:intergenic
AACCAGTGCCCCGGGAGCAC+CGG 0.490537 tig0012839:-127057 None:intergenic
GTTAATGCACTTGCAATGTT+GGG 0.495633 tig0012839:-124784 None:intergenic
AGCCAATGATACTGAGATGA+AGG 0.496590 tig0012839:+124902 Msa1352840:CDS
TGTCTGCAGGGTTTCTTCCA+CGG 0.500164 tig0012839:-126128 None:intergenic
AAAGTTGATGAGAGCAATGA+AGG 0.515891 tig0012839:+126831 Msa1352840:CDS
TTATGTTACCTTTCGGAGCA+TGG 0.517776 tig0012839:-126677 None:intergenic
TCTTCTAAATTAGGGCATTG+TGG 0.522870 tig0012839:+126873 Msa1352840:three_prime_UTR
ATTGTCTTTGAAAGAGTGAT+GGG 0.523947 tig0012839:-124733 None:intergenic
CCAAATCTATGTGGAGGCAT+AGG 0.526031 tig0012839:-124981 None:intergenic
TGTTAATGCACTTGCAATGT+TGG 0.535125 tig0012839:-124785 None:intergenic
CATTGTCTTTGAAAGAGTGA+TGG 0.546775 tig0012839:-124734 None:intergenic
GATACCTTAACCAGTGCCCC+GGG 0.552240 tig0012839:-127065 None:intergenic
TGGAAGAAACCCTGCAGACA+AGG 0.552255 tig0012839:+126131 Msa1352840:CDS
TGTGTTAACCGGTGCTCCCG+GGG 0.554531 tig0012839:+127049 Msa1352840:three_prime_UTR
AGATACCTTAACCAGTGCCC+CGG 0.559775 tig0012839:-127066 None:intergenic
ACCGATGCTCAACTTCAAGC+AGG 0.560214 tig0012839:+126087 Msa1352840:CDS
CATGAAGAAGATGAAGATGA+AGG 0.570746 tig0012839:-124945 None:intergenic
AATCTATGTGGAGGCATAGG+AGG 0.581180 tig0012839:-124978 None:intergenic
GCCTGCTTGAAGTTGAGCAT+CGG 0.588947 tig0012839:-126088 None:intergenic
TTCCCAGGCAAGCGCCGCCG+TGG 0.603286 tig0012839:+126111 Msa1352840:CDS
TGAGAACGCCATGCTCCGAA+AGG 0.615500 tig0012839:+126669 Msa1352840:CDS
TTCTAAATTAGGGCATTGTG+GGG 0.623760 tig0012839:+126875 Msa1352840:three_prime_UTR
CACTTACCAAATCTATGTGG+AGG 0.634191 tig0012839:-124987 None:intergenic
TCTGTTCGAAGTTCCAGATG+TGG 0.639704 tig0012839:+125993 Msa1352840:CDS
TGACACTTACCAAATCTATG+TGG 0.640404 tig0012839:-124990 None:intergenic
CTGCAGGGTTTCTTCCACGG+CGG 0.647406 tig0012839:-126125 None:intergenic
TTCGAAGTTCCAGATGTGGA+AGG 0.651950 tig0012839:+125997 Msa1352840:CDS
ATAATAGTGGTACACATGTG+AGG 0.686831 tig0012839:-126910 None:intergenic
TTGTCTTTGAAAGAGTGATG+GGG 0.687323 tig0012839:-124732 None:intergenic
AGAGCAATGAAGGTTAGACA+GGG 0.702347 tig0012839:+126841 Msa1352840:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTAAATAAAAATTTAAC+GGG - tig0012839:125398-125417 None:intergenic 10.0%
!! ATTATAATTGTAATATGTAT+CGG - tig0012839:126344-126363 None:intergenic 10.0%
!! TTGTTAAATAAAAATTTAAC+GGG - tig0012839:125398-125417 None:intergenic 10.0%
!! ATTATAATTGTAATATGTAT+CGG - tig0012839:126344-126363 None:intergenic 10.0%
!! AAGAATATTAAGTATATTGT+TGG + tig0012839:125246-125265 Msa1352840:intron 15.0%
!! ATGTCAAATTAAAATTTGAA+GGG - tig0012839:125855-125874 None:intergenic 15.0%
!! AATGTCAAATTAAAATTTGA+AGG - tig0012839:125856-125875 None:intergenic 15.0%
!! TTAAATTGTGTAATTGATTA+AGG + tig0012839:127024-127043 Msa1352840:three_prime_UTR 15.0%
!! TAAATTGTGTAATTGATTAA+GGG + tig0012839:127025-127044 Msa1352840:three_prime_UTR 15.0%
!! AAGAATATTAAGTATATTGT+TGG + tig0012839:125246-125265 Msa1352840:intron 15.0%
!! ATGTCAAATTAAAATTTGAA+GGG - tig0012839:125855-125874 None:intergenic 15.0%
!! AATGTCAAATTAAAATTTGA+AGG - tig0012839:125856-125875 None:intergenic 15.0%
!! TTAAATTGTGTAATTGATTA+AGG + tig0012839:127024-127043 Msa1352840:three_prime_UTR 15.0%
!! TAAATTGTGTAATTGATTAA+GGG + tig0012839:127025-127044 Msa1352840:three_prime_UTR 15.0%
!!! ACAAGTTGTTTTTAAATGAT+CGG - tig0012839:125275-125294 None:intergenic 20.0%
!! TCAAATTGTTGATGTAAAAA+CGG - tig0012839:125473-125492 None:intergenic 20.0%
!! TCAAAATTTGCATTGAATTT+CGG + tig0012839:125613-125632 Msa1352840:intron 20.0%
!! AATGCAAAATTGTTACTATT+AGG + tig0012839:125794-125813 Msa1352840:intron 20.0%
!!! TAATATGGACTAAATTGAAT+TGG - tig0012839:125884-125903 None:intergenic 20.0%
!! ATATAAGGTTCTTCTAAATT+AGG + tig0012839:126864-126883 Msa1352840:three_prime_UTR 20.0%
!! TATAAGGTTCTTCTAAATTA+GGG + tig0012839:126865-126884 Msa1352840:three_prime_UTR 20.0%
!!! TTTTTGGGAAATAATAATAC+TGG - tig0012839:126981-127000 None:intergenic 20.0%
!!! ATGTAAACTATCAGTTTTTT+GGG - tig0012839:126996-127015 None:intergenic 20.0%
!!! AATGTAAACTATCAGTTTTT+TGG - tig0012839:126997-127016 None:intergenic 20.0%
!!! ACAAGTTGTTTTTAAATGAT+CGG - tig0012839:125275-125294 None:intergenic 20.0%
!! TCAAATTGTTGATGTAAAAA+CGG - tig0012839:125473-125492 None:intergenic 20.0%
!! TCAAAATTTGCATTGAATTT+CGG + tig0012839:125613-125632 Msa1352840:intron 20.0%
!! AATGCAAAATTGTTACTATT+AGG + tig0012839:125794-125813 Msa1352840:intron 20.0%
!!! TAATATGGACTAAATTGAAT+TGG - tig0012839:125884-125903 None:intergenic 20.0%
!! ATATAAGGTTCTTCTAAATT+AGG + tig0012839:126864-126883 Msa1352840:three_prime_UTR 20.0%
!! TATAAGGTTCTTCTAAATTA+GGG + tig0012839:126865-126884 Msa1352840:three_prime_UTR 20.0%
!!! TTTTTGGGAAATAATAATAC+TGG - tig0012839:126981-127000 None:intergenic 20.0%
!!! ATGTAAACTATCAGTTTTTT+GGG - tig0012839:126996-127015 None:intergenic 20.0%
!!! AATGTAAACTATCAGTTTTT+TGG - tig0012839:126997-127016 None:intergenic 20.0%
!! TGTTACTTGAAATTTCTTTG+AGG + tig0012839:124832-124851 Msa1352840:five_prime_UTR 25.0%
!! CATATTTTATCCTCAAGTTA+AGG + tig0012839:125062-125081 Msa1352840:intron 25.0%
!! AAATAAAAGACCTTAACTTG+AGG - tig0012839:125075-125094 None:intergenic 25.0%
! TATGAAGAATCTTGTAAGTT+TGG - tig0012839:125175-125194 None:intergenic 25.0%
! ACTTGTTTCATGAAAAGTAA+AGG + tig0012839:125289-125308 Msa1352840:intron 25.0%
!!! ATATAAGTTGGTCCATATTA+AGG + tig0012839:125324-125343 Msa1352840:intron 25.0%
!!! TATAAGTTGGTCCATATTAA+GGG + tig0012839:125325-125344 Msa1352840:intron 25.0%
! TATGCGTGTGTATATTATAA+GGG - tig0012839:125352-125371 None:intergenic 25.0%
! ATATGCGTGTGTATATTATA+AGG - tig0012839:125353-125372 None:intergenic 25.0%
! TACACACGCATATATTAAAT+TGG + tig0012839:125360-125379 Msa1352840:intron 25.0%
! AACTTTGTGATATGATATTG+TGG - tig0012839:125510-125529 None:intergenic 25.0%
! AACTACAGACAATTCAAATT+TGG + tig0012839:125689-125708 Msa1352840:intron 25.0%
! AAAACAAGTCACGTTTAATA+TGG - tig0012839:125899-125918 None:intergenic 25.0%
!!! TTTGATTTGTTAACTCAGAA+TGG - tig0012839:126041-126060 None:intergenic 25.0%
!! AAATGACTTGTGTTACAAAT+AGG + tig0012839:126512-126531 Msa1352840:intron 25.0%
! ATAACATCATGTTGATCAAA+TGG + tig0012839:126758-126777 Msa1352840:intron 25.0%
! TCAAATGGAAATTTATTCGA+TGG + tig0012839:126773-126792 Msa1352840:intron 25.0%
!! TGTTACTTGAAATTTCTTTG+AGG + tig0012839:124832-124851 Msa1352840:five_prime_UTR 25.0%
!! CATATTTTATCCTCAAGTTA+AGG + tig0012839:125062-125081 Msa1352840:intron 25.0%
!! AAATAAAAGACCTTAACTTG+AGG - tig0012839:125075-125094 None:intergenic 25.0%
! TATGAAGAATCTTGTAAGTT+TGG - tig0012839:125175-125194 None:intergenic 25.0%
! ACTTGTTTCATGAAAAGTAA+AGG + tig0012839:125289-125308 Msa1352840:intron 25.0%
!!! ATATAAGTTGGTCCATATTA+AGG + tig0012839:125324-125343 Msa1352840:intron 25.0%
!!! TATAAGTTGGTCCATATTAA+GGG + tig0012839:125325-125344 Msa1352840:intron 25.0%
! TATGCGTGTGTATATTATAA+GGG - tig0012839:125352-125371 None:intergenic 25.0%
! ATATGCGTGTGTATATTATA+AGG - tig0012839:125353-125372 None:intergenic 25.0%
! TACACACGCATATATTAAAT+TGG + tig0012839:125360-125379 Msa1352840:intron 25.0%
! AACTTTGTGATATGATATTG+TGG - tig0012839:125510-125529 None:intergenic 25.0%
! AACTACAGACAATTCAAATT+TGG + tig0012839:125689-125708 Msa1352840:intron 25.0%
! AAAACAAGTCACGTTTAATA+TGG - tig0012839:125899-125918 None:intergenic 25.0%
!!! TTTGATTTGTTAACTCAGAA+TGG - tig0012839:126041-126060 None:intergenic 25.0%
!! AAATGACTTGTGTTACAAAT+AGG + tig0012839:126512-126531 Msa1352840:intron 25.0%
! ATAACATCATGTTGATCAAA+TGG + tig0012839:126758-126777 Msa1352840:intron 25.0%
! TCAAATGGAAATTTATTCGA+TGG + tig0012839:126773-126792 Msa1352840:intron 25.0%
! ATTGTCTTTGAAAGAGTGAT+GGG - tig0012839:124736-124755 None:intergenic 30.0%
AATCTTGTAAGTTTGGACTT+TGG - tig0012839:125168-125187 None:intergenic 30.0%
!! ATAAGTTGGTCCATATTAAG+GGG + tig0012839:125326-125345 Msa1352840:intron 30.0%
ATGATTATCGATCATTGTGA+AGG - tig0012839:125539-125558 None:intergenic 30.0%
ACATTAACATGTGCTAACAT+TGG - tig0012839:125715-125734 None:intergenic 30.0%
AATAGTGACTATAGAGTGTA+AGG - tig0012839:126205-126224 None:intergenic 30.0%
GTCTGACTTTACTTATCTTT+CGG + tig0012839:126457-126476 Msa1352840:intron 30.0%
AAATAGGTTGCTAAGGAATA+GGG + tig0012839:126528-126547 Msa1352840:intron 30.0%
!!! GTACACTTTTTTTCTTTCAC+GGG - tig0012839:126569-126588 None:intergenic 30.0%
!!! CGTACACTTTTTTTCTTTCA+CGG - tig0012839:126570-126589 None:intergenic 30.0%
TGAGATACGTTCTTCTAAAT+TGG - tig0012839:126638-126657 None:intergenic 30.0%
GTTCAGATTATGTTACCTTT+CGG - tig0012839:126687-126706 None:intergenic 30.0%
TACTGGTGTTCATAATGAAT+TGG - tig0012839:126964-126983 None:intergenic 30.0%
! CTGGTTAAGGTATCTAAAAA+AGG + tig0012839:127074-127093 Msa1352840:three_prime_UTR 30.0%
! ATTGTCTTTGAAAGAGTGAT+GGG - tig0012839:124736-124755 None:intergenic 30.0%
AATCTTGTAAGTTTGGACTT+TGG - tig0012839:125168-125187 None:intergenic 30.0%
!! ATAAGTTGGTCCATATTAAG+GGG + tig0012839:125326-125345 Msa1352840:intron 30.0%
ATGATTATCGATCATTGTGA+AGG - tig0012839:125539-125558 None:intergenic 30.0%
ACATTAACATGTGCTAACAT+TGG - tig0012839:125715-125734 None:intergenic 30.0%
AATAGTGACTATAGAGTGTA+AGG - tig0012839:126205-126224 None:intergenic 30.0%
GTCTGACTTTACTTATCTTT+CGG + tig0012839:126457-126476 Msa1352840:intron 30.0%
AAATAGGTTGCTAAGGAATA+GGG + tig0012839:126528-126547 Msa1352840:intron 30.0%
!!! GTACACTTTTTTTCTTTCAC+GGG - tig0012839:126569-126588 None:intergenic 30.0%
!!! CGTACACTTTTTTTCTTTCA+CGG - tig0012839:126570-126589 None:intergenic 30.0%
TGAGATACGTTCTTCTAAAT+TGG - tig0012839:126638-126657 None:intergenic 30.0%
GTTCAGATTATGTTACCTTT+CGG - tig0012839:126687-126706 None:intergenic 30.0%
TACTGGTGTTCATAATGAAT+TGG - tig0012839:126964-126983 None:intergenic 30.0%
! CTGGTTAAGGTATCTAAAAA+AGG + tig0012839:127074-127093 Msa1352840:three_prime_UTR 30.0%
! TTGTCTTTGAAAGAGTGATG+GGG - tig0012839:124735-124754 None:intergenic 35.0%
! CATTGTCTTTGAAAGAGTGA+TGG - tig0012839:124737-124756 None:intergenic 35.0%
GTTAATGCACTTGCAATGTT+GGG - tig0012839:124787-124806 None:intergenic 35.0%
TGTTAATGCACTTGCAATGT+TGG - tig0012839:124788-124807 None:intergenic 35.0%
TTCCTTCATCTCAGTATCAT+TGG - tig0012839:124907-124926 None:intergenic 35.0%
CATGAAGAAGATGAAGATGA+AGG - tig0012839:124948-124967 None:intergenic 35.0%
CTTCATCTTCATCTTCTTCA+TGG + tig0012839:124946-124965 Msa1352840:CDS 35.0%
TGACACTTACCAAATCTATG+TGG - tig0012839:124993-125012 None:intergenic 35.0%
TATTGATAGGCTCTTGACTT+AGG - tig0012839:125118-125137 None:intergenic 35.0%
ATTATAAGGGCCCCTTAATA+TGG - tig0012839:125339-125358 None:intergenic 35.0%
ATTATCGATCATTGTGAAGG+TGG - tig0012839:125536-125555 None:intergenic 35.0%
CTCAAACGATTGTTGAACTT+CGG + tig0012839:126392-126411 Msa1352840:intron 35.0%
GTGTTACAAATAGGTTGCTA+AGG + tig0012839:126521-126540 Msa1352840:intron 35.0%
CAAATAGGTTGCTAAGGAAT+AGG + tig0012839:126527-126546 Msa1352840:intron 35.0%
!! TTCGATGGTTTTACTTGTAC+AGG + tig0012839:126788-126807 Msa1352840:intron 35.0%
TCATTGCTCTCATCAACTTT+GGG - tig0012839:126831-126850 None:intergenic 35.0%
TTCATTGCTCTCATCAACTT+TGG - tig0012839:126832-126851 None:intergenic 35.0%
!! AAAGTTGATGAGAGCAATGA+AGG + tig0012839:126831-126850 Msa1352840:CDS 35.0%
!! TCTTCTAAATTAGGGCATTG+TGG + tig0012839:126873-126892 Msa1352840:three_prime_UTR 35.0%
!! CTTCTAAATTAGGGCATTGT+GGG + tig0012839:126874-126893 Msa1352840:three_prime_UTR 35.0%
!! TTCTAAATTAGGGCATTGTG+GGG + tig0012839:126875-126894 Msa1352840:three_prime_UTR 35.0%
ATAATAGTGGTACACATGTG+AGG - tig0012839:126913-126932 None:intergenic 35.0%
TGATTAAGGGTTGTGTTAAC+CGG + tig0012839:127038-127057 Msa1352840:three_prime_UTR 35.0%
! TTGTCTTTGAAAGAGTGATG+GGG - tig0012839:124735-124754 None:intergenic 35.0%
! CATTGTCTTTGAAAGAGTGA+TGG - tig0012839:124737-124756 None:intergenic 35.0%
GTTAATGCACTTGCAATGTT+GGG - tig0012839:124787-124806 None:intergenic 35.0%
TGTTAATGCACTTGCAATGT+TGG - tig0012839:124788-124807 None:intergenic 35.0%
TTCCTTCATCTCAGTATCAT+TGG - tig0012839:124907-124926 None:intergenic 35.0%
CATGAAGAAGATGAAGATGA+AGG - tig0012839:124948-124967 None:intergenic 35.0%
CTTCATCTTCATCTTCTTCA+TGG + tig0012839:124946-124965 Msa1352840:CDS 35.0%
TGACACTTACCAAATCTATG+TGG - tig0012839:124993-125012 None:intergenic 35.0%
TATTGATAGGCTCTTGACTT+AGG - tig0012839:125118-125137 None:intergenic 35.0%
ATTATAAGGGCCCCTTAATA+TGG - tig0012839:125339-125358 None:intergenic 35.0%
ATTATCGATCATTGTGAAGG+TGG - tig0012839:125536-125555 None:intergenic 35.0%
CTCAAACGATTGTTGAACTT+CGG + tig0012839:126392-126411 Msa1352840:intron 35.0%
GTGTTACAAATAGGTTGCTA+AGG + tig0012839:126521-126540 Msa1352840:intron 35.0%
CAAATAGGTTGCTAAGGAAT+AGG + tig0012839:126527-126546 Msa1352840:intron 35.0%
!! TTCGATGGTTTTACTTGTAC+AGG + tig0012839:126788-126807 Msa1352840:intron 35.0%
TCATTGCTCTCATCAACTTT+GGG - tig0012839:126831-126850 None:intergenic 35.0%
TTCATTGCTCTCATCAACTT+TGG - tig0012839:126832-126851 None:intergenic 35.0%
!! AAAGTTGATGAGAGCAATGA+AGG + tig0012839:126831-126850 Msa1352840:CDS 35.0%
!! TCTTCTAAATTAGGGCATTG+TGG + tig0012839:126873-126892 Msa1352840:three_prime_UTR 35.0%
!! CTTCTAAATTAGGGCATTGT+GGG + tig0012839:126874-126893 Msa1352840:three_prime_UTR 35.0%
!! TTCTAAATTAGGGCATTGTG+GGG + tig0012839:126875-126894 Msa1352840:three_prime_UTR 35.0%
ATAATAGTGGTACACATGTG+AGG - tig0012839:126913-126932 None:intergenic 35.0%
TGATTAAGGGTTGTGTTAAC+CGG + tig0012839:127038-127057 Msa1352840:three_prime_UTR 35.0%
AGCCAATGATACTGAGATGA+AGG + tig0012839:124902-124921 Msa1352840:CDS 40.0%
CTTCATCTTCTTCATGGAGT+AGG + tig0012839:124952-124971 Msa1352840:CDS 40.0%
CACTTACCAAATCTATGTGG+AGG - tig0012839:124990-125009 None:intergenic 40.0%
CGGTTACATTGCTTTGATTG+TGG - tig0012839:126071-126090 None:intergenic 40.0%
AAGGAACATAGACGTCTCAA+AGG + tig0012839:126150-126169 Msa1352840:intron 40.0%
AGGAACATAGACGTCTCAAA+GGG + tig0012839:126151-126170 Msa1352840:intron 40.0%
!! TTTTCTTTCACGGGCTTGTT+GGG - tig0012839:126560-126579 None:intergenic 40.0%
! TTTTTCTTTCACGGGCTTGT+TGG - tig0012839:126561-126580 None:intergenic 40.0%
TTATGTTACCTTTCGGAGCA+TGG - tig0012839:126680-126699 None:intergenic 40.0%
AGAGCAATGAAGGTTAGACA+GGG + tig0012839:126841-126860 Msa1352840:exon 40.0%
GAAGGTTAGACAGGGATATA+AGG + tig0012839:126849-126868 Msa1352840:exon 40.0%
AGCCAATGATACTGAGATGA+AGG + tig0012839:124902-124921 Msa1352840:CDS 40.0%
CTTCATCTTCTTCATGGAGT+AGG + tig0012839:124952-124971 Msa1352840:CDS 40.0%
CACTTACCAAATCTATGTGG+AGG - tig0012839:124990-125009 None:intergenic 40.0%
CGGTTACATTGCTTTGATTG+TGG - tig0012839:126071-126090 None:intergenic 40.0%
AAGGAACATAGACGTCTCAA+AGG + tig0012839:126150-126169 Msa1352840:intron 40.0%
AGGAACATAGACGTCTCAAA+GGG + tig0012839:126151-126170 Msa1352840:intron 40.0%
!! TTTTCTTTCACGGGCTTGTT+GGG - tig0012839:126560-126579 None:intergenic 40.0%
! TTTTTCTTTCACGGGCTTGT+TGG - tig0012839:126561-126580 None:intergenic 40.0%
TTATGTTACCTTTCGGAGCA+TGG - tig0012839:126680-126699 None:intergenic 40.0%
AGAGCAATGAAGGTTAGACA+GGG + tig0012839:126841-126860 Msa1352840:exon 40.0%
GAAGGTTAGACAGGGATATA+AGG + tig0012839:126849-126868 Msa1352840:exon 40.0%
ATGAAGGAAGCTGCAACAAC+TGG + tig0012839:124918-124937 Msa1352840:CDS 45.0%
! AATCTATGTGGAGGCATAGG+AGG - tig0012839:124981-125000 None:intergenic 45.0%
! CCAAATCTATGTGGAGGCAT+AGG - tig0012839:124984-125003 None:intergenic 45.0%
CCTATGCCTCCACATAGATT+TGG + tig0012839:124981-125000 Msa1352840:CDS 45.0%
GGTGACAGTTGGATCTAGAT+TGG - tig0012839:125643-125662 None:intergenic 45.0%
TAGATCCAACTGTCACCTGA+GGG + tig0012839:125646-125665 Msa1352840:intron 45.0%
AGATCTTCATCGCTATCGTC+TGG - tig0012839:125976-125995 None:intergenic 45.0%
TCTGTTCGAAGTTCCAGATG+TGG + tig0012839:125993-126012 Msa1352840:CDS 45.0%
TTCGAAGTTCCAGATGTGGA+AGG + tig0012839:125997-126016 Msa1352840:CDS 45.0%
CATTGTGTACCTTCCACATC+TGG - tig0012839:126009-126028 None:intergenic 45.0%
GTCTATGTTCCTTGTCTGCA+GGG - tig0012839:126143-126162 None:intergenic 45.0%
GTTGCTAAGGAATAGGGTCT+CGG + tig0012839:126534-126553 Msa1352840:intron 45.0%
GAGAGCAATGAAGGTTAGAC+AGG + tig0012839:126840-126859 Msa1352840:exon 45.0%
ATGAAGGAAGCTGCAACAAC+TGG + tig0012839:124918-124937 Msa1352840:CDS 45.0%
! AATCTATGTGGAGGCATAGG+AGG - tig0012839:124981-125000 None:intergenic 45.0%
! CCAAATCTATGTGGAGGCAT+AGG - tig0012839:124984-125003 None:intergenic 45.0%
CCTATGCCTCCACATAGATT+TGG + tig0012839:124981-125000 Msa1352840:CDS 45.0%
GGTGACAGTTGGATCTAGAT+TGG - tig0012839:125643-125662 None:intergenic 45.0%
TAGATCCAACTGTCACCTGA+GGG + tig0012839:125646-125665 Msa1352840:intron 45.0%
AGATCTTCATCGCTATCGTC+TGG - tig0012839:125976-125995 None:intergenic 45.0%
TCTGTTCGAAGTTCCAGATG+TGG + tig0012839:125993-126012 Msa1352840:CDS 45.0%
TTCGAAGTTCCAGATGTGGA+AGG + tig0012839:125997-126016 Msa1352840:CDS 45.0%
CATTGTGTACCTTCCACATC+TGG - tig0012839:126009-126028 None:intergenic 45.0%
GTCTATGTTCCTTGTCTGCA+GGG - tig0012839:126143-126162 None:intergenic 45.0%
GTTGCTAAGGAATAGGGTCT+CGG + tig0012839:126534-126553 Msa1352840:intron 45.0%
GAGAGCAATGAAGGTTAGAC+AGG + tig0012839:126840-126859 Msa1352840:exon 45.0%
!!! TTTTTTAATTAAATATTGAT+AGG - tig0012839:125131-125150 None:intergenic 5.0%
!! TATATATATATAATATAAGT+TGG + tig0012839:125312-125331 Msa1352840:intron 5.0%
!! ATTGTTAAATAAAAATTTAA+CGG - tig0012839:125399-125418 None:intergenic 5.0%
!!! ATTTTATAAATATATAATAG+TGG - tig0012839:126926-126945 None:intergenic 5.0%
!!! TTTTTTAATTAAATATTGAT+AGG - tig0012839:125131-125150 None:intergenic 5.0%
!! TATATATATATAATATAAGT+TGG + tig0012839:125312-125331 Msa1352840:intron 5.0%
!! ATTGTTAAATAAAAATTTAA+CGG - tig0012839:125399-125418 None:intergenic 5.0%
!!! ATTTTATAAATATATAATAG+TGG - tig0012839:126926-126945 None:intergenic 5.0%
!! GTGATGGGGCCTAAGAGTTT+TGG - tig0012839:124721-124740 None:intergenic 50.0%
CTAGATCCAACTGTCACCTG+AGG + tig0012839:125645-125664 Msa1352840:intron 50.0%
ACCGATGCTCAACTTCAAGC+AGG + tig0012839:126087-126106 Msa1352840:CDS 50.0%
GCCTGCTTGAAGTTGAGCAT+CGG - tig0012839:126091-126110 None:intergenic 50.0%
TGTCTGCAGGGTTTCTTCCA+CGG - tig0012839:126131-126150 None:intergenic 50.0%
TGGAAGAAACCCTGCAGACA+AGG + tig0012839:126131-126150 Msa1352840:CDS 50.0%
CGTCTATGTTCCTTGTCTGC+AGG - tig0012839:126144-126163 None:intergenic 50.0%
AGATACCTTAACCAGTGCCC+CGG - tig0012839:127069-127088 None:intergenic 50.0%
!! GTGATGGGGCCTAAGAGTTT+TGG - tig0012839:124721-124740 None:intergenic 50.0%
CTAGATCCAACTGTCACCTG+AGG + tig0012839:125645-125664 Msa1352840:intron 50.0%
ACCGATGCTCAACTTCAAGC+AGG + tig0012839:126087-126106 Msa1352840:CDS 50.0%
GCCTGCTTGAAGTTGAGCAT+CGG - tig0012839:126091-126110 None:intergenic 50.0%
TGTCTGCAGGGTTTCTTCCA+CGG - tig0012839:126131-126150 None:intergenic 50.0%
TGGAAGAAACCCTGCAGACA+AGG + tig0012839:126131-126150 Msa1352840:CDS 50.0%
CGTCTATGTTCCTTGTCTGC+AGG - tig0012839:126144-126163 None:intergenic 50.0%
AGATACCTTAACCAGTGCCC+CGG - tig0012839:127069-127088 None:intergenic 50.0%
TCACTCCCTCAGGTGACAGT+TGG - tig0012839:125654-125673 None:intergenic 55.0%
TCTCGTGCATTCACTCCCTC+AGG - tig0012839:125664-125683 None:intergenic 55.0%
CAACTTCAAGCAGGCTTCCC+AGG + tig0012839:126096-126115 Msa1352840:CDS 55.0%
TCGGAGCATGGCGTTCTCAT+TGG - tig0012839:126668-126687 None:intergenic 55.0%
TGAGAACGCCATGCTCCGAA+AGG + tig0012839:126669-126688 Msa1352840:CDS 55.0%
GTTGTGTTAACCGGTGCTCC+CGG + tig0012839:127047-127066 Msa1352840:three_prime_UTR 55.0%
TTGTGTTAACCGGTGCTCCC+GGG + tig0012839:127048-127067 Msa1352840:three_prime_UTR 55.0%
GATACCTTAACCAGTGCCCC+GGG - tig0012839:127068-127087 None:intergenic 55.0%
TCACTCCCTCAGGTGACAGT+TGG - tig0012839:125654-125673 None:intergenic 55.0%
TCTCGTGCATTCACTCCCTC+AGG - tig0012839:125664-125683 None:intergenic 55.0%
CAACTTCAAGCAGGCTTCCC+AGG + tig0012839:126096-126115 Msa1352840:CDS 55.0%
TCGGAGCATGGCGTTCTCAT+TGG - tig0012839:126668-126687 None:intergenic 55.0%
TGAGAACGCCATGCTCCGAA+AGG + tig0012839:126669-126688 Msa1352840:CDS 55.0%
GTTGTGTTAACCGGTGCTCC+CGG + tig0012839:127047-127066 Msa1352840:three_prime_UTR 55.0%
TTGTGTTAACCGGTGCTCCC+GGG + tig0012839:127048-127067 Msa1352840:three_prime_UTR 55.0%
GATACCTTAACCAGTGCCCC+GGG - tig0012839:127068-127087 None:intergenic 55.0%
CTGCAGGGTTTCTTCCACGG+CGG - tig0012839:126128-126147 None:intergenic 60.0%
TGTGTTAACCGGTGCTCCCG+GGG + tig0012839:127049-127068 Msa1352840:three_prime_UTR 60.0%
CTGCAGGGTTTCTTCCACGG+CGG - tig0012839:126128-126147 None:intergenic 60.0%
TGTGTTAACCGGTGCTCCCG+GGG + tig0012839:127049-127068 Msa1352840:three_prime_UTR 60.0%
!! TGCTCCCGGGGCACTGGTTA+AGG + tig0012839:127061-127080 Msa1352840:three_prime_UTR 65.0%
!! TGCTCCCGGGGCACTGGTTA+AGG + tig0012839:127061-127080 Msa1352840:three_prime_UTR 65.0%
TTCCACGGCGGCGCTTGCCT+GGG - tig0012839:126116-126135 None:intergenic 70.0%
! AACCAGTGCCCCGGGAGCAC+CGG - tig0012839:127060-127079 None:intergenic 70.0%
TTCCACGGCGGCGCTTGCCT+GGG - tig0012839:126116-126135 None:intergenic 70.0%
! AACCAGTGCCCCGGGAGCAC+CGG - tig0012839:127060-127079 None:intergenic 70.0%
! TTCCCAGGCAAGCGCCGCCG+TGG + tig0012839:126111-126130 Msa1352840:CDS 75.0%
CTTCCACGGCGGCGCTTGCC+TGG - tig0012839:126117-126136 None:intergenic 75.0%
AACCGGTGCTCCCGGGGCAC+TGG + tig0012839:127055-127074 Msa1352840:three_prime_UTR 75.0%
! TTCCCAGGCAAGCGCCGCCG+TGG + tig0012839:126111-126130 Msa1352840:CDS 75.0%
CTTCCACGGCGGCGCTTGCC+TGG - tig0012839:126117-126136 None:intergenic 75.0%
AACCGGTGCTCCCGGGGCAC+TGG + tig0012839:127055-127074 Msa1352840:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
tig0012839 gene 124713 127134 124713 ID=Msa1352840;Name=Msa1352840
tig0012839 mRNA 124713 127134 124713 ID=Msa1352840-mRNA-1;Parent=Msa1352840;Name=Msa1352840-mRNA-1;_AED=0.22;_eAED=0.22;_QI=175|0.66|0.5|1|1|1|4|277|145
tig0012839 exon 124713 125002 124713 ID=Msa1352840-mRNA-1:exon:8360;Parent=Msa1352840-mRNA-1
tig0012839 exon 125977 126162 125977 ID=Msa1352840-mRNA-1:exon:8361;Parent=Msa1352840-mRNA-1
tig0012839 exon 126602 126690 126602 ID=Msa1352840-mRNA-1:exon:8362;Parent=Msa1352840-mRNA-1
tig0012839 exon 126810 127134 126810 ID=Msa1352840-mRNA-1:exon:8363;Parent=Msa1352840-mRNA-1
tig0012839 five_prime_UTR 124713 124887 124713 ID=Msa1352840-mRNA-1:five_prime_utr;Parent=Msa1352840-mRNA-1
tig0012839 CDS 124888 125002 124888 ID=Msa1352840-mRNA-1:cds;Parent=Msa1352840-mRNA-1
tig0012839 CDS 125977 126162 125977 ID=Msa1352840-mRNA-1:cds;Parent=Msa1352840-mRNA-1
tig0012839 CDS 126602 126690 126602 ID=Msa1352840-mRNA-1:cds;Parent=Msa1352840-mRNA-1
tig0012839 CDS 126810 126857 126810 ID=Msa1352840-mRNA-1:cds;Parent=Msa1352840-mRNA-1
tig0012839 three_prime_UTR 126858 127134 126858 ID=Msa1352840-mRNA-1:three_prime_utr;Parent=Msa1352840-mRNA-1
Gene Sequence

>Msa1352840

ATGTCTCTTTCAAGAGCCAATGATACTGAGATGAAGGAAGCTGCAACAACTGGAGCACCTTCATCTTCATCTTCTTCATGGAGTAGGTTACCTCCTATGCCTCCACATAGATTTGACGATAGCGATGAAGATCTGTTCGAAGTTCCAGATGTGGAAGGTACACAATGTCAAAGTGTCCATTCTGAGTTAACAAATCAAAATAGTAACCACAATCAAAGCAATGTAACCGATGCTCAACTTCAAGCAGGCTTCCCAGGCAAGCGCCGCCGTGGAAGAAACCCTGCAGACAAGGAACATAGACAATCAAGAGCTAAAGAGTTTGAAGATAAGAACTCCAATTTAGAAGAACGTATCTCAACTTTGACCAATGAGAACGCCATGCTCCGAAAGGTTCTTATGAACACTAGACCCAAAGTTGATGAGAGCAATGAAGGTTAG

Protein sequence

>Msa1352840

MSLSRANDTEMKEAATTGAPSSSSSSWSRLPPMPPHRFDDSDEDLFEVPDVEGTQCQSVHSELTNQNSNHNQSNVTDAQLQAGFPGKRRRGRNPADKEHRQSRAKEFEDKNSNLEERISTLTNENAMLRKVLMNTRPKVDESNEG*