AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1019370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019370 MtrunA17_Chr7g0235021 94.225 329 19 0 1 329 1 329 0.0 630
Msa1019370 MtrunA17_Chr4g0015051 68.389 329 103 1 1 328 1 329 4.40e-163 457
Msa1019370 MtrunA17_Chr4g0014951 68.085 329 104 1 1 328 1 329 1.16e-158 446
Msa1019370 MtrunA17_Chr4g0014971 67.173 329 107 1 1 328 1 329 1.75e-158 446
Msa1019370 MtrunA17_Chr4g0015091 66.463 328 110 0 1 328 1 328 3.21e-157 443
Msa1019370 MtrunA17_Chr4g0014931 67.781 329 105 1 1 328 1 329 8.35e-157 442
Msa1019370 MtrunA17_Chr4g0014691 65.854 328 112 0 1 328 1 328 9.84e-153 432
Msa1019370 MtrunA17_Chr4g0014541 65.549 328 113 0 1 328 1 328 1.48e-151 429
Msa1019370 MtrunA17_Chr4g0015001 65.639 227 78 0 102 328 4 230 5.58e-102 299
Msa1019370 MtrunA17_Chr8g0365421 33.233 331 184 8 6 326 76 379 1.69e-36 135
Msa1019370 MtrunA17_Chr8g0351271 30.330 333 191 8 6 326 3 306 1.82e-34 129
Msa1019370 MtrunA17_Chr8g0351481 30.330 333 191 8 6 326 3 306 3.52e-34 128
Msa1019370 MtrunA17_Chr6g0453201 34.030 335 179 12 7 328 12 317 4.70e-31 119
Msa1019370 MtrunA17_Chr6g0466321 32.024 331 187 11 7 326 20 323 2.02e-27 109
Msa1019370 MtrunA17_Chr6g0453191 33.333 309 170 10 7 306 12 293 5.31e-27 108
Msa1019370 MtrunA17_Chr7g0228011 34.226 336 175 11 6 326 8 312 1.30e-26 107
Msa1019370 MtrunA17_Chr6g0465501 31.804 327 185 11 11 326 24 323 1.62e-26 107
Msa1019370 MtrunA17_Chr2g0316731 28.116 345 215 10 7 329 27 360 9.37e-23 97.4
Msa1019370 MtrunA17_Chr2g0281281 26.300 327 213 9 16 327 10 323 5.69e-22 94.7
Msa1019370 MtrunA17_Chr2g0281301 28.788 330 201 13 16 327 23 336 7.78e-21 91.7
Msa1019370 MtrunA17_Chr4g0045041 29.003 331 190 14 24 326 306 619 1.19e-14 74.7
Msa1019370 MtrunA17_Chr4g0045061 27.879 330 195 14 24 326 306 619 3.23e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019370 AT4G13010.1 70.732 328 96 0 1 328 1 328 4.02e-168 471
Msa1019370 AT1G23740.1 34.535 333 181 9 4 326 76 381 7.73e-37 136
Msa1019370 AT3G15090.1 27.826 345 216 10 7 329 33 366 6.50e-24 100
Msa1019370 AT4G21580.1 27.964 329 207 9 16 328 10 324 4.43e-20 89.7
Msa1019370 AT4G21580.3 28.049 328 202 9 16 328 10 318 2.14e-19 87.8
Msa1019370 AT1G49670.1 34.359 195 109 8 19 208 301 481 1.52e-17 84.0
Msa1019370 AT4G21580.2 27.304 293 184 8 52 328 12 291 7.14e-16 77.0
Msa1019370 AT1G49670.2 30.986 213 115 8 19 208 301 504 4.06e-15 76.6
Msa1019370 AT5G61510.1 27.404 208 139 5 2 208 80 276 6.82e-11 63.2

Find 83 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGATGCTGAGATTTC+TGG 0.190340 7_1:-40982899 None:intergenic
AAGAAGTAGAAGAACCTTTA+AGG 0.200493 7_1:-40979898 None:intergenic
AGCCTTAGCTAGAGGAAATT+TGG 0.203726 7_1:-40983443 None:intergenic
AGGAAGTTACATGGTATATA+TGG 0.205187 7_1:-40981515 None:intergenic
AGCTGAGTTTGCTGTTATTA+AGG 0.238342 7_1:+40982853 Msa1019370:CDS
TGGAGGATCCACTGCCTTAA+AGG 0.271645 7_1:+40979884 Msa1019370:CDS
CACTTTCTGTTTGTTCCAAT+TGG 0.275188 7_1:+40979772 Msa1019370:five_prime_UTR
AGTATTGATGGTCATGCAAC+TGG 0.350063 7_1:+40983484 Msa1019370:CDS
TTCTGTACTTTCCAATCAAA+TGG 0.355839 7_1:-40981458 None:intergenic
TTACCATTCGTGTTCAAGTT+AGG 0.362335 7_1:-40983253 None:intergenic
CTCTTTAATTCAACACCAAT+TGG 0.370280 7_1:-40983163 None:intergenic
GAGTTTGATTCCTATGGATT+TGG 0.372539 7_1:-40982966 None:intergenic
AAGGATCTTCAGTTTCTTGT+TGG 0.376343 7_1:+40983382 Msa1019370:CDS
CTAGTATAAATCCATTTGAT+TGG 0.387955 7_1:+40981447 Msa1019370:CDS
AACTGAAGATCCTTACCCTT+TGG 0.395500 7_1:-40983373 None:intergenic
ATGCGTGCTGTTCAGTACTA+TGG 0.398204 7_1:+40979855 Msa1019370:CDS
GTTGAATTAAAGAGTCCTTC+TGG 0.400486 7_1:+40983172 Msa1019370:CDS
TGGTATCATACTTTAATTTG+TGG 0.412351 7_1:+40979792 Msa1019370:five_prime_UTR
GGTGTTAAGAAGTTCAAAAC+TGG 0.429943 7_1:+40982344 Msa1019370:CDS
AATTAAAGTATGATACCAAT+TGG 0.431056 7_1:-40979787 None:intergenic
ATCAAAACTTCATCTTTACT+AGG 0.431176 7_1:-40981410 None:intergenic
ATGGAAATTGTCAAAAGCTT+AGG 0.438856 7_1:+40983112 Msa1019370:CDS
TTCCATGTTTCGAGCGCCGC+AGG 0.443235 7_1:-40983095 None:intergenic
ATTGACTATAAAACACCAAT+TGG 0.445370 7_1:+40983148 Msa1019370:CDS
TCCGTCGAGTTTGATTCCTA+TGG 0.448350 7_1:-40982972 None:intergenic
ATCTTTACTAGGACTTGGTA+TGG 0.459291 7_1:-40981399 None:intergenic
GCTTCTAATTCCAAAGGGTA+AGG 0.460785 7_1:+40983363 Msa1019370:CDS
GGTTGGTCTAAGAGTATTGA+TGG 0.460981 7_1:+40983472 Msa1019370:CDS
ACATGGTATATATGGGAACT+TGG 0.461377 7_1:-40981507 None:intergenic
CTATGGATTTGGTGAGTGCT+TGG 0.465508 7_1:-40982955 None:intergenic
GAGGTCATGGAGGTTGGTAA+AGG 0.473384 7_1:+40982323 Msa1019370:CDS
CCCTTTGGAATTAGAAGCAA+AGG 0.479238 7_1:-40983358 None:intergenic
AAAACTGGTGACAAAGTTGT+AGG 0.479548 7_1:+40982359 Msa1019370:CDS
GGAAGTTACATGGTATATAT+GGG 0.494611 7_1:-40981514 None:intergenic
CTTGTTGGTTTGATTAAGCA+AGG 0.495471 7_1:+40983397 Msa1019370:CDS
TTATTATGGTAGAGTGGTGG+AGG 0.497869 7_1:+40982827 Msa1019370:intron
GCCTTTGCTTCTAATTCCAA+AGG 0.500098 7_1:+40983357 Msa1019370:CDS
TAGAAGAACCTTTAAGGCAG+TGG 0.507826 7_1:-40979892 None:intergenic
ACTTCATCTTTACTAGGACT+TGG 0.510602 7_1:-40981404 None:intergenic
CCTCTAGCTAAGGCTGAAGA+TGG 0.513384 7_1:+40983451 Msa1019370:CDS
CACCTGCGGCGCTCGAAACA+TGG 0.515827 7_1:+40983093 Msa1019370:CDS
ACACTCTCTCGCTGTGAACA+TGG 0.516951 7_1:+40979821 Msa1019370:exon
TGATGTAGCAGGAGAGGTCA+TGG 0.520868 7_1:+40982310 Msa1019370:CDS
CAGTACTATGGCTATGGTGG+AGG 0.522680 7_1:+40979867 Msa1019370:CDS
GGAATCAAACTCGACGGAAG+TGG 0.533552 7_1:+40982977 Msa1019370:CDS
CTCCAAATTTCCTCTAGCTA+AGG 0.534188 7_1:+40983441 Msa1019370:CDS
TGCTTGGAGAGCTGTTAGAC+CGG 0.534643 7_1:-40982939 None:intergenic
CCTTTGCTTCTAATTCCAAA+GGG 0.536074 7_1:+40983358 Msa1019370:CDS
GAGCCTAACTTGAACACGAA+TGG 0.537643 7_1:+40983250 Msa1019370:CDS
GCTGTTCAGTACTATGGCTA+TGG 0.539898 7_1:+40979861 Msa1019370:CDS
ATAATAGGTACTGATGTAGC+AGG 0.548468 7_1:+40982299 Msa1019370:intron
CATGTTTCGAGCGCCGCAGG+TGG 0.554237 7_1:-40983092 None:intergenic
TAGCTAAGGCTGAAGATGGT+TGG 0.558067 7_1:+40983455 Msa1019370:CDS
ATCTCAGCATCTGAATGCGC+CGG 0.558268 7_1:+40982905 Msa1019370:CDS
GCAGGAGAGGTCATGGAGGT+TGG 0.561006 7_1:+40982317 Msa1019370:CDS
TGCGCCGGCTTACCTGTCGC+CGG 0.562445 7_1:+40982920 Msa1019370:CDS
CATGGTATATATGGGAACTT+GGG 0.564940 7_1:-40981506 None:intergenic
TAGACCGGCGACAGGTAAGC+CGG 0.566177 7_1:-40982924 None:intergenic
CAAAAGCTTAGGAGCTGATG+AGG 0.570564 7_1:+40983123 Msa1019370:CDS
GTTCAGTACTATGGCTATGG+TGG 0.570675 7_1:+40979864 Msa1019370:CDS
TCTTTACTAGGACTTGGTAT+GGG 0.571599 7_1:-40981398 None:intergenic
GCGTCATATTTCTTACCAGA+AGG 0.583556 7_1:-40983187 None:intergenic
CGCAGTGGTTCATTGTGCAA+CGG 0.584166 7_1:+40983207 Msa1019370:CDS
AACTCGACGGAAGTGGTGAG+CGG 0.589128 7_1:+40982984 Msa1019370:CDS
CAAGCACTCACCAAATCCAT+AGG 0.589785 7_1:+40982956 Msa1019370:CDS
AGAGCTGTTAGACCGGCGAC+AGG 0.591885 7_1:-40982932 None:intergenic
ACAGCTGCATCAGGTGGTGT+AGG 0.593635 7_1:+40983022 Msa1019370:CDS
GTCAACATTGAAGTAGAGCT+AGG 0.594837 7_1:-40983292 None:intergenic
GCAGTTCAATTAGCAAAGCT+AGG 0.598271 7_1:+40983052 Msa1019370:CDS
GGTATATATGGGAACTTGGG+AGG 0.598419 7_1:-40981503 None:intergenic
TCCATAGGAATCAAACTCGA+CGG 0.609909 7_1:+40982971 Msa1019370:CDS
TTGATCACAGCTGCATCAGG+TGG 0.613019 7_1:+40983016 Msa1019370:CDS
ATTGTGCAACGGATATTGCA+TGG 0.613154 7_1:+40983218 Msa1019370:CDS
CCATCTTCAGCCTTAGCTAG+AGG 0.614800 7_1:-40983451 None:intergenic
AGGTACTGATGTAGCAGGAG+AGG 0.620397 7_1:+40982304 Msa1019370:intron
TCAGATGCTGAGATTTCTGG+TGG 0.635883 7_1:-40982896 None:intergenic
AAGTACAGAAACGCATGTTG+TGG 0.646892 7_1:+40981471 Msa1019370:CDS
GTATTGATGGTCATGCAACT+GGG 0.661439 7_1:+40983485 Msa1019370:CDS
TGGTAAGAAATATGACGCAG+TGG 0.679832 7_1:+40983192 Msa1019370:CDS
GATTTCTGGTGGTATTGAAG+CGG 0.693223 7_1:-40982885 None:intergenic
ACTCATGTAACAGCCACCTG+CGG 0.721402 7_1:+40983079 Msa1019370:CDS
TGTAGCAGGAGAGGTCATGG+AGG 0.747398 7_1:+40982313 Msa1019370:CDS
TTCACAGCGAGAGAGTGTGT+AGG 0.763197 7_1:-40979816 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAACTAGTTTTATTTTAAT+AGG + chr7_1:40980063-40980082 Msa1019370:intron 10.0%
!! ATGTATTTATAAATGTGATT+TGG + chr7_1:40979967-40979986 Msa1019370:intron 15.0%
!! TGTATTTATAAATGTGATTT+GGG + chr7_1:40979968-40979987 Msa1019370:intron 15.0%
!!! TTGTTTAACTTAACAAATTA+GGG - chr7_1:40980914-40980933 None:intergenic 15.0%
!!! ATTGTTTAACTTAACAAATT+AGG - chr7_1:40980915-40980934 None:intergenic 15.0%
!!! AATTTGTTAAGTTAAACAAT+AGG + chr7_1:40980915-40980934 Msa1019370:intron 15.0%
!! TATATTTGATTCTTAAGATA+TGG - chr7_1:40981196-40981215 None:intergenic 15.0%
!! AAAATATTTCAATATGATGT+AGG + chr7_1:40981253-40981272 Msa1019370:intron 15.0%
!! AAAATTAATATATAGTGAGA+GGG - chr7_1:40981543-40981562 None:intergenic 15.0%
!! TGTTGTTGAATTTATTATAA+AGG + chr7_1:40981767-40981786 Msa1019370:intron 15.0%
!! GTTGTTGAATTTATTATAAA+GGG + chr7_1:40981768-40981787 Msa1019370:intron 15.0%
!! CAAATATTTGTAATAAACAA+GGG - chr7_1:40982251-40982270 None:intergenic 15.0%
!! TCAAATATTTGTAATAAACA+AGG - chr7_1:40982252-40982271 None:intergenic 15.0%
!!! ATTGATGAATCTATTTTTAA+GGG + chr7_1:40982430-40982449 Msa1019370:intron 15.0%
!! AATTAAAGTATGATACCAAT+TGG - chr7_1:40979790-40979809 None:intergenic 20.0%
!! AATAGGAAAGAATTTAGATT+AGG + chr7_1:40980080-40980099 Msa1019370:intron 20.0%
!! ATAGGAAAGAATTTAGATTA+GGG + chr7_1:40980081-40980100 Msa1019370:intron 20.0%
!! ATTATAAACGTAACCAATTA+CGG - chr7_1:40980154-40980173 None:intergenic 20.0%
!! GTTCTAATTTAACATAAGAT+TGG - chr7_1:40980470-40980489 None:intergenic 20.0%
!!! TCATATTGAAATATTTTGTG+AGG - chr7_1:40981250-40981269 None:intergenic 20.0%
!!! ACTACTAATTTTTTTGTCAT+TGG - chr7_1:40981319-40981338 None:intergenic 20.0%
!!! AGATGAAGTTTTGATAAAAT+TGG + chr7_1:40981418-40981437 Msa1019370:CDS 20.0%
!! CAAAATTAATATATAGTGAG+AGG - chr7_1:40981544-40981563 None:intergenic 20.0%
!!! TGTCAAAGATTTAAGATTTT+TGG + chr7_1:40981562-40981581 Msa1019370:intron 20.0%
!! ATTATACTGCATTCTATAAT+AGG + chr7_1:40982284-40982303 Msa1019370:intron 20.0%
!! AAATAGATTCATCAATGAAA+TGG - chr7_1:40982426-40982445 None:intergenic 20.0%
!!! CATTGATGAATCTATTTTTA+AGG + chr7_1:40982429-40982448 Msa1019370:intron 20.0%
!!! TGAGTCATGAAATTTTATTA+TGG + chr7_1:40982813-40982832 Msa1019370:intron 20.0%
!!! TGGTATCATACTTTAATTTG+TGG + chr7_1:40979792-40979811 Msa1019370:five_prime_UTR 25.0%
!! ATTTATAAATGTGATTTGGG+TGG + chr7_1:40979971-40979990 Msa1019370:intron 25.0%
! TAGGAAAGAATTTAGATTAG+GGG + chr7_1:40980082-40980101 Msa1019370:intron 25.0%
! ACGTTTATAATTAGTGATCA+AGG + chr7_1:40980163-40980182 Msa1019370:intron 25.0%
! AACAACATTGACATTGTTAT+AGG + chr7_1:40980487-40980506 Msa1019370:intron 25.0%
!! CATGAAGAGAATGTATATTT+TGG - chr7_1:40980532-40980551 None:intergenic 25.0%
! CAAAATATACATTCTCTTCA+TGG + chr7_1:40980530-40980549 Msa1019370:intron 25.0%
! AGTTCATCAGTACTATATTA+AGG + chr7_1:40980578-40980597 Msa1019370:intron 25.0%
! GTTCATCAGTACTATATTAA+GGG + chr7_1:40980579-40980598 Msa1019370:intron 25.0%
! AACAAGTTGTTTATCAAAAC+AGG + chr7_1:40980809-40980828 Msa1019370:intron 25.0%
! GTACTTATGTTAACAACTTA+GGG - chr7_1:40980835-40980854 None:intergenic 25.0%
! AGTACTTATGTTAACAACTT+AGG - chr7_1:40980836-40980855 None:intergenic 25.0%
! TGATTCTTAAGATATGGATA+TGG - chr7_1:40981190-40981209 None:intergenic 25.0%
! ATCAAAACTTCATCTTTACT+AGG - chr7_1:40981413-40981432 None:intergenic 25.0%
! CTAGTATAAATCCATTTGAT+TGG + chr7_1:40981447-40981466 Msa1019370:CDS 25.0%
!!! TTGAACAAACTGCTATTTTT+CGG + chr7_1:40981836-40981855 Msa1019370:intron 25.0%
!! AAAAGTGCAATGATATAGTA+AGG - chr7_1:40981967-40981986 None:intergenic 25.0%
! TTAATCAAAAGCTCAATACA+TGG + chr7_1:40981999-40982018 Msa1019370:intron 25.0%
!!! AATCTATTTTTAAGGGTTGT+TGG + chr7_1:40982437-40982456 Msa1019370:intron 25.0%
!!! GGTATTTTGAATCAGAAAAA+AGG + chr7_1:40982744-40982763 Msa1019370:intron 25.0%
!! GAAATTTTATTATGGTAGAG+TGG + chr7_1:40982821-40982840 Msa1019370:intron 25.0%
! ATTGACTATAAAACACCAAT+TGG + chr7_1:40983148-40983167 Msa1019370:CDS 25.0%
AAGAAGTAGAAGAACCTTTA+AGG - chr7_1:40979901-40979920 None:intergenic 30.0%
GGGATTAAAGGATTCTAATA+TGG - chr7_1:40980238-40980257 None:intergenic 30.0%
! TTTAAAACCTTGATCAAGGT+GGG - chr7_1:40980286-40980305 None:intergenic 30.0%
!!! TTTTAAAACCTTGATCAAGG+TGG - chr7_1:40980287-40980306 None:intergenic 30.0%
!!! GCATTTTAAAACCTTGATCA+AGG - chr7_1:40980290-40980309 None:intergenic 30.0%
! ATTTTTGCGGAAATTACAGT+CGG + chr7_1:40980326-40980345 Msa1019370:intron 30.0%
!! GAAGAGAATGTATATTTTGG+TGG - chr7_1:40980529-40980548 None:intergenic 30.0%
GATGAACTACGTATTCTTAA+TGG - chr7_1:40980566-40980585 None:intergenic 30.0%
! GATGTTTTGTGTGATTGTTT+GGG + chr7_1:40980610-40980629 Msa1019370:intron 30.0%
ATGTGAAAAATTGTATTCCC+TGG + chr7_1:40980944-40980963 Msa1019370:intron 30.0%
TGTGAAAAATTGTATTCCCT+GGG + chr7_1:40980945-40980964 Msa1019370:intron 30.0%
ACATTGGTATCAAAATTAGC+TGG + chr7_1:40980971-40980990 Msa1019370:intron 30.0%
TTCTGTACTTTCCAATCAAA+TGG - chr7_1:40981461-40981480 None:intergenic 30.0%
GGAAGTTACATGGTATATAT+GGG - chr7_1:40981517-40981536 None:intergenic 30.0%
AGGAAGTTACATGGTATATA+TGG - chr7_1:40981518-40981537 None:intergenic 30.0%
TAATATATAGTGAGAGGGAA+AGG - chr7_1:40981538-40981557 None:intergenic 30.0%
!!! TGAACAAACTGCTATTTTTC+GGG + chr7_1:40981837-40981856 Msa1019370:intron 30.0%
! TTTTGAATTAGATGCGAGAA+AGG - chr7_1:40981892-40981911 None:intergenic 30.0%
TTCATGTAGTAGAAGTTCTT+TGG + chr7_1:40981918-40981937 Msa1019370:intron 30.0%
AAGTTTATACACCAATTGGT+GGG + chr7_1:40982177-40982196 Msa1019370:intron 30.0%
AAAAGAATGTTTCCGATGAA+AGG - chr7_1:40982626-40982645 None:intergenic 30.0%
! TTCATCGGAAACATTCTTTT+CGG + chr7_1:40982626-40982645 Msa1019370:intron 30.0%
! CATTCTTTTCGGAATTTTCT+CGG + chr7_1:40982637-40982656 Msa1019370:intron 30.0%
!! CTTTCAGTTTTTAAGGGTTA+CGG + chr7_1:40982673-40982692 Msa1019370:intron 30.0%
!! TTTTAAGGGTTACGGTTAAA+CGG + chr7_1:40982681-40982700 Msa1019370:intron 30.0%
!! GCTTGTTTTCTGTTTCTTTT+TGG + chr7_1:40982723-40982742 Msa1019370:intron 30.0%
! ATTTTATTATGGTAGAGTGG+TGG + chr7_1:40982824-40982843 Msa1019370:intron 30.0%
ATGGAAATTGTCAAAAGCTT+AGG + chr7_1:40983112-40983131 Msa1019370:CDS 30.0%
CTCTTTAATTCAACACCAAT+TGG - chr7_1:40983166-40983185 None:intergenic 30.0%
CACTTTCTGTTTGTTCCAAT+TGG + chr7_1:40979772-40979791 Msa1019370:five_prime_UTR 35.0%
GAAAGAATTTAGATTAGGGG+TGG + chr7_1:40980085-40980104 Msa1019370:intron 35.0%
TAAACGTAACCAATTACGGT+TGG - chr7_1:40980150-40980169 None:intergenic 35.0%
AAAGGATTCTAATATGGCGA+GGG - chr7_1:40980232-40980251 None:intergenic 35.0%
TAAAGGATTCTAATATGGCG+AGG - chr7_1:40980233-40980252 None:intergenic 35.0%
TGGTTTAGCTAAGGGATTAA+AGG - chr7_1:40980250-40980269 None:intergenic 35.0%
AAAAATAACGACACACACGA+TGG - chr7_1:40980312-40980331 None:intergenic 35.0%
!!! GAGAATGTATATTTTGGTGG+CGG - chr7_1:40980526-40980545 None:intergenic 35.0%
TACTATATTAAGGGCCTGTT+TGG + chr7_1:40980588-40980607 Msa1019370:intron 35.0%
ATCACACAAAACATCCAAAC+AGG - chr7_1:40980605-40980624 None:intergenic 35.0%
! GGATGTTTTGTGTGATTGTT+TGG + chr7_1:40980609-40980628 Msa1019370:intron 35.0%
TTAACAAATTAGGGCCTGTT+TGG - chr7_1:40980905-40980924 None:intergenic 35.0%
TTGATACCAATGTAATCCCA+GGG - chr7_1:40980964-40980983 None:intergenic 35.0%
TTTGATACCAATGTAATCCC+AGG - chr7_1:40980965-40980984 None:intergenic 35.0%
AACTTATCACAATCAGCATG+TGG + chr7_1:40981021-40981040 Msa1019370:intron 35.0%
AGATAGACTAAGAACCATCA+CGG + chr7_1:40981149-40981168 Msa1019370:intron 35.0%
! GATATGGATATGGACTATGA+AGG - chr7_1:40981180-40981199 None:intergenic 35.0%
! TCTTTACTAGGACTTGGTAT+GGG - chr7_1:40981401-40981420 None:intergenic 35.0%
! ATCTTTACTAGGACTTGGTA+TGG - chr7_1:40981402-40981421 None:intergenic 35.0%
ACTTCATCTTTACTAGGACT+TGG - chr7_1:40981407-40981426 None:intergenic 35.0%
CATGGTATATATGGGAACTT+GGG - chr7_1:40981509-40981528 None:intergenic 35.0%
ACATGGTATATATGGGAACT+TGG - chr7_1:40981510-40981529 None:intergenic 35.0%
AACAGATTCTTGTCAAATGC+AGG - chr7_1:40981612-40981631 None:intergenic 35.0%
GATCACAATGTTGTCAATCT+CGG - chr7_1:40981865-40981884 None:intergenic 35.0%
CTCGCATCTAATTCAAAACA+TGG + chr7_1:40981894-40981913 Msa1019370:intron 35.0%
AAGACAGAGTTTGAATGACT+TGG - chr7_1:40982125-40982144 None:intergenic 35.0%
CTGCAAGTTTATACACCAAT+TGG + chr7_1:40982173-40982192 Msa1019370:intron 35.0%
CAAGTTTATACACCAATTGG+TGG + chr7_1:40982176-40982195 Msa1019370:intron 35.0%
!! ATAATAGGTACTGATGTAGC+AGG + chr7_1:40982299-40982318 Msa1019370:intron 35.0%
GGTGTTAAGAAGTTCAAAAC+TGG + chr7_1:40982344-40982363 Msa1019370:CDS 35.0%
AAAACTGGTGACAAAGTTGT+AGG + chr7_1:40982359-40982378 Msa1019370:CDS 35.0%
CAGTTGACAACATGAAATCA+AGG - chr7_1:40982523-40982542 None:intergenic 35.0%
ATGAAAGGACACAGGTTAAA+GGG - chr7_1:40982611-40982630 None:intergenic 35.0%
TTTAACCTGTGTCCTTTCAT+CGG + chr7_1:40982611-40982630 Msa1019370:intron 35.0%
! AGCTCAGCTTTCAGTTTTTA+AGG + chr7_1:40982666-40982685 Msa1019370:intron 35.0%
! GCTCAGCTTTCAGTTTTTAA+GGG + chr7_1:40982667-40982686 Msa1019370:intron 35.0%
!! AGCTGAGTTTGCTGTTATTA+AGG + chr7_1:40982853-40982872 Msa1019370:CDS 35.0%
GAGTTTGATTCCTATGGATT+TGG - chr7_1:40982969-40982988 None:intergenic 35.0%
GTTGAATTAAAGAGTCCTTC+TGG + chr7_1:40983172-40983191 Msa1019370:CDS 35.0%
! TTACCATTCGTGTTCAAGTT+AGG - chr7_1:40983256-40983275 None:intergenic 35.0%
!!! CACAAGTTGTTTTTTGGAGA+AGG - chr7_1:40983338-40983357 None:intergenic 35.0%
!!! CAAAGGCACAAGTTGTTTTT+TGG - chr7_1:40983344-40983363 None:intergenic 35.0%
CCTTTGCTTCTAATTCCAAA+GGG + chr7_1:40983358-40983377 Msa1019370:CDS 35.0%
AAGGATCTTCAGTTTCTTGT+TGG + chr7_1:40983382-40983401 Msa1019370:CDS 35.0%
!! CTTGTTGGTTTGATTAAGCA+AGG + chr7_1:40983397-40983416 Msa1019370:CDS 35.0%
!! TAGAAGAACCTTTAAGGCAG+TGG - chr7_1:40979895-40979914 None:intergenic 40.0%
! CCAATTACGGTTGGTACATA+TGG - chr7_1:40980141-40980160 None:intergenic 40.0%
CCATATGTACCAACCGTAAT+TGG + chr7_1:40980138-40980157 Msa1019370:intron 40.0%
!!! CGTGTGTGTCGTTATTTTTG+CGG + chr7_1:40980313-40980332 Msa1019370:intron 40.0%
AAGCCAGATGACCAAAACTA+TGG + chr7_1:40980351-40980370 Msa1019370:intron 40.0%
!!! TGACCATAGTTTTGGTCATC+TGG - chr7_1:40980357-40980376 None:intergenic 40.0%
! TGTCTCTCTGACCATAGTTT+TGG - chr7_1:40980365-40980384 None:intergenic 40.0%
ACCAAGCTGTTTATCCAAAC+AGG + chr7_1:40980888-40980907 Msa1019370:intron 40.0%
TGTATTCCCTGGGATTACAT+TGG + chr7_1:40980955-40980974 Msa1019370:intron 40.0%
AAATTTCGTCACGTGTCATC+TGG + chr7_1:40981106-40981125 Msa1019370:intron 40.0%
AAGTACAGAAACGCATGTTG+TGG + chr7_1:40981471-40981490 Msa1019370:CDS 40.0%
AGATTCTTGTCAAATGCAGG+TGG - chr7_1:40981609-40981628 None:intergenic 40.0%
TGTAATAAACAAGGGAAGCC+CGG - chr7_1:40982243-40982262 None:intergenic 40.0%
!! AATGAAATGGACTGAGTAGC+CGG - chr7_1:40982413-40982432 None:intergenic 40.0%
TAAAGGGTTGAAACTCCAAG+TGG - chr7_1:40982595-40982614 None:intergenic 40.0%
GATGAAAGGACACAGGTTAA+AGG - chr7_1:40982612-40982631 None:intergenic 40.0%
AAAACTGAAAGCTGAGCTGA+CGG - chr7_1:40982664-40982683 None:intergenic 40.0%
TTATTATGGTAGAGTGGTGG+AGG + chr7_1:40982827-40982846 Msa1019370:intron 40.0%
!! GATTTCTGGTGGTATTGAAG+CGG - chr7_1:40982888-40982907 None:intergenic 40.0%
CATTCAGATGCTGAGATTTC+TGG - chr7_1:40982902-40982921 None:intergenic 40.0%
TCCATAGGAATCAAACTCGA+CGG + chr7_1:40982971-40982990 Msa1019370:CDS 40.0%
!! ATTTTGATCACAGCTGCATC+AGG + chr7_1:40983013-40983032 Msa1019370:CDS 40.0%
GCAGTTCAATTAGCAAAGCT+AGG + chr7_1:40983052-40983071 Msa1019370:CDS 40.0%
GCGTCATATTTCTTACCAGA+AGG - chr7_1:40983190-40983209 None:intergenic 40.0%
TGGTAAGAAATATGACGCAG+TGG + chr7_1:40983192-40983211 Msa1019370:CDS 40.0%
ATTGTGCAACGGATATTGCA+TGG + chr7_1:40983218-40983237 Msa1019370:CDS 40.0%
GTCAACATTGAAGTAGAGCT+AGG - chr7_1:40983295-40983314 None:intergenic 40.0%
GCCTTTGCTTCTAATTCCAA+AGG + chr7_1:40983357-40983376 Msa1019370:CDS 40.0%
!! CCCTTTGGAATTAGAAGCAA+AGG - chr7_1:40983361-40983380 None:intergenic 40.0%
GCTTCTAATTCCAAAGGGTA+AGG + chr7_1:40983363-40983382 Msa1019370:CDS 40.0%
AACTGAAGATCCTTACCCTT+TGG - chr7_1:40983376-40983395 None:intergenic 40.0%
CTCCAAATTTCCTCTAGCTA+AGG + chr7_1:40983441-40983460 Msa1019370:CDS 40.0%
AGCCTTAGCTAGAGGAAATT+TGG - chr7_1:40983446-40983465 None:intergenic 40.0%
!! GGTTGGTCTAAGAGTATTGA+TGG + chr7_1:40983472-40983491 Msa1019370:CDS 40.0%
!! AGTATTGATGGTCATGCAAC+TGG + chr7_1:40983484-40983503 Msa1019370:CDS 40.0%
! GTATTGATGGTCATGCAACT+GGG + chr7_1:40983485-40983504 Msa1019370:CDS 40.0%
! ATGCGTGCTGTTCAGTACTA+TGG + chr7_1:40979855-40979874 Msa1019370:CDS 45.0%
GCTGTTCAGTACTATGGCTA+TGG + chr7_1:40979861-40979880 Msa1019370:CDS 45.0%
GTTCAGTACTATGGCTATGG+TGG + chr7_1:40979864-40979883 Msa1019370:CDS 45.0%
GGCTCACTTGGTTTAGCTAA+GGG - chr7_1:40980258-40980277 None:intergenic 45.0%
GCCTGTTTGGATAAACAGCT+TGG - chr7_1:40980892-40980911 None:intergenic 45.0%
CTATGAAGGTGAATCCGTGA+TGG - chr7_1:40981166-40981185 None:intergenic 45.0%
GGTATATATGGGAACTTGGG+AGG - chr7_1:40981506-40981525 None:intergenic 45.0%
GAGAGGGAAAGGAAGTTACA+TGG - chr7_1:40981527-40981546 None:intergenic 45.0%
CCGGCTAAGAACTTACAAAG+GGG - chr7_1:40982394-40982413 None:intergenic 45.0%
CCCCTTTGTAAGTTCTTAGC+CGG + chr7_1:40982391-40982410 Msa1019370:intron 45.0%
GCCGGCTAAGAACTTACAAA+GGG - chr7_1:40982395-40982414 None:intergenic 45.0%
AGCCGGCTAAGAACTTACAA+AGG - chr7_1:40982396-40982415 None:intergenic 45.0%
ACTTCAGATTCCAAGCCACT+TGG + chr7_1:40982577-40982596 Msa1019370:intron 45.0%
TGTTTCCGATGAAAGGACAC+AGG - chr7_1:40982619-40982638 None:intergenic 45.0%
AAACTGAAAGCTGAGCTGAC+GGG - chr7_1:40982663-40982682 None:intergenic 45.0%
ACGGTTGAAACTCCAAGTCA+AGG + chr7_1:40982700-40982719 Msa1019370:intron 45.0%
CGGTTGAAACTCCAAGTCAA+GGG + chr7_1:40982701-40982720 Msa1019370:intron 45.0%
CAGAAAACAAGCCCTTGACT+TGG - chr7_1:40982715-40982734 None:intergenic 45.0%
! TCAGATGCTGAGATTTCTGG+TGG - chr7_1:40982899-40982918 None:intergenic 45.0%
!! CTATGGATTTGGTGAGTGCT+TGG - chr7_1:40982958-40982977 None:intergenic 45.0%
CAAGCACTCACCAAATCCAT+AGG + chr7_1:40982956-40982975 Msa1019370:CDS 45.0%
TCCGTCGAGTTTGATTCCTA+TGG - chr7_1:40982975-40982994 None:intergenic 45.0%
CAAAAGCTTAGGAGCTGATG+AGG + chr7_1:40983123-40983142 Msa1019370:CDS 45.0%
GAGCCTAACTTGAACACGAA+TGG + chr7_1:40983250-40983269 Msa1019370:CDS 45.0%
TAGCTAAGGCTGAAGATGGT+TGG + chr7_1:40983455-40983474 Msa1019370:CDS 45.0%
! TTCACAGCGAGAGAGTGTGT+AGG - chr7_1:40979819-40979838 None:intergenic 50.0%
ACACTCTCTCGCTGTGAACA+TGG + chr7_1:40979821-40979840 Msa1019370:exon 50.0%
CAGTACTATGGCTATGGTGG+AGG + chr7_1:40979867-40979886 Msa1019370:CDS 50.0%
TGGAGGATCCACTGCCTTAA+AGG + chr7_1:40979884-40979903 Msa1019370:CDS 50.0%
ATTAGGGGTGGCACATTTGC+TGG + chr7_1:40980097-40980116 Msa1019370:intron 50.0%
CGGCTCACTTGGTTTAGCTA+AGG - chr7_1:40980259-40980278 None:intergenic 50.0%
!!! CGACAGCTTTTGAAACCTCG+CGG + chr7_1:40980405-40980424 Msa1019370:intron 50.0%
!!! GACAGCTTTTGAAACCTCGC+GGG + chr7_1:40980406-40980425 Msa1019370:intron 50.0%
GCGGGTGACAGTGATACTAT+CGG + chr7_1:40980424-40980443 Msa1019370:intron 50.0%
GGGAACTTGGGAGGCAAAAA+TGG - chr7_1:40981497-40981516 None:intergenic 50.0%
!! AGGTACTGATGTAGCAGGAG+AGG + chr7_1:40982304-40982323 Msa1019370:intron 50.0%
TGATGTAGCAGGAGAGGTCA+TGG + chr7_1:40982310-40982329 Msa1019370:CDS 50.0%
!! GAGGTCATGGAGGTTGGTAA+AGG + chr7_1:40982323-40982342 Msa1019370:CDS 50.0%
GGTTGAAACTCCAAGTGGCT+TGG - chr7_1:40982590-40982609 None:intergenic 50.0%
ATCTCAGCATCTGAATGCGC+CGG + chr7_1:40982905-40982924 Msa1019370:CDS 50.0%
TGCTTGGAGAGCTGTTAGAC+CGG - chr7_1:40982942-40982961 None:intergenic 50.0%
GGAATCAAACTCGACGGAAG+TGG + chr7_1:40982977-40982996 Msa1019370:CDS 50.0%
TTGATCACAGCTGCATCAGG+TGG + chr7_1:40983016-40983035 Msa1019370:CDS 50.0%
ACTCATGTAACAGCCACCTG+CGG + chr7_1:40983079-40983098 Msa1019370:CDS 50.0%
CGCAGTGGTTCATTGTGCAA+CGG + chr7_1:40983207-40983226 Msa1019370:CDS 50.0%
CCATCTTCAGCCTTAGCTAG+AGG - chr7_1:40983454-40983473 None:intergenic 50.0%
CCTCTAGCTAAGGCTGAAGA+TGG + chr7_1:40983451-40983470 Msa1019370:CDS 50.0%
CCTTGATCAAGGTGGGTGAG+CGG - chr7_1:40980279-40980298 None:intergenic 55.0%
TAGTATCACTGTCACCCGCG+AGG - chr7_1:40980423-40980442 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG - chr7_1:40982216-40982235 None:intergenic 55.0%
!! ATGCGGGAGCTTTAGGTCAC+CGG + chr7_1:40982221-40982240 Msa1019370:intron 55.0%
TGTAGCAGGAGAGGTCATGG+AGG + chr7_1:40982313-40982332 Msa1019370:CDS 55.0%
AACTCGACGGAAGTGGTGAG+CGG + chr7_1:40982984-40983003 Msa1019370:CDS 55.0%
ACAGCTGCATCAGGTGGTGT+AGG + chr7_1:40983022-40983041 Msa1019370:CDS 55.0%
! GGCACATTTGCTGGCGTGAG+CGG + chr7_1:40980106-40980125 Msa1019370:intron 60.0%
! CATTTGCTGGCGTGAGCGGA+AGG + chr7_1:40980110-40980129 Msa1019370:intron 60.0%
CCGCTCACCCACCTTGATCA+AGG + chr7_1:40980276-40980295 Msa1019370:intron 60.0%
CATACGCAGGGTTCGGGAAG+GGG - chr7_1:40982204-40982223 None:intergenic 60.0%
GCATACGCAGGGTTCGGGAA+GGG - chr7_1:40982205-40982224 None:intergenic 60.0%
CTTCCCGAACCCTGCGTATG+CGG + chr7_1:40982204-40982223 Msa1019370:intron 60.0%
TTCCCGAACCCTGCGTATGC+GGG + chr7_1:40982205-40982224 Msa1019370:intron 60.0%
CCTAAAGCTCCCGCATACGC+AGG - chr7_1:40982217-40982236 None:intergenic 60.0%
CCTGCGTATGCGGGAGCTTT+AGG + chr7_1:40982214-40982233 Msa1019370:intron 60.0%
!! TGCGGGAGCTTTAGGTCACC+GGG + chr7_1:40982222-40982241 Msa1019370:intron 60.0%
GCAGGAGAGGTCATGGAGGT+TGG + chr7_1:40982317-40982336 Msa1019370:CDS 60.0%
TAGACCGGCGACAGGTAAGC+CGG - chr7_1:40982927-40982946 None:intergenic 60.0%
AGAGCTGTTAGACCGGCGAC+AGG - chr7_1:40982935-40982954 None:intergenic 60.0%
! TTCCATGTTTCGAGCGCCGC+AGG - chr7_1:40983098-40983117 None:intergenic 60.0%
AGGTGGGTGAGCGGCTCACT+TGG - chr7_1:40980270-40980289 None:intergenic 65.0%
CGGGAAGGGGTCCCACCAAT+TGG - chr7_1:40982191-40982210 None:intergenic 65.0%
CGCATACGCAGGGTTCGGGA+AGG - chr7_1:40982206-40982225 None:intergenic 65.0%
CTCCCGCATACGCAGGGTTC+GGG - chr7_1:40982210-40982229 None:intergenic 65.0%
GCTCCCGCATACGCAGGGTT+CGG - chr7_1:40982211-40982230 None:intergenic 65.0%
! CATGTTTCGAGCGCCGCAGG+TGG - chr7_1:40983095-40983114 None:intergenic 65.0%
CACCTGCGGCGCTCGAAACA+TGG + chr7_1:40983093-40983112 Msa1019370:CDS 65.0%
!! TGCGCCGGCTTACCTGTCGC+CGG + chr7_1:40982920-40982939 Msa1019370:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 40979761 40983713 40979761 ID=Msa1019370;Name=Msa1019370
chr7_1 mRNA 40979761 40983713 40979761 ID=Msa1019370-mRNA-1;Parent=Msa1019370;Name=Msa1019370-mRNA-1;_AED=0.21;_eAED=0.21;_QI=79|1|1|1|1|1|4|185|329
chr7_1 exon 40979761 40979905 40979761 ID=Msa1019370-mRNA-1:exon:7952;Parent=Msa1019370-mRNA-1
chr7_1 exon 40981386 40981527 40981386 ID=Msa1019370-mRNA-1:exon:7953;Parent=Msa1019370-mRNA-1
chr7_1 exon 40982306 40982397 40982306 ID=Msa1019370-mRNA-1:exon:7954;Parent=Msa1019370-mRNA-1
chr7_1 exon 40982839 40983713 40982839 ID=Msa1019370-mRNA-1:exon:7955;Parent=Msa1019370-mRNA-1
chr7_1 five_prime_UTR 40979761 40979839 40979761 ID=Msa1019370-mRNA-1:five_prime_utr;Parent=Msa1019370-mRNA-1
chr7_1 CDS 40979840 40979905 40979840 ID=Msa1019370-mRNA-1:cds;Parent=Msa1019370-mRNA-1
chr7_1 CDS 40981386 40981527 40981386 ID=Msa1019370-mRNA-1:cds;Parent=Msa1019370-mRNA-1
chr7_1 CDS 40982306 40982397 40982306 ID=Msa1019370-mRNA-1:cds;Parent=Msa1019370-mRNA-1
chr7_1 CDS 40982839 40983528 40982839 ID=Msa1019370-mRNA-1:cds;Parent=Msa1019370-mRNA-1
chr7_1 three_prime_UTR 40983529 40983713 40983529 ID=Msa1019370-mRNA-1:three_prime_utr;Parent=Msa1019370-mRNA-1
Gene Sequence

>Msa1019370

ATGGAGAACAAACTCATGCGTGCTGTTCAGTACTATGGCTATGGTGGAGGATCCACTGCCTTAAAGCATGTTGAAGTTCCCATACCAAGTCCTAGTAAAGATGAAGTTTTGATAAAATTGGAAGCAGCTAGTATAAATCCATTTGATTGGAAAGTACAGAAACGCATGTTGTGGCCATTTTTGCCTCCCAAGTTCCCATATATACCATGTACTGATGTAGCAGGAGAGGTCATGGAGGTTGGTAAAGGTGTTAAGAAGTTCAAAACTGGTGACAAAGTTGTAGGCGTAGTCAGCCCCTTTAGTGGTGGAGGACTAGCTGAGTTTGCTGTTATTAAGGAGAGTCTCACCGCTTCAATACCACCAGAAATCTCAGCATCTGAATGCGCCGGCTTACCTGTCGCCGGTCTAACAGCTCTCCAAGCACTCACCAAATCCATAGGAATCAAACTCGACGGAAGTGGTGAGCGGAAAAACATTTTGATCACAGCTGCATCAGGTGGTGTAGGACACTATGCAGTTCAATTAGCAAAGCTAGGTAACACTCATGTAACAGCCACCTGCGGCGCTCGAAACATGGAAATTGTCAAAAGCTTAGGAGCTGATGAGGTAATTGACTATAAAACACCAATTGGTGTTGAATTAAAGAGTCCTTCTGGTAAGAAATATGACGCAGTGGTTCATTGTGCAACGGATATTGCATGGTCAGTTTTTGAGCCTAACTTGAACACGAATGGTAAAGTTGTAGATATAACTCCTAGCTCTACTTCAATGTTGACATTTGCTCTTACTAAAATTACCTTCTCCAAAAAACAACTTGTGCCTTTGCTTCTAATTCCAAAGGGTAAGGATCTTCAGTTTCTTGTTGGTTTGATTAAGCAAGGAAAGATTAAAACAGTTATAGACTCCAAATTTCCTCTAGCTAAGGCTGAAGATGGTTGGTCTAAGAGTATTGATGGTCATGCAACTGGGAAGATCATTTTTGAGTTTTAA

Protein sequence

>Msa1019370

MENKLMRAVQYYGYGGGSTALKHVEVPIPSPSKDEVLIKLEAASINPFDWKVQKRMLWPFLPPKFPYIPCTDVAGEVMEVGKGVKKFKTGDKVVGVVSPFSGGGLAEFAVIKESLTASIPPEISASECAGLPVAGLTALQALTKSIGIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNMEIVKSLGADEVIDYKTPIGVELKSPSGKKYDAVVHCATDIAWSVFEPNLNTNGKVVDITPSSTSMLTFALTKITFSKKQLVPLLLIPKGKDLQFLVGLIKQGKIKTVIDSKFPLAKAEDGWSKSIDGHATGKIIFEF*