AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0786600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0786600 MtrunA17_Chr5g0442981 93.443 183 7 2 1 183 1 178 1.39e-111 315
Msa0786600 MtrunA17_Chr7g0228271 69.565 46 14 0 86 131 15 60 5.89e-17 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0786600 AT2G42975.1 80.342 117 19 2 68 183 74 187 5.61e-60 185

Find 43 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAGGCCTTGGTAGTAAA+TGG 0.234094 5_2:-72182992 None:intergenic
ATCTTCTTCTCGTGCACAAC+TGG 0.315548 5_2:+72181668 Msa0786600:CDS
GTAATAGTGAGTTTGATAAT+TGG 0.323795 5_2:-72180181 None:intergenic
TCGTGCACAACTGGATCTTT+TGG 0.328038 5_2:+72181677 Msa0786600:CDS
TAATTCATATAAAACCAAAA+TGG 0.363379 5_2:+72180126 Msa0786600:five_prime_UTR
TCTGAGGATGATTCTTCAAT+TGG 0.371085 5_2:+72180387 Msa0786600:CDS
CTTCCACCTCTTATAATACT+AGG 0.378568 5_2:+72182873 Msa0786600:CDS
CTAGGAATAGCTATATTAAC+TGG 0.405799 5_2:+72182891 Msa0786600:CDS
GACAGGCCTTGGTAGTAAAT+GGG 0.410792 5_2:-72182991 None:intergenic
CAATCACAAGGGACTGAAAC+CGG 0.442863 5_2:+72180360 Msa0786600:CDS
GGTAATTAAATTAATATTTG+TGG 0.447236 5_2:+72180082 Msa0786600:five_prime_UTR
TCGCGAACAGCTTGCGCAGT+TGG 0.451182 5_2:+72182677 Msa0786600:CDS
TTGCGCAGTTGGTTGGAGAA+AGG 0.457947 5_2:+72182688 Msa0786600:CDS
TGCGCAGTTGGTTGGAGAAA+GGG 0.462113 5_2:+72182689 Msa0786600:CDS
CGTGTGAGAAAGGAAGGGCT+TGG 0.464216 5_2:-72180279 None:intergenic
TTCTATTTCTAGTTCTATGT+AGG 0.483900 5_2:-72180034 None:intergenic
AGAAGTGGTGGTTAGATTGA+TGG 0.485237 5_2:-72180247 None:intergenic
GCTATTCCTAGTATTATAAG+AGG 0.488609 5_2:-72182879 None:intergenic
GATGATTTCAGCCTTCCCTT+AGG 0.492206 5_2:+72182714 Msa0786600:CDS
AATTAATATTTGTGGTAGTG+AGG 0.534294 5_2:+72180090 Msa0786600:five_prime_UTR
GGTTAGATTGATGGTGGCCA+TGG 0.534595 5_2:-72180238 None:intergenic
GAACAGCTTGCGCAGTTGGT+TGG 0.536982 5_2:+72182681 Msa0786600:CDS
TTGAGACACAAGTTCAAGGT+TGG 0.538320 5_2:+72180010 Msa0786600:five_prime_UTR
AGTAAATATATTATGACTCA+AGG 0.542225 5_2:-72182930 None:intergenic
GCTTGGATGAAGAGAAGAAG+TGG 0.571593 5_2:-72180262 None:intergenic
AATTACCCCATTTACTACCA+AGG 0.574059 5_2:+72182985 Msa0786600:three_prime_UTR
ATCTAAATGAAGTGTCTCAA+AGG 0.575590 5_2:+72182808 Msa0786600:CDS
ACTTTGTGTATGTGTGATCA+AGG 0.576668 5_2:-72180058 None:intergenic
AGAATCATCCTCAGAAACTC+CGG 0.580828 5_2:-72180379 None:intergenic
TCTACAAGCTCATTAGTCAC+TGG 0.581078 5_2:+72181711 Msa0786600:CDS
GACTGAAACCGGAGTTTCTG+AGG 0.581814 5_2:+72180371 Msa0786600:CDS
ATTCCTAGTATTATAAGAGG+TGG 0.585295 5_2:-72182876 None:intergenic
AAAACATGTGCTCAATCACA+AGG 0.605787 5_2:+72180348 Msa0786600:CDS
CTTCTAGGTTATGAAAGTGA+TGG 0.609052 5_2:+72182633 Msa0786600:intron
TCTCATGAAGCAAAGTTCCA+TGG 0.612827 5_2:+72180221 Msa0786600:exon
AAGCATGGTTGAATTTGATG+AGG 0.629627 5_2:-72180314 None:intergenic
ACAGGCCTTGGTAGTAAATG+GGG 0.636091 5_2:-72182990 None:intergenic
TTATATGAATTAGACAAAGG+CGG 0.649549 5_2:-72180115 None:intergenic
TGGATGAAGAGAAGAAGTGG+TGG 0.661347 5_2:-72180259 None:intergenic
TGATCACACATACACAAAGT+CGG 0.661350 5_2:+72180061 Msa0786600:five_prime_UTR
AAACATGTGCTCAATCACAA+GGG 0.709012 5_2:+72180349 Msa0786600:CDS
AGTTCTTAACAACATCACAA+AGG 0.710069 5_2:+72182763 Msa0786600:CDS
AGTGGTGGTTAGATTGATGG+TGG 0.725189 5_2:-72180244 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATATATTAATATAA+AGG - chr5_2:72180894-72180913 None:intergenic 0.0%
!! TTCAATTTAATAAAAAAAGT+GGG - chr5_2:72180435-72180454 None:intergenic 10.0%
!! ATTCAATTTAATAAAAAAAG+TGG - chr5_2:72180436-72180455 None:intergenic 10.0%
!! AATTTATTTAATATCGAAAT+CGG + chr5_2:72181259-72181278 Msa0786600:intron 10.0%
!!! CTTTCAAAAAAAATTATTTT+TGG - chr5_2:72181939-72181958 None:intergenic 10.0%
!!! CAAAAATAATTTTTTTTGAA+AGG + chr5_2:72181937-72181956 Msa0786600:intron 10.0%
!! GGTAATTAAATTAATATTTG+TGG + chr5_2:72180082-72180101 Msa0786600:five_prime_UTR 15.0%
!! TAATTCATATAAAACCAAAA+TGG + chr5_2:72180126-72180145 Msa0786600:five_prime_UTR 15.0%
!! AATAATTTCCAGTAAATTTA+TGG + chr5_2:72180682-72180701 Msa0786600:intron 15.0%
!! ATAATTTCCAGTAAATTTAT+GGG + chr5_2:72180683-72180702 Msa0786600:intron 15.0%
!!! AAATCAAAATTTGCTTATAA+TGG + chr5_2:72181085-72181104 Msa0786600:intron 15.0%
!!! GTTTTATATGAATTAGACAA+AGG - chr5_2:72180121-72180140 None:intergenic 20.0%
!!! ATAATTGGCATTGAAAAAAT+TGG - chr5_2:72180169-72180188 None:intergenic 20.0%
!! TTTAATAAAAAAAGTGGGAT+AGG - chr5_2:72180430-72180449 None:intergenic 20.0%
!! ATTGAATTCAAACATTAGTA+TGG + chr5_2:72180449-72180468 Msa0786600:intron 20.0%
!!! GATATATTTTTCTCCTTTTT+TGG - chr5_2:72180639-72180658 None:intergenic 20.0%
!! TAAATTTCCCATAAATTTAC+TGG - chr5_2:72180693-72180712 None:intergenic 20.0%
!! TATGGGAAATTTATAATTTG+TGG + chr5_2:72180700-72180719 Msa0786600:intron 20.0%
!!! ATGGGAAATTTATAATTTGT+GGG + chr5_2:72180701-72180720 Msa0786600:intron 20.0%
!! AGGATTATATAATATTGCTT+CGG + chr5_2:72180973-72180992 Msa0786600:intron 20.0%
!!! TGTCAATTATAAGCAAATTT+TGG + chr5_2:72180997-72181016 Msa0786600:intron 20.0%
!! CAAAAATTGGTAAAAATGAA+AGG - chr5_2:72181144-72181163 None:intergenic 20.0%
!!! ACCAATTTTTGTTTTTAGTT+TGG + chr5_2:72181153-72181172 Msa0786600:intron 20.0%
!! ACCAAACTAAAAACAAAAAT+TGG - chr5_2:72181157-72181176 None:intergenic 20.0%
!!! AAATATACTAGTTTTCTCTT+TGG + chr5_2:72181210-72181229 Msa0786600:intron 20.0%
!! GGACTAAAATAAATATTAGA+TGG - chr5_2:72181286-72181305 None:intergenic 20.0%
!! CCAACATTATTCTTATTATT+TGG - chr5_2:72181400-72181419 None:intergenic 20.0%
!! CCAAATAATAAGAATAATGT+TGG + chr5_2:72181397-72181416 Msa0786600:intron 20.0%
!! AATCAAATAGAATGCATTAA+AGG - chr5_2:72181430-72181449 None:intergenic 20.0%
!! TTTAATGCATTCTATTTGAT+TGG + chr5_2:72181429-72181448 Msa0786600:intron 20.0%
!! AAAAGTCGAAGAAAATAAAA+CGG + chr5_2:72181454-72181473 Msa0786600:intron 20.0%
!!! TTTTGATGACTTTTATTGTT+AGG + chr5_2:72181639-72181658 Msa0786600:intron 20.0%
!!! CTTTTCATAGACATTATTTT+TGG - chr5_2:72181969-72181988 None:intergenic 20.0%
!! TTAAACCAAATCTAAGAAAT+AGG - chr5_2:72182569-72182588 None:intergenic 20.0%
!!! TTAACTTCTTTCTTTGATTT+TGG + chr5_2:72182585-72182604 Msa0786600:intron 20.0%
!! AGTAAATATATTATGACTCA+AGG - chr5_2:72182933-72182952 None:intergenic 20.0%
!! CAAGAAAAAAAATAATAGAC+AGG - chr5_2:72183011-72183030 None:intergenic 20.0%
!!! TTCTATTTCTAGTTCTATGT+AGG - chr5_2:72180037-72180056 None:intergenic 25.0%
!! AATTAATATTTGTGGTAGTG+AGG + chr5_2:72180090-72180109 Msa0786600:five_prime_UTR 25.0%
! TTATATGAATTAGACAAAGG+CGG - chr5_2:72180118-72180137 None:intergenic 25.0%
!! GTAATAGTGAGTTTGATAAT+TGG - chr5_2:72180184-72180203 None:intergenic 25.0%
! ATATATCTTCTCTCCAAAAA+AGG + chr5_2:72180623-72180642 Msa0786600:intron 25.0%
! TACTTTAGATTCACATTGAA+AGG + chr5_2:72180953-72180972 Msa0786600:intron 25.0%
!!! TAAGCAAATTTTGGCTTTTT+AGG + chr5_2:72181006-72181025 Msa0786600:intron 25.0%
!!! CATTTAATTGATGATGTATG+CGG - chr5_2:72181057-72181076 None:intergenic 25.0%
!!! AATTTGCTTATAATGGACAA+CGG + chr5_2:72181092-72181111 Msa0786600:intron 25.0%
! ATTGGTAAAAATGAAAGGAA+TGG - chr5_2:72181139-72181158 None:intergenic 25.0%
! TTACTATGACTAAAAGCAAA+AGG - chr5_2:72181186-72181205 None:intergenic 25.0%
! CCTTTAATATAAGCTAGATA+AGG - chr5_2:72181307-72181326 None:intergenic 25.0%
!! CCTTATCTAGCTTATATTAA+AGG + chr5_2:72181304-72181323 Msa0786600:intron 25.0%
! TTTCAGAATATGTTGATATG+AGG + chr5_2:72181577-72181596 Msa0786600:intron 25.0%
!!! ATAGTATCTTTGAAATCATG+TGG + chr5_2:72181835-72181854 Msa0786600:intron 25.0%
!! CACTTGAATTTTCAATGATA+TGG - chr5_2:72181884-72181903 None:intergenic 25.0%
!! CTCTTCATAGACATTAATTT+TGG - chr5_2:72182260-72182279 None:intergenic 25.0%
!! TTATACACAGTTTTCAATCT+CGG + chr5_2:72182403-72182422 Msa0786600:intron 25.0%
! CAAATCTAAGAAATAGGTTA+CGG - chr5_2:72182563-72182582 None:intergenic 25.0%
!!! TTCTTCAAGTTTTTACCTAA+GGG - chr5_2:72182732-72182751 None:intergenic 25.0%
!!! TTTCTTCAAGTTTTTACCTA+AGG - chr5_2:72182733-72182752 None:intergenic 25.0%
!!! AATTTTGAGACACAAGTTCA+AGG + chr5_2:72180006-72180025 Msa0786600:five_prime_UTR 30.0%
! GGCATTGAAAAAATTGGTTT+GGG - chr5_2:72180163-72180182 None:intergenic 30.0%
! TGGCATTGAAAAAATTGGTT+TGG - chr5_2:72180164-72180183 None:intergenic 30.0%
! TTTTGCTTAAAGAAGAAGCA+TGG - chr5_2:72180332-72180351 None:intergenic 30.0%
TTGTATGGAATTCATGCTTT+GGG - chr5_2:72180475-72180494 None:intergenic 30.0%
TTTGTATGGAATTCATGCTT+TGG - chr5_2:72180476-72180495 None:intergenic 30.0%
! CTGTGATTCAATAGTTTGTA+TGG - chr5_2:72180490-72180509 None:intergenic 30.0%
! TATGTCTGGTTTCATTGTTT+GGG + chr5_2:72180731-72180750 Msa0786600:intron 30.0%
TGTTTGGGAGTTAAAATTGA+TGG + chr5_2:72180746-72180765 Msa0786600:intron 30.0%
GAGAAAAACCAATTGTTCAA+TGG + chr5_2:72181774-72181793 Msa0786600:intron 30.0%
TTGCAAAACCATTGAACAAT+TGG - chr5_2:72181785-72181804 None:intergenic 30.0%
!! ATGGTTTTGCAAATCTCTAA+AGG + chr5_2:72181793-72181812 Msa0786600:intron 30.0%
! ACTAGAGAGAATGAATTTTC+TGG + chr5_2:72182185-72182204 Msa0786600:intron 30.0%
AACTTTACATTACCTTCACA+TGG + chr5_2:72182214-72182233 Msa0786600:intron 30.0%
ACACATTAACATAGAGATCA+GGG - chr5_2:72182336-72182355 None:intergenic 30.0%
! TTAATGTGTCACTACTGATA+TGG + chr5_2:72182347-72182366 Msa0786600:intron 30.0%
TCTCAAAGATTCATCTGAAA+GGG + chr5_2:72182514-72182533 Msa0786600:intron 30.0%
! CGTAACCTATTTCTTAGATT+TGG + chr5_2:72182561-72182580 Msa0786600:intron 30.0%
AGTTCTTAACAACATCACAA+AGG + chr5_2:72182763-72182782 Msa0786600:CDS 30.0%
! ATCTAAATGAAGTGTCTCAA+AGG + chr5_2:72182808-72182827 Msa0786600:CDS 30.0%
!!! TCAACTTTTTTCGCAACTAT+AGG + chr5_2:72182837-72182856 Msa0786600:CDS 30.0%
ATTCCTAGTATTATAAGAGG+TGG - chr5_2:72182879-72182898 None:intergenic 30.0%
GCTATTCCTAGTATTATAAG+AGG - chr5_2:72182882-72182901 None:intergenic 30.0%
CTAGGAATAGCTATATTAAC+TGG + chr5_2:72182891-72182910 Msa0786600:CDS 30.0%
AAAAAATAATAGACAGGCCT+TGG - chr5_2:72183005-72183024 None:intergenic 30.0%
ACTTTGTGTATGTGTGATCA+AGG - chr5_2:72180061-72180080 None:intergenic 35.0%
TGATCACACATACACAAAGT+CGG + chr5_2:72180061-72180080 Msa0786600:five_prime_UTR 35.0%
! GGGAATTGCATTTTCCATTT+TGG - chr5_2:72180143-72180162 None:intergenic 35.0%
! GTTATGTTTTCGTGTGAGAA+AGG - chr5_2:72180292-72180311 None:intergenic 35.0%
AAGCATGGTTGAATTTGATG+AGG - chr5_2:72180317-72180336 None:intergenic 35.0%
AAAACATGTGCTCAATCACA+AGG + chr5_2:72180348-72180367 Msa0786600:CDS 35.0%
AAACATGTGCTCAATCACAA+GGG + chr5_2:72180349-72180368 Msa0786600:CDS 35.0%
TCTGAGGATGATTCTTCAAT+TGG + chr5_2:72180387-72180406 Msa0786600:CDS 35.0%
CTATTCTATAACTTGACACC+TGG + chr5_2:72180575-72180594 Msa0786600:intron 35.0%
AAGATATATTTCTCCCCTTG+TGG - chr5_2:72180612-72180631 None:intergenic 35.0%
! GTATGTCTGGTTTCATTGTT+TGG + chr5_2:72180730-72180749 Msa0786600:intron 35.0%
! TGGGAGTTAAAATTGATGGT+AGG + chr5_2:72180750-72180769 Msa0786600:intron 35.0%
! GGGAGTTAAAATTGATGGTA+GGG + chr5_2:72180751-72180770 Msa0786600:intron 35.0%
!! TTATAATGGACAACGGAGTA+AGG + chr5_2:72181099-72181118 Msa0786600:intron 35.0%
AGTCGAAGAAAATAAAACGG+AGG + chr5_2:72181457-72181476 Msa0786600:intron 35.0%
!! GTTCTAGTTCATGTCACTAT+AGG + chr5_2:72181599-72181618 Msa0786600:intron 35.0%
TTAGGTTCAACTGTTTGTTC+TGG - chr5_2:72182099-72182118 None:intergenic 35.0%
AGTTGAACCTAACACACATT+TGG + chr5_2:72182107-72182126 Msa0786600:intron 35.0%
GTTGAACCTAACACACATTT+GGG + chr5_2:72182108-72182127 Msa0786600:intron 35.0%
GTATCATACCATGTTGAGTA+TGG - chr5_2:72182160-72182179 None:intergenic 35.0%
CACATAAAAGTTCCATGTGA+AGG - chr5_2:72182229-72182248 None:intergenic 35.0%
TAACATAGAGATCAGGGTAT+GGG - chr5_2:72182330-72182349 None:intergenic 35.0%
TTAACATAGAGATCAGGGTA+TGG - chr5_2:72182331-72182350 None:intergenic 35.0%
GACACATTAACATAGAGATC+AGG - chr5_2:72182337-72182356 None:intergenic 35.0%
TGTCACTACTGATATGGATT+TGG + chr5_2:72182353-72182372 Msa0786600:intron 35.0%
GACATACATGCATATCAGTA+GGG - chr5_2:72182496-72182515 None:intergenic 35.0%
AGACATACATGCATATCAGT+AGG - chr5_2:72182497-72182516 None:intergenic 35.0%
GTCTCAAAGATTCATCTGAA+AGG + chr5_2:72182513-72182532 Msa0786600:intron 35.0%
!! AACAACTATGAGAGCATTTC+TGG + chr5_2:72182610-72182629 Msa0786600:intron 35.0%
CTTCTAGGTTATGAAAGTGA+TGG + chr5_2:72182633-72182652 Msa0786600:intron 35.0%
! TCAAGTTTTTACCTAAGGGA+AGG - chr5_2:72182728-72182747 None:intergenic 35.0%
CTTCCACCTCTTATAATACT+AGG + chr5_2:72182873-72182892 Msa0786600:CDS 35.0%
AATTACCCCATTTACTACCA+AGG + chr5_2:72182985-72183004 Msa0786600:three_prime_UTR 35.0%
TTGAGACACAAGTTCAAGGT+TGG + chr5_2:72180010-72180029 Msa0786600:five_prime_UTR 40.0%
TCTCATGAAGCAAAGTTCCA+TGG + chr5_2:72180221-72180240 Msa0786600:exon 40.0%
AGAAGTGGTGGTTAGATTGA+TGG - chr5_2:72180250-72180269 None:intergenic 40.0%
! GTTTTCGTGTGAGAAAGGAA+GGG - chr5_2:72180287-72180306 None:intergenic 40.0%
! TGTTTTCGTGTGAGAAAGGA+AGG - chr5_2:72180288-72180307 None:intergenic 40.0%
AGAATCATCCTCAGAAACTC+CGG - chr5_2:72180382-72180401 None:intergenic 40.0%
AAAAGTGGGATAGGAACTGT+TGG - chr5_2:72180421-72180440 None:intergenic 40.0%
! TTGTGGGCTAATTGTATGTC+TGG + chr5_2:72180717-72180736 Msa0786600:intron 40.0%
!!! ACTAGTTTTCTCTTTGGTCC+TGG + chr5_2:72181216-72181235 Msa0786600:intron 40.0%
TCTACAAGCTCATTAGTCAC+TGG + chr5_2:72181711-72181730 Msa0786600:CDS 40.0%
! GTTCAACTGTTTGTTCTGGA+GGG - chr5_2:72182095-72182114 None:intergenic 40.0%
! TAACCGCATACTTTTCCCAT+TGG - chr5_2:72182386-72182405 None:intergenic 40.0%
! GCTCTTAATTTGATATCGCG+TGG + chr5_2:72182425-72182444 Msa0786600:intron 40.0%
AGTGGTGGTTAGATTGATGG+TGG - chr5_2:72180247-72180266 None:intergenic 45.0%
TGGATGAAGAGAAGAAGTGG+TGG - chr5_2:72180262-72180281 None:intergenic 45.0%
GCTTGGATGAAGAGAAGAAG+TGG - chr5_2:72180265-72180284 None:intergenic 45.0%
CAATCACAAGGGACTGAAAC+CGG + chr5_2:72180360-72180379 Msa0786600:CDS 45.0%
TGGCTCATTTCTCTCCACAA+GGG + chr5_2:72180595-72180614 Msa0786600:intron 45.0%
GAGTGACTAAAGAAACAGCC+AGG - chr5_2:72181237-72181256 None:intergenic 45.0%
ATCTTCTTCTCGTGCACAAC+TGG + chr5_2:72181668-72181687 Msa0786600:CDS 45.0%
! TCGTGCACAACTGGATCTTT+TGG + chr5_2:72181677-72181696 Msa0786600:CDS 45.0%
TGAAATCATGTGGTGCGAAG+TGG + chr5_2:72181845-72181864 Msa0786600:intron 45.0%
CAGTTTAGAGATCAGGGCAT+GGG - chr5_2:72182038-72182057 None:intergenic 45.0%
ACAGTTTAGAGATCAGGGCA+TGG - chr5_2:72182039-72182058 None:intergenic 45.0%
GCGGTACAGTTTAGAGATCA+GGG - chr5_2:72182044-72182063 None:intergenic 45.0%
GGTTCAACTGTTTGTTCTGG+AGG - chr5_2:72182096-72182115 None:intergenic 45.0%
TGGTTCGTAGGCACAAAAGA+GGG - chr5_2:72182140-72182159 None:intergenic 45.0%
ATGGTTCGTAGGCACAAAAG+AGG - chr5_2:72182141-72182160 None:intergenic 45.0%
CCATGTTGAGTATGGTTCGT+AGG - chr5_2:72182152-72182171 None:intergenic 45.0%
CCTACGAACCATACTCAACA+TGG + chr5_2:72182149-72182168 Msa0786600:intron 45.0%
GATCAGGGTATGGGAGAAAT+AGG - chr5_2:72182321-72182340 None:intergenic 45.0%
TGGATTTGGATTCCGTCCAA+TGG + chr5_2:72182367-72182386 Msa0786600:intron 45.0%
GGATTTGGATTCCGTCCAAT+GGG + chr5_2:72182368-72182387 Msa0786600:intron 45.0%
! CGCATACTTTTCCCATTGGA+CGG - chr5_2:72182382-72182401 None:intergenic 45.0%
! CGTCCAATGGGAAAAGTATG+CGG + chr5_2:72182380-72182399 Msa0786600:intron 45.0%
!! TGAGAGCATTTCTGGCTTCT+AGG + chr5_2:72182618-72182637 Msa0786600:intron 45.0%
GATGATTTCAGCCTTCCCTT+AGG + chr5_2:72182714-72182733 Msa0786600:CDS 45.0%
! ACAGGCCTTGGTAGTAAATG+GGG - chr5_2:72182993-72183012 None:intergenic 45.0%
! GACAGGCCTTGGTAGTAAAT+GGG - chr5_2:72182994-72183013 None:intergenic 45.0%
! AGACAGGCCTTGGTAGTAAA+TGG - chr5_2:72182995-72183014 None:intergenic 45.0%
!! GGTTAGATTGATGGTGGCCA+TGG - chr5_2:72180241-72180260 None:intergenic 50.0%
GACTGAAACCGGAGTTTCTG+AGG + chr5_2:72180371-72180390 Msa0786600:CDS 50.0%
CTTGTGGAGAGAAATGAGCC+AGG - chr5_2:72180596-72180615 None:intergenic 50.0%
CTGGCTCATTTCTCTCCACA+AGG + chr5_2:72180594-72180613 Msa0786600:intron 50.0%
GGCTCATTTCTCTCCACAAG+GGG + chr5_2:72180596-72180615 Msa0786600:intron 50.0%
GATCAGGGCATGGGAGAAAT+AGG - chr5_2:72182029-72182048 None:intergenic 50.0%
CGCGGTACAGTTTAGAGATC+AGG - chr5_2:72182045-72182064 None:intergenic 50.0%
GATCTCTAAACTGTACCGCG+CGG + chr5_2:72182045-72182064 Msa0786600:intron 50.0%
ATCTCTAAACTGTACCGCGC+GGG + chr5_2:72182046-72182065 Msa0786600:intron 50.0%
!! TTTGTTCTGGAGGGCAACTG+GGG - chr5_2:72182086-72182105 None:intergenic 50.0%
!! GTTTGTTCTGGAGGGCAACT+GGG - chr5_2:72182087-72182106 None:intergenic 50.0%
!! TGTTTGTTCTGGAGGGCAAC+TGG - chr5_2:72182088-72182107 None:intergenic 50.0%
GCAAGGCCCAAATGTGTGTT+AGG - chr5_2:72182117-72182136 None:intergenic 50.0%
GGTTCGTAGGCACAAAAGAG+GGG - chr5_2:72182139-72182158 None:intergenic 50.0%
TTGCGCAGTTGGTTGGAGAA+AGG + chr5_2:72182688-72182707 Msa0786600:CDS 50.0%
TGCGCAGTTGGTTGGAGAAA+GGG + chr5_2:72182689-72182708 Msa0786600:CDS 50.0%
CGTGTGAGAAAGGAAGGGCT+TGG - chr5_2:72180282-72180301 None:intergenic 55.0%
GTAGGCACAAAAGAGGGGCA+AGG - chr5_2:72182134-72182153 None:intergenic 55.0%
GAACAGCTTGCGCAGTTGGT+TGG + chr5_2:72182681-72182700 Msa0786600:CDS 55.0%
TCGCGAACAGCTTGCGCAGT+TGG + chr5_2:72182677-72182696 Msa0786600:CDS 60.0%
TGCAGGTCTGATAGCCCGCG+CGG - chr5_2:72182063-72182082 None:intergenic 65.0%
CTGGAGGGCAACTGGGGTGC+AGG - chr5_2:72182080-72182099 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 72180004 72183035 72180004 ID=Msa0786600;Name=Msa0786600
chr5_2 mRNA 72180004 72183035 72180004 ID=Msa0786600-mRNA-1;Parent=Msa0786600;Name=Msa0786600-mRNA-1;_AED=0.25;_eAED=0.25;_QI=221|1|1|1|1|1|3|100|183
chr5_2 exon 72180004 72180408 72180004 ID=Msa0786600-mRNA-1:exon:21853;Parent=Msa0786600-mRNA-1
chr5_2 exon 72181661 72181732 72181661 ID=Msa0786600-mRNA-1:exon:21854;Parent=Msa0786600-mRNA-1
chr5_2 exon 72182640 72183035 72182640 ID=Msa0786600-mRNA-1:exon:21855;Parent=Msa0786600-mRNA-1
chr5_2 five_prime_UTR 72180004 72180224 72180004 ID=Msa0786600-mRNA-1:five_prime_utr;Parent=Msa0786600-mRNA-1
chr5_2 CDS 72180225 72180408 72180225 ID=Msa0786600-mRNA-1:cds;Parent=Msa0786600-mRNA-1
chr5_2 CDS 72181661 72181732 72181661 ID=Msa0786600-mRNA-1:cds;Parent=Msa0786600-mRNA-1
chr5_2 CDS 72182640 72182935 72182640 ID=Msa0786600-mRNA-1:cds;Parent=Msa0786600-mRNA-1
chr5_2 three_prime_UTR 72182936 72183035 72182936 ID=Msa0786600-mRNA-1:three_prime_utr;Parent=Msa0786600-mRNA-1
Gene Sequence

>Msa0786600

ATGAAGCAAAGTTCCATGGCCACCATCAATCTAACCACCACTTCTTCTCTTCATCCAAGCCCTTCCTTTCTCACACGAAAACATAACAACCTCATCAAATTCAACCATGCTTCTTCTTTAAGCAAAACATGTGCTCAATCACAAGGGACTGAAACCGGAGTTTCTGAGGATGATTCTTCAATTGGATCTTTATCTTCTTCTCGTGCACAACTGGATCTTTTGGAGCAATTTACATCTACAAGCTCATTAGTCACTGGTTATGAAAGTGATGGCAGCTCTCAGAGACTTACAATTCGCGAACAGCTTGCGCAGTTGGTTGGAGAAAGGGATGATGATTTCAGCCTTCCCTTAGGTAAAAACTTGAAGAAAGTGAGTGCAAAGTTCTTAACAACATCACAAAGGAGAAATATCAAGAGACAGAGTTATCTAAATGAAGTGTCTCAAAGGAATGATTCAACTTTTTTCGCAACTATAGGAGCATTTGTACTTCTTCCACCTCTTATAATACTAGGAATAGCTATATTAACTGGTTATGTACAGCTTTTACCTTGA

Protein sequence

>Msa0786600

MKQSSMATINLTTTSSLHPSPSFLTRKHNNLIKFNHASSLSKTCAQSQGTETGVSEDDSSIGSLSSSRAQLDLLEQFTSTSSLVTGYESDGSSQRLTIREQLAQLVGERDDDFSLPLGKNLKKVSAKFLTTSQRRNIKRQSYLNEVSQRNDSTFFATIGAFVLLPPLIILGIAILTGYVQLLP*