Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612410 | XP_024638782.1 | 93.380 | 287 | 12 | 3 | 1 | 281 | 1 | 286 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0612410 | 0.826357 | 2.836647e-54 | -8.615850e-47 |
| Msa0018920 | Msa0612410 | 0.821344 | 4.245006e-53 | -8.615850e-47 |
| Msa0027800 | Msa0612410 | 0.824236 | 9.003069e-54 | -8.615850e-47 |
| Msa0030070 | Msa0612410 | 0.856249 | 3.656067e-62 | -8.615850e-47 |
| Msa0032980 | Msa0612410 | 0.819339 | 1.223216e-52 | -8.615850e-47 |
| Msa0040640 | Msa0612410 | 0.819325 | 1.232158e-52 | -8.615850e-47 |
| Msa0050530 | Msa0612410 | 0.824672 | 7.109320e-54 | -8.615850e-47 |
| Msa0078130 | Msa0612410 | 0.800713 | 1.266788e-48 | -8.615850e-47 |
| Msa0090440 | Msa0612410 | 0.807015 | 6.211473e-50 | -8.615850e-47 |
| Msa0091350 | Msa0612410 | 0.844390 | 7.788035e-59 | -8.615850e-47 |
| Msa0094180 | Msa0612410 | 0.805504 | 1.293161e-49 | -8.615850e-47 |
| Msa0100600 | Msa0612410 | 0.846517 | 2.066875e-59 | -8.615850e-47 |
| Msa0100890 | Msa0612410 | 0.832880 | 7.345220e-56 | -8.615850e-47 |
| Msa0106630 | Msa0612410 | 0.820642 | 6.158655e-53 | -8.615850e-47 |
| Msa0109730 | Msa0612410 | 0.816583 | 5.130547e-52 | -8.615850e-47 |
| Msa0113410 | Msa0612410 | 0.821719 | 3.477321e-53 | -8.615850e-47 |
| Msa0607330 | Msa0612410 | 0.804470 | 2.127272e-49 | -8.615850e-47 |
| Msa0608350 | Msa0612410 | 0.832213 | 1.074968e-55 | -8.615850e-47 |
| Msa0612410 | Msa0620500 | 0.842898 | 1.951415e-58 | -8.615850e-47 |
| Msa0612410 | Msa0625620 | 0.816495 | 5.369919e-52 | -8.615850e-47 |
| Msa0612410 | Msa0640800 | 0.893534 | 5.748716e-75 | -8.615850e-47 |
| Msa0612410 | Msa0645340 | 0.818432 | 1.966346e-52 | -8.615850e-47 |
| Msa0612410 | Msa0647440 | 0.851300 | 9.710947e-61 | -8.615850e-47 |
| Msa0612410 | Msa0648760 | 0.849856 | 2.472134e-60 | -8.615850e-47 |
| Msa0612410 | Msa0654740 | 0.820753 | 5.805127e-53 | -8.615850e-47 |
| Msa0612410 | Msa0657210 | 0.817147 | 3.833822e-52 | -8.615850e-47 |
| Msa0612410 | Msa0659200 | 0.808710 | 2.710007e-50 | -8.615850e-47 |
| Msa0612410 | Msa0663290 | 0.849731 | 2.678119e-60 | -8.615850e-47 |
| Msa0612410 | Msa0664070 | 0.844739 | 6.273748e-59 | -8.615850e-47 |
| Msa0612410 | Msa0688620 | 0.856242 | 3.671709e-62 | -8.615850e-47 |
| Msa0612410 | Msa0690320 | 0.835136 | 2.000133e-56 | -8.615850e-47 |
| Msa0612410 | Msa0691270 | 0.829010 | 6.539252e-55 | -8.615850e-47 |
| Msa0612410 | Msa0701250 | 0.831959 | 1.241533e-55 | -8.615850e-47 |
| Msa0612410 | Msa0705180 | 0.813098 | 3.039124e-51 | -8.615850e-47 |
| Msa0612410 | Msa0707260 | 0.823406 | 1.409288e-53 | -8.615850e-47 |
| Msa0612410 | Msa0717900 | 0.833798 | 4.336101e-56 | -8.615850e-47 |
| Msa0612410 | Msa0720280 | 0.866357 | 3.025460e-65 | -8.615850e-47 |
| Msa0612410 | Msa0737130 | 0.853390 | 2.466416e-61 | -8.615850e-47 |
| Msa0612410 | Msa0749190 | 0.851707 | 7.447066e-61 | -8.615850e-47 |
| Msa0612410 | Msa0750520 | 0.854594 | 1.109344e-61 | -8.615850e-47 |
| Msa0612410 | Msa0751720 | 0.824641 | 7.229082e-54 | -8.615850e-47 |
| Msa0612410 | Msa0800660 | 0.803853 | 2.858915e-49 | -8.615850e-47 |
| Msa0612410 | Msa0803140 | 0.869410 | 3.161330e-66 | -8.615850e-47 |
| Msa0612410 | Msa0816080 | 0.820908 | 5.348069e-53 | -8.615850e-47 |
| Msa0612410 | Msa0816230 | 0.815663 | 8.237303e-52 | -8.615850e-47 |
| Msa0612410 | Msa0831820 | 0.807607 | 4.654946e-50 | -8.615850e-47 |
| Msa0612410 | Msa0837680 | 0.806905 | 6.554662e-50 | -8.615850e-47 |
| Msa0612410 | Msa0841500 | 0.871660 | 5.770252e-67 | -8.615850e-47 |
| Msa0612410 | Msa0846900 | 0.801499 | 8.748203e-49 | -8.615850e-47 |
| Msa0612410 | Msa0856610 | 0.802692 | 4.973654e-49 | -8.615850e-47 |
| Msa0612410 | Msa0861440 | 0.833379 | 5.517361e-56 | -8.615850e-47 |
| Msa0612410 | Msa0897790 | 0.810663 | 1.030345e-50 | -8.615850e-47 |
| Msa0612410 | Msa0900090 | 0.818805 | 1.617777e-52 | -8.615850e-47 |
| Msa0612410 | Msa0909760 | 0.816831 | 4.514312e-52 | -8.615850e-47 |
| Msa0612410 | Msa0926310 | 0.821369 | 4.188166e-53 | -8.615850e-47 |
| Msa0612410 | Msa0929900 | 0.822407 | 2.408301e-53 | -8.615850e-47 |
| Msa0612410 | Msa0965470 | 0.813066 | 3.088576e-51 | -8.615850e-47 |
| Msa0612410 | Msa0978980 | 0.800277 | 1.553907e-48 | -8.615850e-47 |
| Msa0612410 | Msa0999950 | 0.800302 | 1.536399e-48 | -8.615850e-47 |
| Msa0612410 | Msa1000780 | 0.834159 | 3.521571e-56 | -8.615850e-47 |
| Msa0612410 | Msa1008260 | 0.800580 | 1.348174e-48 | -8.615850e-47 |
| Msa0612410 | Msa1008670 | 0.829814 | 4.170122e-55 | -8.615850e-47 |
| Msa0612410 | Msa1008680 | 0.804779 | 1.833821e-49 | -8.615850e-47 |
| Msa0612410 | Msa1008850 | 0.811431 | 7.025293e-51 | -8.615850e-47 |
| Msa0612410 | Msa1041370 | 0.802873 | 4.561973e-49 | -8.615850e-47 |
| Msa0612410 | Msa1071410 | 0.857276 | 1.822890e-62 | -8.615850e-47 |
| Msa0612410 | Msa1076020 | 0.812743 | 3.636334e-51 | -8.615850e-47 |
| Msa0612410 | Msa1078860 | 0.847791 | 9.245317e-60 | -8.615850e-47 |
| Msa0612410 | Msa1078990 | 0.828816 | 7.283133e-55 | -8.615850e-47 |
| Msa0612410 | Msa1082380 | 0.804194 | 2.428645e-49 | -8.615850e-47 |
| Msa0612410 | Msa1083630 | 0.804438 | 2.160366e-49 | -8.615850e-47 |
| Msa0612410 | Msa1106220 | 0.828787 | 7.402890e-55 | -8.615850e-47 |
| Msa0612410 | Msa1119380 | 0.807837 | 4.158241e-50 | -8.615850e-47 |
| Msa0612410 | Msa1128620 | 0.809092 | 2.244355e-50 | -8.615850e-47 |
| Msa0612410 | Msa1138800 | 0.803539 | 3.321582e-49 | -8.615850e-47 |
| Msa0612410 | Msa1144990 | 0.834676 | 2.611244e-56 | -8.615850e-47 |
| Msa0612410 | Msa1147560 | 0.803707 | 3.066157e-49 | -8.615850e-47 |
| Msa0612410 | Msa1159590 | 0.806644 | 7.441325e-50 | -8.615850e-47 |
| Msa0612410 | Msa1163180 | 0.808080 | 3.691044e-50 | -8.615850e-47 |
| Msa0612410 | Msa1166820 | 0.802796 | 4.733618e-49 | -8.615850e-47 |
| Msa0612410 | Msa1169170 | 0.838354 | 3.023009e-57 | -8.615850e-47 |
| Msa0612410 | Msa1169690 | 0.837176 | 6.064953e-57 | -8.615850e-47 |
| Msa0612410 | Msa1191000 | 0.824178 | 9.291943e-54 | -8.615850e-47 |
| Msa0612410 | Msa1206040 | 0.832655 | 8.353515e-56 | -8.615850e-47 |
| Msa0612410 | Msa1215980 | 0.843657 | 1.224534e-58 | -8.615850e-47 |
| Msa0612410 | Msa1231780 | 0.823237 | 1.542952e-53 | -8.615850e-47 |
| Msa0612410 | Msa1254420 | 0.823749 | 1.171363e-53 | -8.615850e-47 |
| Msa0612410 | Msa1254540 | 0.804191 | 2.431480e-49 | -8.615850e-47 |
| Msa0612410 | Msa1263740 | 0.813520 | 2.455241e-51 | -8.615850e-47 |
| Msa0612410 | Msa1267930 | 0.830734 | 2.485023e-55 | -8.615850e-47 |
| Msa0612410 | Msa1294460 | 0.813541 | 2.429462e-51 | -8.615850e-47 |
| Msa0612410 | Msa1294790 | 0.839464 | 1.560451e-57 | -8.615850e-47 |
| Msa0612410 | Msa1297070 | 0.842381 | 2.677675e-58 | -8.615850e-47 |
| Msa0612410 | Msa1301820 | 0.830366 | 3.057673e-55 | -8.615850e-47 |
| Msa0612410 | Msa1305780 | 0.802661 | 5.045904e-49 | -8.615850e-47 |
| Msa0612410 | Msa1328870 | 0.827641 | 1.398269e-54 | -8.615850e-47 |
| Msa0612410 | Msa1332950 | 0.811204 | 7.868812e-51 | -8.615850e-47 |
| Msa0612410 | Msa1339230 | 0.848878 | 4.627398e-60 | -8.615850e-47 |
| Msa0612410 | Msa1342810 | 0.808771 | 2.629834e-50 | -8.615850e-47 |
| Msa0612410 | Msa1361930 | 0.806161 | 9.407271e-50 | -8.615850e-47 |
| Msa0612410 | Msa1372030 | 0.813002 | 3.190408e-51 | -8.615850e-47 |
| Msa0612410 | Msa1381470 | 0.807092 | 5.984982e-50 | -8.615850e-47 |
| Msa0612410 | Msa1381800 | 0.857431 | 1.640355e-62 | -8.615850e-47 |
| Msa0612410 | Msa1387500 | 0.831486 | 1.624238e-55 | -8.615850e-47 |
| Msa0612410 | Msa1389820 | 0.808162 | 3.546200e-50 | -8.615850e-47 |
| Msa0612410 | Msa1390210 | 0.807629 | 4.605008e-50 | -8.615850e-47 |
| Msa0612410 | Msa1393560 | 0.835885 | 1.293036e-56 | -8.615850e-47 |
| Msa0612410 | Msa1399190 | 0.811812 | 5.806783e-51 | -8.615850e-47 |
| Msa0612410 | Msa1406720 | 0.810420 | 1.163234e-50 | -8.615850e-47 |
| Msa0612410 | Msa1410190 | 0.822047 | 2.919122e-53 | -8.615850e-47 |
| Msa0612410 | Msa1424370 | 0.848321 | 6.602282e-60 | -8.615850e-47 |
| Msa0612410 | Msa1426320 | 0.817628 | 2.987372e-52 | -8.615850e-47 |
| Msa0612410 | Msa1432060 | 0.813898 | 2.027142e-51 | -8.615850e-47 |
| Msa0612410 | Msa1432520 | 0.800625 | 1.319877e-48 | -8.615850e-47 |
| Msa0612410 | Msa1434640 | 0.825588 | 4.320243e-54 | -8.615850e-47 |
| Msa0612410 | Msa1439730 | 0.807401 | 5.147853e-50 | -8.615850e-47 |
| Msa0612410 | Msa1442260 | 0.815725 | 7.979808e-52 | -8.615850e-47 |
| Msa0612410 | Msa1457840 | 0.827389 | 1.606971e-54 | -8.615850e-47 |
| Msa0123320 | Msa0612410 | 0.801713 | 7.909338e-49 | -8.615850e-47 |
| Msa0125590 | Msa0612410 | 0.867650 | 1.170306e-65 | -8.615850e-47 |
| Msa0127340 | Msa0612410 | 0.852759 | 3.739776e-61 | -8.615850e-47 |
| Msa0127680 | Msa0612410 | 0.803761 | 2.987444e-49 | -8.615850e-47 |
| Msa0153210 | Msa0612410 | 0.819901 | 9.105073e-53 | -8.615850e-47 |
| Msa0156090 | Msa0612410 | 0.800789 | 1.222069e-48 | -8.615850e-47 |
| Msa0158900 | Msa0612410 | 0.827031 | 1.958452e-54 | -8.615850e-47 |
| Msa0165830 | Msa0612410 | 0.834289 | 3.267630e-56 | -8.615850e-47 |
| Msa0170070 | Msa0612410 | 0.860895 | 1.500883e-63 | -8.615850e-47 |
| Msa0184700 | Msa0612410 | 0.819931 | 8.959680e-53 | -8.615850e-47 |
| Msa0186180 | Msa0612410 | 0.834969 | 2.203981e-56 | -8.615850e-47 |
| Msa0186360 | Msa0612410 | 0.807000 | 6.259165e-50 | -8.615850e-47 |
| Msa0204970 | Msa0612410 | 0.857857 | 1.226769e-62 | -8.615850e-47 |
| Msa0225800 | Msa0612410 | 0.842672 | 2.241893e-58 | -8.615850e-47 |
| Msa0364680 | Msa0612410 | 0.806013 | 1.011021e-49 | -8.615850e-47 |
| Msa0373170 | Msa0612410 | 0.866933 | 1.984419e-65 | -8.615850e-47 |
| Msa0382230 | Msa0612410 | 0.815748 | 7.887093e-52 | -8.615850e-47 |
| Msa0383940 | Msa0612410 | 0.816469 | 5.443221e-52 | -8.615850e-47 |
| Msa0412130 | Msa0612410 | 0.829595 | 4.714366e-55 | -8.615850e-47 |
| Msa0415820 | Msa0612410 | 0.821641 | 3.623475e-53 | -8.615850e-47 |
| Msa0416210 | Msa0612410 | 0.824244 | 8.966571e-54 | -8.615850e-47 |
| Msa0420430 | Msa0612410 | 0.821604 | 3.697008e-53 | -8.615850e-47 |
| Msa0420670 | Msa0612410 | 0.822397 | 2.421235e-53 | -8.615850e-47 |
| Msa0421750 | Msa0612410 | 0.842094 | 3.188766e-58 | -8.615850e-47 |
| Msa0433630 | Msa0612410 | 0.816751 | 4.705446e-52 | -8.615850e-47 |
| Msa0433760 | Msa0612410 | 0.824422 | 8.142235e-54 | -8.615850e-47 |
| Msa0434360 | Msa0612410 | 0.820006 | 8.616158e-53 | -8.615850e-47 |
| Msa0461550 | Msa0612410 | 0.833316 | 5.720232e-56 | -8.615850e-47 |
| Msa0466520 | Msa0612410 | 0.820892 | 5.393700e-53 | -8.615850e-47 |
| Msa0467690 | Msa0612410 | 0.861787 | 8.028590e-64 | -8.615850e-47 |
| Msa0477630 | Msa0612410 | 0.819860 | 9.303588e-53 | -8.615850e-47 |
| Msa0478140 | Msa0612410 | 0.829539 | 4.864716e-55 | -8.615850e-47 |
| Msa0478200 | Msa0612410 | 0.830713 | 2.514551e-55 | -8.615850e-47 |
| Msa0249870 | Msa0612410 | 0.851935 | 6.415137e-61 | -8.615850e-47 |
| Msa0260630 | Msa0612410 | 0.840343 | 9.205902e-58 | -8.615850e-47 |
| Msa0281540 | Msa0612410 | 0.844213 | 8.686967e-59 | -8.615850e-47 |
| Msa0288400 | Msa0612410 | 0.804928 | 1.707124e-49 | -8.615850e-47 |
| Msa0320250 | Msa0612410 | 0.818451 | 1.947123e-52 | -8.615850e-47 |
| Msa0320270 | Msa0612410 | 0.818194 | 2.226392e-52 | -8.615850e-47 |
| Msa0320290 | Msa0612410 | 0.828162 | 1.047842e-54 | -8.615850e-47 |
| Msa0320580 | Msa0612410 | 0.862157 | 6.181841e-64 | -8.615850e-47 |
| Msa0341680 | Msa0612410 | 0.812481 | 4.147762e-51 | -8.615850e-47 |
| Msa0342220 | Msa0612410 | 0.806030 | 1.002793e-49 | -8.615850e-47 |
| Msa0344110 | Msa0612410 | 0.864057 | 1.599062e-64 | -8.615850e-47 |
| Msa0506540 | Msa0612410 | 0.810667 | 1.028643e-50 | -8.615850e-47 |
| Msa0506880 | Msa0612410 | 0.827299 | 1.689573e-54 | -8.615850e-47 |
| Msa0507810 | Msa0612410 | 0.849418 | 3.276345e-60 | -8.615850e-47 |
| Msa0507820 | Msa0612410 | 0.846321 | 2.337756e-59 | -8.615850e-47 |
| Msa0507920 | Msa0612410 | 0.847211 | 1.334759e-59 | -8.615850e-47 |
| Msa0512530 | Msa0612410 | 0.823326 | 1.471083e-53 | -8.615850e-47 |
| Msa0513560 | Msa0612410 | 0.806335 | 8.647789e-50 | -8.615850e-47 |
| Msa0514020 | Msa0612410 | 0.845054 | 5.156846e-59 | -8.615850e-47 |
| Msa0520680 | Msa0612410 | 0.812609 | 3.889849e-51 | -8.615850e-47 |
| Msa0521680 | Msa0612410 | 0.812864 | 3.421349e-51 | -8.615850e-47 |
| Msa0523380 | Msa0612410 | 0.823264 | 1.521388e-53 | -8.615850e-47 |
| Msa0527850 | Msa0612410 | 0.858767 | 6.572969e-63 | -8.615850e-47 |
| Msa0541740 | Msa0612410 | 0.836223 | 1.061529e-56 | -8.615850e-47 |
| Msa0544410 | Msa0612410 | 0.867800 | 1.047442e-65 | -8.615850e-47 |
| Msa0544430 | Msa0612410 | 0.814761 | 1.306892e-51 | -8.615850e-47 |
| Msa0554300 | Msa0612410 | 0.844563 | 6.996600e-59 | -8.615850e-47 |
| Msa0561560 | Msa0612410 | 0.824372 | 8.366786e-54 | -8.615850e-47 |
| Msa0564980 | Msa0612410 | 0.825544 | 4.425046e-54 | -8.615850e-47 |
| Msa0572830 | Msa0612410 | 0.847429 | 1.163001e-59 | -8.615850e-47 |
| Msa0575710 | Msa0612410 | 0.833330 | 5.675740e-56 | -8.615850e-47 |
| Msa0582460 | Msa0612410 | 0.864511 | 1.153482e-64 | -8.615850e-47 |
| Msa0586200 | Msa0612410 | 0.858301 | 9.052593e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612410 | MtrunA17_Chr4g0038301 | 93.380 | 287 | 12 | 3 | 1 | 281 | 1 | 286 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0612410 | AT3G02820.1 | 48.736 | 277 | 126 | 7 | 8 | 274 | 6 | 276 | 3.84e-79 | 241 |
| Msa0612410 | AT3G02820.2 | 48.736 | 277 | 126 | 7 | 8 | 274 | 23 | 293 | 5.88e-79 | 241 |
Find 90 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGACTGGTTCCATTATT+TGG | 0.093724 | 4_2:+60872986 | None:intergenic |
| TAGGGTTTGGATTGGGATTT+GGG | 0.153645 | 4_2:+60875652 | None:intergenic |
| TGAATGTCGTTAACAGTTTC+AGG | 0.178272 | 4_2:+60873562 | None:intergenic |
| GGCATGTTTCGAAAGAAAAT+TGG | 0.235395 | 4_2:-60872711 | Msa0612410:three_prime_UTR |
| CTCTTTCTCTTAATTCTCTA+AGG | 0.235487 | 4_2:+60874261 | None:intergenic |
| TTAGGGTTTGGATTGGGATT+TGG | 0.242699 | 4_2:+60875651 | None:intergenic |
| GCGGTGGAGGTGGTGGTGTT+AGG | 0.260012 | 4_2:+60875633 | None:intergenic |
| TCTCGAATGTGTATTGAAAA+TGG | 0.265771 | 4_2:+60875785 | None:intergenic |
| GAGGTGGTGGTGTTAGGGTT+TGG | 0.285661 | 4_2:+60875639 | None:intergenic |
| GTAACAACCTGTTGCTGTTC+CGG | 0.287274 | 4_2:+60875722 | None:intergenic |
| AGAAGCTCGGGAGTGAGTTT+TGG | 0.293857 | 4_2:+60875531 | None:intergenic |
| GTGATTTAATAGTTGACTTC+TGG | 0.304333 | 4_2:-60872785 | Msa0612410:three_prime_UTR |
| TTAAATGAAGTCCCAAATAA+TGG | 0.341792 | 4_2:-60872998 | Msa0612410:CDS |
| GTGGTGTTAGGGTTTGGATT+GGG | 0.352807 | 4_2:+60875645 | None:intergenic |
| ACAGACTGGTTCCATTATTT+GGG | 0.352932 | 4_2:+60872987 | None:intergenic |
| TGCTGTTATCTCAGCGCTGC+TGG | 0.389085 | 4_2:+60872964 | None:intergenic |
| CGGTGGAGGTGGTGGTGTTA+GGG | 0.390043 | 4_2:+60875634 | None:intergenic |
| TTGCTGTATCTGCAGAAAAT+GGG | 0.395630 | 4_2:-60873621 | Msa0612410:intron |
| AGATTACCTTGTTCACCATC+TGG | 0.397013 | 4_2:+60874179 | None:intergenic |
| TACATTGCAATCTTGAAGAT+TGG | 0.397369 | 4_2:-60872732 | Msa0612410:three_prime_UTR |
| ATAGTTGACTTCTGGTGGTC+TGG | 0.407653 | 4_2:-60872777 | Msa0612410:three_prime_UTR |
| TGCTGCTACTAGGCGTGTTA+AGG | 0.413675 | 4_2:-60875240 | Msa0612410:intron |
| GGGATGCTGTTGTCCACAAC+TGG | 0.415111 | 4_2:+60874200 | None:intergenic |
| TGGAACTGCGGTGGAGGTGG+TGG | 0.416402 | 4_2:+60875626 | None:intergenic |
| TCAGGATCCGGAACAGCAAC+AGG | 0.431444 | 4_2:-60875729 | Msa0612410:CDS |
| AGGTGGAACTGCGGTGGAGG+TGG | 0.433681 | 4_2:+60875623 | None:intergenic |
| CTTCTCTCTGATGATGGCCT+CGG | 0.433987 | 4_2:-60875510 | Msa0612410:CDS |
| AAGACTGTGGTATGCTGGCT+CGG | 0.435771 | 4_2:+60872885 | None:intergenic |
| GGTGGTGTTAGGGTTTGGAT+TGG | 0.441623 | 4_2:+60875644 | None:intergenic |
| TCAACCTATTTGCTTCCATA+CGG | 0.452181 | 4_2:+60872930 | None:intergenic |
| GAGCCCGTATGGAAGCAAAT+AGG | 0.454008 | 4_2:-60872934 | Msa0612410:CDS |
| GGTAGGTGGAACTGCGGTGG+AGG | 0.459891 | 4_2:+60875620 | None:intergenic |
| CTCAGCGCTGCTGGACAGAC+TGG | 0.461803 | 4_2:+60872973 | None:intergenic |
| GAGCTTCTTCTCTCTGATGA+TGG | 0.470368 | 4_2:-60875516 | Msa0612410:CDS |
| CTAGGAAGACTGTGGTATGC+TGG | 0.471259 | 4_2:+60872880 | None:intergenic |
| GAAGAGAAAATGTCAGGATC+CGG | 0.473828 | 4_2:-60875741 | Msa0612410:exon |
| ACCTCCACCTTCAAACCCTC+TGG | 0.474558 | 4_2:-60875600 | Msa0612410:CDS |
| CTCGAATGTGTATTGAAAAT+GGG | 0.478274 | 4_2:+60875786 | None:intergenic |
| AGAAGAGAAGAGAAAATGTC+AGG | 0.483482 | 4_2:-60875747 | Msa0612410:exon |
| CAACCTATTTGCTTCCATAC+GGG | 0.491149 | 4_2:+60872931 | None:intergenic |
| AGCAGAGCAGAGAGCCCGTA+TGG | 0.494494 | 4_2:-60872945 | Msa0612410:CDS |
| TCTGGGTCCAGAGGGTTTGA+AGG | 0.495023 | 4_2:+60875593 | None:intergenic |
| TTGGGATTTGGGGCGGTGAA+AGG | 0.495060 | 4_2:+60875663 | None:intergenic |
| TTAAGAGAAAGAGTTGCAAA+TGG | 0.496853 | 4_2:-60874251 | Msa0612410:CDS |
| GTTTGGATTGGGATTTGGGG+CGG | 0.497587 | 4_2:+60875656 | None:intergenic |
| TTGAGAAAGTTGCTGCTACT+AGG | 0.498945 | 4_2:-60875250 | Msa0612410:CDS |
| TCATCAGAGAGAAGAAGCTC+GGG | 0.503800 | 4_2:+60875519 | None:intergenic |
| GATTACCTTGTTCACCATCT+GGG | 0.514063 | 4_2:+60874180 | None:intergenic |
| ATCATCAGAGAGAAGAAGCT+CGG | 0.515709 | 4_2:+60875518 | None:intergenic |
| TGTTACAAATGCGGCAGACC+AGG | 0.517761 | 4_2:-60875705 | Msa0612410:CDS |
| AGGGTTTGGATTGGGATTTG+GGG | 0.518659 | 4_2:+60875653 | None:intergenic |
| ATTTAATAGTTGACTTCTGG+TGG | 0.518733 | 4_2:-60872782 | Msa0612410:three_prime_UTR |
| GGAGGTAGGTGGAACTGCGG+TGG | 0.526626 | 4_2:+60875617 | None:intergenic |
| GAGAAAGAGTTGCAAATGGT+GGG | 0.533112 | 4_2:-60874247 | Msa0612410:CDS |
| AGAGAAAGAGTTGCAAATGG+TGG | 0.541281 | 4_2:-60874248 | Msa0612410:CDS |
| TATGGAAGCAAATAGGTTGA+AGG | 0.541904 | 4_2:-60872927 | Msa0612410:CDS |
| TGCTTGACTTATACTCTGAC+TGG | 0.544504 | 4_2:-60875322 | Msa0612410:CDS |
| ATAGGTTGAAGGCACTAGAA+AGG | 0.545276 | 4_2:-60872916 | Msa0612410:CDS |
| TTACAATAAATATCAAAGCT+AGG | 0.548001 | 4_2:+60872862 | None:intergenic |
| GGTTTGAAGGTGGAGGTAGG+TGG | 0.554318 | 4_2:+60875606 | None:intergenic |
| GAAGTCAACTATTAAATCAC+GGG | 0.559043 | 4_2:+60872788 | None:intergenic |
| AACTTCAAATACCACGGTCG+CGG | 0.560735 | 4_2:-60875462 | Msa0612410:CDS |
| CCGTGGTATTTGAAGTTGCG+AGG | 0.565970 | 4_2:+60875468 | None:intergenic |
| TGCTGTATCTGCAGAAAATG+GGG | 0.567337 | 4_2:-60873620 | Msa0612410:intron |
| CAGTCGCGTGACCAGTGACC+TGG | 0.568375 | 4_2:+60875687 | None:intergenic |
| GGTGGTTCACGCAACTTCGA+TGG | 0.570994 | 4_2:+60874221 | None:intergenic |
| AGACTGTGGTATGCTGGCTC+GGG | 0.572569 | 4_2:+60872886 | None:intergenic |
| TGTTTCGAAAGAAAATTGGT+TGG | 0.573469 | 4_2:-60872707 | Msa0612410:three_prime_UTR |
| GGGTCCAGAGGGTTTGAAGG+TGG | 0.574431 | 4_2:+60875596 | None:intergenic |
| TCCAGAGGGTTTGAAGGTGG+AGG | 0.577332 | 4_2:+60875599 | None:intergenic |
| AATTGATTGAAAGAGTAATA+CGG | 0.577716 | 4_2:+60875284 | None:intergenic |
| AATGCGGCAGACCAGGTCAC+TGG | 0.581408 | 4_2:-60875698 | Msa0612410:CDS |
| CAACCTCATGGCCGCGACCG+TGG | 0.581868 | 4_2:+60875451 | None:intergenic |
| AGCATCCCAGATGGTGAACA+AGG | 0.583542 | 4_2:-60874185 | Msa0612410:intron |
| AGAAGTCAACTATTAAATCA+CGG | 0.584982 | 4_2:+60872787 | None:intergenic |
| GACGGCGGATCTGGGTCCAG+AGG | 0.589738 | 4_2:+60875584 | None:intergenic |
| CGTGGTATTTGAAGTTGCGA+GGG | 0.591626 | 4_2:+60875469 | None:intergenic |
| GAGGGTTTGAAGGTGGAGGT+AGG | 0.595710 | 4_2:+60875603 | None:intergenic |
| ACGGCGGATCTGGGTCCAGA+GGG | 0.600152 | 4_2:+60875585 | None:intergenic |
| GTTGCGTGAACCACCAGTTG+TGG | 0.628493 | 4_2:-60874213 | Msa0612410:CDS |
| AGAAAGAGTTGCAAATGGTG+GGG | 0.639503 | 4_2:-60874246 | Msa0612410:CDS |
| ATGCTGTTGTCCACAACTGG+TGG | 0.640038 | 4_2:+60874203 | None:intergenic |
| ATACCACGGTCGCGGCCATG+AGG | 0.648998 | 4_2:-60875454 | Msa0612410:intron |
| GTGGACAACAGCATCCCAGA+TGG | 0.665734 | 4_2:-60874194 | Msa0612410:CDS |
| ACATTCGAGACAGAGAGAGA+AGG | 0.679568 | 4_2:-60875772 | Msa0612410:five_prime_UTR |
| CCTCGCAACTTCAAATACCA+CGG | 0.686072 | 4_2:-60875468 | Msa0612410:CDS |
| GGTGGAGGTAGGTGGAACTG+CGG | 0.691142 | 4_2:+60875614 | None:intergenic |
| GCAACAGGTTGTTACAAATG+CGG | 0.691238 | 4_2:-60875714 | Msa0612410:CDS |
| TATCAAAGCTAGGAAGACTG+TGG | 0.691472 | 4_2:+60872872 | None:intergenic |
| AATAGCGAAGAACGTAACCG+AGG | 0.724790 | 4_2:+60875493 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACAATTAATTAAGAAAA+AGG | + | chr4_2:60873054-60873073 | None:intergenic | 10.0% |
| !! | AATTTAGCAACTATTTAATT+TGG | - | chr4_2:60873289-60873308 | Msa0612410:intron | 15.0% |
| !!! | ATTTAGCAACTATTTAATTT+GGG | - | chr4_2:60873290-60873309 | Msa0612410:intron | 15.0% |
| !!! | TTTTTAAGGTTTGTTATTAT+TGG | + | chr4_2:60873712-60873731 | None:intergenic | 15.0% |
| !! | AATAACAAACCTTAAAAATA+AGG | - | chr4_2:60873714-60873733 | Msa0612410:intron | 15.0% |
| !!! | TAAAATCTAATTAGTTCTTT+TGG | + | chr4_2:60874781-60874800 | None:intergenic | 15.0% |
| !!! | ACTTAATTGTTTGTTTTGTT+AGG | - | chr4_2:60873103-60873122 | Msa0612410:intron | 20.0% |
| !! | AATTGATTGAAAGAGTAATA+CGG | + | chr4_2:60873185-60873204 | None:intergenic | 20.0% |
| !!! | TAACTTAGTTTGAAATTCAA+TGG | - | chr4_2:60873331-60873350 | Msa0612410:intron | 20.0% |
| !!! | TTTCTATATGTTGATTTTGA+AGG | - | chr4_2:60873356-60873375 | Msa0612410:intron | 20.0% |
| !! | TGTCATATTGATCAAATATT+CGG | - | chr4_2:60873412-60873431 | Msa0612410:intron | 20.0% |
| !! | ATTGATAAGAATGAACTTTA+TGG | - | chr4_2:60873519-60873538 | Msa0612410:intron | 20.0% |
| !!! | ATGCATATTTTTCTTTCAAT+TGG | - | chr4_2:60873973-60873992 | Msa0612410:intron | 20.0% |
| !! | TTGAAAAAAGGAAAATTAAG+AGG | + | chr4_2:60874555-60874574 | None:intergenic | 20.0% |
| !! | ATTCACATACAATTGAAAAA+AGG | + | chr4_2:60874567-60874586 | None:intergenic | 20.0% |
| !! | TTACAATAAATATCAAAGCT+AGG | + | chr4_2:60875607-60875626 | None:intergenic | 20.0% |
| ! | AACAAACAATTAAGTGATTG+CGG | + | chr4_2:60873098-60873117 | None:intergenic | 25.0% |
| !!! | CAACTATTTAATTTGGGATT+GGG | - | chr4_2:60873296-60873315 | Msa0612410:intron | 25.0% |
| ! | TGATTTCAGTATAATCTAGT+AGG | - | chr4_2:60873478-60873497 | Msa0612410:intron | 25.0% |
| ! | TTAAAAGTTCAGTGAATTAG+AGG | - | chr4_2:60873613-60873632 | Msa0612410:intron | 25.0% |
| ! | TTCAATTACACTCAAAACTT+TGG | + | chr4_2:60873646-60873665 | None:intergenic | 25.0% |
| ! | AGATGAGTACAAATATGATT+AGG | - | chr4_2:60873665-60873684 | Msa0612410:intron | 25.0% |
| !!! | TTAAGGTTTGTTATTATTGG+TGG | + | chr4_2:60873709-60873728 | None:intergenic | 25.0% |
| ! | AACCTTAAAAATAAGGACTT+TGG | - | chr4_2:60873721-60873740 | Msa0612410:intron | 25.0% |
| ! | AGTTATGAAACACATATGTT+GGG | + | chr4_2:60873928-60873947 | None:intergenic | 25.0% |
| ! | TAGTTATGAAACACATATGT+TGG | + | chr4_2:60873929-60873948 | None:intergenic | 25.0% |
| ! | TTAAACACAAAGTTTGAACA+AGG | + | chr4_2:60874154-60874173 | None:intergenic | 25.0% |
| ! | TTACTTGCGTTTGAATTAAT+AGG | - | chr4_2:60874360-60874379 | Msa0612410:intron | 25.0% |
| !! | TAGGTATTTTCTTAGATATG+TGG | - | chr4_2:60874379-60874398 | Msa0612410:intron | 25.0% |
| ! | TTCTAGACTAACTTTACTAT+AGG | + | chr4_2:60874430-60874449 | None:intergenic | 25.0% |
| ! | CAGGTGATTAATTCAATAAA+TGG | + | chr4_2:60874492-60874511 | None:intergenic | 25.0% |
| ! | TTTCTGAACAACTTTATAAC+AGG | + | chr4_2:60874511-60874530 | None:intergenic | 25.0% |
| ! | AAAAAGGAAAATTAAGAGGA+AGG | + | chr4_2:60874551-60874570 | None:intergenic | 25.0% |
| ! | ATGATCAAATTGTCAATTGT+TGG | + | chr4_2:60874621-60874640 | None:intergenic | 25.0% |
| !!! | ATGAAGGAATACATTGATTT+TGG | - | chr4_2:60874673-60874692 | Msa0612410:intron | 25.0% |
| !! | AACTGATTCATATTTCAAAC+AGG | - | chr4_2:60874705-60874724 | Msa0612410:intron | 25.0% |
| !! | ACTGATTCATATTTCAAACA+GGG | - | chr4_2:60874706-60874725 | Msa0612410:intron | 25.0% |
| ! | ATACAGCAAAATCCAATATA+GGG | + | chr4_2:60874834-60874853 | None:intergenic | 25.0% |
| ! | CAAAGAAATTAAACTCACTT+CGG | + | chr4_2:60874965-60874984 | None:intergenic | 25.0% |
| !! | TGAACATTTTCTTTTGTGAA+AGG | - | chr4_2:60875036-60875055 | Msa0612410:intron | 25.0% |
| !! | GAAATCTGTTAAAACACTTT+TGG | - | chr4_2:60875058-60875077 | Msa0612410:intron | 25.0% |
| ! | TATCATTAATAACACACTTC+TGG | + | chr4_2:60875141-60875160 | None:intergenic | 25.0% |
| !! | AGTGTGTTATTAATGATACA+AGG | - | chr4_2:60875143-60875162 | Msa0612410:intron | 25.0% |
| !! | GTGTGTTATTAATGATACAA+GGG | - | chr4_2:60875144-60875163 | Msa0612410:intron | 25.0% |
| ! | TCACTAAATAGAAGTGATAA+TGG | + | chr4_2:60875309-60875328 | None:intergenic | 25.0% |
| ! | TTAAATGAAGTCCCAAATAA+TGG | - | chr4_2:60875468-60875487 | Msa0612410:CDS | 25.0% |
| ! | AGAAGTCAACTATTAAATCA+CGG | + | chr4_2:60875682-60875701 | None:intergenic | 25.0% |
| CTCGAATGTGTATTGAAAAT+GGG | + | chr4_2:60872683-60872702 | None:intergenic | 30.0% | |
| TCTCGAATGTGTATTGAAAA+TGG | + | chr4_2:60872684-60872703 | None:intergenic | 30.0% | |
| TGAGATTAATTACAACCTCA+TGG | + | chr4_2:60873030-60873049 | None:intergenic | 30.0% | |
| ! | TTTTGTTAGGTTCGTGATTT+GGG | - | chr4_2:60873116-60873135 | Msa0612410:intron | 30.0% |
| !! | GCAACTATTTAATTTGGGAT+TGG | - | chr4_2:60873295-60873314 | Msa0612410:intron | 30.0% |
| !!! | TTGATTTTGAAGGTGTTTTG+TGG | - | chr4_2:60873366-60873385 | Msa0612410:intron | 30.0% |
| TGATCAAATATTCGGATTGA+CGG | - | chr4_2:60873420-60873439 | Msa0612410:intron | 30.0% | |
| !! | ATTTCTAGCATAATGTCAGA+AGG | - | chr4_2:60873590-60873609 | Msa0612410:CDS | 30.0% |
| !!! | AGCCAAAGTCCTTATTTTTA+AGG | + | chr4_2:60873726-60873745 | None:intergenic | 30.0% |
| CATTAGTTGAAGATGATTGA+TGG | + | chr4_2:60873956-60873975 | None:intergenic | 30.0% | |
| TAAAAACATAGCAGAGGAAT+TGG | + | chr4_2:60874028-60874047 | None:intergenic | 30.0% | |
| AAAGCATAAAAACATAGCAG+AGG | + | chr4_2:60874034-60874053 | None:intergenic | 30.0% | |
| TCAACAGATATAAAGCCATA+GGG | + | chr4_2:60874102-60874121 | None:intergenic | 30.0% | |
| TTCAACAGATATAAAGCCAT+AGG | + | chr4_2:60874103-60874122 | None:intergenic | 30.0% | |
| CTCTTTCTCTTAATTCTCTA+AGG | + | chr4_2:60874208-60874227 | None:intergenic | 30.0% | |
| TTAAGAGAAAGAGTTGCAAA+TGG | - | chr4_2:60874215-60874234 | Msa0612410:CDS | 30.0% | |
| CAATATTCCAGTGAACTATA+TGG | + | chr4_2:60874745-60874764 | None:intergenic | 30.0% | |
| TTTGCTAAGTATCCCTATAT+TGG | - | chr4_2:60874819-60874838 | Msa0612410:intron | 30.0% | |
| GATACAGCAAAATCCAATAT+AGG | + | chr4_2:60874835-60874854 | None:intergenic | 30.0% | |
| TGTGAGTAATCTGAATTGTT+TGG | - | chr4_2:60875106-60875125 | Msa0612410:intron | 30.0% | |
| AGACTGTTGTATTCTTTCAT+TGG | - | chr4_2:60875184-60875203 | Msa0612410:intron | 30.0% | |
| AGAAATCTAGAGACTTAAGA+AGG | + | chr4_2:60875247-60875266 | None:intergenic | 30.0% | |
| GATAAACCAAATCGTAAACA+AGG | - | chr4_2:60875327-60875346 | Msa0612410:CDS | 30.0% | |
| ! | ATTACCTTCTCTTTTATTGC+AGG | - | chr4_2:60875374-60875393 | Msa0612410:intron | 30.0% |
| !!! | TTTTCAGTTGTGCTACTTTT+GGG | + | chr4_2:60875444-60875463 | None:intergenic | 30.0% |
| GAAGTCAACTATTAAATCAC+GGG | + | chr4_2:60875681-60875700 | None:intergenic | 30.0% | |
| ! | GTGATTTAATAGTTGACTTC+TGG | - | chr4_2:60875681-60875700 | Msa0612410:CDS | 30.0% |
| ! | ATTTAATAGTTGACTTCTGG+TGG | - | chr4_2:60875684-60875703 | Msa0612410:CDS | 30.0% |
| TACATTGCAATCTTGAAGAT+TGG | - | chr4_2:60875734-60875753 | Msa0612410:CDS | 30.0% | |
| TGTTTCGAAAGAAAATTGGT+TGG | - | chr4_2:60875759-60875778 | Msa0612410:five_prime_UTR | 30.0% | |
| AGAAGAGAAGAGAAAATGTC+AGG | - | chr4_2:60872719-60872738 | Msa0612410:three_prime_UTR | 35.0% | |
| !! | GTTTTGTTAGGTTCGTGATT+TGG | - | chr4_2:60873115-60873134 | Msa0612410:intron | 35.0% |
| !! | CTATTTAATTTGGGATTGGG+TGG | - | chr4_2:60873299-60873318 | Msa0612410:intron | 35.0% |
| !! | AGGTGTTTTGTGGTATTGAA+AGG | - | chr4_2:60873376-60873395 | Msa0612410:intron | 35.0% |
| CATTTCAATCATTCAAGCAG+TGG | + | chr4_2:60873553-60873572 | None:intergenic | 35.0% | |
| !! | TTGGTGGTGAAGTAATTGTT+AGG | + | chr4_2:60873693-60873712 | None:intergenic | 35.0% |
| TAATCCCTTCTAATGGCAAT+TGG | + | chr4_2:60873798-60873817 | None:intergenic | 35.0% | |
| CATTAGAAGGGATTAACTGT+CGG | - | chr4_2:60873803-60873822 | Msa0612410:intron | 35.0% | |
| TTAGTCTCGTGTATGCAAAA+AGG | - | chr4_2:60873873-60873892 | Msa0612410:intron | 35.0% | |
| !! | TTAATTCTCTAAGGCTAGTC+TGG | + | chr4_2:60874199-60874218 | None:intergenic | 35.0% |
| ! | ATTGTTGGTTGTAATCTCTC+TGG | + | chr4_2:60874606-60874625 | None:intergenic | 35.0% |
| ATTTGATCATTGAAGCTCAC+TGG | - | chr4_2:60874631-60874650 | Msa0612410:intron | 35.0% | |
| ! | TCATTTTGTCTACCTATGGT+TGG | + | chr4_2:60874657-60874676 | None:intergenic | 35.0% |
| ACCATAGGTAGACAAAATGA+AGG | - | chr4_2:60874657-60874676 | Msa0612410:intron | 35.0% | |
| ! | TCCTTCATTTTGTCTACCTA+TGG | + | chr4_2:60874661-60874680 | None:intergenic | 35.0% |
| GTGAACTATATGGAATCAGT+TGG | + | chr4_2:60874735-60874754 | None:intergenic | 35.0% | |
| ! | ACTGATTCCATATAGTTCAC+TGG | - | chr4_2:60874735-60874754 | Msa0612410:intron | 35.0% |
| ! | TTTGCTGTATCTGCAGAAAA+TGG | - | chr4_2:60874844-60874863 | Msa0612410:intron | 35.0% |
| TTGCTGTATCTGCAGAAAAT+GGG | - | chr4_2:60874845-60874864 | Msa0612410:intron | 35.0% | |
| TGAATGTCGTTAACAGTTTC+AGG | + | chr4_2:60874907-60874926 | None:intergenic | 35.0% | |
| !! | ACATGCTGACTTCATAACAA+AGG | + | chr4_2:60875280-60875299 | None:intergenic | 35.0% |
| ! | TCAGATCCTTGTTTACGATT+TGG | + | chr4_2:60875336-60875355 | None:intergenic | 35.0% |
| ATCTGATCCTAGGTTTGTAA+CGG | - | chr4_2:60875350-60875369 | Msa0612410:intron | 35.0% | |
| !!! | CTTTTCAGTTGTGCTACTTT+TGG | + | chr4_2:60875445-60875464 | None:intergenic | 35.0% |
| ! | ACAGACTGGTTCCATTATTT+GGG | + | chr4_2:60875482-60875501 | None:intergenic | 35.0% |
| TCAACCTATTTGCTTCCATA+CGG | + | chr4_2:60875539-60875558 | None:intergenic | 35.0% | |
| ! | TATGGAAGCAAATAGGTTGA+AGG | - | chr4_2:60875539-60875558 | Msa0612410:CDS | 35.0% |
| GGCATGTTTCGAAAGAAAAT+TGG | - | chr4_2:60875755-60875774 | Msa0612410:five_prime_UTR | 35.0% | |
| GAAGAGAAAATGTCAGGATC+CGG | - | chr4_2:60872725-60872744 | Msa0612410:three_prime_UTR | 40.0% | |
| GCAACAGGTTGTTACAAATG+CGG | - | chr4_2:60872752-60872771 | Msa0612410:three_prime_UTR | 40.0% | |
| ! | TAGGGTTTGGATTGGGATTT+GGG | + | chr4_2:60872817-60872836 | None:intergenic | 40.0% |
| ! | TTAGGGTTTGGATTGGGATT+TGG | + | chr4_2:60872818-60872837 | None:intergenic | 40.0% |
| ATCATCAGAGAGAAGAAGCT+CGG | + | chr4_2:60872951-60872970 | None:intergenic | 40.0% | |
| TGCTTGACTTATACTCTGAC+TGG | - | chr4_2:60873144-60873163 | Msa0612410:intron | 40.0% | |
| TTGAGAAAGTTGCTGCTACT+AGG | - | chr4_2:60873216-60873235 | Msa0612410:intron | 40.0% | |
| AGTTCAGTGAATTAGAGGTC+AGG | - | chr4_2:60873618-60873637 | Msa0612410:intron | 40.0% | |
| ! | CTAATGGCAATTGGTGACAA+TGG | + | chr4_2:60873789-60873808 | None:intergenic | 40.0% |
| TGTCACCAATTGCCATTAGA+AGG | - | chr4_2:60873790-60873809 | Msa0612410:intron | 40.0% | |
| GTCACCAATTGCCATTAGAA+GGG | - | chr4_2:60873791-60873810 | Msa0612410:intron | 40.0% | |
| CGACAGTTAATCCCTTCTAA+TGG | + | chr4_2:60873805-60873824 | None:intergenic | 40.0% | |
| AGAGAAAGAGTTGCAAATGG+TGG | - | chr4_2:60874218-60874237 | Msa0612410:CDS | 40.0% | |
| GAGAAAGAGTTGCAAATGGT+GGG | - | chr4_2:60874219-60874238 | Msa0612410:CDS | 40.0% | |
| AGAAAGAGTTGCAAATGGTG+GGG | - | chr4_2:60874220-60874239 | Msa0612410:CDS | 40.0% | |
| GATTACCTTGTTCACCATCT+GGG | + | chr4_2:60874289-60874308 | None:intergenic | 40.0% | |
| AGATTACCTTGTTCACCATC+TGG | + | chr4_2:60874290-60874309 | None:intergenic | 40.0% | |
| !! | AATTAAGAGGAAGGCGTTCT+GGG | + | chr4_2:60874542-60874561 | None:intergenic | 40.0% |
| !! | AAATTAAGAGGAAGGCGTTC+TGG | + | chr4_2:60874543-60874562 | None:intergenic | 40.0% |
| TGCTGTATCTGCAGAAAATG+GGG | - | chr4_2:60874846-60874865 | Msa0612410:intron | 40.0% | |
| TTGGAGACTATTTGAACGTC+TGG | - | chr4_2:60875203-60875222 | Msa0612410:intron | 40.0% | |
| GTAAACAAGGATCTGATCCT+AGG | - | chr4_2:60875340-60875359 | Msa0612410:CDS | 40.0% | |
| GGTTCCTGCAATAAAAGAGA+AGG | + | chr4_2:60875381-60875400 | None:intergenic | 40.0% | |
| ! | GCAGAAATCACATTTTGCAC+GGG | + | chr4_2:60875411-60875430 | None:intergenic | 40.0% |
| ! | CGCAGAAATCACATTTTGCA+CGG | + | chr4_2:60875412-60875431 | None:intergenic | 40.0% |
| ! | GACAGACTGGTTCCATTATT+TGG | + | chr4_2:60875483-60875502 | None:intergenic | 40.0% |
| CAACCTATTTGCTTCCATAC+GGG | + | chr4_2:60875538-60875557 | None:intergenic | 40.0% | |
| !! | ATAGGTTGAAGGCACTAGAA+AGG | - | chr4_2:60875550-60875569 | Msa0612410:CDS | 40.0% |
| TATCAAAGCTAGGAAGACTG+TGG | + | chr4_2:60875597-60875616 | None:intergenic | 40.0% | |
| ACATTCGAGACAGAGAGAGA+AGG | - | chr4_2:60872694-60872713 | Msa0612410:three_prime_UTR | 45.0% | |
| ! | GTAACAACCTGTTGCTGTTC+CGG | + | chr4_2:60872747-60872766 | None:intergenic | 45.0% |
| ! | AGGGTTTGGATTGGGATTTG+GGG | + | chr4_2:60872816-60872835 | None:intergenic | 45.0% |
| ! | GTGGTGTTAGGGTTTGGATT+GGG | + | chr4_2:60872824-60872843 | None:intergenic | 45.0% |
| !! | AGGCTTTTTGGGCTTTTCGA+CGG | + | chr4_2:60872903-60872922 | None:intergenic | 45.0% |
| TCATCAGAGAGAAGAAGCTC+GGG | + | chr4_2:60872950-60872969 | None:intergenic | 45.0% | |
| GAGCTTCTTCTCTCTGATGA+TGG | - | chr4_2:60872950-60872969 | Msa0612410:CDS | 45.0% | |
| AATAGCGAAGAACGTAACCG+AGG | + | chr4_2:60872976-60872995 | None:intergenic | 45.0% | |
| ! | CGTGGTATTTGAAGTTGCGA+GGG | + | chr4_2:60873000-60873019 | None:intergenic | 45.0% |
| CCTCGCAACTTCAAATACCA+CGG | - | chr4_2:60872998-60873017 | Msa0612410:CDS | 45.0% | |
| AACTTCAAATACCACGGTCG+CGG | - | chr4_2:60873004-60873023 | Msa0612410:CDS | 45.0% | |
| TTTACTCGTGAGTCAGCTCT+AGG | - | chr4_2:60873757-60873776 | Msa0612410:intron | 45.0% | |
| !! | TCTAAGGCTAGTCTGGTTAG+AGG | + | chr4_2:60874192-60874211 | None:intergenic | 45.0% |
| GGTAATGCCGTTACAAACCT+AGG | + | chr4_2:60875360-60875379 | None:intergenic | 45.0% | |
| ! | ATAGTTGACTTCTGGTGGTC+TGG | - | chr4_2:60875689-60875708 | Msa0612410:CDS | 45.0% |
| TGTTACAAATGCGGCAGACC+AGG | - | chr4_2:60872761-60872780 | Msa0612410:three_prime_UTR | 50.0% | |
| ! | GTTTGGATTGGGATTTGGGG+CGG | + | chr4_2:60872813-60872832 | None:intergenic | 50.0% |
| ! | GGTGGTGTTAGGGTTTGGAT+TGG | + | chr4_2:60872825-60872844 | None:intergenic | 50.0% |
| !! | CTTTTTGGGCTTTTCGACGG+CGG | + | chr4_2:60872900-60872919 | None:intergenic | 50.0% |
| ! | AGAAGCTCGGGAGTGAGTTT+TGG | + | chr4_2:60872938-60872957 | None:intergenic | 50.0% |
| !! | CTTCTCTCTGATGATGGCCT+CGG | - | chr4_2:60872956-60872975 | Msa0612410:CDS | 50.0% |
| ! | CCGTGGTATTTGAAGTTGCG+AGG | + | chr4_2:60873001-60873020 | None:intergenic | 50.0% |
| TGCTGCTACTAGGCGTGTTA+AGG | - | chr4_2:60873226-60873245 | Msa0612410:intron | 50.0% | |
| GGGAGAGAGATACAGAGCAA+TGG | + | chr4_2:60874082-60874101 | None:intergenic | 50.0% | |
| GCTCTGTATCTCTCTCCCTA+TGG | - | chr4_2:60874084-60874103 | Msa0612410:intron | 50.0% | |
| ATGCTGTTGTCCACAACTGG+TGG | + | chr4_2:60874266-60874285 | None:intergenic | 50.0% | |
| AGCATCCCAGATGGTGAACA+AGG | - | chr4_2:60874281-60874300 | Msa0612410:intron | 50.0% | |
| !! | ACATTTTGCACGGGCTGAGA+AGG | + | chr4_2:60875402-60875421 | None:intergenic | 50.0% |
| GAGCCCGTATGGAAGCAAAT+AGG | - | chr4_2:60875532-60875551 | Msa0612410:CDS | 50.0% | |
| ! | AAGACTGTGGTATGCTGGCT+CGG | + | chr4_2:60875584-60875603 | None:intergenic | 50.0% |
| CTAGGAAGACTGTGGTATGC+TGG | + | chr4_2:60875589-60875608 | None:intergenic | 50.0% | |
| TCAGGATCCGGAACAGCAAC+AGG | - | chr4_2:60872737-60872756 | Msa0612410:three_prime_UTR | 55.0% | |
| ! | TTGGGATTTGGGGCGGTGAA+AGG | + | chr4_2:60872806-60872825 | None:intergenic | 55.0% |
| ! | GAGGTGGTGGTGTTAGGGTT+TGG | + | chr4_2:60872830-60872849 | None:intergenic | 55.0% |
| GGTTTGAAGGTGGAGGTAGG+TGG | + | chr4_2:60872863-60872882 | None:intergenic | 55.0% | |
| GAGGGTTTGAAGGTGGAGGT+AGG | + | chr4_2:60872866-60872885 | None:intergenic | 55.0% | |
| ACCTCCACCTTCAAACCCTC+TGG | - | chr4_2:60872866-60872885 | Msa0612410:exon | 55.0% | |
| TCCAGAGGGTTTGAAGGTGG+AGG | + | chr4_2:60872870-60872889 | None:intergenic | 55.0% | |
| TCTGGGTCCAGAGGGTTTGA+AGG | + | chr4_2:60872876-60872895 | None:intergenic | 55.0% | |
| ! | CGGGTACGTGGAGGCTTTTT+GGG | + | chr4_2:60872914-60872933 | None:intergenic | 55.0% |
| ! | ACGGGTACGTGGAGGCTTTT+TGG | + | chr4_2:60872915-60872934 | None:intergenic | 55.0% |
| !!! | AGTTTTGGACGGGTACGTGG+AGG | + | chr4_2:60872923-60872942 | None:intergenic | 55.0% |
| !!! | GTGAGTTTTGGACGGGTACG+TGG | + | chr4_2:60872926-60872945 | None:intergenic | 55.0% |
| !!! | CTCGGGAGTGAGTTTTGGAC+GGG | + | chr4_2:60872933-60872952 | None:intergenic | 55.0% |
| !!! | GCTCGGGAGTGAGTTTTGGA+CGG | + | chr4_2:60872934-60872953 | None:intergenic | 55.0% |
| GGTGGTTCACGCAACTTCGA+TGG | + | chr4_2:60874248-60874267 | None:intergenic | 55.0% | |
| GTTGCGTGAACCACCAGTTG+TGG | - | chr4_2:60874253-60874272 | Msa0612410:CDS | 55.0% | |
| GGGATGCTGTTGTCCACAAC+TGG | + | chr4_2:60874269-60874288 | None:intergenic | 55.0% | |
| GTGGACAACAGCATCCCAGA+TGG | - | chr4_2:60874272-60874291 | Msa0612410:intron | 55.0% | |
| !! | AGAGGAAGGCGTTCTGGGTA+AGG | + | chr4_2:60874537-60874556 | None:intergenic | 55.0% |
| GAAGCTCACTGGCCAACCAT+AGG | - | chr4_2:60874642-60874661 | Msa0612410:intron | 55.0% | |
| TGCTGTTATCTCAGCGCTGC+TGG | + | chr4_2:60875505-60875524 | None:intergenic | 55.0% | |
| !! | AGACTGTGGTATGCTGGCTC+GGG | + | chr4_2:60875583-60875602 | None:intergenic | 55.0% |
| AATGCGGCAGACCAGGTCAC+TGG | - | chr4_2:60872768-60872787 | Msa0612410:three_prime_UTR | 60.0% | |
| ! | CGGTGGAGGTGGTGGTGTTA+GGG | + | chr4_2:60872835-60872854 | None:intergenic | 60.0% |
| GGTGGAGGTAGGTGGAACTG+CGG | + | chr4_2:60872855-60872874 | None:intergenic | 60.0% | |
| GGGTCCAGAGGGTTTGAAGG+TGG | + | chr4_2:60872873-60872892 | None:intergenic | 60.0% | |
| ! | GGCTTTTCGACGGCGGATCT+GGG | + | chr4_2:60872893-60872912 | None:intergenic | 60.0% |
| AGCAGAGCAGAGAGCCCGTA+TGG | - | chr4_2:60875521-60875540 | Msa0612410:CDS | 60.0% | |
| CAGTCGCGTGACCAGTGACC+TGG | + | chr4_2:60872782-60872801 | None:intergenic | 65.0% | |
| ! | GCGGTGGAGGTGGTGGTGTT+AGG | + | chr4_2:60872836-60872855 | None:intergenic | 65.0% |
| TGGAACTGCGGTGGAGGTGG+TGG | + | chr4_2:60872843-60872862 | None:intergenic | 65.0% | |
| AGGTGGAACTGCGGTGGAGG+TGG | + | chr4_2:60872846-60872865 | None:intergenic | 65.0% | |
| GGTAGGTGGAACTGCGGTGG+AGG | + | chr4_2:60872849-60872868 | None:intergenic | 65.0% | |
| GGAGGTAGGTGGAACTGCGG+TGG | + | chr4_2:60872852-60872871 | None:intergenic | 65.0% | |
| ACGGCGGATCTGGGTCCAGA+GGG | + | chr4_2:60872884-60872903 | None:intergenic | 65.0% | |
| ! | GGGCTTTTCGACGGCGGATC+TGG | + | chr4_2:60872894-60872913 | None:intergenic | 65.0% |
| ATACCACGGTCGCGGCCATG+AGG | - | chr4_2:60873012-60873031 | Msa0612410:CDS | 65.0% | |
| CTCAGCGCTGCTGGACAGAC+TGG | + | chr4_2:60875496-60875515 | None:intergenic | 65.0% | |
| GACGGCGGATCTGGGTCCAG+AGG | + | chr4_2:60872885-60872904 | None:intergenic | 70.0% | |
| CAACCTCATGGCCGCGACCG+TGG | + | chr4_2:60873018-60873037 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 60872661 | 60875827 | 60872661 | ID=Msa0612410;Name=Msa0612410 |
| chr4_2 | mRNA | 60872661 | 60875827 | 60872661 | ID=Msa0612410-mRNA-1;Parent=Msa0612410;Name=Msa0612410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=73|1|1|1|1|1|5|219|281 |
| chr4_2 | exon | 60872661 | 60873092 | 60872661 | ID=Msa0612410-mRNA-1:exon:16432;Parent=Msa0612410-mRNA-1 |
| chr4_2 | exon | 60873522 | 60873628 | 60873522 | ID=Msa0612410-mRNA-1:exon:16431;Parent=Msa0612410-mRNA-1 |
| chr4_2 | exon | 60874186 | 60874288 | 60874186 | ID=Msa0612410-mRNA-1:exon:16430;Parent=Msa0612410-mRNA-1 |
| chr4_2 | exon | 60875241 | 60875363 | 60875241 | ID=Msa0612410-mRNA-1:exon:16429;Parent=Msa0612410-mRNA-1 |
| chr4_2 | exon | 60875455 | 60875827 | 60875455 | ID=Msa0612410-mRNA-1:exon:16428;Parent=Msa0612410-mRNA-1 |
| chr4_2 | five_prime_UTR | 60875755 | 60875827 | 60875755 | ID=Msa0612410-mRNA-1:five_prime_utr;Parent=Msa0612410-mRNA-1 |
| chr4_2 | CDS | 60875455 | 60875754 | 60875455 | ID=Msa0612410-mRNA-1:cds;Parent=Msa0612410-mRNA-1 |
| chr4_2 | CDS | 60875241 | 60875363 | 60875241 | ID=Msa0612410-mRNA-1:cds;Parent=Msa0612410-mRNA-1 |
| chr4_2 | CDS | 60874186 | 60874288 | 60874186 | ID=Msa0612410-mRNA-1:cds;Parent=Msa0612410-mRNA-1 |
| chr4_2 | CDS | 60873522 | 60873628 | 60873522 | ID=Msa0612410-mRNA-1:cds;Parent=Msa0612410-mRNA-1 |
| chr4_2 | CDS | 60872880 | 60873092 | 60872880 | ID=Msa0612410-mRNA-1:cds;Parent=Msa0612410-mRNA-1 |
| chr4_2 | three_prime_UTR | 60872661 | 60872879 | 60872661 | ID=Msa0612410-mRNA-1:three_prime_utr;Parent=Msa0612410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
