AlfalfaGEDB | MS.gene41834

M. sativa cultivar XinJiangDaYe / MS.gene41834

KEGG: K03687
GO: GO:0000166 GO:0000774 GO:0003674 GO:0005488 GO:0005515 GO:0006457 GO:0008150 GO:0009987 GO:0017076 GO:0030234 GO:0030554 GO:0036094 GO:0042802 GO:0042803 GO:0046983 GO:0051087 GO:0060589 GO:0060590 GO:0097159 GO:0098772 GO:1901265 GO:1901363
PFAM: PF01025.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41834.t1	XP_003624768.1	97.6	335	8	0	1	335	1	335	7.80E-171	609.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41834.t1	A9B9L4	36.1	244	150	2	85	327	6	244	2.0e-34	147.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41834.t1	G7L2M8	97.6	335	8	0	1	335	1	335	5.6e-171	609.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene41834	0.8475	1.11E-59	-1.69E-46
MS.gene049171	MS.gene41834	0.837932	3.88E-57	-1.69E-46
MS.gene049173	MS.gene41834	0.828265	9.89E-55	-1.69E-46
MS.gene049217	MS.gene41834	0.906277	1.76E-80	-1.69E-46
MS.gene049222	MS.gene41834	0.874271	7.69E-68	-1.69E-46
MS.gene049232	MS.gene41834	0.804573	2.02E-49	-1.69E-46
MS.gene049285	MS.gene41834	0.885359	8.70E-72	-1.69E-46
MS.gene049320	MS.gene41834	0.875528	2.87E-68	-1.69E-46
MS.gene04939	MS.gene41834	0.831112	2.01E-55	-1.69E-46
MS.gene049427	MS.gene41834	0.873844	1.07E-67	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41834.t1	MTR_7g087250	97.612	335	8	0	1	335	1	335	0.0	659
MS.gene41834.t1	MTR_7g087250	98.047	256	5	0	1	256	1	256	0.0	503
MS.gene41834.t1	MTR_3g073450	47.030	202	105	1	103	304	84	283	3.47e-57	187

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41834.t1	AT5G17710	59.615	312	112	6	1	305	1	305	1.01e-109	323
MS.gene41834.t1	AT5G17710	58.974	312	112	6	1	305	1	303	5.80e-108	318
MS.gene41834.t1	AT5G17710	58.974	312	112	6	1	305	1	303	5.80e-108	318
MS.gene41834.t1	AT1G36390	51.613	186	90	0	115	300	78	263	5.18e-64	204
MS.gene41834.t1	AT1G36390	51.613	186	90	0	115	300	78	263	5.18e-64	204
MS.gene41834.t1	AT4G26780	30.065	153	88	2	163	299	166	315	4.26e-12	66.6

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Find 108 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCGAAAACTAAGGAT+CGG	0.611204	7.3:-21665425	MS.gene41834:CDS
AAATGCTCAAGGGGAAGTTG+TGG	0.607604	7.3:-21665345	MS.gene41834:CDS
AACTTGACGAACCGGGGAGT+GGG	0.515310	7.3:+21667824	None:intergenic
AAGGTACTAACTTGACGAAC+CGG	0.414480	7.3:+21667816	None:intergenic
AAGTGGTGAAGGTCTTCTTC+TGG	0.348290	7.3:+21667871	None:intergenic
AATACTATCAGAGGTGAAGC+AGG	0.540458	7.3:+21665590	None:intergenic
ACATGAAGCAATTATGCGTG+AGG	0.649725	7.3:-21664303	MS.gene41834:CDS
ACCTACTATCTCATCATCAA+TGG	0.481367	7.3:+21665493	None:intergenic
ACTGGTCACAAATGCTCAAG+GGG	0.630703	7.3:-21665354	MS.gene41834:CDS
ACTGTCCTGAGAAGTTTCAT+TGG	0.438344	7.3:+21664127	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATCGAAAACTAAGGAT+CGG	-	chr7.3:21666643-21666662	MS.gene41834:intron	30.0%
ACACTATATCAAGTTTCTTC+AGG	-	chr7.3:21667389-21667408	MS.gene41834:intron	30.0%
ACTCAAACAAAGGAAATAGT+TGG	-	chr7.3:21666190-21666209	MS.gene41834:intron	30.0%
AGAAAAGATATTGAGAGAGA+TGG	+	chr7.3:21665999-21666018	None:intergenic	30.0%
ATCTCCTAGAAATTCCAAAT+TGG	-	chr7.3:21665591-21665610	MS.gene41834:CDS	30.0%
ATCTGTAGTCTCCATTTAAT+GGG	-	chr7.3:21665448-21665467	MS.gene41834:CDS	30.0%
ATCTTAATGGTTTAGACAAC+AGG	+	chr7.3:21665337-21665356	None:intergenic	30.0%
CATACTTCAAGAATTCAGAA+AGG	-	chr7.3:21667813-21667832	MS.gene41834:CDS	30.0%
CCAGCAAATTAACATAAACA+AGG	+	chr7.3:21666370-21666389	None:intergenic	30.0%
CGGAAAAATTAAAATCGAAG+GGG	-	chr7.3:21664892-21664911	MS.gene41834:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	21664088	21668002	21664088	ID=MS.gene41834
chr7.3	mRNA	21664088	21668002	21664088	ID=MS.gene41834.t1;Parent=MS.gene41834
chr7.3	exon	21667754	21668002	21667754	ID=MS.gene41834.t1.exon1;Parent=MS.gene41834.t1
chr7.3	CDS	21667754	21668002	21667754	ID=cds.MS.gene41834.t1;Parent=MS.gene41834.t1
chr7.3	exon	21665166	21665684	21665166	ID=MS.gene41834.t1.exon2;Parent=MS.gene41834.t1
chr7.3	CDS	21665166	21665684	21665166	ID=cds.MS.gene41834.t1;Parent=MS.gene41834.t1
chr7.3	exon	21664088	21664327	21664088	ID=MS.gene41834.t1.exon3;Parent=MS.gene41834.t1
chr7.3	CDS	21664088	21664327	21664088	ID=cds.MS.gene41834.t1;Parent=MS.gene41834.t1

Gene Sequence

>MS.gene41834

ATGGCCACCGTCCTCCGAACTCCCACATTCCGGCCATCCCCAACCCTTCTCACCACCGCCGCCACCTCTTCCAATCACTCCAGAACCTCACGCGTTTCCGTCGCATCCTCCAGAAGAAGACCTTCACCACTTAAATCCCACCGGTTCGGTTCAATTCCCACTCCCCGGTTCGTCAAGTTAGTACCTTTTGCTTTTGACGGAGATACCGAGGCACCGCAAGTTCAAGATTCACCCGAGGTTCAGGTTCTGGTAAGTCTTCTAATGTATTTTTGTTTTGTGAATACTTAATTTGTTCACTGCTTAGTTGAATTTTACTTTTAGATTGTAAATTGCTGTTCAAATTTGTGTTTTTCGTGTGCATAGTTGTTAATTAGAAAAAGGTTTATTCGAATTTCGAAGTTGTATTTGTTTCTGCTACAGAATCAACTATTAGGTTAAGCTTTGGTTCTGTTTTCAGTAGTTTTGTATTTGTTTGGAGGATTCACAACATTTTTCATTTGTTTTCAGTTTAATTACAGACGTAACACTTGTTTTCAAACATAGTTTTAAGCTGCGAACTTTGATATTGCGACAAATAGTAGGGAAATGCAGCTGATGCAGCCGCAATTGCAGTTGCGACACCGTTGCAGACACCTCTAAAGCCTTTATGTTACGGGAGCAATTGCAGTTGCATACTGCAATTTAGAACTAACGAATTACAATTTGTTTTCTGTATTTTTTGCTATTGTTTGTGCAAACCTTTGAGAGCAAGAAACAAATTGGATGCCAGAAGAGATTTTTGTAATTAAAACAGAAAATGGGAATCGGAAAAATTAAAATCGAAGGGGAATTTGTTTTTCTGGTCATTTGCTCTCTCTTTCTTTATATATTAGTTATATCACTAACAAAACGTGTGGAAGTGGTGGTTTGTCTTTTTCGTATTGTTATGTTTTTATTGCATTGGCTATCCTGTATTGTAAGGGGTCTGTGAGCAATACATGGTTTAAAATTTTGAATTGGGTGTAGAAGTGATGTAAGGGTAGAGTCCAGGTAGGTTACTAACTATTAGCAAAGAGTGGAGAAGGATCTGGCGGAGAAAGAGTCTAAAATGAAAATGACTCCTTTTTCTGGTGTAACTGTACTCTAAAGAAGACAATTCAGCTTTTATAGTGCAAGCTAAGACATTTCAGACTCTATGACCTTACAACGTAGTGCACACTTGTTTGAGCTTCTTTTTGGAGAAATAATTTTTGTTTTCGAACTGAAACCTGTTGTCTAAACCATTAAGATTTTGAATTCAAACTGTTTATAGTTATACATGATTTTTGATTGAATATTATGACAAAACTTTCTGTCATTGTTTGATTTATGTAAGTGTTTCATCTGTAGTCTCCATTTAATGGGAAAAGGCTTTGATAGTTATTGTTTTCTTTGTTGTAATTATTTTTCTAAAATCCTCTCGAGAAGCTGACAAAAAAAAGTCATGATTATTTCCTGTAATAAGCTAATCCAAAGATGCATCCAATCTCCTAGAAATTCCAAATTGGAATTATAGAACTACAAAGTTTTAGGTACAACTTTAAAGAAACCAAGTTACCAGGGAACAACTCCTGAATCGTAAACCTTAGCACATATTACCAACGCCAGCCCATTAGCATCACGAGTCCTTGGGGGCTTACAAGTACTAGATAACTATAACAATTAATTAACATAATACTAAGGTAAAGTATTGCCCATAAACAGAAACCACAAATATAAATTACAAGATTTTGGAAATATAAATATTCCCCAAATAGTTATATTCATTTTCACTTTCACTATATACGCTACTCTCCCTCCATAAGTTTACTTGAACCCTGTTAACAACCTTGAAAGAAAGTATATAAGGATGTTTGGTATTATTTTGTCTCTATATAATTTAATTGATTTCCATCTCTCTCAATATCTTTTCTGTTTTTTTGCCAAAAATACTGTGCTTGTATATCATTCGCTTCTTTAGCATATGCAGTACTATCGCTATCATCGTATATCTTGTTCTTCCTAATTTAGAGACATTTTAAATTGCATGAAGCCTTAGTTAAAGCTTATTTGTGACTGTTAAATTTTATATGGAATTTTGAGTAACTCAAACAAAGGAAATAGTTGGGTCAATAATTTGAAGTTTTTATTATTACTATTATTATTGTTGTTGGTGTTGTTGTTATTTGTGTTGTTTTTTTTTTTTTGAGGGAGTTATTTGTGTTGTTGTTGTTGTTGTTATTTATGATTTCTTTTGTGGAAATTGAAGTTTTATCATAGTTCCTTGTTTATGTTAATTTGCTGGTACACCAATTCAACAGGACTCTACAGATGGTGCTGCTGATGTGGAGGAGAGTACAGGTGATGATGAGGTCAGCGACGCTGGTGAAGTACCTGCTTCACCTCTGATAGTATTACTTCAGTCATACAAAGAAGCACTAGCTAATAATGATGCAGTCAAAGTTGCTGAGTTGGAATCATCATTAAAATCCATTGATGATGAGATAGTAGGTCTTGAAGGGAAAATAGCCTCCTTATCCGAAGAGTTATCAATAGAAAAAGATCGAAAACTAAGGATCGGTGCAGACTTTGACAATTATCGGAAGAGAACCGACAGAGATCGCCTATCACTGGTCACAAATGCTCAAGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCTAAAGCTCAGATCAAGGTGGAGACAGAGGGGGAGGAGAAAATAAACAACAGCTATCAAAGCATATATAAGCAGTTCATTGAAATTCTAAACTCACTTGGAGTTGAGCCAGTGGATACGGTTGGAAATCCCTTTGATCCAATGGTAAGTTAATCATCAATTTCAATTTATAGTTGAGTTCAAATATATCCTTCTTTCTTTCTACATAGAGAAAATCTTATTATCATGCAGGTGATAGTGATTTTTCCGTAATGAAGCTGATAAATTTCTTTTTTTGCAAATGGCAGTAGTGCACTTAACCTTTTATATTTACATTGTCTTAGTACCTGTCTTTCAATATTGTTGGCGGTCAATGTTTTTGGTGGATTGTTTGTAGACACTTTACAGTTACACTAGTTTTCTCTTTGCCTCATGAAGTATAATTTTTGTCATCTTTGAATTATTGCAATATGTTTTCCCATTCTCTGAAAAATCTCTTAACTTTGTTTTAATATTTTGACCGACCTCTTTCGTTTATATTTTTGGCATAATGCTGTCATCTATGATTTATGCAGGGGCGCAAACCAGTTGGCTCGAAATTCAATCGTGTACTTGCTGAACTTTTTCAAACACTATATCAAGTTTCTTCAGGTTTCCTGAAGACCTGGAAACACTTTTAACTCTTAGCAATTCTCGATTGTTTCGAGCCAACTTGGTGAGTTTAAGAATGTGTCACAGAGTCGAGAAAAAGTAGGCTTTGTAGCAATGTCTCACAAATGTGTATAAGAATATGAACACATGTTCTTAGTTAAAGAATTATTTTCAGTTGGATGCTTGTAAAATGATTTGACTCACAGTTTTGCCTCAGCTACTGCCTCAAATGAAACATTTGGTGCTTGGTCTTTTTTTCATCAATATTTTTACACGTTTCTTAAGATATAGGAGATTGATAATCTTGATAATTTTTTTTCTGATAACTATGTTTTCACTTTACTTGTAAAAGCTACATGAAGCAATTATGCGTGAGGATTCTGATGAATTTGAAGATGGCATCATACTTCAAGAATTCAGAAAGGGTTTTAAACTTGGTGACCGCCTCTTACGTCCATCAATGGTGAAGGTATCAGCTGGTCCAGGACCTGCAAAGCCGGAACAAGAAGCACCACAGGAAGAGCAAGTCACCAATGAAACTTCTCAGGACAGTAAAGAGAATGATGGCAACACAGAAACAGAGTCCGCTTGA

Protein sequence

>MS.gene41834.t1

MATVLRTPTFRPSPTLLTTAATSSNHSRTSRVSVASSRRRPSPLKSHRFGSIPTPRFVKLVPFAFDGDTEAPQVQDSPEVQVLDSTDGAADVEESTGDDEVSDAGEVPASPLIVLLQSYKEALANNDAVKVAELESSLKSIDDEIVGLEGKIASLSEELSIEKDRKLRIGADFDNYRKRTDRDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVDTVGNPFDPMLHEAIMREDSDEFEDGIILQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEAPQEEQVTNETSQDSKENDGNTETESA