AlfalfaGEDB | MsG0180000366.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000366.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000366.01.T01	XP_013465938.1	81.955	266	8	1	1	266	1	226	4.85E-151	431

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000366.01.T01	I3SWK3	81.955	266	8	1	1	266	1	226	2.32e-151	431

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048773.01	MsG0180000366.01	0.817137	3.853355e-52	2.783229e-49
MsG0080048777.01	MsG0180000366.01	0.817940	2.540148e-52	1.875492e-49
MsG0080048780.01	MsG0180000366.01	0.824273	8.825695e-54	7.780140e-51
MsG0080048876.01	MsG0180000366.01	0.820347	7.195649e-53	5.679251e-50
MsG0080049039.01	MsG0180000366.01	0.803733	3.028555e-49	1.533489e-46
MsG0080049040.01	MsG0180000366.01	0.837249	5.811135e-57	7.503982e-54
MsG0080049068.01	MsG0180000366.01	0.817691	2.891755e-52	2.120585e-49
MsG0180000366.01	MsG0180000489.01	0.805788	1.127315e-49	6.018091e-47
MsG0180000366.01	MsG0180000638.01	0.810591	1.068341e-50	6.466085e-48
MsG0180000366.01	MsG0180000670.01	0.815589	8.557377e-52	5.924417e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000366.01.T01	MTR_1g017160	81.955	266	8	1	1	266	1	226	5.87e-155	431
MsG0180000366.01.T01	MTR_1g034050	23.457	162	121	1	86	244	49	210	2.30e-14	70.9

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000366.01.T01	AT1G49510	28.125	128	92	116	243	88	215	3.21e-12	65.1
MsG0180000366.01.T01	AT1G49510	28.125	128	92	116	243	88	215	3.21e-12	65.1
MsG0180000366.01.T01	AT1G49510	28.125	128	92	116	243	30	157	3.24e-12	63.9

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Find 67 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATAGCGTCGACATCTTT+AGG	0.320026	1:+4972142	None:intergenic
AATACAAATCGGGATCATGA+AGG	0.594143	1:-4970664	MsG0180000366.01.T01:CDS
AATGAACACTCCTTCCGGTT+TGG	0.403905	1:-4970099	MsG0180000366.01.T01:CDS
AATGAAGTTAAAATACAAAT+CGG	0.400177	1:-4970675	MsG0180000366.01.T01:CDS
ACACCAACAAAGAGGCCAAC+GGG	0.464195	1:+4970453	None:intergenic
ACATGCAAAAGAAACACCCC+TGG	0.646921	1:+4970194	None:intergenic
ACATGGTTCACAACACAACC+AGG	0.508763	1:-4970212	MsG0180000366.01.T01:CDS
ACCCGAAACTTGGAAGTTGA+AGG	0.533653	1:+4972108	None:intergenic
ACTACATCTTCTTGCGCAAG+AGG	0.547287	1:-4970565	MsG0180000366.01.T01:CDS
AGAATTGTTTCATCAATCCG+AGG	0.652715	1:-4970397	MsG0180000366.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCACTTGCACATACAATA+AGG	+	Chr1:4971009-4971028	None:intergenic	30.0%
ATATTTATTGTATCTGCTCG+TGG	-	Chr1:4971641-4971660	MsG0180000366.01.T01:intron	30.0%
ATGAACAAGATGATTGAAAG+TGG	+	Chr1:4971995-4972014	None:intergenic	30.0%
ATTTAGCATGATTATCTTCG+TGG	-	Chr1:4970762-4970781	MsG0180000366.01.T01:CDS	30.0%
CATAGTCTGTACTATAATCA+AGG	+	Chr1:4970843-4970862	None:intergenic	30.0%
CGAGTATAAAATGTTTGACT+CGG	+	Chr1:4971219-4971238	None:intergenic	30.0%
TAACTTCATTAGGCTCATTA+TGG	+	Chr1:4971272-4971291	None:intergenic	30.0%
TACCACTTCAATTAAAGCAT+CGG	-	Chr1:4971239-4971258	MsG0180000366.01.T01:intron	30.0%
TATAGTGTAAGAAGTTGCAA+AGG	-	Chr1:4970572-4970591	MsG0180000366.01.T01:CDS	30.0%
TATTTATTCCCTTGTTCAAG+TGG	-	Chr1:4972027-4972046	MsG0180000366.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	4969774	4972205	4969774	ID=MsG0180000366.01;Name=MsG0180000366.01
Chr1	mRNA	4969774	4972205	4969774	ID=MsG0180000366.01.T01;Parent=MsG0180000366.01;Name=MsG0180000366.01.T01;_AED=0.27;_eAED=0.34;_QI=48\|0.5\|0.66\|1\|0.5\|0.33\|3\|305\|270
Chr1	exon	4972110	4972205	4972110	ID=MsG0180000366.01.T01:exon:9212;Parent=MsG0180000366.01.T01
Chr1	exon	4970398	4970940	4970398	ID=MsG0180000366.01.T01:exon:9213;Parent=MsG0180000366.01.T01
Chr1	exon	4969774	4970300	4969774	ID=MsG0180000366.01.T01:exon:9214;Parent=MsG0180000366.01.T01
Chr1	five_prime_UTR	4972158	4972205	4972158	ID=MsG0180000366.01.T01:five_prime_utr;Parent=MsG0180000366.01.T01
Chr1	CDS	4972110	4972157	4972110	ID=MsG0180000366.01.T01:cds;Parent=MsG0180000366.01.T01
Chr1	CDS	4970398	4970940	4970398	ID=MsG0180000366.01.T01:cds;Parent=MsG0180000366.01.T01
Chr1	CDS	4970079	4970300	4970079	ID=MsG0180000366.01.T01:cds;Parent=MsG0180000366.01.T01
Chr1	three_prime_UTR	4969774	4970078	4969774	ID=MsG0180000366.01.T01:three_prime_utr;Parent=MsG0180000366.01.T01

Gene Sequence

>MsG0180000366.01.T01

ATGTCGACGCTATCTTCTCTTGCAATTCCTTCAACTTCCAAGTTTCGGGTCCTACAATTTATGAATTATGTTATAACTTTAGATAGGATGGAATTGTTTGACTTATGCAATCTGGCACCATTCCAATGTTCGTTTATTTATAGCAATATCTTTCATTCTTTTGTGCAGGTTAATCCGTTTCGATGCCAACTCCGTCATTTCCGTAAATGCTCAGAAATTTATCTTCCGAGTCAAACATTTTATACTCGTACCACTTCAATTAAAGCATCGGTGGCAGACCATAATGAGCCTAATGAAGTTAAAATACAAATCGGGATCATGAAGGAGAAACTCAAAGAAGCATTACCAATCCCGGTTCAAGAATTTCCTTGGAGAAATGCTCAACATACACTTCTAGACCGACTACATCTTCTTGCGCAAGAGGCATTGAAGTGGTCTCTTGTTGTATATTTCATCTCTAGCTCTTTATCAGATGTTATATATACATTTTCTATAAATCGAGAATTAATCATTCCCGTTGGCCTCTTTGTTGGTGTCCTTGTGGCTGATTTCTTGAAGGAGATATCACTAGAATTGTTTCATCAATCCGAGGAGAATGATTTGAAATGGCGTCGTTTGGGCTTGTGTGGTATTTTCGTGTTGGTCAAGTTTATGTCGACATGGTTCACAACACAACCAGGGGTGTTTCTTTTGCATGTTGCAAATGGTGGACTGATGCAGTTACTTTGGTATTGGAGAAATTTTATGGAAGATGCTAAAATCAGACAGAAAATGAACACTCCTTCCGGTTTGGAGGCATCGATGGATAGTTGA

Protein sequence

>MsG0180000366.01.T01

MSTLSSLAIPSTSKFRVLQFMNYVITLDRMELFDLCNLAPFQCSFIYSNIFHSFVQVNPFRCQLRHFRKCSEIYLPSQTFYTRTTSIKASVADHNEPNEVKIQIGIMKEKLKEALPIPVQEFPWRNAQHTLLDRLHLLAQEALKWSLVVYFISSSLSDVIYTFSINRELIIPVGLFVGVLVADFLKEISLELFHQSEENDLKWRRLGLCGIFVLVKFMSTWFTTQPGVFLLHVANGGLMQLLWYWRNFMEDAKIRQKMNTPSGLEASMDS*