AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038986.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038986.01.T01 MTR_7g066120 98.054 411 7 1 1 410 1 411 0.0 820
MsG0780038986.01.T01 MTR_2g008030 50.733 341 151 2 71 410 11 335 3.04e-116 343
MsG0780038986.01.T01 MTR_6g035305 50.440 341 152 2 71 410 11 335 9.12e-115 339
MsG0780038986.01.T01 MTR_4g093620 45.697 337 161 8 73 408 70 385 2.73e-93 286
MsG0780038986.01.T01 MTR_0776s0010 36.158 354 205 6 56 403 273 611 1.01e-72 248
MsG0780038986.01.T01 MTR_3g070100 29.452 292 164 12 125 409 115 371 1.75e-19 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038986.01.T01 AT3G54050 82.741 394 61 3 21 410 27 417 0.0 659
MsG0780038986.01.T01 AT3G54050 82.741 394 61 3 21 410 27 417 0.0 659
MsG0780038986.01.T01 AT1G43670 48.974 341 157 2 71 410 11 335 1.31e-111 331
MsG0780038986.01.T01 AT5G64380 46.769 325 150 7 88 408 86 391 9.01e-91 280
MsG0780038986.01.T01 AT3G55800 29.730 333 178 16 89 409 90 378 1.79e-21 95.9

Find 102 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTATATGGTGGCATTTA+TGG 0.101447 7:+56428708 MsG0780038986.01.T01:CDS
CCAATATACCTTGCTGAATA+AGG 0.224762 7:-56428657 None:intergenic
ATGTAAACAGATTGCTTCTT+TGG 0.237903 7:+56427098 MsG0780038986.01.T01:CDS
GCTAATATTTCTAACCTTAC+TGG 0.275094 7:+56427129 MsG0780038986.01.T01:CDS
CCTTATTCAGCAAGGTATAT+TGG 0.303464 7:+56428657 MsG0780038986.01.T01:CDS
ATGAAGGGAATTACAAGTTA+TGG 0.331893 7:+56428577 MsG0780038986.01.T01:CDS
CATAGACGTGAGGGAGAATA+AGG 0.332492 7:-56426844 None:intergenic
GTTGTATTTGATCCACTTGA+TGG 0.344875 7:+56427704 MsG0780038986.01.T01:CDS
ATGTTCTATGAAACTTGTTA+TGG 0.349558 7:+56429490 MsG0780038986.01.T01:three_prime_UTR
AGCTTATAACATTGACTAGT+TGG 0.352602 7:+56427004 MsG0780038986.01.T01:CDS
GCTGCTAGAAGGTTGCTTCC+TGG 0.357718 7:-56428405 None:intergenic
CATGGATGGATTGTGTTCTA+AGG 0.361431 7:-56426724 None:intergenic
AATGAGTTTCATTGTAGAAC+AGG 0.377561 7:+56428791 MsG0780038986.01.T01:CDS
AGAGGATGTGCCGGTGGCGG+TGG 0.379522 7:+56427655 MsG0780038986.01.T01:CDS
GCGGTGGAGGAGAGTTATTC+AGG 0.379595 7:+56427671 MsG0780038986.01.T01:CDS
AATCTCCAAATACCGAAATC+AGG 0.381783 7:+56428537 MsG0780038986.01.T01:CDS
TCTAACCTTACTGGTGTTCA+AGG 0.382052 7:+56427138 MsG0780038986.01.T01:CDS
CTCAAGGAACCAGGTTCTAA+TGG 0.388835 7:+56428630 MsG0780038986.01.T01:CDS
AGAAAGCATGTGAGTGGCTC+TGG 0.395778 7:+56426919 MsG0780038986.01.T01:CDS
TTCCATAGGACACTGCTATA+TGG 0.397832 7:+56428696 MsG0780038986.01.T01:CDS
GTAATCTTTGTTCTAACAAT+CGG 0.407535 7:+56428453 MsG0780038986.01.T01:CDS
AAAATATATTCTTTCAATGA+AGG 0.413500 7:+56428561 MsG0780038986.01.T01:CDS
TCAGGAAGACACTCATCATT+GGG 0.419785 7:-56427782 None:intergenic
GTCAGGAAGACACTCATCAT+TGG 0.422599 7:-56427783 None:intergenic
TGAAGGGAATTACAAGTTAT+GGG 0.423627 7:+56428578 MsG0780038986.01.T01:CDS
TTGTTGAAGCAAGAACAAAC+AGG 0.433134 7:+56427027 MsG0780038986.01.T01:CDS
CAAGGTGCTGTAAATATTCA+AGG 0.437548 7:+56427156 MsG0780038986.01.T01:CDS
GGATGTGCCGGTGGCGGTGG+AGG 0.443495 7:+56427658 MsG0780038986.01.T01:CDS
CTGAAGGAAAAGAGATTGTA+AGG 0.445577 7:-56426699 None:intergenic
AGCAAGGTATATTGGTAGCT+TGG 0.445839 7:+56428665 MsG0780038986.01.T01:CDS
GTAGAACAGGCTGGTGGAAA+AGG 0.450058 7:+56428804 MsG0780038986.01.T01:CDS
TGCAGTAACCAGCTGCTAGA+AGG 0.454204 7:-56428416 None:intergenic
TCAAATTGTTTGAGGTCAAG+TGG 0.463529 7:+56427605 MsG0780038986.01.T01:CDS
TTCACATTAGATCCAATGTA+TGG 0.463537 7:+56428492 MsG0780038986.01.T01:CDS
TTTGCAATAGAGGAATGAAA+AGG 0.464757 7:-56429554 None:intergenic
TTGAGGTCAAGTGGGAGGAC+AGG 0.467538 7:+56427614 MsG0780038986.01.T01:CDS
GTAATGGTTTGTGATACTAT+TGG 0.468150 7:-56426673 None:intergenic
AGAGATTGTAAGGTTCGTAA+TGG 0.469758 7:-56426689 None:intergenic
CATTGGGAGCACAGAGGAAG+TGG 0.471616 7:+56429404 MsG0780038986.01.T01:CDS
AGGTATTCTCAAATTGTTTG+AGG 0.481726 7:+56427597 MsG0780038986.01.T01:intron
AACGTGTTCCACTGTACATT+GGG 0.482493 7:+56429388 MsG0780038986.01.T01:CDS
AGAGACAAGAAAAGTAAGAA+TGG 0.483894 7:+56428738 MsG0780038986.01.T01:CDS
TGTTCTACAATGAAACTCAT+TGG 0.490655 7:-56428789 None:intergenic
CTAGAAGGTTGCTTCCTGGT+TGG 0.494022 7:-56428401 None:intergenic
AGGTATATTGGTAGCTTGGT+AGG 0.502513 7:+56428669 MsG0780038986.01.T01:CDS
TCAGACTCATCACTGAGGTC+AGG 0.503913 7:-56427800 None:intergenic
GATAATAGCATCAGAGGAAG+AGG 0.504250 7:+56427637 MsG0780038986.01.T01:CDS
AAAGTAAGAATGGAAAGCTT+AGG 0.504829 7:+56428748 MsG0780038986.01.T01:CDS
GGAAGAGGATGTGCCGGTGG+CGG 0.506709 7:+56427652 MsG0780038986.01.T01:CDS
CAGCACCTTGAACACCAGTA+AGG 0.507446 7:-56427143 None:intergenic
TCGAAGACACAAAGTTGAAA+AGG 0.507827 7:-56426868 None:intergenic
AAATATATTCTTTCAATGAA+GGG 0.518944 7:+56428562 MsG0780038986.01.T01:CDS
TTGCAATAGAGGAATGAAAA+GGG 0.523785 7:-56429553 None:intergenic
CACCATATAGCAGTGTCCTA+TGG 0.526436 7:-56428698 None:intergenic
GGAAGCAACCTTCTAGCAGC+TGG 0.536054 7:+56428408 MsG0780038986.01.T01:CDS
CAACGTGTTCCACTGTACAT+TGG 0.541762 7:+56429387 MsG0780038986.01.T01:CDS
GCTTGGTAGGTGATTTCCAT+AGG 0.544076 7:+56428682 MsG0780038986.01.T01:CDS
CAAATTGTTTGAGGTCAAGT+GGG 0.545156 7:+56427606 MsG0780038986.01.T01:CDS
ATGATATGAAGAAGATAAGT+GGG 0.546728 7:+56426649 None:intergenic
TAAGGTTTGCCATTAGAACC+TGG 0.547362 7:-56428639 None:intergenic
AAAACAAATTCTCCATACAT+TGG 0.548772 7:-56428504 None:intergenic
AATGATATGAAGAAGATAAG+TGG 0.549360 7:+56426648 None:intergenic
ATCTCCAAATACCGAAATCA+GGG 0.551752 7:+56428538 MsG0780038986.01.T01:CDS
TAACTCTCCTCCACCGCCAC+CGG 0.552479 7:-56427665 None:intergenic
TGAGGTCAAGTGGGAGGACA+GGG 0.559786 7:+56427615 MsG0780038986.01.T01:CDS
ACTTGATGTTGTCTCAAATG+AGG 0.561343 7:+56427194 MsG0780038986.01.T01:CDS
ATCAGAGGAAGAGGATGTGC+CGG 0.561455 7:+56427646 MsG0780038986.01.T01:CDS
CATTCAACACTTACTTCGGT+GGG 0.565146 7:-56428861 None:intergenic
TCATTCAACACTTACTTCGG+TGG 0.568941 7:-56428862 None:intergenic
AGTTTCATTGTAGAACAGGC+TGG 0.569307 7:+56428795 MsG0780038986.01.T01:CDS
GACAGGGATAATAGCATCAG+AGG 0.573560 7:+56427631 MsG0780038986.01.T01:CDS
GCTGGTGGAAAAGGTTCAGA+TGG 0.579726 7:+56428813 MsG0780038986.01.T01:CDS
ATTGTGAATGTGTGCCAACC+AGG 0.580359 7:+56428387 MsG0780038986.01.T01:CDS
ATCGATGATCTCAAGGAACC+AGG 0.584338 7:+56428621 MsG0780038986.01.T01:CDS
ATATTTGATGAACCATCAAG+TGG 0.584623 7:-56427716 None:intergenic
TGGTGAATGAGTTGCATGGA+TGG 0.585150 7:-56426738 None:intergenic
ATTGATGCTGCAGTGTCCAC+TGG 0.587571 7:+56427737 MsG0780038986.01.T01:CDS
AAGGTGCTGTAAATATTCAA+GGG 0.588316 7:+56427157 MsG0780038986.01.T01:CDS
GAAATACATCGATGATCTCA+AGG 0.591810 7:+56428614 MsG0780038986.01.T01:CDS
CTCTGGAGGAGTGAGATGCA+TGG 0.594547 7:+56426936 MsG0780038986.01.T01:CDS
AAGCATGTGAGTGGCTCTGG+AGG 0.594581 7:+56426922 MsG0780038986.01.T01:CDS
TTTGTTCTAACAATCGGCAA+AGG 0.598066 7:+56428459 MsG0780038986.01.T01:CDS
ATTGTGTTCTAAGGTACTGA+AGG 0.600065 7:-56426715 None:intergenic
TTCATTGTAGAACAGGCTGG+TGG 0.611027 7:+56428798 MsG0780038986.01.T01:CDS
TTGCACTAGTGTGTTTCTAG+TGG 0.613499 7:-56426758 None:intergenic
TGTTGAAGCAAGAACAAACA+GGG 0.616718 7:+56427028 MsG0780038986.01.T01:CDS
TGAAAAGGACATAGACGTGA+GGG 0.625401 7:-56426853 None:intergenic
GGCTGTTGGTGAAGTAGCTG+CGG 0.625568 7:+56426957 MsG0780038986.01.T01:CDS
ATGGCAAACCTTATTCAGCA+AGG 0.633183 7:+56428649 MsG0780038986.01.T01:CDS
AGAGGAAGAGGATGTGCCGG+TGG 0.636345 7:+56427649 MsG0780038986.01.T01:CDS
TCAAGAAGAAAGCATGTGAG+TGG 0.640509 7:+56426913 MsG0780038986.01.T01:CDS
ATTGTTTGAGGTCAAGTGGG+AGG 0.641340 7:+56427609 MsG0780038986.01.T01:CDS
AGGTGCTGTAAATATTCAAG+GGG 0.646017 7:+56427158 MsG0780038986.01.T01:CDS
GGAGTGAGATGCATGGCTGT+TGG 0.653986 7:+56426943 MsG0780038986.01.T01:CDS
TCTGTGCTCCCAATGTACAG+TGG 0.654161 7:-56429396 None:intergenic
CATAGGACACTGCTATATGG+TGG 0.655058 7:+56428699 MsG0780038986.01.T01:CDS
CTAGTGGTGAATGAGTTGCA+TGG 0.667648 7:-56426742 None:intergenic
TTGAAAAGGACATAGACGTG+AGG 0.689156 7:-56426854 None:intergenic
CAGGAAGACACTCATCATTG+GGG 0.698773 7:-56427781 None:intergenic
GTTGAAGCAAGAACAAACAG+GGG 0.727918 7:+56427029 MsG0780038986.01.T01:CDS
ACTGTACATTGGGAGCACAG+AGG 0.776186 7:+56429398 MsG0780038986.01.T01:CDS
TGAGGTCAGACTCATCACTG+AGG 0.790814 7:-56427805 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATACAAAAAGTAAGAA+CGG - Chr7:56428191-56428210 None:intergenic 15.0%
!! AAAATATATTCTTTCAATGA+AGG + Chr7:56428561-56428580 MsG0780038986.01.T01:CDS 15.0%
!! AAATATATTCTTTCAATGAA+GGG + Chr7:56428562-56428581 MsG0780038986.01.T01:CDS 15.0%
!! AACCATGATAAAAATATAAA+TGG + Chr7:56429315-56429334 MsG0780038986.01.T01:intron 15.0%
!! TAAAAATATAAATGGTATGA+TGG + Chr7:56429323-56429342 MsG0780038986.01.T01:intron 15.0%
!!! TACCATTTATATTTTTATCA+TGG - Chr7:56429320-56429339 None:intergenic 15.0%
!!! TATTGTTTTCATTTATGATT+AGG + Chr7:56427851-56427870 MsG0780038986.01.T01:intron 15.0%
!! AAAATACAAAAAGTAAGAAC+GGG - Chr7:56428190-56428209 None:intergenic 20.0%
!! TAAATACTTAAAAGACTGTT+TGG - Chr7:56429104-56429123 None:intergenic 20.0%
!! TAATTAAGCACTTATAGTTT+AGG + Chr7:56428911-56428930 MsG0780038986.01.T01:intron 20.0%
!!! ATTTAATTAGTTTTGAACCA+GGG + Chr7:56427232-56427251 MsG0780038986.01.T01:intron 20.0%
!!! ATTTAATTTTCCCTTTTTTC+TGG + Chr7:56429354-56429373 MsG0780038986.01.T01:intron 20.0%
!!! TATTTAATTAGTTTTGAACC+AGG + Chr7:56427231-56427250 MsG0780038986.01.T01:intron 20.0%
!!! TTAAGTTGTTTATCTAAACA+AGG - Chr7:56428894-56428913 None:intergenic 20.0%
!!! TTGTTTTCTATTTTTTGTTC+AGG + Chr7:56427577-56427596 MsG0780038986.01.T01:intron 20.0%
! AAAACAAATTCTCCATACAT+TGG - Chr7:56428507-56428526 None:intergenic 25.0%
! AGTGCAAAATTCAACAAAAA+TGG + Chr7:56426774-56426793 MsG0780038986.01.T01:exon 25.0%
! ATGAATTGAAGCATATTATC+TGG - Chr7:56427452-56427471 None:intergenic 25.0%
! GTAATCTTTGTTCTAACAAT+CGG + Chr7:56428453-56428472 MsG0780038986.01.T01:CDS 25.0%
!! ATACCTTAATTTGGTTAAAC+AGG + Chr7:56428147-56428166 MsG0780038986.01.T01:intron 25.0%
!! GAATATATTTTCCCTGATTT+CGG - Chr7:56428552-56428571 None:intergenic 25.0%
!! TACCTTAATTTGGTTAAACA+GGG + Chr7:56428148-56428167 MsG0780038986.01.T01:intron 25.0%
!!! AAGTTATTTTGGAAAGGTTA+GGG + Chr7:56429026-56429045 MsG0780038986.01.T01:intron 25.0%
!!! ATGTTCTATGAAACTTGTTA+TGG + Chr7:56429490-56429509 MsG0780038986.01.T01:three_prime_UTR 25.0%
!!! TGTTTTGAATAGTATTTCGT+TGG + Chr7:56427074-56427093 MsG0780038986.01.T01:CDS 25.0%
!!! TTTCACAAGTTATTTTGGAA+AGG + Chr7:56429020-56429039 MsG0780038986.01.T01:intron 25.0%
AAAGTAAGAATGGAAAGCTT+AGG + Chr7:56428748-56428767 MsG0780038986.01.T01:CDS 30.0%
AAGTCATTCAACACTTACTT+CGG - Chr7:56428868-56428887 None:intergenic 30.0%
AATATCAATTATTCCAACCC+CGG - Chr7:56427326-56427345 None:intergenic 30.0%
AATGAGTTTCATTGTAGAAC+AGG + Chr7:56428791-56428810 MsG0780038986.01.T01:CDS 30.0%
AGAGACAAGAAAAGTAAGAA+TGG + Chr7:56428738-56428757 MsG0780038986.01.T01:CDS 30.0%
AGGTATTCTCAAATTGTTTG+AGG + Chr7:56427597-56427616 MsG0780038986.01.T01:intron 30.0%
ATAAGTGTGAATGAATCAAG+TGG + Chr7:56427965-56427984 MsG0780038986.01.T01:intron 30.0%
ATATTTGATGAACCATCAAG+TGG - Chr7:56427719-56427738 None:intergenic 30.0%
ATCATGGTTTAGTAGAAGAT+CGG - Chr7:56429304-56429323 None:intergenic 30.0%
ATGAAGGGAATTACAAGTTA+TGG + Chr7:56428577-56428596 MsG0780038986.01.T01:CDS 30.0%
ATGAATCTGTCCAGAAAAAA+GGG - Chr7:56429367-56429386 None:intergenic 30.0%
ATGTAAACAGATTGCTTCTT+TGG + Chr7:56427098-56427117 MsG0780038986.01.T01:CDS 30.0%
ATGTAACAGTCCAAAAATTG+TGG + Chr7:56429275-56429294 MsG0780038986.01.T01:intron 30.0%
ATTGAGACCTAAAAGTTTCA+TGG + Chr7:56427300-56427319 MsG0780038986.01.T01:intron 30.0%
CATATTATCTGGTCGTTATT+TGG - Chr7:56427441-56427460 None:intergenic 30.0%
TACATATGTAAATTGCAGCT+TGG + Chr7:56428345-56428364 MsG0780038986.01.T01:intron 30.0%
TATTGTGTTAAGCAATGCTT+TGG - Chr7:56428327-56428346 None:intergenic 30.0%
TGAAGGGAATTACAAGTTAT+GGG + Chr7:56428578-56428597 MsG0780038986.01.T01:CDS 30.0%
TGCGAAAACATTTATGCTAA+AGG + Chr7:56427504-56427523 MsG0780038986.01.T01:intron 30.0%
TGTTCTACAATGAAACTCAT+TGG - Chr7:56428792-56428811 None:intergenic 30.0%
TTATGATTAGGAATCGAACT+CGG + Chr7:56427863-56427882 MsG0780038986.01.T01:intron 30.0%
TTCAACAAAAATGGTTGCAA+TGG + Chr7:56426783-56426802 MsG0780038986.01.T01:exon 30.0%
TTCACATTAGATCCAATGTA+TGG + Chr7:56428492-56428511 MsG0780038986.01.T01:CDS 30.0%
TTGCAATAGAGGAATGAAAA+GGG - Chr7:56429556-56429575 None:intergenic 30.0%
TTTGCAATAGAGGAATGAAA+AGG - Chr7:56429557-56429576 None:intergenic 30.0%
! ACCTTAATTTGGTTAAACAG+GGG + Chr7:56428149-56428168 MsG0780038986.01.T01:intron 30.0%
! AGCTTATAACATTGACTAGT+TGG + Chr7:56427004-56427023 MsG0780038986.01.T01:CDS 30.0%
! ATGTTTTCGCAATTTGAACT+TGG - Chr7:56427495-56427514 None:intergenic 30.0%
! GCTAATATTTCTAACCTTAC+TGG + Chr7:56427129-56427148 MsG0780038986.01.T01:CDS 30.0%
! GTAATGGTTTGTGATACTAT+TGG - Chr7:56426676-56426695 None:intergenic 30.0%
! GTTATGGTCAAGTGATTTTA+AGG + Chr7:56429506-56429525 MsG0780038986.01.T01:three_prime_UTR 30.0%
!! AACCAAATTAAGGTATCGTT+GGG - Chr7:56428143-56428162 None:intergenic 30.0%
!! AAGGTGCTGTAAATATTCAA+GGG + Chr7:56427157-56427176 MsG0780038986.01.T01:CDS 30.0%
!! ATTTTTGGACTGTTACATCA+AGG - Chr7:56429273-56429292 None:intergenic 30.0%
!! GCTAGTTTCACAAGTTATTT+TGG + Chr7:56429015-56429034 MsG0780038986.01.T01:intron 30.0%
!! TAACCAAATTAAGGTATCGT+TGG - Chr7:56428144-56428163 None:intergenic 30.0%
!! TCTTACTTTTCTTGTCTCTA+GGG - Chr7:56428737-56428756 None:intergenic 30.0%
!! TTCTTACTTTTCTTGTCTCT+AGG - Chr7:56428738-56428757 None:intergenic 30.0%
!!! AGACAACATCAAGTTTTTTC+TGG - Chr7:56427188-56427207 None:intergenic 30.0%
!!! CAAGTTATTTTGGAAAGGTT+AGG + Chr7:56429025-56429044 MsG0780038986.01.T01:intron 30.0%
AACCATAGTTGAACTTGAAC+TGG - Chr7:56428245-56428264 None:intergenic 35.0%
AACTAGTTGAACCAACCTTT+AGG - Chr7:56428084-56428103 None:intergenic 35.0%
AATCCCAAAAATAGAACCAG+TGG - Chr7:56427756-56427775 None:intergenic 35.0%
AATCTCCAAATACCGAAATC+AGG + Chr7:56428537-56428556 MsG0780038986.01.T01:CDS 35.0%
ACCCCTGTTTAACCAAATTA+AGG - Chr7:56428153-56428172 None:intergenic 35.0%
ACTTGATGTTGTCTCAAATG+AGG + Chr7:56427194-56427213 MsG0780038986.01.T01:CDS 35.0%
AGAATCGTAGTTAAATGTGG+TGG + Chr7:56427350-56427369 MsG0780038986.01.T01:intron 35.0%
AGAGATTGTAAGGTTCGTAA+TGG - Chr7:56426692-56426711 None:intergenic 35.0%
ATCCCAACGATACCTTAATT+TGG + Chr7:56428138-56428157 MsG0780038986.01.T01:intron 35.0%
ATCTCCAAATACCGAAATCA+GGG + Chr7:56428538-56428557 MsG0780038986.01.T01:CDS 35.0%
CAACTTAGAAACCTAAAGGT+TGG + Chr7:56428070-56428089 MsG0780038986.01.T01:intron 35.0%
CAAGCAACTTAGAAACCTAA+AGG + Chr7:56428066-56428085 MsG0780038986.01.T01:intron 35.0%
CAGAGAATCGTAGTTAAATG+TGG + Chr7:56427347-56427366 MsG0780038986.01.T01:intron 35.0%
CCAATATACCTTGCTGAATA+AGG - Chr7:56428660-56428679 None:intergenic 35.0%
CCTTATTCAGCAAGGTATAT+TGG + Chr7:56428657-56428676 MsG0780038986.01.T01:CDS 35.0%
CTGAAGGAAAAGAGATTGTA+AGG - Chr7:56426702-56426721 None:intergenic 35.0%
GAAATACATCGATGATCTCA+AGG + Chr7:56428614-56428633 MsG0780038986.01.T01:CDS 35.0%
GATGAATCTGTCCAGAAAAA+AGG - Chr7:56429368-56429387 None:intergenic 35.0%
GTTGTATTTGATCCACTTGA+TGG + Chr7:56427704-56427723 MsG0780038986.01.T01:CDS 35.0%
TAAAGATCAAAACACGACCT+TGG - Chr7:56429191-56429210 None:intergenic 35.0%
TAACGTGTAAAAGACCTGTT+TGG - Chr7:56429156-56429175 None:intergenic 35.0%
TCGAAGACACAAAGTTGAAA+AGG - Chr7:56426871-56426890 None:intergenic 35.0%
TGTTGAAGCAAGAACAAACA+GGG + Chr7:56427028-56427047 MsG0780038986.01.T01:CDS 35.0%
TTGTTGAAGCAAGAACAAAC+AGG + Chr7:56427027-56427046 MsG0780038986.01.T01:CDS 35.0%
TTTGTTCTAACAATCGGCAA+AGG + Chr7:56428459-56428478 MsG0780038986.01.T01:CDS 35.0%
! AAAGGTTGGTTCAACTAGTT+GGG + Chr7:56428084-56428103 MsG0780038986.01.T01:intron 35.0%
! AGGTGCTGTAAATATTCAAG+GGG + Chr7:56427158-56427177 MsG0780038986.01.T01:CDS 35.0%
! CAAATTGTTTGAGGTCAAGT+GGG + Chr7:56427606-56427625 MsG0780038986.01.T01:CDS 35.0%
! GCTAAAGGAGTGTATTAGAA+GGG + Chr7:56427519-56427538 MsG0780038986.01.T01:intron 35.0%
! GGTCTTTTACACGTTACTAA+AGG + Chr7:56429160-56429179 MsG0780038986.01.T01:intron 35.0%
! GTATTAGAAGGGTTTTCTCT+TGG + Chr7:56427530-56427549 MsG0780038986.01.T01:intron 35.0%
! TAAAGGTTGGTTCAACTAGT+TGG + Chr7:56428083-56428102 MsG0780038986.01.T01:intron 35.0%
! TCAAATTGTTTGAGGTCAAG+TGG + Chr7:56427605-56427624 MsG0780038986.01.T01:CDS 35.0%
! TGCTAAAGGAGTGTATTAGA+AGG + Chr7:56427518-56427537 MsG0780038986.01.T01:intron 35.0%
! TTCCAGTTCAAGTTCAACTA+TGG + Chr7:56428240-56428259 MsG0780038986.01.T01:intron 35.0%
! TTTTCCCTGATTTCGGTATT+TGG - Chr7:56428545-56428564 None:intergenic 35.0%
!! ATTGTGTTCTAAGGTACTGA+AGG - Chr7:56426718-56426737 None:intergenic 35.0%
!! CAAGGTGCTGTAAATATTCA+AGG + Chr7:56427156-56427175 MsG0780038986.01.T01:CDS 35.0%
!!! GTGCTTTTTCTTTGCAATAG+AGG - Chr7:56429567-56429586 None:intergenic 35.0%
!!! TGTCCACTGGTTCTATTTTT+GGG + Chr7:56427750-56427769 MsG0780038986.01.T01:CDS 35.0%
AACGTGTTCCACTGTACATT+GGG + Chr7:56429388-56429407 MsG0780038986.01.T01:CDS 40.0%
AGACCTAAAAGTTTCATGGC+CGG + Chr7:56427304-56427323 MsG0780038986.01.T01:intron 40.0%
AGGAATCGAACTCGGTAATT+TGG + Chr7:56427871-56427890 MsG0780038986.01.T01:intron 40.0%
AGTTTCATTGTAGAACAGGC+TGG + Chr7:56428795-56428814 MsG0780038986.01.T01:CDS 40.0%
ATGGCAAACCTTATTCAGCA+AGG + Chr7:56428649-56428668 MsG0780038986.01.T01:CDS 40.0%
CATTCAACACTTACTTCGGT+GGG - Chr7:56428864-56428883 None:intergenic 40.0%
CTGCTATATGGTGGCATTTA+TGG + Chr7:56428708-56428727 MsG0780038986.01.T01:CDS 40.0%
CTTTCCGATCATGGTTCAAT+CGG - Chr7:56428271-56428290 None:intergenic 40.0%
GACCTCTTTCTCTTAGAAAC+CGG + Chr7:56427274-56427293 MsG0780038986.01.T01:intron 40.0%
GATAATAGCATCAGAGGAAG+AGG + Chr7:56427637-56427656 MsG0780038986.01.T01:CDS 40.0%
GTAAACGAATCTACGTCTTC+AGG - Chr7:56427903-56427922 None:intergenic 40.0%
GTTGAAGCAAGAACAAACAG+GGG + Chr7:56427029-56427048 MsG0780038986.01.T01:CDS 40.0%
TAAGGTTTGCCATTAGAACC+TGG - Chr7:56428642-56428661 None:intergenic 40.0%
TCAAATAAGCCAGTCCAAAC+AGG + Chr7:56429139-56429158 MsG0780038986.01.T01:intron 40.0%
TCAGGAAGACACTCATCATT+GGG - Chr7:56427785-56427804 None:intergenic 40.0%
TCATTCAACACTTACTTCGG+TGG - Chr7:56428865-56428884 None:intergenic 40.0%
TCTAACCTTACTGGTGTTCA+AGG + Chr7:56427138-56427157 MsG0780038986.01.T01:CDS 40.0%
TGAAAAGGACATAGACGTGA+GGG - Chr7:56426856-56426875 None:intergenic 40.0%
TGAACCGATTGAACCATGAT+CGG + Chr7:56428264-56428283 MsG0780038986.01.T01:intron 40.0%
TGTAAAAGACCTGTTTGGAC+TGG - Chr7:56429151-56429170 None:intergenic 40.0%
TGTTAAGCAATGCTTTGGTC+TGG - Chr7:56428322-56428341 None:intergenic 40.0%
TTCCATAGGACACTGCTATA+TGG + Chr7:56428696-56428715 MsG0780038986.01.T01:CDS 40.0%
TTGAAAAGGACATAGACGTG+AGG - Chr7:56426857-56426876 None:intergenic 40.0%
! AGCAAGGTATATTGGTAGCT+TGG + Chr7:56428665-56428684 MsG0780038986.01.T01:CDS 40.0%
! AGGTATATTGGTAGCTTGGT+AGG + Chr7:56428669-56428688 MsG0780038986.01.T01:CDS 40.0%
! CGAAGTATTCACTTACTGTG+AGG - Chr7:56427826-56427845 None:intergenic 40.0%
! TCAAGAAGAAAGCATGTGAG+TGG + Chr7:56426913-56426932 MsG0780038986.01.T01:CDS 40.0%
!! ACTTTTAGGTCTCAATCCTC+CGG - Chr7:56427296-56427315 None:intergenic 40.0%
!! CATGGATGGATTGTGTTCTA+AGG - Chr7:56426727-56426746 None:intergenic 40.0%
!! TTGCACTAGTGTGTTTCTAG+TGG - Chr7:56426761-56426780 None:intergenic 40.0%
!!! GTGTCCACTGGTTCTATTTT+TGG + Chr7:56427749-56427768 MsG0780038986.01.T01:CDS 40.0%
ACCTAAAAGTTTCATGGCCG+GGG + Chr7:56427306-56427325 MsG0780038986.01.T01:intron 45.0%
ATCAAAACACGACCTTGGCA+TGG - Chr7:56429186-56429205 None:intergenic 45.0%
ATCGATGATCTCAAGGAACC+AGG + Chr7:56428621-56428640 MsG0780038986.01.T01:CDS 45.0%
ATTGTGAATGTGTGCCAACC+AGG + Chr7:56428387-56428406 MsG0780038986.01.T01:CDS 45.0%
CAACGTGTTCCACTGTACAT+TGG + Chr7:56429387-56429406 MsG0780038986.01.T01:CDS 45.0%
CACCATATAGCAGTGTCCTA+TGG - Chr7:56428701-56428720 None:intergenic 45.0%
CAGGAAGACACTCATCATTG+GGG - Chr7:56427784-56427803 None:intergenic 45.0%
CATAGACGTGAGGGAGAATA+AGG - Chr7:56426847-56426866 None:intergenic 45.0%
CATAGGACACTGCTATATGG+TGG + Chr7:56428699-56428718 MsG0780038986.01.T01:CDS 45.0%
CTAGTGGTGAATGAGTTGCA+TGG - Chr7:56426745-56426764 None:intergenic 45.0%
CTCTTTCTCTTAGAAACCGG+AGG + Chr7:56427277-56427296 MsG0780038986.01.T01:intron 45.0%
GACAGGGATAATAGCATCAG+AGG + Chr7:56427631-56427650 MsG0780038986.01.T01:CDS 45.0%
GACCTAAAAGTTTCATGGCC+GGG + Chr7:56427305-56427324 MsG0780038986.01.T01:intron 45.0%
GAGCAGGCAAGTTTATCGAT+TGG + Chr7:56428111-56428130 MsG0780038986.01.T01:intron 45.0%
GATCGGAAAGTCTCACCAAT+TGG + Chr7:56428281-56428300 MsG0780038986.01.T01:intron 45.0%
GCAATGCTTTGGTCTGGTAT+CGG - Chr7:56428316-56428335 None:intergenic 45.0%
GCTTGGTAGGTGATTTCCAT+AGG + Chr7:56428682-56428701 MsG0780038986.01.T01:CDS 45.0%
GGTTAAACAGGGGTCACAAT+TGG + Chr7:56428159-56428178 MsG0780038986.01.T01:intron 45.0%
GTCAGGAAGACACTCATCAT+TGG - Chr7:56427786-56427805 None:intergenic 45.0%
TCGAACTCGGTAATTTGGAG+TGG + Chr7:56427876-56427895 MsG0780038986.01.T01:intron 45.0%
TCGATAAACTTGCCTGCTCT+CGG - Chr7:56428110-56428129 None:intergenic 45.0%
TGGTGAATGAGTTGCATGGA+TGG - Chr7:56426741-56426760 None:intergenic 45.0%
TTCATTGTAGAACAGGCTGG+TGG + Chr7:56428798-56428817 MsG0780038986.01.T01:CDS 45.0%
TTGGTGAGACTTTCCGATCA+TGG - Chr7:56428280-56428299 None:intergenic 45.0%
! AGATCGGCAGCCACAATTTT+TGG - Chr7:56429288-56429307 None:intergenic 45.0%
! ATTGTTTGAGGTCAAGTGGG+AGG + Chr7:56427609-56427628 MsG0780038986.01.T01:CDS 45.0%
! CGAACTCGGTAATTTGGAGT+GGG + Chr7:56427877-56427896 MsG0780038986.01.T01:intron 45.0%
! CTCAAGGAACCAGGTTCTAA+TGG + Chr7:56428630-56428649 MsG0780038986.01.T01:CDS 45.0%
! CTCCGGTTTCTAAGAGAAAG+AGG - Chr7:56427279-56427298 None:intergenic 45.0%
AAAAGTTTCATGGCCGGGGT+TGG + Chr7:56427310-56427329 MsG0780038986.01.T01:intron 50.0%
AGTAATCCAGAGTTCGACCC+TGG - Chr7:56427252-56427271 None:intergenic 50.0%
AGTCTCACCAATTGGACCTC+CGG + Chr7:56428289-56428308 MsG0780038986.01.T01:intron 50.0%
ATCAGAGGAAGAGGATGTGC+CGG + Chr7:56427646-56427665 MsG0780038986.01.T01:CDS 50.0%
ATTGATGCTGCAGTGTCCAC+TGG + Chr7:56427737-56427756 MsG0780038986.01.T01:CDS 50.0%
CAGCACCTTGAACACCAGTA+AGG - Chr7:56427146-56427165 None:intergenic 50.0%
CGTTACTAAAGGCCATGCCA+AGG + Chr7:56429171-56429190 MsG0780038986.01.T01:intron 50.0%
CTAGAAGGTTGCTTCCTGGT+TGG - Chr7:56428404-56428423 None:intergenic 50.0%
GCTGGTGGAAAAGGTTCAGA+TGG + Chr7:56428813-56428832 MsG0780038986.01.T01:CDS 50.0%
GTAGAACAGGCTGGTGGAAA+AGG + Chr7:56428804-56428823 MsG0780038986.01.T01:CDS 50.0%
TCAGACTCATCACTGAGGTC+AGG - Chr7:56427803-56427822 None:intergenic 50.0%
TCTGTGCTCCCAATGTACAG+TGG - Chr7:56429399-56429418 None:intergenic 50.0%
TGAGGTCAGACTCATCACTG+AGG - Chr7:56427808-56427827 None:intergenic 50.0%
TGCAGTAACCAGCTGCTAGA+AGG - Chr7:56428419-56428438 None:intergenic 50.0%
TTTGAACCAGGGTCGAACTC+TGG + Chr7:56427243-56427262 MsG0780038986.01.T01:intron 50.0%
! ACCCCGGCCATGAAACTTTT+AGG - Chr7:56427310-56427329 None:intergenic 50.0%
! ACTGTACATTGGGAGCACAG+AGG + Chr7:56429398-56429417 MsG0780038986.01.T01:CDS 50.0%
! AGAAAGCATGTGAGTGGCTC+TGG + Chr7:56426919-56426938 MsG0780038986.01.T01:CDS 50.0%
GCGGTGGAGGAGAGTTATTC+AGG + Chr7:56427671-56427690 MsG0780038986.01.T01:CDS 55.0%
GCTGCTAGAAGGTTGCTTCC+TGG - Chr7:56428408-56428427 None:intergenic 55.0%
GGAAGCAACCTTCTAGCAGC+TGG + Chr7:56428408-56428427 MsG0780038986.01.T01:CDS 55.0%
GGAGTGAGATGCATGGCTGT+TGG + Chr7:56426943-56426962 MsG0780038986.01.T01:CDS 55.0%
TATCGGACCGGAGGTCCAAT+TGG - Chr7:56428299-56428318 None:intergenic 55.0%
TGAGGTCAAGTGGGAGGACA+GGG + Chr7:56427615-56427634 MsG0780038986.01.T01:CDS 55.0%
TTGAGGTCAAGTGGGAGGAC+AGG + Chr7:56427614-56427633 MsG0780038986.01.T01:CDS 55.0%
! CATTGGGAGCACAGAGGAAG+TGG + Chr7:56429404-56429423 MsG0780038986.01.T01:CDS 55.0%
! CTCTGGAGGAGTGAGATGCA+TGG + Chr7:56426936-56426955 MsG0780038986.01.T01:CDS 55.0%
! GCTTTGGTCTGGTATCGGAC+CGG - Chr7:56428311-56428330 None:intergenic 55.0%
! GGCTGTTGGTGAAGTAGCTG+CGG + Chr7:56426957-56426976 MsG0780038986.01.T01:CDS 55.0%
!! AAGCATGTGAGTGGCTCTGG+AGG + Chr7:56426922-56426941 MsG0780038986.01.T01:CDS 55.0%
AGAGGAAGAGGATGTGCCGG+TGG + Chr7:56427649-56427668 MsG0780038986.01.T01:CDS 60.0%
CAACTAGTTGGGCCGAGAGC+AGG + Chr7:56428095-56428114 MsG0780038986.01.T01:intron 60.0%
TAACTCTCCTCCACCGCCAC+CGG - Chr7:56427668-56427687 None:intergenic 60.0%
! TTGGTCTGGTATCGGACCGG+AGG - Chr7:56428308-56428327 None:intergenic 60.0%
! GGAAGAGGATGTGCCGGTGG+CGG + Chr7:56427652-56427671 MsG0780038986.01.T01:CDS 65.0%
! AGAGGATGTGCCGGTGGCGG+TGG + Chr7:56427655-56427674 MsG0780038986.01.T01:CDS 70.0%
! GGATGTGCCGGTGGCGGTGG+AGG + Chr7:56427658-56427677 MsG0780038986.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 56426656 56429658 56426656 ID=MsG0780038986.01;Name=MsG0780038986.01
Chr7 mRNA 56426656 56429658 56426656 ID=MsG0780038986.01.T01;Parent=MsG0780038986.01;Name=MsG0780038986.01.T01;_AED=0.25;_eAED=0.25;_QI=137|1|1|1|1|1|4|206|410
Chr7 exon 56426656 56427215 56426656 ID=MsG0780038986.01.T01:exon:6391;Parent=MsG0780038986.01.T01
Chr7 exon 56427599 56427829 56427599 ID=MsG0780038986.01.T01:exon:6392;Parent=MsG0780038986.01.T01
Chr7 exon 56428363 56428869 56428363 ID=MsG0780038986.01.T01:exon:6393;Parent=MsG0780038986.01.T01
Chr7 exon 56429381 56429658 56429381 ID=MsG0780038986.01.T01:exon:6394;Parent=MsG0780038986.01.T01
Chr7 five_prime_UTR 56426656 56426792 56426656 ID=MsG0780038986.01.T01:five_prime_utr;Parent=MsG0780038986.01.T01
Chr7 CDS 56426793 56427215 56426793 ID=MsG0780038986.01.T01:cds;Parent=MsG0780038986.01.T01
Chr7 CDS 56427599 56427829 56427599 ID=MsG0780038986.01.T01:cds;Parent=MsG0780038986.01.T01
Chr7 CDS 56428363 56428869 56428363 ID=MsG0780038986.01.T01:cds;Parent=MsG0780038986.01.T01
Chr7 CDS 56429381 56429452 56429381 ID=MsG0780038986.01.T01:cds;Parent=MsG0780038986.01.T01
Chr7 three_prime_UTR 56429453 56429658 56429453 ID=MsG0780038986.01.T01:three_prime_utr;Parent=MsG0780038986.01.T01
Gene Sequence

>MsG0780038986.01.T01

ATGGTTGCAATGGCAGCAGCAACAGCATCATCACAGTTAATATTCTCAAAACCTTATTCTCCCTCACGTCTATGTCCTTTTCAACTTTGTGTCTTCGACACGAAATCTGTGTTATCAAGTTCAAGAAGAAAGCATGTGAGTGGCTCTGGAGGAGTGAGATGCATGGCTGTTGGTGAAGTAGCTGCGGAGACGAAGAAAAGAAGTAGTTATGAGCTTATAACATTGACTAGTTGGTTGTTGAAGCAAGAACAAACAGGGGTTATTGATGCTGAACTTACTATTGTTTTGAATAGTATTTCGTTGGCATGTAAACAGATTGCTTCTTTGGTTCAAAGAGCTAATATTTCTAACCTTACTGGTGTTCAAGGTGCTGTAAATATTCAAGGGGAAGACCAGAAAAAACTTGATGTTGTCTCAAATGAGGTATTCTCAAATTGTTTGAGGTCAAGTGGGAGGACAGGGATAATAGCATCAGAGGAAGAGGATGTGCCGGTGGCGGTGGAGGAGAGTTATTCAGGAAACTACATTGTTGTATTTGATCCACTTGATGGTTCATCAAATATTGATGCTGCAGTGTCCACTGGTTCTATTTTTGGGATTTACAGCCCCAATGATGAGTGTCTTCCTGACCTCAGTGATGAGTCTGACCTCACACTTGGCACAGAAGAACAAAGATGCATTGTGAATGTGTGCCAACCAGGAAGCAACCTTCTAGCAGCTGGTTACTGCATGTATTCTAGCTCAGTAATCTTTGTTCTAACAATCGGCAAAGGAGTGTTTGTATTCACATTAGATCCAATGTATGGAGAATTTGTTTTGACTCAAGAAAATCTCCAAATACCGAAATCAGGGAAAATATATTCTTTCAATGAAGGGAATTACAAGTTATGGGATGATAACTTGAAGAAATACATCGATGATCTCAAGGAACCAGGTTCTAATGGCAAACCTTATTCAGCAAGGTATATTGGTAGCTTGGTAGGTGATTTCCATAGGACACTGCTATATGGTGGCATTTATGGTTACCCTAGAGACAAGAAAAGTAAGAATGGAAAGCTTAGGCTTTTATATGAGTGTGCTCCAATGAGTTTCATTGTAGAACAGGCTGGTGGAAAAGGTTCAGATGGTCATCAGAGAGTACTTGACATTCAACCCACCGAAATTCATCAACGTGTTCCACTGTACATTGGGAGCACAGAGGAAGTGGAGAAAGTTGAAAAGTACTTAGCTTAA

Protein sequence

>MsG0780038986.01.T01

MVAMAAATASSQLIFSKPYSPSRLCPFQLCVFDTKSVLSSSRRKHVSGSGGVRCMAVGEVAAETKKRSSYELITLTSWLLKQEQTGVIDAELTIVLNSISLACKQIASLVQRANISNLTGVQGAVNIQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPNDECLPDLSDESDLTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSVIFVLTIGKGVFVFTLDPMYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDDNLKKYIDDLKEPGSNGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDKKSKNGKLRLLYECAPMSFIVEQAGGKGSDGHQRVLDIQPTEIHQRVPLYIGSTEEVEKVEKYLA*