Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0400000 | XP_013459167.1 | 96.438 | 365 | 13 | 0 | 1 | 365 | 1 | 365 | 0.0 | 713 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0400000 | A0A072V4V0 | 96.438 | 365 | 13 | 0 | 1 | 365 | 1 | 365 | 0.0 | 713 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008040 | Msa0400000 | 0.801068 | 1.072158e-48 | -8.615850e-47 |
| Msa0016040 | Msa0400000 | 0.816973 | 4.196350e-52 | -8.615850e-47 |
| Msa0019930 | Msa0400000 | 0.808951 | 2.406346e-50 | -8.615850e-47 |
| Msa0025160 | Msa0400000 | 0.834518 | 2.862396e-56 | -8.615850e-47 |
| Msa0025580 | Msa0400000 | 0.810751 | 9.865563e-51 | -8.615850e-47 |
| Msa0027280 | Msa0400000 | 0.840579 | 7.985543e-58 | -8.615850e-47 |
| Msa0034210 | Msa0400000 | 0.820732 | 5.870734e-53 | -8.615850e-47 |
| Msa0035140 | Msa0400000 | 0.814152 | 1.781492e-51 | -8.615850e-47 |
| Msa0048510 | Msa0400000 | 0.810837 | 9.452554e-51 | -8.615850e-47 |
| Msa0049760 | Msa0400000 | 0.819519 | 1.113015e-52 | -8.615850e-47 |
| Msa0050660 | Msa0400000 | 0.831105 | 2.015147e-55 | -8.615850e-47 |
| Msa0050700 | Msa0400000 | 0.828473 | 8.816420e-55 | -8.615850e-47 |
| Msa0050790 | Msa0400000 | 0.816992 | 4.155339e-52 | -8.615850e-47 |
| Msa0054690 | Msa0400000 | 0.806757 | 7.045945e-50 | -8.615850e-47 |
| Msa0062340 | Msa0400000 | 0.808357 | 3.223493e-50 | -8.615850e-47 |
| Msa0068150 | Msa0400000 | 0.801354 | 9.368719e-49 | -8.615850e-47 |
| Msa0072520 | Msa0400000 | 0.808958 | 2.398164e-50 | -8.615850e-47 |
| Msa0077560 | Msa0400000 | 0.824297 | 8.713636e-54 | -8.615850e-47 |
| Msa0093860 | Msa0400000 | 0.806017 | 1.008861e-49 | -8.615850e-47 |
| Msa0094790 | Msa0400000 | 0.806054 | 9.907892e-50 | -8.615850e-47 |
| Msa0121330 | Msa0400000 | 0.812993 | 3.204455e-51 | -8.615850e-47 |
| Msa0122330 | Msa0400000 | 0.826754 | 2.280450e-54 | -8.615850e-47 |
| Msa0123070 | Msa0400000 | 0.806484 | 8.045227e-50 | -8.615850e-47 |
| Msa0128310 | Msa0400000 | 0.815413 | 9.364073e-52 | -8.615850e-47 |
| Msa0133150 | Msa0400000 | 0.823640 | 1.242588e-53 | -8.615850e-47 |
| Msa0140380 | Msa0400000 | 0.836701 | 8.019605e-57 | -8.615850e-47 |
| Msa0149350 | Msa0400000 | 0.812049 | 5.155194e-51 | -8.615850e-47 |
| Msa0161930 | Msa0400000 | 0.822399 | 2.419113e-53 | -8.615850e-47 |
| Msa0174440 | Msa0400000 | 0.823859 | 1.103918e-53 | -8.615850e-47 |
| Msa0190570 | Msa0400000 | 0.810066 | 1.386512e-50 | -8.615850e-47 |
| Msa0200050 | Msa0400000 | 0.860141 | 2.539479e-63 | -8.615850e-47 |
| Msa0232760 | Msa0400000 | 0.801443 | 8.982014e-49 | -8.615850e-47 |
| Msa0233020 | Msa0400000 | 0.812926 | 3.314623e-51 | -8.615850e-47 |
| Msa0367520 | Msa0400000 | 0.815852 | 7.474501e-52 | -8.615850e-47 |
| Msa0380670 | Msa0400000 | 0.810541 | 1.095096e-50 | -8.615850e-47 |
| Msa0383000 | Msa0400000 | 0.843993 | 9.956292e-59 | -8.615850e-47 |
| Msa0400000 | Msa0422050 | 0.808461 | 3.061951e-50 | -8.615850e-47 |
| Msa0400000 | Msa0430300 | 0.816745 | 4.721160e-52 | -8.615850e-47 |
| Msa0400000 | Msa0432010 | 0.859318 | 4.494602e-63 | -8.615850e-47 |
| Msa0400000 | Msa0433150 | 0.847971 | 8.250437e-60 | -8.615850e-47 |
| Msa0400000 | Msa0447750 | 0.836414 | 9.491418e-57 | -8.615850e-47 |
| Msa0400000 | Msa0481890 | 0.830360 | 3.068030e-55 | -8.615850e-47 |
| Msa0400000 | Msa0495550 | 0.827070 | 1.916250e-54 | -8.615850e-47 |
| Msa0400000 | Msa0513080 | 0.801597 | 8.352816e-49 | -8.615850e-47 |
| Msa0400000 | Msa0520870 | 0.843288 | 1.536641e-58 | -8.615850e-47 |
| Msa0400000 | Msa0524520 | 0.832657 | 8.340894e-56 | -8.615850e-47 |
| Msa0400000 | Msa0528570 | 0.837489 | 5.043021e-57 | -8.615850e-47 |
| Msa0400000 | Msa0531960 | 0.853180 | 2.833200e-61 | -8.615850e-47 |
| Msa0400000 | Msa0548470 | 0.806896 | 6.582794e-50 | -8.615850e-47 |
| Msa0400000 | Msa0557460 | 0.801088 | 1.061680e-48 | -8.615850e-47 |
| Msa0400000 | Msa0563740 | 0.800077 | 1.706855e-48 | -8.615850e-47 |
| Msa0400000 | Msa0571620 | 0.819614 | 1.058941e-52 | -8.615850e-47 |
| Msa0400000 | Msa0580810 | 0.805802 | 1.119706e-49 | -8.615850e-47 |
| Msa0400000 | Msa0588920 | 0.813230 | 2.843226e-51 | -8.615850e-47 |
| Msa0400000 | Msa0607800 | 0.813394 | 2.616600e-51 | -8.615850e-47 |
| Msa0400000 | Msa0613630 | 0.812844 | 3.456211e-51 | -8.615850e-47 |
| Msa0400000 | Msa0621710 | 0.851551 | 8.247115e-61 | -8.615850e-47 |
| Msa0400000 | Msa0657700 | 0.818404 | 1.995130e-52 | -8.615850e-47 |
| Msa0400000 | Msa0661150 | 0.821702 | 3.508769e-53 | -8.615850e-47 |
| Msa0400000 | Msa0666700 | 0.852251 | 5.217510e-61 | -8.615850e-47 |
| Msa0400000 | Msa0682770 | 0.814310 | 1.644328e-51 | -8.615850e-47 |
| Msa0400000 | Msa0702810 | 0.808035 | 3.773420e-50 | -8.615850e-47 |
| Msa0400000 | Msa0709440 | 0.831302 | 1.803037e-55 | -8.615850e-47 |
| Msa0400000 | Msa0714520 | 0.830202 | 3.353052e-55 | -8.615850e-47 |
| Msa0400000 | Msa0722220 | 0.849991 | 2.265740e-60 | -8.615850e-47 |
| Msa0400000 | Msa0735780 | 0.858903 | 5.984835e-63 | -8.615850e-47 |
| Msa0400000 | Msa0737990 | 0.807238 | 5.573688e-50 | -8.615850e-47 |
| Msa0400000 | Msa0738700 | 0.810564 | 1.082418e-50 | -8.615850e-47 |
| Msa0400000 | Msa0743440 | 0.807842 | 4.147959e-50 | -8.615850e-47 |
| Msa0400000 | Msa0758650 | 0.833078 | 6.555533e-56 | -8.615850e-47 |
| Msa0400000 | Msa0761670 | 0.875273 | 3.508533e-68 | -8.615850e-47 |
| Msa0400000 | Msa0773630 | 0.807801 | 4.233118e-50 | -8.615850e-47 |
| Msa0400000 | Msa0773670 | 0.803631 | 3.179765e-49 | -8.615850e-47 |
| Msa0400000 | Msa0780910 | 0.821621 | 3.663898e-53 | -8.615850e-47 |
| Msa0400000 | Msa0805680 | 0.806644 | 7.443812e-50 | -8.615850e-47 |
| Msa0400000 | Msa0811020 | 0.811083 | 8.358817e-51 | -8.615850e-47 |
| Msa0400000 | Msa0821160 | 0.822094 | 2.846256e-53 | -8.615850e-47 |
| Msa0400000 | Msa0824450 | 0.811366 | 7.257563e-51 | -8.615850e-47 |
| Msa0400000 | Msa0828970 | 0.811886 | 5.595326e-51 | -8.615850e-47 |
| Msa0400000 | Msa0835350 | 0.806490 | 8.021037e-50 | -8.615850e-47 |
| Msa0400000 | Msa0843050 | 0.813041 | 3.128316e-51 | -8.615850e-47 |
| Msa0400000 | Msa0859290 | 0.820708 | 5.945348e-53 | -8.615850e-47 |
| Msa0400000 | Msa0863620 | 0.808775 | 2.624476e-50 | -8.615850e-47 |
| Msa0400000 | Msa0867110 | 0.801572 | 8.452898e-49 | -8.615850e-47 |
| Msa0400000 | Msa0879920 | 0.800470 | 1.419466e-48 | -8.615850e-47 |
| Msa0400000 | Msa0888790 | 0.831342 | 1.762236e-55 | -8.615850e-47 |
| Msa0400000 | Msa0909760 | 0.809373 | 1.954378e-50 | -8.615850e-47 |
| Msa0400000 | Msa0915520 | 0.840120 | 1.052834e-57 | -8.615850e-47 |
| Msa0400000 | Msa0924430 | 0.813938 | 1.986888e-51 | -8.615850e-47 |
| Msa0400000 | Msa0931590 | 0.838773 | 2.356959e-57 | -8.615850e-47 |
| Msa0400000 | Msa1008170 | 0.801311 | 9.561322e-49 | -8.615850e-47 |
| Msa0400000 | Msa1029530 | 0.817645 | 2.961858e-52 | -8.615850e-47 |
| Msa0400000 | Msa1035220 | 0.841290 | 5.198301e-58 | -8.615850e-47 |
| Msa0400000 | Msa1035570 | 0.836248 | 1.045890e-56 | -8.615850e-47 |
| Msa0400000 | Msa1035610 | 0.842791 | 2.083290e-58 | -8.615850e-47 |
| Msa0400000 | Msa1037540 | 0.800020 | 1.753290e-48 | -8.615850e-47 |
| Msa0400000 | Msa1042190 | 0.805128 | 1.550380e-49 | -8.615850e-47 |
| Msa0400000 | Msa1059020 | 0.837343 | 5.497824e-57 | -8.615850e-47 |
| Msa0400000 | Msa1081390 | 0.876582 | 1.244992e-68 | -8.615850e-47 |
| Msa0400000 | Msa1082200 | 0.841447 | 4.725179e-58 | -8.615850e-47 |
| Msa0400000 | Msa1084530 | 0.832393 | 9.699657e-56 | -8.615850e-47 |
| Msa0400000 | Msa1090140 | 0.804919 | 1.714086e-49 | -8.615850e-47 |
| Msa0400000 | Msa1092420 | 0.804331 | 2.273749e-49 | -8.615850e-47 |
| Msa0400000 | Msa1104220 | 0.825427 | 4.716237e-54 | -8.615850e-47 |
| Msa0400000 | Msa1116190 | 0.811884 | 5.599156e-51 | -8.615850e-47 |
| Msa0400000 | Msa1116220 | 0.881189 | 2.951290e-70 | -8.615850e-47 |
| Msa0400000 | Msa1116660 | 0.825711 | 4.038567e-54 | -8.615850e-47 |
| Msa0400000 | Msa1125820 | 0.842690 | 2.216444e-58 | -8.615850e-47 |
| Msa0400000 | Msa1125990 | 0.839696 | 1.357997e-57 | -8.615850e-47 |
| Msa0400000 | Msa1132530 | 0.815938 | 7.151499e-52 | -8.615850e-47 |
| Msa0400000 | Msa1147910 | 0.811220 | 7.805723e-51 | -8.615850e-47 |
| Msa0400000 | Msa1162180 | 0.809395 | 1.933171e-50 | -8.615850e-47 |
| Msa0400000 | Msa1162590 | 0.812357 | 4.415008e-51 | -8.615850e-47 |
| Msa0400000 | Msa1162880 | 0.814046 | 1.880573e-51 | -8.615850e-47 |
| Msa0400000 | Msa1171290 | 0.827284 | 1.703020e-54 | -8.615850e-47 |
| Msa0400000 | Msa1192560 | 0.801069 | 1.071323e-48 | -8.615850e-47 |
| Msa0400000 | Msa1192590 | 0.802778 | 4.774109e-49 | -8.615850e-47 |
| Msa0400000 | Msa1215870 | 0.822440 | 2.366678e-53 | -8.615850e-47 |
| Msa0400000 | Msa1223390 | 0.816025 | 6.840323e-52 | -8.615850e-47 |
| Msa0400000 | Msa1226520 | 0.800245 | 1.577390e-48 | -8.615850e-47 |
| Msa0400000 | Msa1244240 | 0.806899 | 6.573167e-50 | -8.615850e-47 |
| Msa0400000 | Msa1254540 | 0.846862 | 1.663724e-59 | -8.615850e-47 |
| Msa0400000 | Msa1261050 | 0.806723 | 7.163429e-50 | -8.615850e-47 |
| Msa0400000 | Msa1263740 | 0.803274 | 3.769332e-49 | -8.615850e-47 |
| Msa0400000 | Msa1263780 | 0.828786 | 7.407115e-55 | -8.615850e-47 |
| Msa0400000 | Msa1268630 | 0.811414 | 7.083808e-51 | -8.615850e-47 |
| Msa0400000 | Msa1294460 | 0.805592 | 1.239485e-49 | -8.615850e-47 |
| Msa0400000 | Msa1300460 | 0.813553 | 2.415263e-51 | -8.615850e-47 |
| Msa0400000 | Msa1306790 | 0.800818 | 1.205938e-48 | -8.615850e-47 |
| Msa0400000 | Msa1332950 | 0.810321 | 1.221406e-50 | -8.615850e-47 |
| Msa0400000 | Msa1343170 | 0.832986 | 6.912207e-56 | -8.615850e-47 |
| Msa0400000 | Msa1343180 | 0.834785 | 2.451183e-56 | -8.615850e-47 |
| Msa0400000 | Msa1359690 | 0.809952 | 1.467449e-50 | -8.615850e-47 |
| Msa0400000 | Msa1364410 | 0.826978 | 2.015842e-54 | -8.615850e-47 |
| Msa0400000 | Msa1368750 | 0.857983 | 1.124797e-62 | -8.615850e-47 |
| Msa0400000 | Msa1372040 | 0.816043 | 6.778603e-52 | -8.615850e-47 |
| Msa0400000 | Msa1374790 | 0.864097 | 1.553732e-64 | -8.615850e-47 |
| Msa0400000 | Msa1380120 | 0.814181 | 1.755724e-51 | -8.615850e-47 |
| Msa0400000 | Msa1400010 | 0.804870 | 1.754930e-49 | -8.615850e-47 |
| Msa0400000 | Msa1409410 | 0.835772 | 1.381424e-56 | -8.615850e-47 |
| Msa0400000 | Msa1415540 | 0.838537 | 2.711487e-57 | -8.615850e-47 |
| Msa0400000 | Msa1438830 | 0.821635 | 3.636582e-53 | -8.615850e-47 |
| Msa0400000 | Msa1440630 | 0.816481 | 5.407864e-52 | -8.615850e-47 |
| Msa0400000 | Msa1450190 | 0.854654 | 1.065673e-61 | -8.615850e-47 |
| Msa0400000 | Msa1451820 | 0.865271 | 6.663547e-65 | -8.615850e-47 |
| Msa0400000 | Msa1452140 | 0.824019 | 1.012371e-53 | -8.615850e-47 |
| Msa0242590 | Msa0400000 | 0.804572 | 2.026029e-49 | -8.615850e-47 |
| Msa0272260 | Msa0400000 | 0.824612 | 7.347003e-54 | -8.615850e-47 |
| Msa0298470 | Msa0400000 | 0.829373 | 5.338635e-55 | -8.615850e-47 |
| Msa0340500 | Msa0400000 | 0.809239 | 2.088004e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0400000 | MtrunA17_Chr3g0088311 | 96.164 | 365 | 13 | 1 | 1 | 365 | 1 | 364 | 0.0 | 707 |
| Msa0400000 | MtrunA17_Chr7g0257991 | 34.559 | 272 | 134 | 8 | 1 | 246 | 1 | 254 | 2.29e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0400000 | AT3G52110.2 | 42.742 | 372 | 161 | 13 | 1 | 361 | 1 | 331 | 1.03e-71 | 227 |
| Msa0400000 | AT3G52110.1 | 39.750 | 400 | 161 | 13 | 1 | 361 | 1 | 359 | 6.35e-68 | 218 |
| Msa0400000 | AT3G52110.3 | 42.262 | 336 | 125 | 11 | 1 | 297 | 1 | 306 | 1.10e-61 | 201 |
| Msa0400000 | AT3G52110.4 | 43.793 | 290 | 123 | 9 | 1 | 280 | 1 | 260 | 2.66e-58 | 190 |
Find 83 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAACCAAAATCCGAATT+TGG | 0.214237 | 3_2:+23827583 | Msa0400000:CDS |
| GATACAAGTACCTTCTATTT+TGG | 0.216703 | 3_2:-23827381 | None:intergenic |
| GAGTAACCAAATTCGGATTT+TGG | 0.233277 | 3_2:-23827589 | None:intergenic |
| GATTCTCATTGAAATTAAAC+TGG | 0.271733 | 3_2:+23829313 | Msa0400000:exon |
| TTGGATGGGATGTGTGTTAA+AGG | 0.276726 | 3_2:+23827968 | Msa0400000:CDS |
| TGAATCTGAATTTATCATCT+TGG | 0.317982 | 3_2:-23827550 | None:intergenic |
| CAAAAGCCTTGGACATGTTC+TGG | 0.319084 | 3_2:+23829259 | Msa0400000:CDS |
| TGACTTGATCAAAGCCTTCA+TGG | 0.329487 | 3_2:-23827624 | None:intergenic |
| CAGATCACCAAGTCCTTTCA+AGG | 0.337664 | 3_2:+23826946 | Msa0400000:CDS |
| AATTGAGGAGTAACCAAATT+CGG | 0.341390 | 3_2:-23827596 | None:intergenic |
| AAGGAAACCATTGCTTGAAA+TGG | 0.343999 | 3_2:+23827931 | Msa0400000:CDS |
| GAATCTGAATTTATCATCTT+GGG | 0.347711 | 3_2:-23827549 | None:intergenic |
| TCTTCTTCTTTACTCTCTAC+AGG | 0.348257 | 3_2:-23827839 | None:intergenic |
| TTCTCCAAGTCAAGAGTTAT+AGG | 0.377448 | 3_2:-23828612 | None:intergenic |
| CTGCAATGAATTGAAGAGAT+TGG | 0.379870 | 3_2:+23827775 | Msa0400000:CDS |
| GTTTCAGATTCTTATGTCAT+TGG | 0.386999 | 3_2:-23829461 | None:intergenic |
| AGCTTCATCATCATTGTTGT+TGG | 0.398451 | 3_2:-23826479 | None:intergenic |
| AGGTTCCAGATCCCGGCTAA+TGG | 0.435543 | 3_2:+23828734 | Msa0400000:CDS |
| ACATACCATTAGCCGGGATC+TGG | 0.436592 | 3_2:-23828739 | None:intergenic |
| TCTGTGATTTGATTCAGAAT+AGG | 0.438456 | 3_2:-23827749 | None:intergenic |
| CTCTTGACTTGGAGAATGTA+AGG | 0.438576 | 3_2:+23828619 | Msa0400000:CDS |
| TGGATAGAAGAGAGAAAGAA+AGG | 0.449130 | 3_2:+23827912 | Msa0400000:CDS |
| AGGAAACCATTGCTTGAAAT+GGG | 0.454113 | 3_2:+23827932 | Msa0400000:CDS |
| GAAAGAGTTGATTTCAATGA+AGG | 0.454599 | 3_2:-23827701 | None:intergenic |
| TTGAAAACCTTGAAAGGACT+TGG | 0.458556 | 3_2:-23826953 | None:intergenic |
| CTTCTCTCCAGTGTGATCAA+TGG | 0.458736 | 3_2:+23826345 | Msa0400000:exon |
| CTATTTATATATTGTACTCA+TGG | 0.462884 | 3_2:+23829386 | Msa0400000:three_prime_UTR |
| CTTCTTCTTTACTCTCTACA+GGG | 0.471523 | 3_2:-23827838 | None:intergenic |
| CAAGCGCCGACCAAAATAGA+AGG | 0.472103 | 3_2:+23827371 | Msa0400000:CDS |
| CATGCCTATAACTCTTGACT+TGG | 0.473248 | 3_2:+23828608 | Msa0400000:CDS |
| GCCTTACCCATTTCAAGCAA+TGG | 0.476077 | 3_2:-23827938 | None:intergenic |
| AGACAAGAAGTCAACAAACT+TGG | 0.476808 | 3_2:-23826443 | None:intergenic |
| GACCTCGCCGGTGAACGCTT+TGG | 0.485298 | 3_2:+23827883 | Msa0400000:CDS |
| CCTCAAAAGGTTCCAGATCC+CGG | 0.489613 | 3_2:+23828727 | Msa0400000:CDS |
| TGGATGGGATGTGTGTTAAA+GGG | 0.490645 | 3_2:+23827969 | Msa0400000:CDS |
| TCCTCAATTTAAGTCCATGA+AGG | 0.499647 | 3_2:+23827610 | Msa0400000:CDS |
| GCCTTCATGGACTTAAATTG+AGG | 0.505521 | 3_2:-23827611 | None:intergenic |
| GGTGAACGCTTTGGCAGAGT+TGG | 0.511955 | 3_2:+23827892 | Msa0400000:CDS |
| AACTCTGCCAAAGCGTTCAC+CGG | 0.518508 | 3_2:-23827890 | None:intergenic |
| AATGGGTAAGGCTGAAAGGT+TGG | 0.518631 | 3_2:+23827949 | Msa0400000:CDS |
| TGGAACCCGCGAAAATCGAT+TGG | 0.518768 | 3_2:+23826365 | Msa0400000:CDS |
| CAAGAATTGAAAACCTTGAA+AGG | 0.521962 | 3_2:-23826959 | None:intergenic |
| GGTAAGGCTGAAAGGTTGGA+TGG | 0.525835 | 3_2:+23827953 | Msa0400000:CDS |
| TTGGGGAGAAGATGATGAAA+GGG | 0.527318 | 3_2:-23827531 | None:intergenic |
| AGGAAGAGAAACAAAAGCCT+TGG | 0.531913 | 3_2:+23829248 | Msa0400000:CDS |
| ACCATTGCTTGAAATGGGTA+AGG | 0.532730 | 3_2:+23827937 | Msa0400000:CDS |
| TGTAGAGAGTAAAGAAGAAG+AGG | 0.537526 | 3_2:+23827841 | Msa0400000:CDS |
| TGGAGAATGTAAGGCAAAAG+AGG | 0.545027 | 3_2:+23828628 | Msa0400000:CDS |
| ACAACAATGATGATGAAGCT+TGG | 0.550311 | 3_2:+23826482 | Msa0400000:CDS |
| GAGATGGGAAAATCAAGAGA+AGG | 0.552016 | 3_2:+23827501 | Msa0400000:intron |
| GGTTGGGACATACCATTAGC+CGG | 0.552393 | 3_2:-23828746 | None:intergenic |
| CTTGGGGAGAAGATGATGAA+AGG | 0.552832 | 3_2:-23827532 | None:intergenic |
| AATCTGAATTTATCATCTTG+GGG | 0.559370 | 3_2:-23827548 | None:intergenic |
| AAAAGTATTACAATCTCTGA+AGG | 0.570300 | 3_2:+23829228 | Msa0400000:CDS |
| CAGCTTGATAATGTTGTGCA+AGG | 0.574727 | 3_2:-23829291 | None:intergenic |
| AGAGATTGGCATTAAGAGCA+AGG | 0.574808 | 3_2:+23827789 | Msa0400000:CDS |
| GACAAGAAGTCAACAAACTT+GGG | 0.580519 | 3_2:-23826442 | None:intergenic |
| GTTGGGACATACCATTAGCC+GGG | 0.583044 | 3_2:-23828745 | None:intergenic |
| GCGGGTTCCATTGATCACAC+TGG | 0.585492 | 3_2:-23826352 | None:intergenic |
| GAGATTGGCATTAAGAGCAA+GGG | 0.590054 | 3_2:+23827790 | Msa0400000:CDS |
| CAACAAACTTGGGTGCGTTG+AGG | 0.603580 | 3_2:-23826432 | None:intergenic |
| ACACTGGAGAGAAGAGAGAG+AGG | 0.609882 | 3_2:-23826336 | None:intergenic |
| ATTCTCATTGAAATTAAACT+GGG | 0.610494 | 3_2:+23829314 | Msa0400000:exon |
| CACTGGAGAGAAGAGAGAGA+GGG | 0.610648 | 3_2:-23826335 | None:intergenic |
| TGACACATTGCAAGACAGTA+CGG | 0.610797 | 3_2:+23827673 | Msa0400000:CDS |
| GCAAAACAAGGAAGTTGCAA+AGG | 0.614584 | 3_2:+23829185 | Msa0400000:CDS |
| AGATGGGAAAATCAAGAGAA+GGG | 0.615803 | 3_2:+23827502 | Msa0400000:CDS |
| TTGAAATGGGTAAGGCTGAA+AGG | 0.620447 | 3_2:+23827945 | Msa0400000:CDS |
| GTAAGGCTGAAAGGTTGGAT+GGG | 0.622635 | 3_2:+23827954 | Msa0400000:CDS |
| AGGCTTATCATGCAGGAGAG+AGG | 0.623771 | 3_2:+23829144 | Msa0400000:intron |
| TGCCAAAGCGTTCACCGGCG+AGG | 0.627171 | 3_2:-23827885 | None:intergenic |
| TTACATCACGTAACTCATAA+CGG | 0.631304 | 3_2:+23826235 | Msa0400000:five_prime_UTR |
| GGAGAATGTAAGGCAAAAGA+GGG | 0.637079 | 3_2:+23828629 | Msa0400000:CDS |
| TTATGAGTTACGTGATGTAA+CGG | 0.638825 | 3_2:-23826232 | None:intergenic |
| TGGGGAGAAGATGATGAAAG+GGG | 0.644916 | 3_2:-23827530 | None:intergenic |
| TAAAGAAGTTGAGCAAAACA+AGG | 0.647922 | 3_2:+23829173 | Msa0400000:CDS |
| GAAGAACCAGAACATGTCCA+AGG | 0.652026 | 3_2:-23829265 | None:intergenic |
| GAGTTACGTGATGTAACGGA+GGG | 0.661477 | 3_2:-23826228 | None:intergenic |
| TGAGTTACGTGATGTAACGG+AGG | 0.681674 | 3_2:-23826229 | None:intergenic |
| GGAGAAGATGATGAAAGGGG+TGG | 0.706516 | 3_2:-23827527 | None:intergenic |
| TGTGCACGAGAAGACCTCGC+CGG | 0.712375 | 3_2:+23827871 | Msa0400000:CDS |
| ATTGTGCAGAAGACCTGATG+AGG | 0.747642 | 3_2:+23828578 | Msa0400000:intron |
| CACATTGCAAGACAGTACGG+AGG | 0.751329 | 3_2:+23827676 | Msa0400000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTTTGATTTTTATTAA+TGG | + | chr3_2:23826595-23826614 | Msa0400000:intron | 10.0% |
| !!! | AAGTTTTGATTTTTATTAAT+GGG | + | chr3_2:23826596-23826615 | Msa0400000:intron | 10.0% |
| !! | TATGAATAATTTAATGTTAT+AGG | - | chr3_2:23828770-23828789 | None:intergenic | 10.0% |
| !! | CATTAAATTATTCATATTTA+TGG | + | chr3_2:23828774-23828793 | Msa0400000:intron | 10.0% |
| !!! | AAAGTTTGGTTTTTTATTAA+TGG | + | chr3_2:23826677-23826696 | Msa0400000:intron | 15.0% |
| !!! | AAGTTTGGTTTTTTATTAAT+GGG | + | chr3_2:23826678-23826697 | Msa0400000:intron | 15.0% |
| !!! | AAAGTTTGGATTTTAATTAA+TGG | + | chr3_2:23826847-23826866 | Msa0400000:intron | 15.0% |
| !!! | AAGTTTGGATTTTAATTAAT+GGG | + | chr3_2:23826848-23826867 | Msa0400000:intron | 15.0% |
| !! | ATGATTAACAAAATTAGAAA+TGG | - | chr3_2:23826986-23827005 | None:intergenic | 15.0% |
| !!! | CTTTCTATTAATTTTTGTTT+TGG | + | chr3_2:23827296-23827315 | Msa0400000:intron | 15.0% |
| !!! | AGATTTTCTGATAAATAAAA+TGG | - | chr3_2:23827349-23827368 | None:intergenic | 15.0% |
| !!! | TTTAATATTTCTATAGAGAT+GGG | + | chr3_2:23827486-23827505 | Msa0400000:intron | 15.0% |
| !! | ATAATTTAATGTTATAGGTT+GGG | - | chr3_2:23828765-23828784 | None:intergenic | 15.0% |
| !! | AATAATTTAATGTTATAGGT+TGG | - | chr3_2:23828766-23828785 | None:intergenic | 15.0% |
| !!! | ACAATTTATTGACAAATTTT+AGG | - | chr3_2:23829515-23829534 | None:intergenic | 15.0% |
| !!! | TAGATTGCATTTTTCTTAAT+TGG | + | chr3_2:23826817-23826836 | Msa0400000:intron | 20.0% |
| !!! | AGATTGCATTTTTCTTAATT+GGG | + | chr3_2:23826818-23826837 | Msa0400000:intron | 20.0% |
| !!! | CTTAGTTATTTTATAGCTTA+TGG | + | chr3_2:23827115-23827134 | Msa0400000:intron | 20.0% |
| !!! | GTTTAATATTTCTATAGAGA+TGG | + | chr3_2:23827485-23827504 | Msa0400000:intron | 20.0% |
| !! | AGTGAAACATTACAAATATT+TGG | + | chr3_2:23828406-23828425 | Msa0400000:intron | 20.0% |
| !! | GCATAACTTATACAAATTAT+TGG | + | chr3_2:23828434-23828453 | Msa0400000:intron | 20.0% |
| !!! | TTATCTTTTTATAACTTCAG+TGG | + | chr3_2:23828462-23828481 | Msa0400000:intron | 20.0% |
| !! | TATACAAAAATGATTAACCA+AGG | - | chr3_2:23828550-23828569 | None:intergenic | 20.0% |
| !! | AATATATTGCTCTCTTAATA+TGG | - | chr3_2:23828925-23828944 | None:intergenic | 20.0% |
| !! | TAAATAGTTTCAGATTAATC+TGG | - | chr3_2:23828999-23829018 | None:intergenic | 20.0% |
| !! | AAACTATTTAATGTGTCAAT+TGG | + | chr3_2:23829009-23829028 | Msa0400000:intron | 20.0% |
| !! | ATTCTCATTGAAATTAAACT+GGG | + | chr3_2:23829314-23829333 | Msa0400000:exon | 20.0% |
| !! | CTATTTATATATTGTACTCA+TGG | + | chr3_2:23829386-23829405 | Msa0400000:three_prime_UTR | 20.0% |
| !! | AGATTGCATTTTTCTCAATT+AGG | + | chr3_2:23826566-23826585 | Msa0400000:intron | 25.0% |
| !! | AGATTGCATTTTTCTCAATT+AGG | + | chr3_2:23826566-23826585 | Msa0400000:intron | 25.0% |
| !!! | CAATTAGGTTTGTTAAAGTT+TGG | + | chr3_2:23826581-23826600 | Msa0400000:intron | 25.0% |
| !!! | TAATTGGGTTTGTTAAAGTT+TGG | + | chr3_2:23826833-23826852 | Msa0400000:intron | 25.0% |
| ! | ATAGTTTGAGCTTCTAATTA+TGG | + | chr3_2:23827004-23827023 | Msa0400000:intron | 25.0% |
| !! | AATTATGGTGTTAATTTAGC+TGG | + | chr3_2:23827019-23827038 | Msa0400000:intron | 25.0% |
| !!! | ATAGTTCTGAGCTTTATTTA+TGG | + | chr3_2:23827086-23827105 | Msa0400000:intron | 25.0% |
| !!! | TTGGTTTTTTCCTTTTTTGA+AGG | + | chr3_2:23827315-23827334 | Msa0400000:intron | 25.0% |
| ! | AATCTGAATTTATCATCTTG+GGG | - | chr3_2:23827551-23827570 | None:intergenic | 25.0% |
| ! | GAATCTGAATTTATCATCTT+GGG | - | chr3_2:23827552-23827571 | None:intergenic | 25.0% |
| ! | TGAATCTGAATTTATCATCT+TGG | - | chr3_2:23827553-23827572 | None:intergenic | 25.0% |
| ! | ATAAAGAAACACAGATTACA+AGG | - | chr3_2:23828026-23828045 | None:intergenic | 25.0% |
| ! | TTCAAATTTCACATCTAACT+TGG | - | chr3_2:23828386-23828405 | None:intergenic | 25.0% |
| ! | TGTAGATACAACTAAATCAA+AGG | - | chr3_2:23828494-23828513 | None:intergenic | 25.0% |
| !! | ATGGATTATTTACAAGACAA+TGG | + | chr3_2:23828793-23828812 | Msa0400000:intron | 25.0% |
| ! | ATCTATCAATGAATCTCTTT+AGG | - | chr3_2:23828872-23828891 | None:intergenic | 25.0% |
| !!! | AAAAGTATTACAATCTCTGA+AGG | + | chr3_2:23829228-23829247 | Msa0400000:CDS | 25.0% |
| ! | GATTCTCATTGAAATTAAAC+TGG | + | chr3_2:23829313-23829332 | Msa0400000:exon | 25.0% |
| TTATGAGTTACGTGATGTAA+CGG | - | chr3_2:23826235-23826254 | None:intergenic | 30.0% | |
| TTACATCACGTAACTCATAA+CGG | + | chr3_2:23826235-23826254 | Msa0400000:five_prime_UTR | 30.0% | |
| !! | ATTTTTCCAATCGATTTTCG+CGG | - | chr3_2:23826374-23826393 | None:intergenic | 30.0% |
| TCGATTGGAAAAATCTAGAA+TGG | + | chr3_2:23826380-23826399 | Msa0400000:CDS | 30.0% | |
| CAAGAATTGAAAACCTTGAA+AGG | - | chr3_2:23826962-23826981 | None:intergenic | 30.0% | |
| !! | TTTATTTTCCCCAATTTAGC+TGG | + | chr3_2:23827058-23827077 | Msa0400000:intron | 30.0% |
| TAGAAAGCAACATAGAGAAA+GGG | - | chr3_2:23827208-23827227 | None:intergenic | 30.0% | |
| ATAGAAAGCAACATAGAGAA+AGG | - | chr3_2:23827209-23827228 | None:intergenic | 30.0% | |
| TTGTTCTCAGTTTCTAACTT+TGG | + | chr3_2:23827240-23827259 | Msa0400000:intron | 30.0% | |
| ! | GATACAAGTACCTTCTATTT+TGG | - | chr3_2:23827384-23827403 | None:intergenic | 30.0% |
| ! | ATACACTTTCCTTTTTCCAT+AGG | + | chr3_2:23827415-23827434 | Msa0400000:intron | 30.0% |
| TCTCAAATTCCTATGGAAAA+AGG | - | chr3_2:23827427-23827446 | None:intergenic | 30.0% | |
| AGCAAAATCTCAAATTCCTA+TGG | - | chr3_2:23827434-23827453 | None:intergenic | 30.0% | |
| TGAAAACCAAAATCCGAATT+TGG | + | chr3_2:23827583-23827602 | Msa0400000:CDS | 30.0% | |
| AATTGAGGAGTAACCAAATT+CGG | - | chr3_2:23827599-23827618 | None:intergenic | 30.0% | |
| ! | GAAAGAGTTGATTTCAATGA+AGG | - | chr3_2:23827704-23827723 | None:intergenic | 30.0% |
| TCTGTGATTTGATTCAGAAT+AGG | - | chr3_2:23827752-23827771 | None:intergenic | 30.0% | |
| CAAGGAAATAGTACAAGAAT+TGG | - | chr3_2:23828532-23828551 | None:intergenic | 30.0% | |
| CAATTCTTGTACTATTTCCT+TGG | + | chr3_2:23828530-23828549 | Msa0400000:intron | 30.0% | |
| GATTTCATGAACTGACATTA+AGG | + | chr3_2:23828889-23828908 | Msa0400000:intron | 30.0% | |
| TTTAATGTGTCAATTGGAAG+AGG | + | chr3_2:23829015-23829034 | Msa0400000:intron | 30.0% | |
| ! | CATTACTACTTCTCTAAAGA+GGG | - | chr3_2:23829101-23829120 | None:intergenic | 30.0% |
| ! | ACATTACTACTTCTCTAAAG+AGG | - | chr3_2:23829102-23829121 | None:intergenic | 30.0% |
| ! | TAAAAAGAGATCTGATGATG+AGG | + | chr3_2:23829124-23829143 | Msa0400000:intron | 30.0% |
| TAAAGAAGTTGAGCAAAACA+AGG | + | chr3_2:23829173-23829192 | Msa0400000:CDS | 30.0% | |
| !!! | GGAGCAAAACTGTTTTATTT+AGG | + | chr3_2:23829407-23829426 | Msa0400000:three_prime_UTR | 30.0% |
| GTTTCAGATTCTTATGTCAT+TGG | - | chr3_2:23829464-23829483 | None:intergenic | 30.0% | |
| !!! | ACAAATTTTAGGTTCAGTAC+AGG | - | chr3_2:23829504-23829523 | None:intergenic | 30.0% |
| !! | TTTTTCCAATCGATTTTCGC+GGG | - | chr3_2:23826373-23826392 | None:intergenic | 35.0% |
| GACAAGAAGTCAACAAACTT+GGG | - | chr3_2:23826445-23826464 | None:intergenic | 35.0% | |
| AGACAAGAAGTCAACAAACT+TGG | - | chr3_2:23826446-23826465 | None:intergenic | 35.0% | |
| AGCTTCATCATCATTGTTGT+TGG | - | chr3_2:23826482-23826501 | None:intergenic | 35.0% | |
| ! | ACAACAATGATGATGAAGCT+TGG | + | chr3_2:23826482-23826501 | Msa0400000:CDS | 35.0% |
| !!! | GAAAATCCTCTGCTGTTTTT+GGG | - | chr3_2:23826925-23826944 | None:intergenic | 35.0% |
| !!! | AGAAAATCCTCTGCTGTTTT+TGG | - | chr3_2:23826926-23826945 | None:intergenic | 35.0% |
| TTGAAAACCTTGAAAGGACT+TGG | - | chr3_2:23826956-23826975 | None:intergenic | 35.0% | |
| TATGAACACCAGCTAAATTG+GGG | - | chr3_2:23827069-23827088 | None:intergenic | 35.0% | |
| CTATGAACACCAGCTAAATT+GGG | - | chr3_2:23827070-23827089 | None:intergenic | 35.0% | |
| ACTATGAACACCAGCTAAAT+TGG | - | chr3_2:23827071-23827090 | None:intergenic | 35.0% | |
| !! | CTATGTTGCTTTCTATGCTT+AGG | + | chr3_2:23827213-23827232 | Msa0400000:intron | 35.0% |
| !!! | CAAGTACCTTCTATTTTGGT+CGG | - | chr3_2:23827380-23827399 | None:intergenic | 35.0% |
| AGATGGGAAAATCAAGAGAA+GGG | + | chr3_2:23827502-23827521 | Msa0400000:CDS | 35.0% | |
| ! | GAGTAACCAAATTCGGATTT+TGG | - | chr3_2:23827592-23827611 | None:intergenic | 35.0% |
| TCCTCAATTTAAGTCCATGA+AGG | + | chr3_2:23827610-23827629 | Msa0400000:CDS | 35.0% | |
| !! | CGAAGAATTTGTTTTCGAGA+CGG | + | chr3_2:23827726-23827745 | Msa0400000:CDS | 35.0% |
| CTGCAATGAATTGAAGAGAT+TGG | + | chr3_2:23827775-23827794 | Msa0400000:CDS | 35.0% | |
| CTTCTTCTTTACTCTCTACA+GGG | - | chr3_2:23827841-23827860 | None:intergenic | 35.0% | |
| TCTTCTTCTTTACTCTCTAC+AGG | - | chr3_2:23827842-23827861 | None:intergenic | 35.0% | |
| TGTAGAGAGTAAAGAAGAAG+AGG | + | chr3_2:23827841-23827860 | Msa0400000:CDS | 35.0% | |
| TGGATAGAAGAGAGAAAGAA+AGG | + | chr3_2:23827912-23827931 | Msa0400000:CDS | 35.0% | |
| AAGGAAACCATTGCTTGAAA+TGG | + | chr3_2:23827931-23827950 | Msa0400000:CDS | 35.0% | |
| AGGAAACCATTGCTTGAAAT+GGG | + | chr3_2:23827932-23827951 | Msa0400000:CDS | 35.0% | |
| TTTACGATCCAAATCGATGT+AGG | + | chr3_2:23828124-23828143 | Msa0400000:intron | 35.0% | |
| AAGTGATTGAATGTAACCAC+CGG | - | chr3_2:23828262-23828281 | None:intergenic | 35.0% | |
| ! | GTTTTATAGGTTGCTAAGGT+AGG | + | chr3_2:23828350-23828369 | Msa0400000:intron | 35.0% |
| ! | AGTACAAGAATTGGAGTACT+GGG | - | chr3_2:23828523-23828542 | None:intergenic | 35.0% |
| TAGTACAAGAATTGGAGTAC+TGG | - | chr3_2:23828524-23828543 | None:intergenic | 35.0% | |
| TTCTCCAAGTCAAGAGTTAT+AGG | - | chr3_2:23828615-23828634 | None:intergenic | 35.0% | |
| !! | TCCGAATTTTAAGTCACGAT+CGG | + | chr3_2:23828948-23828967 | Msa0400000:intron | 35.0% |
| ACCACGTTTAATCTTGAATG+AGG | + | chr3_2:23829044-23829063 | Msa0400000:intron | 35.0% | |
| TCCTCATTCAAGATTAAACG+TGG | - | chr3_2:23829048-23829067 | None:intergenic | 35.0% | |
| !! | ATACTTTTGTTGCTTAGTGC+TGG | - | chr3_2:23829216-23829235 | None:intergenic | 35.0% |
| ! | ACCTGGTCAGTTTTCTCAAT+TGG | + | chr3_2:23826513-23826532 | Msa0400000:intron | 40.0% |
| ! | CCTGGTCAGTTTTCTCAATT+GGG | + | chr3_2:23826514-23826533 | Msa0400000:intron | 40.0% |
| GGACTTCTTGCCTTCAAAAA+AGG | - | chr3_2:23827328-23827347 | None:intergenic | 40.0% | |
| GAGATGGGAAAATCAAGAGA+AGG | + | chr3_2:23827501-23827520 | Msa0400000:intron | 40.0% | |
| TTGGGGAGAAGATGATGAAA+GGG | - | chr3_2:23827534-23827553 | None:intergenic | 40.0% | |
| GCCTTCATGGACTTAAATTG+AGG | - | chr3_2:23827614-23827633 | None:intergenic | 40.0% | |
| TGACTTGATCAAAGCCTTCA+TGG | - | chr3_2:23827627-23827646 | None:intergenic | 40.0% | |
| TGACACATTGCAAGACAGTA+CGG | + | chr3_2:23827673-23827692 | Msa0400000:CDS | 40.0% | |
| AGAGATTGGCATTAAGAGCA+AGG | + | chr3_2:23827789-23827808 | Msa0400000:CDS | 40.0% | |
| GAGATTGGCATTAAGAGCAA+GGG | + | chr3_2:23827790-23827809 | Msa0400000:CDS | 40.0% | |
| ACCATTGCTTGAAATGGGTA+AGG | + | chr3_2:23827937-23827956 | Msa0400000:CDS | 40.0% | |
| TTGAAATGGGTAAGGCTGAA+AGG | + | chr3_2:23827945-23827964 | Msa0400000:CDS | 40.0% | |
| TTGGATGGGATGTGTGTTAA+AGG | + | chr3_2:23827968-23827987 | Msa0400000:CDS | 40.0% | |
| TGGATGGGATGTGTGTTAAA+GGG | + | chr3_2:23827969-23827988 | Msa0400000:CDS | 40.0% | |
| ! | ACATACGTCCTACATCGATT+TGG | - | chr3_2:23828135-23828154 | None:intergenic | 40.0% |
| CATTGCTATCCATGTAACAC+CGG | + | chr3_2:23828173-23828192 | Msa0400000:intron | 40.0% | |
| ATAAAACACCGACACTGGTA+TGG | - | chr3_2:23828337-23828356 | None:intergenic | 40.0% | |
| !!! | TACCAGTGTCGGTGTTTTAT+AGG | + | chr3_2:23828337-23828356 | Msa0400000:intron | 40.0% |
| AACCTATAAAACACCGACAC+TGG | - | chr3_2:23828342-23828361 | None:intergenic | 40.0% | |
| ! | CGGTGTTTTATAGGTTGCTA+AGG | + | chr3_2:23828346-23828365 | Msa0400000:intron | 40.0% |
| CATGCCTATAACTCTTGACT+TGG | + | chr3_2:23828608-23828627 | Msa0400000:CDS | 40.0% | |
| !! | CTCTTGACTTGGAGAATGTA+AGG | + | chr3_2:23828619-23828638 | Msa0400000:CDS | 40.0% |
| TGGAGAATGTAAGGCAAAAG+AGG | + | chr3_2:23828628-23828647 | Msa0400000:CDS | 40.0% | |
| GGAGAATGTAAGGCAAAAGA+GGG | + | chr3_2:23828629-23828648 | Msa0400000:CDS | 40.0% | |
| CCCGATCGTGACTTAAAATT+CGG | - | chr3_2:23828952-23828971 | None:intergenic | 40.0% | |
| !! | CCGAATTTTAAGTCACGATC+GGG | + | chr3_2:23828949-23828968 | Msa0400000:intron | 40.0% |
| GCAAAACAAGGAAGTTGCAA+AGG | + | chr3_2:23829185-23829204 | Msa0400000:CDS | 40.0% | |
| AGGAAGAGAAACAAAAGCCT+TGG | + | chr3_2:23829248-23829267 | Msa0400000:CDS | 40.0% | |
| !! | CAGCTTGATAATGTTGTGCA+AGG | - | chr3_2:23829294-23829313 | None:intergenic | 40.0% |
| ! | GAGTTACGTGATGTAACGGA+GGG | - | chr3_2:23826231-23826250 | None:intergenic | 45.0% |
| TGAGTTACGTGATGTAACGG+AGG | - | chr3_2:23826232-23826251 | None:intergenic | 45.0% | |
| CTTCTCTCCAGTGTGATCAA+TGG | + | chr3_2:23826345-23826364 | Msa0400000:exon | 45.0% | |
| !!! | GAAGCTTGGTTTTGCAAACC+TGG | + | chr3_2:23826496-23826515 | Msa0400000:CDS | 45.0% |
| CCCAATTGAGAAAACTGACC+AGG | - | chr3_2:23826517-23826536 | None:intergenic | 45.0% | |
| CAATCACCCAAAAACAGCAG+AGG | + | chr3_2:23826916-23826935 | Msa0400000:CDS | 45.0% | |
| CAGATCACCAAGTCCTTTCA+AGG | + | chr3_2:23826946-23826965 | Msa0400000:CDS | 45.0% | |
| TGGGGAGAAGATGATGAAAG+GGG | - | chr3_2:23827533-23827552 | None:intergenic | 45.0% | |
| CTTGGGGAGAAGATGATGAA+AGG | - | chr3_2:23827535-23827554 | None:intergenic | 45.0% | |
| GCCTTACCCATTTCAAGCAA+TGG | - | chr3_2:23827941-23827960 | None:intergenic | 45.0% | |
| AATGGGTAAGGCTGAAAGGT+TGG | + | chr3_2:23827949-23827968 | Msa0400000:CDS | 45.0% | |
| GTAAGGCTGAAAGGTTGGAT+GGG | + | chr3_2:23827954-23827973 | Msa0400000:CDS | 45.0% | |
| !! | ACTAAAGTGCCGGTGTTACA+TGG | - | chr3_2:23828185-23828204 | None:intergenic | 45.0% |
| !! | ACACCGGCACTTTAGTTTGA+AGG | + | chr3_2:23828189-23828208 | Msa0400000:intron | 45.0% |
| ACGCCTTCAAACTAAAGTGC+CGG | - | chr3_2:23828195-23828214 | None:intergenic | 45.0% | |
| ! | TTGAAGGCGTGTCTTAAGTC+TGG | + | chr3_2:23828205-23828224 | Msa0400000:intron | 45.0% |
| TGTCTAACACCGACATATGC+CGG | + | chr3_2:23828240-23828259 | Msa0400000:intron | 45.0% | |
| ATGTAACCACCGGCATATGT+CGG | - | chr3_2:23828252-23828271 | None:intergenic | 45.0% | |
| TCCAATGTCCATACCAGTGT+CGG | + | chr3_2:23828326-23828345 | Msa0400000:intron | 45.0% | |
| GTTGCTAAGGTAGGCAATCT+AGG | + | chr3_2:23828359-23828378 | Msa0400000:intron | 45.0% | |
| ATTGTGCAGAAGACCTGATG+AGG | + | chr3_2:23828578-23828597 | Msa0400000:intron | 45.0% | |
| GAAAAACACTGAGGAGAAGG+AGG | - | chr3_2:23828684-23828703 | None:intergenic | 45.0% | |
| GCAGAAAAACACTGAGGAGA+AGG | - | chr3_2:23828687-23828706 | None:intergenic | 45.0% | |
| ! | TCTCCTCAGTGTTTTTCTGC+TGG | + | chr3_2:23828687-23828706 | Msa0400000:CDS | 45.0% |
| ! | CTCCTCAGTGTTTTTCTGCT+GGG | + | chr3_2:23828688-23828707 | Msa0400000:CDS | 45.0% |
| AATAACCCTACCCCCTCAAA+AGG | + | chr3_2:23828714-23828733 | Msa0400000:CDS | 45.0% | |
| GATGATGAGGCTTATCATGC+AGG | + | chr3_2:23829137-23829156 | Msa0400000:intron | 45.0% | |
| CAAAAGCCTTGGACATGTTC+TGG | + | chr3_2:23829259-23829278 | Msa0400000:CDS | 45.0% | |
| GAAGAACCAGAACATGTCCA+AGG | - | chr3_2:23829268-23829287 | None:intergenic | 45.0% | |
| !!! | ATTTTTATTTTTTTATCAAT+TGG | + | chr3_2:23826762-23826781 | Msa0400000:intron | 5.0% |
| !!! | TTTTTATTTTTTTATCAATT+GGG | + | chr3_2:23826763-23826782 | Msa0400000:intron | 5.0% |
| TGAGAGAGAGAGAGAGACAG+AGG | - | chr3_2:23826300-23826319 | None:intergenic | 50.0% | |
| CACTGGAGAGAAGAGAGAGA+GGG | - | chr3_2:23826338-23826357 | None:intergenic | 50.0% | |
| ACACTGGAGAGAAGAGAGAG+AGG | - | chr3_2:23826339-23826358 | None:intergenic | 50.0% | |
| TGGAACCCGCGAAAATCGAT+TGG | + | chr3_2:23826365-23826384 | Msa0400000:CDS | 50.0% | |
| CAACAAACTTGGGTGCGTTG+AGG | - | chr3_2:23826435-23826454 | None:intergenic | 50.0% | |
| !!! | CTTCTATTTTGGTCGGCGCT+TGG | - | chr3_2:23827373-23827392 | None:intergenic | 50.0% |
| !! | CAAGCGCCGACCAAAATAGA+AGG | + | chr3_2:23827371-23827390 | Msa0400000:CDS | 50.0% |
| GGAGAAGATGATGAAAGGGG+TGG | - | chr3_2:23827530-23827549 | None:intergenic | 50.0% | |
| CACATTGCAAGACAGTACGG+AGG | + | chr3_2:23827676-23827695 | Msa0400000:CDS | 50.0% | |
| ! | AACTCTGCCAAAGCGTTCAC+CGG | - | chr3_2:23827893-23827912 | None:intergenic | 50.0% |
| GGTAAGGCTGAAAGGTTGGA+TGG | + | chr3_2:23827953-23827972 | Msa0400000:CDS | 50.0% | |
| ACCGACACTGGTATGGACAT+TGG | - | chr3_2:23828330-23828349 | None:intergenic | 50.0% | |
| ! | GGCATGTTTTCTGCCTCATC+AGG | - | chr3_2:23828594-23828613 | None:intergenic | 50.0% |
| AGCCCAGCAGAAAAACACTG+AGG | - | chr3_2:23828693-23828712 | None:intergenic | 50.0% | |
| !! | TGGAACCTTTTGAGGGGGTA+GGG | - | chr3_2:23828722-23828741 | None:intergenic | 50.0% |
| !! | GGATCTGGAACCTTTTGAGG+GGG | - | chr3_2:23828727-23828746 | None:intergenic | 50.0% |
| !! | GGGATCTGGAACCTTTTGAG+GGG | - | chr3_2:23828728-23828747 | None:intergenic | 50.0% |
| !! | CGGGATCTGGAACCTTTTGA+GGG | - | chr3_2:23828729-23828748 | None:intergenic | 50.0% |
| CCTCAAAAGGTTCCAGATCC+CGG | + | chr3_2:23828727-23828746 | Msa0400000:CDS | 50.0% | |
| ACATACCATTAGCCGGGATC+TGG | - | chr3_2:23828742-23828761 | None:intergenic | 50.0% | |
| GTTGGGACATACCATTAGCC+GGG | - | chr3_2:23828748-23828767 | None:intergenic | 50.0% | |
| GGTTGGGACATACCATTAGC+CGG | - | chr3_2:23828749-23828768 | None:intergenic | 50.0% | |
| AGGCTTATCATGCAGGAGAG+AGG | + | chr3_2:23829144-23829163 | Msa0400000:intron | 50.0% | |
| GAGAGAGAGAGAGACAGAGG+TGG | - | chr3_2:23826297-23826316 | None:intergenic | 55.0% | |
| GCGGGTTCCATTGATCACAC+TGG | - | chr3_2:23826355-23826374 | None:intergenic | 55.0% | |
| GGTGAACGCTTTGGCAGAGT+TGG | + | chr3_2:23827892-23827911 | Msa0400000:CDS | 55.0% | |
| CTAACACCGACATATGCCGG+TGG | + | chr3_2:23828243-23828262 | Msa0400000:intron | 55.0% | |
| !! | CTGGAACCTTTTGAGGGGGT+AGG | - | chr3_2:23828723-23828742 | None:intergenic | 55.0% |
| !! | CCGGGATCTGGAACCTTTTG+AGG | - | chr3_2:23828730-23828749 | None:intergenic | 55.0% |
| AGGTTCCAGATCCCGGCTAA+TGG | + | chr3_2:23828734-23828753 | Msa0400000:CDS | 55.0% | |
| TGTGCACGAGAAGACCTCGC+CGG | + | chr3_2:23827871-23827890 | Msa0400000:CDS | 60.0% | |
| GACCTCGCCGGTGAACGCTT+TGG | + | chr3_2:23827883-23827902 | Msa0400000:CDS | 65.0% | |
| ! | TGCCAAAGCGTTCACCGGCG+AGG | - | chr3_2:23827888-23827907 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 23826219 | 23829550 | 23826219 | ID=Msa0400000;Name=Msa0400000 |
| chr3_2 | mRNA | 23826219 | 23829550 | 23826219 | ID=Msa0400000-mRNA-1;Parent=Msa0400000;Name=Msa0400000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=145|1|1|1|1|1|6|236|365 |
| chr3_2 | exon | 23826219 | 23826517 | 23826219 | ID=Msa0400000-mRNA-1:exon:5006;Parent=Msa0400000-mRNA-1 |
| chr3_2 | exon | 23826912 | 23826967 | 23826912 | ID=Msa0400000-mRNA-1:exon:5007;Parent=Msa0400000-mRNA-1 |
| chr3_2 | exon | 23827337 | 23827392 | 23827337 | ID=Msa0400000-mRNA-1:exon:5008;Parent=Msa0400000-mRNA-1 |
| chr3_2 | exon | 23827502 | 23828008 | 23827502 | ID=Msa0400000-mRNA-1:exon:5009;Parent=Msa0400000-mRNA-1 |
| chr3_2 | exon | 23828587 | 23828755 | 23828587 | ID=Msa0400000-mRNA-1:exon:5010;Parent=Msa0400000-mRNA-1 |
| chr3_2 | exon | 23829159 | 23829550 | 23829159 | ID=Msa0400000-mRNA-1:exon:5011;Parent=Msa0400000-mRNA-1 |
| chr3_2 | five_prime_UTR | 23826219 | 23826363 | 23826219 | ID=Msa0400000-mRNA-1:five_prime_utr;Parent=Msa0400000-mRNA-1 |
| chr3_2 | CDS | 23826364 | 23826517 | 23826364 | ID=Msa0400000-mRNA-1:cds;Parent=Msa0400000-mRNA-1 |
| chr3_2 | CDS | 23826912 | 23826967 | 23826912 | ID=Msa0400000-mRNA-1:cds;Parent=Msa0400000-mRNA-1 |
| chr3_2 | CDS | 23827337 | 23827392 | 23827337 | ID=Msa0400000-mRNA-1:cds;Parent=Msa0400000-mRNA-1 |
| chr3_2 | CDS | 23827502 | 23828008 | 23827502 | ID=Msa0400000-mRNA-1:cds;Parent=Msa0400000-mRNA-1 |
| chr3_2 | CDS | 23828587 | 23828755 | 23828587 | ID=Msa0400000-mRNA-1:cds;Parent=Msa0400000-mRNA-1 |
| chr3_2 | CDS | 23829159 | 23829314 | 23829159 | ID=Msa0400000-mRNA-1:cds;Parent=Msa0400000-mRNA-1 |
| chr3_2 | three_prime_UTR | 23829315 | 23829550 | 23829315 | ID=Msa0400000-mRNA-1:three_prime_utr;Parent=Msa0400000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
