AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0517360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517360 MtrunA17_Chr3g0118641 90.899 923 35 3 9 903 1 902 0.0 1716
Msa0517360 MtrunA17_Chr3g0118651 71.659 928 205 9 9 903 1 903 0.0 1355
Msa0517360 MtrunA17_Chr3g0118621 74.603 882 161 6 64 903 5 865 0.0 1309
Msa0517360 MtrunA17_Chr4g0033171 58.540 726 247 7 208 903 24 725 0.0 880
Msa0517360 MtrunA17_Chr8g0344201 45.126 831 391 12 111 902 122 926 0.0 743
Msa0517360 MtrunA17_Chr8g0377101 44.277 865 407 16 86 903 80 916 0.0 723
Msa0517360 MtrunA17_Chr1g0205611 41.420 845 415 16 111 903 40 856 0.0 622
Msa0517360 MtrunA17_Chr4g0047281 38.614 909 461 18 41 902 36 894 0.0 614
Msa0517360 MtrunA17_Chr2g0329911 40.023 852 429 18 97 903 47 861 0.0 612
Msa0517360 MtrunA17_Chr1g0191921 41.940 794 399 10 146 903 91 858 0.0 612
Msa0517360 MtrunA17_Chr8g0342881 42.145 802 385 16 144 903 92 856 0.0 608
Msa0517360 MtrunA17_Chr8g0343031 38.889 846 436 15 102 903 57 865 0.0 598
Msa0517360 MtrunA17_Chr8g0343021 38.785 856 438 16 98 903 45 864 0.0 596
Msa0517360 MtrunA17_Chr2g0329901 40.071 846 434 15 99 903 50 863 0.0 594
Msa0517360 MtrunA17_Chr8g0343011 40.071 846 427 16 100 903 58 865 0.0 593
Msa0517360 MtrunA17_Chr8g0342921 39.111 900 464 20 54 903 4 869 0.0 591
Msa0517360 MtrunA17_Chr8g0342971 41.280 797 400 14 144 903 105 870 0.0 588
Msa0517360 MtrunA17_Chr8g0344211 39.812 849 436 16 97 903 53 868 0.0 587
Msa0517360 MtrunA17_Chr7g0272791 39.620 843 436 15 107 903 52 867 0.0 585
Msa0517360 MtrunA17_Chr8g0342891 39.322 885 457 16 68 903 8 861 0.0 580
Msa0517360 MtrunA17_Chr8g0342931 41.816 782 386 15 159 903 1 750 0.0 579
Msa0517360 MtrunA17_Chr5g0406871 37.255 867 457 16 86 903 39 867 0.0 576
Msa0517360 MtrunA17_Chr3g0120071 37.778 855 448 16 98 903 39 858 0.0 566
Msa0517360 MtrunA17_Chr8g0342951 39.209 885 452 17 73 903 16 868 0.0 566
Msa0517360 MtrunA17_Chr8g0342901 37.943 875 450 17 68 903 8 828 0.0 565
Msa0517360 MtrunA17_Chr8g0342981 39.565 781 383 16 163 903 92 823 5.27e-175 528
Msa0517360 MtrunA17_Chr8g0338451 36.340 776 424 14 149 886 107 850 1.68e-169 515
Msa0517360 MtrunA17_Chr8g0342991 38.846 780 375 12 156 903 98 807 2.25e-166 505
Msa0517360 MtrunA17_Chr8g0343001 38.996 777 378 10 156 903 98 807 1.12e-165 503
Msa0517360 MtrunA17_Chr8g0344241 41.562 397 200 4 537 903 67 461 6.38e-98 314
Msa0517360 MtrunA17_Chr6g0471951 38.404 401 211 7 490 858 78 474 1.82e-92 301
Msa0517360 MtrunA17_Chr4g0033181 48.980 147 65 3 86 223 75 220 1.16e-37 141
Msa0517360 MtrunA17_Chr7g0218231 53.782 119 27 1 581 671 14 132 2.02e-36 134
Msa0517360 MtrunA17_Chr6g0468081 44.944 89 21 1 611 671 1 89 5.05e-18 80.1
Msa0517360 MtrunA17_Chr4g0047271 49.438 89 44 1 813 900 1 89 1.11e-16 76.3
Msa0517360 MtrunA17_Chr5g0421231 73.469 49 7 1 298 346 45 87 6.72e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0517360 AT3G45140.1 50.604 828 345 9 108 903 101 896 0.0 852
Msa0517360 AT3G45140.2 52.113 781 315 8 155 903 1 754 0.0 832
Msa0517360 AT1G72520.1 45.139 864 399 18 86 903 92 926 0.0 744
Msa0517360 AT1G17420.1 41.998 931 460 14 25 903 17 919 0.0 732
Msa0517360 AT1G67560.1 43.253 830 405 14 113 903 115 917 0.0 678
Msa0517360 AT1G55020.1 43.468 842 400 15 107 903 49 859 0.0 654
Msa0517360 AT3G22400.1 40.184 871 439 16 87 903 44 886 0.0 622

Find 178 sgRNAs with CRISPR-Local

Find 459 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCATTCCAAAGTTCTTTA+AGG 0.084556 3_4:-68951750 Msa0517360:CDS
CATGTTCTTGTTCATGATTC+TGG 0.145766 3_4:-68950915 Msa0517360:CDS
CTAGCAATGGTTGGTCTATT+AGG 0.152823 3_4:+68949926 None:intergenic
CCAATGATGGTCTTCTAATA+TGG 0.155765 3_4:-68950207 Msa0517360:CDS
TTTGAGTTACCAGCAAATTT+TGG 0.176746 3_4:-68954338 Msa0517360:CDS
GAAATCTTCTCTAGGTAAAA+AGG 0.212403 3_4:-68956493 Msa0517360:CDS
AACTTACTCTTGTATGGTTC+CGG 0.228161 3_4:+68951689 None:intergenic
TTAACCAATTGGATGCTATA+TGG 0.237885 3_4:+68951502 None:intergenic
GTGGCCTTTGAAAAGTAAAT+TGG 0.239348 3_4:-68951366 Msa0517360:CDS
TATCAAAGCGCACGATATTT+TGG 0.241301 3_4:+68951714 None:intergenic
CTCACAACAATAGTACTAAT+TGG 0.244785 3_4:-68956521 Msa0517360:CDS
TGGAAATGTGGGTGCTGTTT+TGG 0.252907 3_4:-68954318 Msa0517360:CDS
TGGTAACAAACACTTAATTT+TGG 0.253312 3_4:-68956316 Msa0517360:CDS
TGTACCAAACTAGGTTTAAA+TGG 0.259190 3_4:+68949523 None:intergenic
TTTACACAATATGCTTATAT+TGG 0.266930 3_4:-68949956 Msa0517360:CDS
CTGTGTGTTGCAATTATAAT+AGG 0.269350 3_4:+68950761 None:intergenic
ATGAAGAAAACTCTCTTTGT+AGG 0.284450 3_4:+68954182 None:intergenic
CCAACCAGAGCAAACACTTT+TGG 0.289754 3_4:-68949849 Msa0517360:CDS
GTGACTCCAGGCCCTGAAAA+TGG 0.302315 3_4:+68949572 None:intergenic
CTAAAGAATATAGTCCTTGA+TGG 0.311025 3_4:-68954266 Msa0517360:CDS
ATTCTGATTCCACCAATATC+TGG 0.318341 3_4:-68950959 Msa0517360:CDS
ATTCTGGTGGACCATAGATT+TGG 0.321973 3_4:+68951339 None:intergenic
TAGCAATGGTTGGTCTATTA+GGG 0.323422 3_4:+68949927 None:intergenic
GAGTCATTGGATTCAAGATT+TGG 0.329758 3_4:+68951788 None:intergenic
ACCTCAAAAGACCTGTTCTT+GGG 0.332457 3_4:-68952279 Msa0517360:CDS
TTGGAGAAAATTAGAGTCAT+TGG 0.335757 3_4:+68951775 None:intergenic
ATATCCATTTAAACCTAGTT+TGG 0.337278 3_4:-68949527 Msa0517360:exon
AGTGATATACATTTATCATT+TGG 0.342964 3_4:-68949386 Msa0517360:three_prime_UTR
TCAAAGGGAGAGACAATAAA+AGG 0.344418 3_4:-68954413 Msa0517360:CDS
GTTCATTTGATAAAGAATAA+AGG 0.345576 3_4:-68949413 Msa0517360:three_prime_UTR
GTGCGACACCGTCTAGGATA+TGG 0.348649 3_4:+68952241 None:intergenic
TCTCTAGTAATTGCTGATTC+TGG 0.358260 3_4:+68951323 None:intergenic
CTCATCAAGAATATTGTTAC+TGG 0.359156 3_4:-68956345 Msa0517360:CDS
CTCAGCTTTCTTAATCCACT+TGG 0.360020 3_4:+68952415 None:intergenic
AGGAATTTGAAGAATAGAAA+TGG 0.362166 3_4:-68949626 Msa0517360:CDS
ACTTACTCTTGTATGGTTCC+GGG 0.363410 3_4:+68951690 None:intergenic
TGTTTGAACTTACTCTTGTA+TGG 0.364028 3_4:+68951683 None:intergenic
TGTCCAATGTACTCTTCATC+TGG 0.364172 3_4:+68949758 None:intergenic
AATACTTCTGCCGTATCTTT+AGG 0.368151 3_4:-68951917 Msa0517360:CDS
ATAGTCACTGATATAAATCT+TGG 0.370327 3_4:-68951863 Msa0517360:CDS
CCCACATTTCCAAAATTTGC+TGG 0.375304 3_4:+68954329 None:intergenic
ATTGAGGGAACAACACTATA+TGG 0.375357 3_4:-68951095 Msa0517360:CDS
TTAGCATCCTTAAAGAACTT+TGG 0.376602 3_4:+68951743 None:intergenic
AATATTGTTACTGGTATTGT+TGG 0.378392 3_4:-68956336 Msa0517360:CDS
GACCTCAAAAGACCTGTTCT+TGG 0.381282 3_4:-68952280 Msa0517360:CDS
TCTATGTGCTAGATTTGTAT+TGG 0.384673 3_4:-68949468 Msa0517360:three_prime_UTR
TCGAAAAGAATGATATTTCA+AGG 0.387741 3_4:+68950630 None:intergenic
TTCACTCCATGTTGTGCATT+CGG 0.389037 3_4:+68950256 None:intergenic
GGGTGAGAATTCAACTATAA+AGG 0.389284 3_4:-68949717 Msa0517360:CDS
ATATTGGTGGAATCAGAATT+AGG 0.390188 3_4:+68950963 None:intergenic
GAATCCATGATTGACAATTA+AGG 0.395271 3_4:+68954222 None:intergenic
GTACTCCTTTCTTCATATAG+TGG 0.399010 3_4:+68951998 None:intergenic
CATTGTGCCTTGCCATCAAT+AGG 0.401726 3_4:+68951002 None:intergenic
GGTCGAAAGCATTCTGATAC+AGG 0.402041 3_4:-68952217 Msa0517360:intron
CCACCAATATCTGGCTTTGG+AGG 0.402930 3_4:-68950950 Msa0517360:CDS
CACCAAGATATAATATCATA+TGG 0.404421 3_4:+68956643 None:intergenic
AAGCCTCCAAAGCCAGATAT+TGG 0.404646 3_4:+68950947 None:intergenic
TCCACCTTAATTGTCAATCA+TGG 0.405732 3_4:-68954226 Msa0517360:CDS
TTAAGGTGGACAGGGCCATC+AGG 0.407562 3_4:+68954239 None:intergenic
TAACCAATTGGATGCTATAT+GGG 0.408073 3_4:+68951503 None:intergenic
ATTCCACCAATATCTGGCTT+TGG 0.411670 3_4:-68950953 Msa0517360:CDS
AAATTGGATGCCCAAATCTA+TGG 0.413135 3_4:-68951350 Msa0517360:CDS
CATTCCAAAAGTGTTTGCTC+TGG 0.419934 3_4:+68949845 None:intergenic
TTCTGGTGGACCATAGATTT+GGG 0.421786 3_4:+68951340 None:intergenic
TCTAGGATATGGATATTGTT+TGG 0.425065 3_4:+68952252 None:intergenic
TATGATGTCTATAATGATCT+TGG 0.425109 3_4:-68952322 Msa0517360:CDS
GTTTAAATGGATATGCTGTA+TGG 0.426545 3_4:+68949536 None:intergenic
GTCCTTGATGGTTTCCCTGA+TGG 0.427910 3_4:-68954254 Msa0517360:CDS
TTGTAGGGGATAGATTCTTT+TGG 0.428079 3_4:-68951570 Msa0517360:intron
CTCACTAGACCACCTATTGA+TGG 0.432807 3_4:-68951014 Msa0517360:CDS
CCAAAAGTGTTTGCTCTGGT+TGG 0.436594 3_4:+68949849 None:intergenic
GAATTTCTGTCCACCATGCT+TGG 0.436612 3_4:+68950104 None:intergenic
TCCTTAGTAGGGTCTTCTGT+TGG 0.439100 3_4:+68949893 None:intergenic
TTTGTAGGAGTATCATGCTT+AGG 0.439282 3_4:+68954197 None:intergenic
TTTCCCATTCTTCCTTAGTA+GGG 0.440122 3_4:+68949882 None:intergenic
TTGAGGTCAGCGGTTATGTC+AGG 0.448323 3_4:+68952295 None:intergenic
ATGTCCATGCCTTAACCAAT+TGG 0.451067 3_4:+68951491 None:intergenic
AAGACCCTACTAAGGAAGAA+TGG 0.454559 3_4:-68949886 Msa0517360:CDS
TCTCTCAGTTTGCTAACATA+TGG 0.455221 3_4:+68951119 None:intergenic
ATATCATATGGTTGGTTGGT+TGG 0.455481 3_4:+68956655 None:intergenic
GGGCCTGGAGTCACTGGAAA+AGG 0.458638 3_4:-68949563 Msa0517360:CDS
ATAGAAGCAATTTACAAAGA+AGG 0.458987 3_4:-68951821 Msa0517360:CDS
ATGAACAAGAACATGAGCTT+TGG 0.461543 3_4:+68950923 None:intergenic
TAGACTCAAGGAATGAAGAT+AGG 0.461905 3_4:-68949646 Msa0517360:CDS
TATAATATCATATGGTTGGT+TGG 0.462538 3_4:+68956651 None:intergenic
AACCATATGATATTATATCT+TGG 0.463626 3_4:-68956645 Msa0517360:exon
CCATATTAGAAGACCATCAT+TGG 0.472250 3_4:+68950207 None:intergenic
GGCACCAGCCAAAGTCTCTC+TGG 0.472557 3_4:+68951528 None:intergenic
TTTCTCCGTCCTATAATTGG+AGG 0.476414 3_4:-68956554 Msa0517360:CDS
CTAATAGAACTAAGAGGGAA+TGG 0.477908 3_4:-68952382 Msa0517360:CDS
ATATAGCATCCAATTGGTTA+AGG 0.478204 3_4:-68951500 Msa0517360:CDS
GATGAGCTAATAGAACTAAG+AGG 0.478619 3_4:-68952388 Msa0517360:CDS
AGACCCTACTAAGGAAGAAT+GGG 0.480218 3_4:-68949885 Msa0517360:CDS
TTTGCCAGAGAGACTTTGGC+TGG 0.481032 3_4:-68951532 Msa0517360:CDS
ATAAGAGTAGTGATGGCAAA+AGG 0.486600 3_4:-68956441 Msa0517360:CDS
GATTGACAATTAAGGTGGAC+AGG 0.489484 3_4:+68954230 None:intergenic
AATGGCTTTAAAGACTCATA+AGG 0.490739 3_4:+68949590 None:intergenic
TAGTCACTGATATAAATCTT+GGG 0.491052 3_4:-68951862 Msa0517360:CDS
GGAATTTGCCAGAGAGACTT+TGG 0.496070 3_4:-68951536 Msa0517360:CDS
TAGCAAACTGAGAGAGATTG+AGG 0.496616 3_4:-68951111 Msa0517360:CDS
ACTCTTGTATGTACCAAACT+AGG 0.499617 3_4:+68949514 None:intergenic
ATGAATGATTGATGTACATA+TGG 0.501544 3_4:+68956594 None:intergenic
CTAGTAATTGCTGATTCTGG+TGG 0.502077 3_4:+68951326 None:intergenic
CAATGATGGTCTTCTAATAT+GGG 0.505833 3_4:-68950206 Msa0517360:CDS
CAACCCATATAGCATCCAAT+TGG 0.511275 3_4:-68951506 Msa0517360:CDS
AGAAGACCATCATTGGCAAA+AGG 0.513023 3_4:+68950214 None:intergenic
TACTCCTTTCTTCATATAGT+GGG 0.517291 3_4:+68951999 None:intergenic
AAGATATAATATCATATGGT+TGG 0.517456 3_4:+68956647 None:intergenic
AGATGCTGTCCAAGCTATAG+TGG 0.518404 3_4:+68950000 None:intergenic
CTATTCTTTCTTACTAGTGA+AGG 0.521142 3_4:-68951062 Msa0517360:CDS
AGGAGATTGAATGAAATTGA+AGG 0.525552 3_4:-68949674 Msa0517360:CDS
GATTCTATAATGTCTGAGCT+TGG 0.526176 3_4:+68950139 None:intergenic
CCTCAAAAGACCTGTTCTTG+GGG 0.526691 3_4:-68952278 Msa0517360:CDS
ACATCATTACCACTATAGCT+TGG 0.532589 3_4:-68950009 Msa0517360:CDS
GAACTAAGAGGGAATGGAGA+AGG 0.533603 3_4:-68952376 Msa0517360:CDS
TATATATAAGTTATTGTGAA+AGG 0.534938 3_4:+68951442 None:intergenic
TGGTTCTTGAAATCTTCTCT+AGG 0.535689 3_4:-68956501 Msa0517360:CDS
TTTAAATGGATATGCTGTAT+GGG 0.542203 3_4:+68949537 None:intergenic
CTAATAGACCAACCATTGCT+AGG 0.542574 3_4:-68949925 Msa0517360:CDS
CATGAAGAAGCAAACTCAAA+GGG 0.543155 3_4:-68954428 Msa0517360:intron
AACTTACAGCACAGTTGAAG+AGG 0.543581 3_4:-68951279 Msa0517360:intron
GCCAACAGAAGACCCTACTA+AGG 0.544940 3_4:-68949894 Msa0517360:CDS
CAGACCCACTATATGAAGAA+AGG 0.547760 3_4:-68952003 Msa0517360:CDS
CAATTGGATGCTATATGGGT+TGG 0.548678 3_4:+68951507 None:intergenic
TGTAGTCAAGCCTAAAGATA+CGG 0.551843 3_4:+68951907 None:intergenic
CGCAACTTTATTGATCTCCA+TGG 0.555615 3_4:+68950682 None:intergenic
AATCCACTTGGTGTTTGTGA+TGG 0.558499 3_4:+68952427 None:intergenic
GGCCATCAGGGAAACCATCA+AGG 0.563223 3_4:+68954252 None:intergenic
ATCATAATCATAGATTCTGT+CGG 0.564842 3_4:+68952339 None:intergenic
CGACCGGTGCGACACCGTCT+AGG 0.566262 3_4:+68952235 None:intergenic
TTGAAGAATAGAAATGGAGC+TGG 0.572230 3_4:-68949620 Msa0517360:CDS
CCTCCAAAGCCAGATATTGG+TGG 0.572821 3_4:+68950950 None:intergenic
TTGAAGGTATTATAGACTCA+AGG 0.576809 3_4:-68949658 Msa0517360:CDS
GCATCCAATTGGTTAAGGCA+TGG 0.581027 3_4:-68951495 Msa0517360:CDS
TAAGGTGGACAGGGCCATCA+GGG 0.582528 3_4:+68954240 None:intergenic
ATGAGCTAATAGAACTAAGA+GGG 0.582546 3_4:-68952387 Msa0517360:CDS
GCATGAAGAAGCAAACTCAA+AGG 0.583412 3_4:-68954429 Msa0517360:intron
TAGTTGTATAAGAGTAGTGA+TGG 0.586287 3_4:-68956448 Msa0517360:CDS
CTTACTCTTGTATGGTTCCG+GGG 0.587013 3_4:+68951691 None:intergenic
GTTGAATTCTCACCCCAAGA+TGG 0.587735 3_4:+68949725 None:intergenic
CATATGATATTATATCTTGG+TGG 0.587795 3_4:-68956642 Msa0517360:CDS
TATCCTAGACGGTGTCGCAC+CGG 0.590911 3_4:-68952238 Msa0517360:CDS
AGCAAACTGAGAGAGATTGA+GGG 0.591240 3_4:-68951110 Msa0517360:CDS
GAAGTTCTCATTAATGCAAG+TGG 0.591680 3_4:-68950656 Msa0517360:CDS
ATCTAGCACATAGAAAATGT+AGG 0.594196 3_4:+68949477 None:intergenic
ATCATGAGCTAATAAGCCAT+TGG 0.594756 3_4:-68950890 Msa0517360:intron
TGTATCAGAATGCTTTCGAC+CGG 0.595298 3_4:+68952219 None:intergenic
AAGGTTTGCATAAGAAGGGG+TGG 0.596610 3_4:-68956474 Msa0517360:CDS
TATGGGATGCAATTAAACAA+TGG 0.596842 3_4:-68950189 Msa0517360:CDS
AACAATATCCATATCCTAGA+CGG 0.598592 3_4:-68952249 Msa0517360:CDS
TAGACCACCTATTGATGGCA+AGG 0.603643 3_4:-68951009 Msa0517360:CDS
TTGCCATCACAAACACCAAG+TGG 0.605543 3_4:-68952430 Msa0517360:CDS
TGTGCCTTGCCATCAATAGG+TGG 0.607674 3_4:+68951005 None:intergenic
TCAGCAAATGCCTCGTCACG+AGG 0.615936 3_4:+68951959 None:intergenic
CTTCTATGTTCCTCGTGACG+AGG 0.615973 3_4:-68951969 Msa0517360:CDS
TCCATGGTATATCTCAGATG+TGG 0.618261 3_4:+68950698 None:intergenic
TGGACAGAAATTCGAACAGT+GGG 0.618301 3_4:-68950094 Msa0517360:CDS
CTAGTGAGCTCAATAGCTAG+TGG 0.619729 3_4:+68951029 None:intergenic
TCACCAGATGAAGAGTACAT+TGG 0.620155 3_4:-68949761 Msa0517360:CDS
GAAGATCCGAATGCACAACA+TGG 0.622736 3_4:-68950262 Msa0517360:CDS
TCCATGATTGACAATTAAGG+TGG 0.624709 3_4:+68954225 None:intergenic
TATCGTGCGCTTTGATACCC+CGG 0.626726 3_4:-68951708 Msa0517360:CDS
GCTAAGAACTCATTGTGTTG+TGG 0.627066 3_4:-68950786 Msa0517360:CDS
CTGATCAAGAGCTCCAAGCA+TGG 0.628834 3_4:-68950117 Msa0517360:CDS
CAGTAACAATATTCTTGATG+AGG 0.640270 3_4:+68956346 None:intergenic
CTATTGATGGCAAGGCACAA+TGG 0.641673 3_4:-68951001 Msa0517360:CDS
AAGTTCTCATTAATGCAAGT+GGG 0.643884 3_4:-68950655 Msa0517360:CDS
AAAAGCTTTAGTGAGTGTGA+AGG 0.645031 3_4:-68956382 Msa0517360:CDS
ATTGACAATTAAGGTGGACA+GGG 0.652090 3_4:+68954231 None:intergenic
CGGACAAATCTGAAGAACCA+TGG 0.653620 3_4:-68950066 Msa0517360:CDS
TCCACATCTGAGATATACCA+TGG 0.656207 3_4:-68950699 Msa0517360:CDS
CTCAAAAGACCTGTTCTTGG+GGG 0.662000 3_4:-68952277 Msa0517360:CDS
ATCAAGAGCTCCAAGCATGG+TGG 0.666595 3_4:-68950114 Msa0517360:CDS
AATTCGAACAGTGGGACATG+CGG 0.669148 3_4:-68950086 Msa0517360:CDS
GTGGACAGAAATTCGAACAG+TGG 0.676492 3_4:-68950095 Msa0517360:CDS
GTGAGTGTGAAGGAAAGTGA+TGG 0.706550 3_4:-68956372 Msa0517360:CDS
AGTGTGAAGGAAAGTGATGG+TGG 0.718611 3_4:-68956369 Msa0517360:CDS
ACAAATCTGAAGAACCATGG+TGG 0.731842 3_4:-68950063 Msa0517360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTATTTTATATAA+TGG + chr3_4:68953276-68953295 None:intergenic 0.0%
!! ATAAATTAAAAAATGAATAC+TGG + chr3_4:68953170-68953189 None:intergenic 10.0%
!!! TATTGAATGAATTTAAAACA+TGG + chr3_4:68949988-68950007 None:intergenic 15.0%
!! TATTGAATGAATCTATAATA+TGG - chr3_4:68950049-68950068 Msa0517360:CDS 15.0%
!! TATAATTTAAGAGTTCAAAT+GGG - chr3_4:68950102-68950121 Msa0517360:CDS 15.0%
!!! AATTGGTGTAAAATTTTTTA+GGG + chr3_4:68950448-68950467 None:intergenic 15.0%
!!! AAATTGGTGTAAAATTTTTT+AGG + chr3_4:68950449-68950468 None:intergenic 15.0%
!! AATCAATAGATAAATATACT+AGG + chr3_4:68950672-68950691 None:intergenic 15.0%
!! ATCTATATGATGATAAAAAA+TGG - chr3_4:68950693-68950712 Msa0517360:CDS 15.0%
!! TATAATAGATAGATACTTTA+TGG + chr3_4:68950722-68950741 None:intergenic 15.0%
!! TTTACTAATAAGAAATTCAT+GGG + chr3_4:68952291-68952310 None:intergenic 15.0%
!! AAATTTGTAATATTGTTTCA+TGG - chr3_4:68953073-68953092 Msa0517360:intron 15.0%
!! AATTTGTAATATTGTTTCAT+GGG - chr3_4:68953074-68953093 Msa0517360:intron 15.0%
!! AATAACATACAAATTAAATC+AGG + chr3_4:68953576-68953595 None:intergenic 15.0%
!!! TTGCATATATTTTTCTTAAT+TGG - chr3_4:68953937-68953956 Msa0517360:intron 15.0%
!! TATATATAAGTTATTGTGAA+AGG + chr3_4:68954614-68954633 None:intergenic 15.0%
!! AAGATATAATATCATATGGT+TGG + chr3_4:68949409-68949428 None:intergenic 20.0%
!! AACCATATGATATTATATCT+TGG - chr3_4:68949408-68949427 Msa0517360:three_prime_UTR 20.0%
!!! AATATTTTTCCTCCAATTAT+AGG + chr3_4:68949511-68949530 None:intergenic 20.0%
!! ATTAATCTCATAAACTTACT+TGG + chr3_4:68949786-68949805 None:intergenic 20.0%
!!! GAATAATTATGATTTGTCAA+TGG + chr3_4:68949841-68949860 None:intergenic 20.0%
!!! TTTTTGCTTATATTTATGAC+CGG - chr3_4:68950073-68950092 Msa0517360:CDS 20.0%
!! GTATAATTTAAGAGTTCAAA+TGG - chr3_4:68950101-68950120 Msa0517360:CDS 20.0%
!! AAAAACATCATTAACAAAAG+TGG - chr3_4:68950188-68950207 Msa0517360:CDS 20.0%
!! AGAATCCAAATTCAATTATT+AGG - chr3_4:68950277-68950296 Msa0517360:CDS 20.0%
!! TTCTACCTAATAATTGAATT+TGG + chr3_4:68950285-68950304 None:intergenic 20.0%
!! GAGAATAAAACATGTTAAAT+TGG + chr3_4:68950465-68950484 None:intergenic 20.0%
!! TTAAGGTGTATAATAACATT+GGG - chr3_4:68950561-68950580 Msa0517360:intron 20.0%
!!! TATACTAGGCATTTAATTTA+TGG + chr3_4:68950658-68950677 None:intergenic 20.0%
!! GAATGCATATAAATTAATTG+TGG + chr3_4:68951553-68951572 None:intergenic 20.0%
!! AGAAAAATGTGAATAGAAAT+TGG - chr3_4:68952011-68952030 Msa0517360:intron 20.0%
!! GTTTACTAATAAGAAATTCA+TGG + chr3_4:68952292-68952311 None:intergenic 20.0%
!! TTTAATCTATGATGACAAAT+TGG - chr3_4:68952952-68952971 Msa0517360:intron 20.0%
!! AAATTTCCAAATTTATGAGA+TGG + chr3_4:68953059-68953078 None:intergenic 20.0%
!! TTTCTTAATTGGTATAATTG+TGG - chr3_4:68953948-68953967 Msa0517360:intron 20.0%
!!! TTTTTTTTGGTTCATTTGAT+AGG - chr3_4:68954663-68954682 Msa0517360:intron 20.0%
!! TTTGTTAAATTCAATACTAC+AGG - chr3_4:68954861-68954880 Msa0517360:intron 20.0%
!!! AATAAGTTAGTTCTAGTTAT+AGG + chr3_4:68955226-68955245 None:intergenic 20.0%
!!! GTAATTGTTATTTTTCTAAG+AGG - chr3_4:68955758-68955777 Msa0517360:intron 20.0%
!! TTTACACAATATGCTTATAT+TGG - chr3_4:68956097-68956116 Msa0517360:intron 20.0%
!! GTTCATTTGATAAAGAATAA+AGG - chr3_4:68956640-68956659 Msa0517360:CDS 20.0%
!! AGTGATATACATTTATCATT+TGG - chr3_4:68956667-68956686 Msa0517360:five_prime_UTR 20.0%
! TATAATATCATATGGTTGGT+TGG + chr3_4:68949405-68949424 None:intergenic 25.0%
! CACCAAGATATAATATCATA+TGG + chr3_4:68949413-68949432 None:intergenic 25.0%
! CATATGATATTATATCTTGG+TGG - chr3_4:68949411-68949430 Msa0517360:three_prime_UTR 25.0%
! ATGAATGATTGATGTACATA+TGG + chr3_4:68949462-68949481 None:intergenic 25.0%
! TAAAAAGGTTTGCATAAGAA+GGG - chr3_4:68949575-68949594 Msa0517360:CDS 25.0%
! AATATTGTTACTGGTATTGT+TGG - chr3_4:68949717-68949736 Msa0517360:CDS 25.0%
!! TGGTAACAAACACTTAATTT+TGG - chr3_4:68949737-68949756 Msa0517360:CDS 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr3_4:68949964-68949983 None:intergenic 25.0%
!! ACTATTTGAGTTCAATTGTT+TGG + chr3_4:68950225-68950244 None:intergenic 25.0%
!! TAATTTAAAGTTTGGTTGTG+AGG + chr3_4:68950328-68950347 None:intergenic 25.0%
!! GGTCATAGTAATTTAAAGTT+TGG + chr3_4:68950336-68950355 None:intergenic 25.0%
!!! TTTTTTTTGCGTTAACTCTT+CGG + chr3_4:68950374-68950393 None:intergenic 25.0%
! CTTAAGGTGTATAATAACAT+TGG - chr3_4:68950560-68950579 Msa0517360:intron 25.0%
! TTCCGTCAACAAAAAAAAAA+AGG - chr3_4:68950838-68950857 Msa0517360:intron 25.0%
!!! AGCCTTTTTTTTTTTGTTGA+CGG + chr3_4:68950843-68950862 None:intergenic 25.0%
!! ATAAAATTTAGGGGTCTTAT+AGG - chr3_4:68951018-68951037 Msa0517360:CDS 25.0%
! CTCACACAAATTTCTTAAAT+GGG + chr3_4:68951160-68951179 None:intergenic 25.0%
! TCTCACACAAATTTCTTAAA+TGG + chr3_4:68951161-68951180 None:intergenic 25.0%
! AGAGCTAAATTTCTTTAGTT+TGG - chr3_4:68951336-68951355 Msa0517360:CDS 25.0%
! CAACAAATATTATGAGACAT+TGG - chr3_4:68951507-68951526 Msa0517360:CDS 25.0%
! AATTCATATCCTATCCAATT+AGG + chr3_4:68951982-68952001 None:intergenic 25.0%
! ATGTGAATAGAAATTGGATT+TGG - chr3_4:68952017-68952036 Msa0517360:intron 25.0%
! TTGTTATCACACTTGATATA+TGG - chr3_4:68952731-68952750 Msa0517360:intron 25.0%
! CAAATTTATGAGATGGTTTA+AGG + chr3_4:68953052-68953071 None:intergenic 25.0%
! CTTAAACCATCTCATAAATT+TGG - chr3_4:68953050-68953069 Msa0517360:intron 25.0%
!! ATAGATATTAATACCCCTTT+TGG - chr3_4:68953328-68953347 Msa0517360:intron 25.0%
! TAAAAGTGATTCTTATGAGT+AGG + chr3_4:68953401-68953420 None:intergenic 25.0%
! GAATGTGAATTGATTATGTT+TGG + chr3_4:68953435-68953454 None:intergenic 25.0%
!!! TGTATGTTATTTTTCATGCA+TGG - chr3_4:68953585-68953604 Msa0517360:intron 25.0%
! ATCATAATCATAGATTCTGT+CGG + chr3_4:68953717-68953736 None:intergenic 25.0%
! TATGATGTCTATAATGATCT+TGG - chr3_4:68953731-68953750 Msa0517360:intron 25.0%
! ATAGTCACTGATATAAATCT+TGG - chr3_4:68954190-68954209 Msa0517360:CDS 25.0%
! TAGTCACTGATATAAATCTT+GGG - chr3_4:68954191-68954210 Msa0517360:CDS 25.0%
! ATAGAAGCAATTTACAAAGA+AGG - chr3_4:68954232-68954251 Msa0517360:CDS 25.0%
! TAAACTTAACTGTCATGAAA+TGG - chr3_4:68954415-68954434 Msa0517360:CDS 25.0%
!! ATGAAATGGAAATTCTTTTC+TGG - chr3_4:68954429-68954448 Msa0517360:intron 25.0%
! AACATCTTATACAACCTAAT+TGG + chr3_4:68955195-68955214 None:intergenic 25.0%
! TATATGTTAATTGTGTTTGC+AGG - chr3_4:68955245-68955264 Msa0517360:intron 25.0%
! TAATCTAAAAATTGGATGCA+TGG + chr3_4:68955329-68955348 None:intergenic 25.0%
! GGATGCAATAATCTAAAAAT+TGG + chr3_4:68955337-68955356 None:intergenic 25.0%
! TCGAAAAGAATGATATTTCA+AGG + chr3_4:68955426-68955445 None:intergenic 25.0%
!! CTTTTCGAATAAGTATACAA+TGG - chr3_4:68955438-68955457 Msa0517360:intron 25.0%
! TTCCAAATGATCTTATCAAT+AGG - chr3_4:68955512-68955531 Msa0517360:intron 25.0%
! TACCTATTGATAAGATCATT+TGG + chr3_4:68955517-68955536 None:intergenic 25.0%
! AATTGAATGTAAACATGTCT+TGG - chr3_4:68955645-68955664 Msa0517360:intron 25.0%
! ACATAAGTTAATATTCAACG+TGG + chr3_4:68955740-68955759 None:intergenic 25.0%
!!! TGTTATTTTTCTAAGAGGAA+TGG - chr3_4:68955763-68955782 Msa0517360:intron 25.0%
!!! TCATTTTGTGTTTTGAGATT+TGG + chr3_4:68956016-68956035 None:intergenic 25.0%
!! AAAGTTGCTTGAATTTTTGA+TGG + chr3_4:68956238-68956257 None:intergenic 25.0%
! AGGAATTTGAAGAATAGAAA+TGG - chr3_4:68956427-68956446 Msa0517360:CDS 25.0%
! TTTAAATGGATATGCTGTAT+GGG + chr3_4:68956519-68956538 None:intergenic 25.0%
! ATATCCATTTAAACCTAGTT+TGG - chr3_4:68956526-68956545 Msa0517360:CDS 25.0%
! TATTTTCTCCGTCCTATAAT+TGG - chr3_4:68949496-68949515 Msa0517360:three_prime_UTR 30.0%
! TTTTTCCTCCAATTATAGGA+CGG + chr3_4:68949507-68949526 None:intergenic 30.0%
CTCACAACAATAGTACTAAT+TGG - chr3_4:68949532-68949551 Msa0517360:exon 30.0%
GAAATCTTCTCTAGGTAAAA+AGG - chr3_4:68949560-68949579 Msa0517360:CDS 30.0%
GTAAAAAGGTTTGCATAAGA+AGG - chr3_4:68949574-68949593 Msa0517360:CDS 30.0%
AAAAAGGTTTGCATAAGAAG+GGG - chr3_4:68949576-68949595 Msa0517360:CDS 30.0%
TAGTTGTATAAGAGTAGTGA+TGG - chr3_4:68949605-68949624 Msa0517360:CDS 30.0%
CAGTAACAATATTCTTGATG+AGG + chr3_4:68949710-68949729 None:intergenic 30.0%
CTCATCAAGAATATTGTTAC+TGG - chr3_4:68949708-68949727 Msa0517360:CDS 30.0%
CTCTTAAATTATACACCATC+CGG + chr3_4:68950095-68950114 None:intergenic 30.0%
TCTGATCTCAATATCTCTTA+AGG - chr3_4:68950544-68950563 Msa0517360:intron 30.0%
AAAAAAAAGGCTCACAAAAG+TGG - chr3_4:68950851-68950870 Msa0517360:intron 30.0%
AAAAAAAGGCTCACAAAAGT+GGG - chr3_4:68950852-68950871 Msa0517360:intron 30.0%
ATGGTCTAACTAAGATCATT+TGG + chr3_4:68950960-68950979 None:intergenic 30.0%
CATCGGGAAGATAAAATTTA+GGG - chr3_4:68951008-68951027 Msa0517360:CDS 30.0%
ATCGGGAAGATAAAATTTAG+GGG - chr3_4:68951009-68951028 Msa0517360:CDS 30.0%
TAACTCTTAAGTAAGACCAT+GGG + chr3_4:68951045-68951064 None:intergenic 30.0%
TTAACTCTTAAGTAAGACCA+TGG + chr3_4:68951046-68951065 None:intergenic 30.0%
GAATCAGTTGTCAACATTTA+AGG - chr3_4:68951309-68951328 Msa0517360:CDS 30.0%
TACCAAAATGTGAACTCATT+TGG - chr3_4:68951368-68951387 Msa0517360:CDS 30.0%
! AACCAAATGAGTTCACATTT+TGG + chr3_4:68951373-68951392 None:intergenic 30.0%
AAAATGTGAACTCATTTGGT+TGG - chr3_4:68951372-68951391 Msa0517360:intron 30.0%
TAGTCGATCAAAATTAGTAG+CGG + chr3_4:68951441-68951460 None:intergenic 30.0%
TTTGCTTCTTCATGCAAATA+AGG + chr3_4:68951619-68951638 None:intergenic 30.0%
AACAGAGAAAAAAGAGAAAG+AGG - chr3_4:68951675-68951694 Msa0517360:intron 30.0%
!! TTTGAGTTACCAGCAAATTT+TGG - chr3_4:68951715-68951734 Msa0517360:CDS 30.0%
CTAAAGAATATAGTCCTTGA+TGG - chr3_4:68951787-68951806 Msa0517360:CDS 30.0%
GAATCCATGATTGACAATTA+AGG + chr3_4:68951834-68951853 None:intergenic 30.0%
ATGAAGAAAACTCTCTTTGT+AGG + chr3_4:68951874-68951893 None:intergenic 30.0%
! GAGAGTTTTCTTCATTAACA+AGG - chr3_4:68951879-68951898 Msa0517360:CDS 30.0%
GGTAACGATGTTAATACATT+AGG - chr3_4:68951900-68951919 Msa0517360:CDS 30.0%
TGAATAGAAATTGGATTTGG+TGG - chr3_4:68952020-68952039 Msa0517360:intron 30.0%
ACCTATTGAACATACAAGAT+GGG + chr3_4:68952387-68952406 None:intergenic 30.0%
AACCTATTGAACATACAAGA+TGG + chr3_4:68952388-68952407 None:intergenic 30.0%
!!! AGATTTTTTACCGCTAAACA+AGG - chr3_4:68952416-68952435 Msa0517360:CDS 30.0%
! TTTTTGGATTACCACGATAT+AGG + chr3_4:68952455-68952474 None:intergenic 30.0%
!!! CAATGGCTTGATAGTTTTTT+TGG + chr3_4:68952471-68952490 None:intergenic 30.0%
! ATCAACTAGTCTATCAACAA+TGG + chr3_4:68952488-68952507 None:intergenic 30.0%
TCTTGTGTGTTTCAAATGTT+GGG + chr3_4:68952539-68952558 None:intergenic 30.0%
TTCTTGTGTGTTTCAAATGT+TGG + chr3_4:68952540-68952559 None:intergenic 30.0%
!!! AAAGTTTTGAGCAAACTCAA+AGG + chr3_4:68952675-68952694 None:intergenic 30.0%
! TGAGTTTGCTCAAAACTTTA+AGG - chr3_4:68952676-68952695 Msa0517360:intron 30.0%
!! ACTTTAAGGCATTTGACATA+TGG - chr3_4:68952690-68952709 Msa0517360:intron 30.0%
! TCAACATTTTCTTAGGTGTT+TGG - chr3_4:68952825-68952844 Msa0517360:intron 30.0%
GTAATAGAAAACTGAGTCAT+GGG + chr3_4:68952992-68953011 None:intergenic 30.0%
TGAACGCAAAATTACCAAAA+GGG + chr3_4:68953345-68953364 None:intergenic 30.0%
TTGAACGCAAAATTACCAAA+AGG + chr3_4:68953346-68953365 None:intergenic 30.0%
!! GAGTTTGAGAGAATTGATTT+TGG + chr3_4:68953471-68953490 None:intergenic 30.0%
ATGAGCTAATAGAACTAAGA+GGG - chr3_4:68953666-68953685 Msa0517360:intron 30.0%
! TCTAGGATATGGATATTGTT+TGG + chr3_4:68953804-68953823 None:intergenic 30.0%
AACAATATCCATATCCTAGA+CGG - chr3_4:68953804-68953823 Msa0517360:intron 30.0%
TACTCCTTTCTTCATATAGT+GGG + chr3_4:68954057-68954076 None:intergenic 30.0%
TTGGAGAAAATTAGAGTCAT+TGG + chr3_4:68954281-68954300 None:intergenic 30.0%
!!! AGAACTTTGGAATGAGTTTT+TGG + chr3_4:68954300-68954319 None:intergenic 30.0%
ACTCATTCCAAAGTTCTTTA+AGG - chr3_4:68954303-68954322 Msa0517360:CDS 30.0%
TTAGCATCCTTAAAGAACTT+TGG + chr3_4:68954313-68954332 None:intergenic 30.0%
TGTTTGAACTTACTCTTGTA+TGG + chr3_4:68954373-68954392 None:intergenic 30.0%
!!! ATTCTTTTGGTTTTCAGATG+TGG - chr3_4:68954496-68954515 Msa0517360:intron 30.0%
TAACCAATTGGATGCTATAT+GGG + chr3_4:68954553-68954572 None:intergenic 30.0%
TTAACCAATTGGATGCTATA+TGG + chr3_4:68954554-68954573 None:intergenic 30.0%
ATATAGCATCCAATTGGTTA+AGG - chr3_4:68954553-68954572 Msa0517360:intron 30.0%
!! GCATCCAATTTACTTTTCAA+AGG + chr3_4:68954694-68954713 None:intergenic 30.0%
CTATTCTTTCTTACTAGTGA+AGG - chr3_4:68954991-68955010 Msa0517360:intron 30.0%
ATATTGGTGGAATCAGAATT+AGG + chr3_4:68955093-68955112 None:intergenic 30.0%
CTGTGTGTTGCAATTATAAT+AGG + chr3_4:68955295-68955314 None:intergenic 30.0%
AAGTTCTCATTAATGCAAGT+GGG - chr3_4:68955398-68955417 Msa0517360:intron 30.0%
ATGTAAACATGTCTTGGTTT+CGG - chr3_4:68955651-68955670 Msa0517360:intron 30.0%
CAATGATGGTCTTCTAATAT+GGG - chr3_4:68955847-68955866 Msa0517360:intron 30.0%
TATGGGATGCAATTAAACAA+TGG - chr3_4:68955864-68955883 Msa0517360:intron 30.0%
!!! ATTTTTTTCCTAGCAATGGT+TGG + chr3_4:68956139-68956158 None:intergenic 30.0%
ACAAAAAATAGAGCCATCTT+GGG - chr3_4:68956315-68956334 Msa0517360:CDS 30.0%
!! CAGCTTTTGAAAAGTTACAA+AGG - chr3_4:68956359-68956378 Msa0517360:CDS 30.0%
AGGAGATTGAATGAAATTGA+AGG - chr3_4:68956379-68956398 Msa0517360:CDS 30.0%
!! TTGAAGGTATTATAGACTCA+AGG - chr3_4:68956395-68956414 Msa0517360:CDS 30.0%
!! AATGGCTTTAAAGACTCATA+AGG + chr3_4:68956466-68956485 None:intergenic 30.0%
!!! AGTCTTTAAAGCCATTTTCA+GGG - chr3_4:68956470-68956489 Msa0517360:CDS 30.0%
GTTTAAATGGATATGCTGTA+TGG + chr3_4:68956520-68956539 None:intergenic 30.0%
TGTACCAAACTAGGTTTAAA+TGG + chr3_4:68956533-68956552 None:intergenic 30.0%
ATCTAGCACATAGAAAATGT+AGG + chr3_4:68956579-68956598 None:intergenic 30.0%
TCTATGTGCTAGATTTGTAT+TGG - chr3_4:68956585-68956604 Msa0517360:CDS 30.0%
! ATATCATATGGTTGGTTGGT+TGG + chr3_4:68949401-68949420 None:intergenic 35.0%
TGGTTCTTGAAATCTTCTCT+AGG - chr3_4:68949552-68949571 Msa0517360:CDS 35.0%
ATAAGAGTAGTGATGGCAAA+AGG - chr3_4:68949612-68949631 Msa0517360:CDS 35.0%
! AAAAGCTTTAGTGAGTGTGA+AGG - chr3_4:68949671-68949690 Msa0517360:CDS 35.0%
TGCTTATATTTATGACCGGA+TGG - chr3_4:68950077-68950096 Msa0517360:CDS 35.0%
TAAGTTGTGACATGGAAAGA+TGG + chr3_4:68950145-68950164 None:intergenic 35.0%
! CTGATAGTTAAGTTGTGACA+TGG + chr3_4:68950153-68950172 None:intergenic 35.0%
TTTGGTTGTGAGGTAAGAAT+AGG + chr3_4:68950318-68950337 None:intergenic 35.0%
ATAATAACATTGGGTGTGCA+AGG - chr3_4:68950570-68950589 Msa0517360:intron 35.0%
CTTAGTTAGACCATTTCCAA+TGG - chr3_4:68950966-68950985 Msa0517360:CDS 35.0%
! CCTAAATTTTATCTTCCCGA+TGG + chr3_4:68951010-68951029 None:intergenic 35.0%
CCATCGGGAAGATAAAATTT+AGG - chr3_4:68951007-68951026 Msa0517360:CDS 35.0%
TGTGGATCTCACTTAAGAAT+GGG + chr3_4:68951072-68951091 None:intergenic 35.0%
ATGTGGATCTCACTTAAGAA+TGG + chr3_4:68951073-68951092 None:intergenic 35.0%
! TGACAACTGATTCATGACAA+TGG + chr3_4:68951302-68951321 None:intergenic 35.0%
!! ATTGAGAGAAGTATTCTCCA+AGG + chr3_4:68951408-68951427 None:intergenic 35.0%
! AAATTAGTAGCGGGAAGAAA+CGG + chr3_4:68951431-68951450 None:intergenic 35.0%
AGTCGATCAAAATTAGTAGC+GGG + chr3_4:68951440-68951459 None:intergenic 35.0%
TCTTCATGCAAATAAGGTTG+CGG + chr3_4:68951613-68951632 None:intergenic 35.0%
CATGAAGAAGCAAACTCAAA+GGG - chr3_4:68951625-68951644 Msa0517360:intron 35.0%
TCAAAGGGAGAGACAATAAA+AGG - chr3_4:68951640-68951659 Msa0517360:intron 35.0%
!!! TTTTTTCTCTGTTTCGTGTG+CGG + chr3_4:68951668-68951687 None:intergenic 35.0%
!! ACCAGCAAATTTTGGAAATG+TGG - chr3_4:68951723-68951742 Msa0517360:CDS 35.0%
!! CCAGCAAATTTTGGAAATGT+GGG - chr3_4:68951724-68951743 Msa0517360:CDS 35.0%
ATTGACAATTAAGGTGGACA+GGG + chr3_4:68951825-68951844 None:intergenic 35.0%
TCCACCTTAATTGTCAATCA+TGG - chr3_4:68951827-68951846 Msa0517360:CDS 35.0%
TCCATGATTGACAATTAAGG+TGG + chr3_4:68951831-68951850 None:intergenic 35.0%
!! TTTGTAGGAGTATCATGCTT+AGG + chr3_4:68951859-68951878 None:intergenic 35.0%
ACTAACACACTCATGCATAT+GGG - chr3_4:68951931-68951950 Msa0517360:CDS 35.0%
! TGGGTCGCAATAAATTTTGT+TGG - chr3_4:68951950-68951969 Msa0517360:CDS 35.0%
! GGGTCGCAATAAATTTTGTT+GGG - chr3_4:68951951-68951970 Msa0517360:CDS 35.0%
CATATCCTATCCAATTAGGT+GGG + chr3_4:68951978-68951997 None:intergenic 35.0%
TCATATCCTATCCAATTAGG+TGG + chr3_4:68951979-68951998 None:intergenic 35.0%
GATCTTAATCCAACAACTAC+TGG - chr3_4:68952160-68952179 Msa0517360:intron 35.0%
TCTTGTGTACGGAGAAAATT+CGG - chr3_4:68952347-68952366 Msa0517360:CDS 35.0%
ACCCATCTTGTATGTTCAAT+AGG - chr3_4:68952383-68952402 Msa0517360:CDS 35.0%
!!! TTTTTTACCGCTAAACAAGG+TGG - chr3_4:68952419-68952438 Msa0517360:CDS 35.0%
GAAGTTTCATACCTATATCG+TGG - chr3_4:68952441-68952460 Msa0517360:intron 35.0%
GACTCAACAAGGATATAGTT+GGG + chr3_4:68952607-68952626 None:intergenic 35.0%
! CGCAGTTTCAACATTTTCTT+AGG - chr3_4:68952818-68952837 Msa0517360:intron 35.0%
! GCTGGAAAATGAATCTTTTG+CGG - chr3_4:68952908-68952927 Msa0517360:intron 35.0%
AACTGAGTCATGGGTAATTA+GGG + chr3_4:68952983-68953002 None:intergenic 35.0%
AAACTGAGTCATGGGTAATT+AGG + chr3_4:68952984-68953003 None:intergenic 35.0%
GGTAATAGAAAACTGAGTCA+TGG + chr3_4:68952993-68953012 None:intergenic 35.0%
! TGACTCAGTTTTCTATTACC+AGG - chr3_4:68952993-68953012 Msa0517360:intron 35.0%
GAACGCAAAATTACCAAAAG+GGG + chr3_4:68953344-68953363 None:intergenic 35.0%
!! TCTTATGAGTAGGTGTTGTT+TGG + chr3_4:68953391-68953410 None:intergenic 35.0%
ATATACGTGTGTGTTTGGTA+TGG + chr3_4:68953523-68953542 None:intergenic 35.0%
CAACTATATACGTGTGTGTT+TGG + chr3_4:68953528-68953547 None:intergenic 35.0%
GATGAGCTAATAGAACTAAG+AGG - chr3_4:68953665-68953684 Msa0517360:intron 35.0%
CTAATAGAACTAAGAGGGAA+TGG - chr3_4:68953671-68953690 Msa0517360:intron 35.0%
GTACTCCTTTCTTCATATAG+TGG + chr3_4:68954058-68954077 None:intergenic 35.0%
AATACTTCTGCCGTATCTTT+AGG - chr3_4:68954136-68954155 Msa0517360:intron 35.0%
TGTAGTCAAGCCTAAAGATA+CGG + chr3_4:68954149-68954168 None:intergenic 35.0%
GAGTCATTGGATTCAAGATT+TGG + chr3_4:68954268-68954287 None:intergenic 35.0%
AACTTACTCTTGTATGGTTC+CGG + chr3_4:68954367-68954386 None:intergenic 35.0%
ATCAATGTGAATATGTGCCT+CGG - chr3_4:68954458-68954477 Msa0517360:intron 35.0%
! TTGTAGGGGATAGATTCTTT+TGG - chr3_4:68954483-68954502 Msa0517360:intron 35.0%
! TTTGGTTCATTTGATAGGAG+TGG - chr3_4:68954668-68954687 Msa0517360:intron 35.0%
! GTGGCCTTTGAAAAGTAAAT+TGG - chr3_4:68954687-68954706 Msa0517360:intron 35.0%
AAATTGGATGCCCAAATCTA+TGG - chr3_4:68954703-68954722 Msa0517360:intron 35.0%
!! TCTCTAGTAATTGCTGATTC+TGG + chr3_4:68954733-68954752 None:intergenic 35.0%
!! TCTCTCAGTTTGCTAACATA+TGG + chr3_4:68954937-68954956 None:intergenic 35.0%
ATTGAGGGAACAACACTATA+TGG - chr3_4:68954958-68954977 Msa0517360:intron 35.0%
ATTCTGATTCCACCAATATC+TGG - chr3_4:68955094-68955113 Msa0517360:intron 35.0%
ATGAACAAGAACATGAGCTT+TGG + chr3_4:68955133-68955152 None:intergenic 35.0%
CATGTTCTTGTTCATGATTC+TGG - chr3_4:68955138-68955157 Msa0517360:intron 35.0%
ATCATGAGCTAATAAGCCAT+TGG - chr3_4:68955163-68955182 Msa0517360:intron 35.0%
GAAGTTCTCATTAATGCAAG+TGG - chr3_4:68955397-68955416 Msa0517360:intron 35.0%
CTGTGGCATATGATAATCTT+TGG - chr3_4:68955470-68955489 Msa0517360:intron 35.0%
!! TCTTTGGCAATTTGATTTGC+AGG - chr3_4:68955486-68955505 Msa0517360:intron 35.0%
! CAACGTGGTTTTCAAAAAGA+AGG + chr3_4:68955725-68955744 None:intergenic 35.0%
CCATATTAGAAGACCATCAT+TGG + chr3_4:68955849-68955868 None:intergenic 35.0%
CCAATGATGGTCTTCTAATA+TGG - chr3_4:68955846-68955865 Msa0517360:intron 35.0%
GATTCTATAATGTCTGAGCT+TGG + chr3_4:68955917-68955936 None:intergenic 35.0%
ACATCATTACCACTATAGCT+TGG - chr3_4:68956044-68956063 Msa0517360:intron 35.0%
!! TAGCAATGGTTGGTCTATTA+GGG + chr3_4:68956129-68956148 None:intergenic 35.0%
!!! TGGCATTTTTTTCCTAGCAA+TGG + chr3_4:68956143-68956162 None:intergenic 35.0%
TTTCCCATTCTTCCTTAGTA+GGG + chr3_4:68956174-68956193 None:intergenic 35.0%
! TTTTCCCATTCTTCCTTAGT+AGG + chr3_4:68956175-68956194 None:intergenic 35.0%
GACAAAAAATAGAGCCATCT+TGG - chr3_4:68956314-68956333 Msa0517360:CDS 35.0%
CAAAAAATAGAGCCATCTTG+GGG - chr3_4:68956316-68956335 Msa0517360:CDS 35.0%
GGGTGAGAATTCAACTATAA+AGG - chr3_4:68956336-68956355 Msa0517360:CDS 35.0%
TAGACTCAAGGAATGAAGAT+AGG - chr3_4:68956407-68956426 Msa0517360:CDS 35.0%
TTGAAGAATAGAAATGGAGC+TGG - chr3_4:68956433-68956452 Msa0517360:CDS 35.0%
!!! GAGTCTTTAAAGCCATTTTC+AGG - chr3_4:68956469-68956488 Msa0517360:CDS 35.0%
ACTCTTGTATGTACCAAACT+AGG + chr3_4:68956542-68956561 None:intergenic 35.0%
TTTCTCCGTCCTATAATTGG+AGG - chr3_4:68949499-68949518 Msa0517360:three_prime_UTR 40.0%
TGTATGCAATATACACCCTC+CGG - chr3_4:68949942-68949961 Msa0517360:CDS 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr3_4:68949960-68949979 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr3_4:68949961-68949980 None:intergenic 40.0%
TTGTGACATGGAAAGATGGA+GGG + chr3_4:68950141-68950160 None:intergenic 40.0%
TCTCACAAACGATTCGTCAT+TGG + chr3_4:68950260-68950279 None:intergenic 40.0%
! TACTATGACCCTTTTCCGTT+AGG - chr3_4:68950346-68950365 Msa0517360:intron 40.0%
GTTAACTCTTCGGTTCCTAA+CGG + chr3_4:68950364-68950383 None:intergenic 40.0%
AGTTAGACCATTTCCAATGG+AGG - chr3_4:68950969-68950988 Msa0517360:CDS 40.0%
GTGGATCTCACTTAAGAATG+GGG + chr3_4:68951071-68951090 None:intergenic 40.0%
! CAACTGATTCATGACAATGG+TGG + chr3_4:68951299-68951318 None:intergenic 40.0%
TTCATGCAAATAAGGTTGCG+GGG + chr3_4:68951611-68951630 None:intergenic 40.0%
CTTCATGCAAATAAGGTTGC+GGG + chr3_4:68951612-68951631 None:intergenic 40.0%
GCATGAAGAAGCAAACTCAA+AGG - chr3_4:68951624-68951643 Msa0517360:intron 40.0%
CCCACATTTCCAAAATTTGC+TGG + chr3_4:68951727-68951746 None:intergenic 40.0%
GATTGACAATTAAGGTGGAC+AGG + chr3_4:68951826-68951845 None:intergenic 40.0%
CACTAACACACTCATGCATA+TGG - chr3_4:68951930-68951949 Msa0517360:CDS 40.0%
AACAATCACCGATGTTTGGA+TGG + chr3_4:68952059-68952078 None:intergenic 40.0%
GATCAACAATCACCGATGTT+TGG + chr3_4:68952063-68952082 None:intergenic 40.0%
GATTGTTGATCTCGCACAAA+TGG - chr3_4:68952072-68952091 Msa0517360:intron 40.0%
GACTGCCAAATTGTTAACTC+CGG - chr3_4:68952188-68952207 Msa0517360:intron 40.0%
ATCTGCCGGAGTTAACAATT+TGG + chr3_4:68952196-68952215 None:intergenic 40.0%
AACTCTTAAGCAAGCAAGTC+AGG - chr3_4:68952309-68952328 Msa0517360:CDS 40.0%
ACTCTTAAGCAAGCAAGTCA+GGG - chr3_4:68952310-68952329 Msa0517360:CDS 40.0%
!! CGAATACTGACTCTTGTGTA+CGG - chr3_4:68952336-68952355 Msa0517360:CDS 40.0%
GAAAATTCGGTTGAGATGAG+AGG - chr3_4:68952360-68952379 Msa0517360:CDS 40.0%
! GAAACTTCCACCTTGTTTAG+CGG + chr3_4:68952429-68952448 None:intergenic 40.0%
TATAGTTGGGACTAGGGAAT+GGG + chr3_4:68952594-68952613 None:intergenic 40.0%
ATATAGTTGGGACTAGGGAA+TGG + chr3_4:68952595-68952614 None:intergenic 40.0%
CAAGGATATAGTTGGGACTA+GGG + chr3_4:68952600-68952619 None:intergenic 40.0%
ACAAGGATATAGTTGGGACT+AGG + chr3_4:68952601-68952620 None:intergenic 40.0%
CGACTCAACAAGGATATAGT+TGG + chr3_4:68952608-68952627 None:intergenic 40.0%
GACAATACGTAGTACCTGTT+TGG - chr3_4:68952753-68952772 Msa0517360:intron 40.0%
! TCTAAACTCCGGTTTGAGAT+GGG + chr3_4:68952790-68952809 None:intergenic 40.0%
GGTGTTTGGATAACTGCAAA+CGG - chr3_4:68952839-68952858 Msa0517360:intron 40.0%
GTGTTTGGATAACTGCAAAC+GGG - chr3_4:68952840-68952859 Msa0517360:intron 40.0%
!! TTCCAGCTTTTAAGAAACGC+CGG + chr3_4:68952895-68952914 None:intergenic 40.0%
AGATGGTTTAAGGATCGTTG+TGG + chr3_4:68953042-68953061 None:intergenic 40.0%
!! AATCCACTTGGTGTTTGTGA+TGG + chr3_4:68953629-68953648 None:intergenic 40.0%
CTCAGCTTTCTTAATCCACT+TGG + chr3_4:68953641-68953660 None:intergenic 40.0%
ACCTCAAAAGACCTGTTCTT+GGG - chr3_4:68953774-68953793 Msa0517360:intron 40.0%
TGTATCAGAATGCTTTCGAC+CGG + chr3_4:68953837-68953856 None:intergenic 40.0%
CAGACCCACTATATGAAGAA+AGG - chr3_4:68954050-68954069 Msa0517360:intron 40.0%
ACTTACTCTTGTATGGTTCC+GGG + chr3_4:68954366-68954385 None:intergenic 40.0%
AATATGTGCCTCGGAATTGT+AGG - chr3_4:68954467-68954486 Msa0517360:intron 40.0%
ATATGTGCCTCGGAATTGTA+GGG - chr3_4:68954468-68954487 Msa0517360:intron 40.0%
CAATTGGATGCTATATGGGT+TGG + chr3_4:68954549-68954568 None:intergenic 40.0%
CAACCCATATAGCATCCAAT+TGG - chr3_4:68954547-68954566 Msa0517360:intron 40.0%
ATGTCCATGCCTTAACCAAT+TGG + chr3_4:68954565-68954584 None:intergenic 40.0%
! TTCTGGTGGACCATAGATTT+GGG + chr3_4:68954716-68954735 None:intergenic 40.0%
! ATTCTGGTGGACCATAGATT+TGG + chr3_4:68954717-68954736 None:intergenic 40.0%
!! CTAGTAATTGCTGATTCTGG+TGG + chr3_4:68954730-68954749 None:intergenic 40.0%
AACTTACAGCACAGTTGAAG+AGG - chr3_4:68954774-68954793 Msa0517360:intron 40.0%
TAGCAAACTGAGAGAGATTG+AGG - chr3_4:68954942-68954961 Msa0517360:intron 40.0%
AGCAAACTGAGAGAGATTGA+GGG - chr3_4:68954943-68954962 Msa0517360:intron 40.0%
! ATTCCACCAATATCTGGCTT+TGG - chr3_4:68955100-68955119 Msa0517360:intron 40.0%
ACCTAATTGGTACTCACCAA+TGG + chr3_4:68955182-68955201 None:intergenic 40.0%
GCTAAGAACTCATTGTGTTG+TGG - chr3_4:68955267-68955286 Msa0517360:intron 40.0%
! TCCACATCTGAGATATACCA+TGG - chr3_4:68955354-68955373 Msa0517360:intron 40.0%
TCCATGGTATATCTCAGATG+TGG + chr3_4:68955358-68955377 None:intergenic 40.0%
CGCAACTTTATTGATCTCCA+TGG + chr3_4:68955374-68955393 None:intergenic 40.0%
TACAATGGAGTTAAGCTCTG+TGG - chr3_4:68955453-68955472 Msa0517360:intron 40.0%
CACTAAATCAGACACCAGAT+AGG - chr3_4:68955572-68955591 Msa0517360:intron 40.0%
GTCAGTATTAGTGTCCTATC+TGG + chr3_4:68955589-68955608 None:intergenic 40.0%
!! TTTTCTAAGAGGAATGGCTG+TGG - chr3_4:68955769-68955788 Msa0517360:intron 40.0%
TTCACTCCATGTTGTGCATT+CGG + chr3_4:68955800-68955819 None:intergenic 40.0%
! GACTATCCTTTTGCCAATGA+TGG - chr3_4:68955833-68955852 Msa0517360:intron 40.0%
AGAAGACCATCATTGGCAAA+AGG + chr3_4:68955842-68955861 None:intergenic 40.0%
TGGACAGAAATTCGAACAGT+GGG - chr3_4:68955959-68955978 Msa0517360:intron 40.0%
ACAAATCTGAAGAACCATGG+TGG - chr3_4:68955990-68956009 Msa0517360:intron 40.0%
!! CTAGCAATGGTTGGTCTATT+AGG + chr3_4:68956130-68956149 None:intergenic 40.0%
CTAATAGACCAACCATTGCT+AGG - chr3_4:68956128-68956147 Msa0517360:intron 40.0%
AAGACCCTACTAAGGAAGAA+TGG - chr3_4:68956167-68956186 Msa0517360:intron 40.0%
AGACCCTACTAAGGAAGAAT+GGG - chr3_4:68956168-68956187 Msa0517360:intron 40.0%
!! CATTCCAAAAGTGTTTGCTC+TGG + chr3_4:68956211-68956230 None:intergenic 40.0%
! TCACCAGATGAAGAGTACAT+TGG - chr3_4:68956292-68956311 Msa0517360:CDS 40.0%
TGTCCAATGTACTCTTCATC+TGG + chr3_4:68956298-68956317 None:intergenic 40.0%
AAGGTTTGCATAAGAAGGGG+TGG - chr3_4:68949579-68949598 Msa0517360:CDS 45.0%
GTGAGTGTGAAGGAAAGTGA+TGG - chr3_4:68949681-68949700 Msa0517360:CDS 45.0%
AGTGTGAAGGAAAGTGATGG+TGG - chr3_4:68949684-68949703 Msa0517360:CDS 45.0%
GTTGTGACATGGAAAGATGG+AGG + chr3_4:68950142-68950161 None:intergenic 45.0%
CTTCGGTTCCTAACGGAAAA+GGG + chr3_4:68950357-68950376 None:intergenic 45.0%
TCTTCGGTTCCTAACGGAAA+AGG + chr3_4:68950358-68950377 None:intergenic 45.0%
GGAGAAATATGATCGGAAGG+TGG + chr3_4:68950502-68950521 None:intergenic 45.0%
AGAGGGGGGAGAAATATGAT+CGG + chr3_4:68950509-68950528 None:intergenic 45.0%
AGCGATAGACAAAGAGAGAG+GGG + chr3_4:68950525-68950544 None:intergenic 45.0%
GAGCGATAGACAAAGAGAGA+GGG + chr3_4:68950526-68950545 None:intergenic 45.0%
AGAGCGATAGACAAAGAGAG+AGG + chr3_4:68950527-68950546 None:intergenic 45.0%
TCAGGATCCTCCATTGGAAA+TGG + chr3_4:68950979-68950998 None:intergenic 45.0%
ATTTGTGTGAGACGCTGAGT+TGG - chr3_4:68951169-68951188 Msa0517360:CDS 45.0%
GGAGGGATTGAGTGCTTATT+AGG - chr3_4:68951190-68951209 Msa0517360:intron 45.0%
!! TGGTTGGTCTCTTGAAACCT+TGG - chr3_4:68951388-68951407 Msa0517360:intron 45.0%
!!! TGGAAATGTGGGTGCTGTTT+TGG - chr3_4:68951735-68951754 Msa0517360:CDS 45.0%
TTTGTTGGGACCCACCTAAT+TGG - chr3_4:68951965-68951984 Msa0517360:CDS 45.0%
GTCACATGCCATCCAAACAT+CGG - chr3_4:68952048-68952067 Msa0517360:intron 45.0%
AGTCACACACCAGTAGTTGT+TGG + chr3_4:68952172-68952191 None:intergenic 45.0%
CAACACGAATCTAGATCTGC+CGG + chr3_4:68952210-68952229 None:intergenic 45.0%
CTCTTAAGCAAGCAAGTCAG+GGG - chr3_4:68952311-68952330 Msa0517360:CDS 45.0%
! AGCGTTTTCCCATCTCAAAC+CGG - chr3_4:68952779-68952798 Msa0517360:intron 45.0%
! CTCTAAACTCCGGTTTGAGA+TGG + chr3_4:68952791-68952810 None:intergenic 45.0%
CATCTCAAACCGGAGTTTAG+AGG - chr3_4:68952789-68952808 Msa0517360:intron 45.0%
AAACGGGATTCTACCAAACG+TGG - chr3_4:68952856-68952875 Msa0517360:intron 45.0%
!! TTTTAAGAAACGCCGGTTGG+GGG + chr3_4:68952888-68952907 None:intergenic 45.0%
!! CTTTTAAGAAACGCCGGTTG+GGG + chr3_4:68952889-68952908 None:intergenic 45.0%
!! GCTTTTAAGAAACGCCGGTT+GGG + chr3_4:68952890-68952909 None:intergenic 45.0%
!! AGCTTTTAAGAAACGCCGGT+TGG + chr3_4:68952891-68952910 None:intergenic 45.0%
AACCGGCGTTTCTTAAAAGC+TGG - chr3_4:68952890-68952909 Msa0517360:intron 45.0%
! CTTTTGCGGCAACTAAAAGC+TGG - chr3_4:68952922-68952941 Msa0517360:intron 45.0%
GCTATTGAAACAGAGGAACC+TGG + chr3_4:68953014-68953033 None:intergenic 45.0%
! GGCTTGTGCTATTGAAACAG+AGG + chr3_4:68953021-68953040 None:intergenic 45.0%
TACGTGTGTGTTTGGTATGG+CGG + chr3_4:68953520-68953539 None:intergenic 45.0%
TTGCCATCACAAACACCAAG+TGG - chr3_4:68953623-68953642 Msa0517360:intron 45.0%
GAACTAAGAGGGAATGGAGA+AGG - chr3_4:68953677-68953696 Msa0517360:intron 45.0%
!!! AACAGGTCTTTTGAGGTCAG+CGG + chr3_4:68953771-68953790 None:intergenic 45.0%
GACCTCAAAAGACCTGTTCT+TGG - chr3_4:68953773-68953792 Msa0517360:intron 45.0%
CCTCAAAAGACCTGTTCTTG+GGG - chr3_4:68953775-68953794 Msa0517360:intron 45.0%
CTCAAAAGACCTGTTCTTGG+GGG - chr3_4:68953776-68953795 Msa0517360:intron 45.0%
!! GGTCGAAAGCATTCTGATAC+AGG - chr3_4:68953836-68953855 Msa0517360:intron 45.0%
CTTACTCTTGTATGGTTCCG+GGG + chr3_4:68954365-68954384 None:intergenic 45.0%
TATGTGCCTCGGAATTGTAG+GGG - chr3_4:68954469-68954488 Msa0517360:intron 45.0%
ATCTATCCCCTACAATTCCG+AGG + chr3_4:68954478-68954497 None:intergenic 45.0%
GGAATTTGCCAGAGAGACTT+TGG - chr3_4:68954517-68954536 Msa0517360:intron 45.0%
GCATCCAATTGGTTAAGGCA+TGG - chr3_4:68954558-68954577 Msa0517360:intron 45.0%
CTAGTGAGCTCAATAGCTAG+TGG + chr3_4:68955027-68955046 None:intergenic 45.0%
CTCACTAGACCACCTATTGA+TGG - chr3_4:68955039-68955058 Msa0517360:intron 45.0%
! TAGACCACCTATTGATGGCA+AGG - chr3_4:68955044-68955063 Msa0517360:intron 45.0%
CATTGTGCCTTGCCATCAAT+AGG + chr3_4:68955054-68955073 None:intergenic 45.0%
! CTATTGATGGCAAGGCACAA+TGG - chr3_4:68955052-68955071 Msa0517360:intron 45.0%
AAGCCTCCAAAGCCAGATAT+TGG + chr3_4:68955109-68955128 None:intergenic 45.0%
GCCATTGGTGAGTACCAATT+AGG - chr3_4:68955178-68955197 Msa0517360:intron 45.0%
TTTCGGACACAGACATGTGT+CGG - chr3_4:68955668-68955687 Msa0517360:intron 45.0%
GAAGATCCGAATGCACAACA+TGG - chr3_4:68955791-68955810 Msa0517360:intron 45.0%
GAATTTCTGTCCACCATGCT+TGG + chr3_4:68955952-68955971 None:intergenic 45.0%
GTGGACAGAAATTCGAACAG+TGG - chr3_4:68955958-68955977 Msa0517360:intron 45.0%
AATTCGAACAGTGGGACATG+CGG - chr3_4:68955967-68955986 Msa0517360:intron 45.0%
CGGACAAATCTGAAGAACCA+TGG - chr3_4:68955987-68956006 Msa0517360:intron 45.0%
!!! GTTTTGAGATTTGGCCACCA+TGG + chr3_4:68956007-68956026 None:intergenic 45.0%
AGATGCTGTCCAAGCTATAG+TGG + chr3_4:68956056-68956075 None:intergenic 45.0%
TCCTTAGTAGGGTCTTCTGT+TGG + chr3_4:68956163-68956182 None:intergenic 45.0%
!! CCAAAAGTGTTTGCTCTGGT+TGG + chr3_4:68956207-68956226 None:intergenic 45.0%
! CCAACCAGAGCAAACACTTT+TGG - chr3_4:68956204-68956223 Msa0517360:intron 45.0%
GTTGAATTCTCACCCCAAGA+TGG + chr3_4:68956331-68956350 None:intergenic 45.0%
!! TTAAAGCCATTTTCAGGGCC+TGG - chr3_4:68956475-68956494 Msa0517360:CDS 45.0%
!!! TTTTTAATATTAAAAAAATG+TGG + chr3_4:68951090-68951109 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAAACT+AGG + chr3_4:68954651-68954670 None:intergenic 5.0%
!!! TAGTTTTTTTTTTTTTTTTT+TGG - chr3_4:68954650-68954669 Msa0517360:intron 5.0%
GGGGGAGAAATATGATCGGA+AGG + chr3_4:68950505-68950524 None:intergenic 50.0%
CGATAGACAAAGAGAGAGGG+GGG + chr3_4:68950523-68950542 None:intergenic 50.0%
GCGATAGACAAAGAGAGAGG+GGG + chr3_4:68950524-68950543 None:intergenic 50.0%
TACGTGTCAGGATCCTCCAT+TGG + chr3_4:68950985-68951004 None:intergenic 50.0%
GATCCTGACACGTACTCCAT+CGG - chr3_4:68950991-68951010 Msa0517360:CDS 50.0%
ATCCTGACACGTACTCCATC+GGG - chr3_4:68950992-68951011 Msa0517360:CDS 50.0%
! TAGGGGTCTTATAGGACCCA+TGG - chr3_4:68951026-68951045 Msa0517360:CDS 50.0%
! GTCCTTGATGGTTTCCCTGA+TGG - chr3_4:68951799-68951818 Msa0517360:CDS 50.0%
TGGGACCCACCTAATTGGAT+AGG - chr3_4:68951970-68951989 Msa0517360:CDS 50.0%
CGGCAGATCTAGATTCGTGT+TGG - chr3_4:68952208-68952227 Msa0517360:intron 50.0%
TCGTGAGTCACGACTCAACA+AGG + chr3_4:68952618-68952637 None:intergenic 50.0%
TTGTTGAGTCGTGACTCACG+AGG - chr3_4:68952617-68952636 Msa0517360:intron 50.0%
GACTCACGAGGAGAGTCTTA+CGG - chr3_4:68952629-68952648 Msa0517360:intron 50.0%
AAGGTCGATGTGATGATCCC+AGG + chr3_4:68952656-68952675 None:intergenic 50.0%
GGGAAAACGCTATGCCAAAC+AGG + chr3_4:68952770-68952789 None:intergenic 50.0%
GCGTTTCAGCCTCTAAACTC+CGG + chr3_4:68952801-68952820 None:intergenic 50.0%
GCGGCAACTAAAAGCTGGTT+TGG - chr3_4:68952927-68952946 Msa0517360:intron 50.0%
TGTGTGTTTGGTATGGCGGT+GGG + chr3_4:68953516-68953535 None:intergenic 50.0%
TTGAGGTCAGCGGTTATGTC+AGG + chr3_4:68953761-68953780 None:intergenic 50.0%
! CCCCAAGAACAGGTCTTTTG+AGG + chr3_4:68953778-68953797 None:intergenic 50.0%
CTTCTATGTTCCTCGTGACG+AGG - chr3_4:68954084-68954103 Msa0517360:intron 50.0%
TTTGCCAGAGAGACTTTGGC+TGG - chr3_4:68954521-68954540 Msa0517360:intron 50.0%
TGTGCCTTGCCATCAATAGG+TGG + chr3_4:68955051-68955070 None:intergenic 50.0%
CCTCCAAAGCCAGATATTGG+TGG + chr3_4:68955106-68955125 None:intergenic 50.0%
!! CCACCAATATCTGGCTTTGG+AGG - chr3_4:68955103-68955122 Msa0517360:intron 50.0%
CTGATCAAGAGCTCCAAGCA+TGG - chr3_4:68955936-68955955 Msa0517360:intron 50.0%
ATCAAGAGCTCCAAGCATGG+TGG - chr3_4:68955939-68955958 Msa0517360:intron 50.0%
GCCAACAGAAGACCCTACTA+AGG - chr3_4:68956159-68956178 Msa0517360:intron 50.0%
! ACTCCTTTTCCAGTGACTCC+AGG + chr3_4:68956496-68956515 None:intergenic 50.0%
TTCCCGATGGAGTACGTGTC+AGG + chr3_4:68950997-68951016 None:intergenic 55.0%
! TGTGTGAGACGCTGAGTTGG+AGG - chr3_4:68951172-68951191 Msa0517360:CDS 55.0%
! GTGTGAGACGCTGAGTTGGA+GGG - chr3_4:68951173-68951192 Msa0517360:CDS 55.0%
GGCCATCAGGGAAACCATCA+AGG + chr3_4:68951804-68951823 None:intergenic 55.0%
TAAGGTGGACAGGGCCATCA+GGG + chr3_4:68951816-68951835 None:intergenic 55.0%
TTAAGGTGGACAGGGCCATC+AGG + chr3_4:68951817-68951836 None:intergenic 55.0%
CTAGGGAATGGGAGGAGATG+TGG + chr3_4:68952583-68952602 None:intergenic 55.0%
AGTTGGGACTAGGGAATGGG+AGG + chr3_4:68952591-68952610 None:intergenic 55.0%
GAGGAGAGTCTTACGGTCCT+GGG - chr3_4:68952636-68952655 Msa0517360:intron 55.0%
TTGGGGGCTAGATCCACGTT+TGG + chr3_4:68952872-68952891 None:intergenic 55.0%
GTGTGTTTGGTATGGCGGTG+GGG + chr3_4:68953515-68953534 None:intergenic 55.0%
GTGTGTGTTTGGTATGGCGG+TGG + chr3_4:68953517-68953536 None:intergenic 55.0%
!! TGTTTGGTGCCCCCAAGAAC+AGG + chr3_4:68953788-68953807 None:intergenic 55.0%
! GTGCGACACCGTCTAGGATA+TGG + chr3_4:68953815-68953834 None:intergenic 55.0%
!! TATCCTAGACGGTGTCGCAC+CGG - chr3_4:68953815-68953834 Msa0517360:intron 55.0%
TCAGCAAATGCCTCGTCACG+AGG + chr3_4:68954097-68954116 None:intergenic 55.0%
GTGACTCCAGGCCCTGAAAA+TGG + chr3_4:68956484-68956503 None:intergenic 55.0%
!! TTTTCAGGGCCTGGAGTCAC+TGG - chr3_4:68956484-68956503 Msa0517360:CDS 55.0%
CGAGGAGAGTCTTACGGTCC+TGG - chr3_4:68952635-68952654 Msa0517360:intron 60.0%
ACGTGGATCTAGCCCCCAAC+CGG - chr3_4:68952873-68952892 Msa0517360:intron 60.0%
GGCACCAGCCAAAGTCTCTC+TGG + chr3_4:68954528-68954547 None:intergenic 60.0%
GGGCCTGGAGTCACTGGAAA+AGG - chr3_4:68956490-68956509 Msa0517360:CDS 60.0%
CGACCGGTGCGACACCGTCT+AGG + chr3_4:68953821-68953840 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 68949359 68956716 68949359 ID=Msa0517360;Name=Msa0517360
chr3_4 mRNA 68949359 68956716 68949359 ID=Msa0517360-mRNA-1;Parent=Msa0517360;Name=Msa0517360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=55|0.75|0.77|1|0.87|0.88|9|179|903
chr3_4 exon 68949359 68950297 68949359 ID=Msa0517360-mRNA-1:exon:18313;Parent=Msa0517360-mRNA-1
chr3_4 exon 68950626 68950808 68950626 ID=Msa0517360-mRNA-1:exon:18312;Parent=Msa0517360-mRNA-1
chr3_4 exon 68950891 68951192 68950891 ID=Msa0517360-mRNA-1:exon:18311;Parent=Msa0517360-mRNA-1
chr3_4 exon 68951280 68951390 68951280 ID=Msa0517360-mRNA-1:exon:18310;Parent=Msa0517360-mRNA-1
chr3_4 exon 68951441 68951586 68951441 ID=Msa0517360-mRNA-1:exon:18309;Parent=Msa0517360-mRNA-1
chr3_4 exon 68951696 68952022 68951696 ID=Msa0517360-mRNA-1:exon:18308;Parent=Msa0517360-mRNA-1
chr3_4 exon 68952218 68952458 68952218 ID=Msa0517360-mRNA-1:exon:18307;Parent=Msa0517360-mRNA-1
chr3_4 exon 68954175 68954443 68954175 ID=Msa0517360-mRNA-1:exon:18306;Parent=Msa0517360-mRNA-1
chr3_4 exon 68956289 68956716 68956289 ID=Msa0517360-mRNA-1:exon:18305;Parent=Msa0517360-mRNA-1
chr3_4 five_prime_UTR 68956662 68956716 68956662 ID=Msa0517360-mRNA-1:five_prime_utr;Parent=Msa0517360-mRNA-1
chr3_4 CDS 68956289 68956661 68956289 ID=Msa0517360-mRNA-1:cds;Parent=Msa0517360-mRNA-1
chr3_4 CDS 68954175 68954443 68954175 ID=Msa0517360-mRNA-1:cds;Parent=Msa0517360-mRNA-1
chr3_4 CDS 68952218 68952458 68952218 ID=Msa0517360-mRNA-1:cds;Parent=Msa0517360-mRNA-1
chr3_4 CDS 68951696 68952022 68951696 ID=Msa0517360-mRNA-1:cds;Parent=Msa0517360-mRNA-1
chr3_4 CDS 68951441 68951586 68951441 ID=Msa0517360-mRNA-1:cds;Parent=Msa0517360-mRNA-1
chr3_4 CDS 68951280 68951390 68951280 ID=Msa0517360-mRNA-1:cds;Parent=Msa0517360-mRNA-1
chr3_4 CDS 68950891 68951192 68950891 ID=Msa0517360-mRNA-1:cds;Parent=Msa0517360-mRNA-1
chr3_4 CDS 68950626 68950808 68950626 ID=Msa0517360-mRNA-1:cds;Parent=Msa0517360-mRNA-1
chr3_4 CDS 68949538 68950297 68949538 ID=Msa0517360-mRNA-1:cds;Parent=Msa0517360-mRNA-1
chr3_4 three_prime_UTR 68949359 68949537 68949359 ID=Msa0517360-mRNA-1:three_prime_utr;Parent=Msa0517360-mRNA-1
Gene Sequence

>Msa0517360

ATGATATTATATCTTGGTGGAAATATGACATATTTGTTGAAGAAGCCATATGTACATCAATCATTCATCACTAATAGTGCAATATTTTCTCCGTCCTATAATTGGAGGAAAAATATTTCTCACAACAATAGTACTAATTGGTTCTTGAAATCTTCTCTAGGTAAAAAGGTTTGCATAAGAAGGGGTGGTTCTAGTTGTATAAGAGTAGTGATGGCAAAAGGAAGTAGCAGCAGTGACAACAAATCTCATCATAATGTAAAAGCTTTAGTGAGTGTGAAGGAAAGTGATGGTGGCCTCATCAAGAATATTGTTACTGGTATTGTTGGTAACAAACACTTAATTTTGGAGTTAGTCAGTGCTGAGCTTGATCCAAAAGCAAACTCAAAGGGAGAGACAATAAAAGGAACCGCACACGAAACAGAGAAAAAAGAGAAAGAGGTGCAGTATGAAGCAACATTTGAGTTACCAGCAAATTTTGGAAATGTGGGTGCTGTTTTGGTTGAGAATGAACATGACAAAGAGATATTTCTAAAGAATATAGTCCTTGATGGTTTCCCTGATGGCCCTGTCCACCTTAATTGTCAATCATGGATTCAGCCTAAGCATGATACTCCTACAAAGAGAGTTTTCTTCATTAACAAGATGTATTTGCCATCACAAACACCAAGTGGATTAAGAAAGCTGAGAGAAGATGAGCTAATAGAACTAAGAGGGAATGGAGAAGGAGAGCGTAAGAAATCCGACAGAATCTATGATTATGATGTCTATAATGATCTTGGAGATCCTGACATAACCGCTGACCTCAAAAGACCTGTTCTTGGGGGCACCAAACAATATCCATATCCTAGACGGTGTCGCACCGGTCGAAAGCATTCTGATACAGACCCACTATATGAAGAAAGGAGTACTTTAGACTTCTATGTTCCTCGTGACGAGGCATTTGCTGAAACAAAGCAGACACAATTCAATACTTCTGCCGTATCTTTAGGCTTGACTACAATTATTCAATCATTAGACGCAATAGTCACTGATATAAATCTTGGGTTTGAAAACTTTGAAGACATAGAAGCAATTTACAAAGAAGGATTTCAGTTACCAAATCTTGAATCCAATGACTCTAATTTTCTCCAAAAACTCATTCCAAAGTTCTTTAAGGATGCTAACGATAGCCAAAATATCGTGCGCTTTGATACCCCGGAACCATACAAGAGGGATAGATTCTTTTGGTTTTCAGATGTGGAATTTGCCAGAGAGACTTTGGCTGGTGCCAACCCATATAGCATCCAATTGGTTAAGGCATGGACATTACTACAAATTAATATTCATTTCACTCCTTTCACAATAACTTATATATATGAGTGGCCTTTGAAAAGTAAATTGGATGCCCAAATCTATGGTCCACCAGAATCAGCAATTACTAGAGAGATCATTGAGTCACAAATCACAACTTACAGCACAGTTGAAGAGGCTATTAAAGAGAAGAAGTTGTTCATGCTAGACTATCATGATTTTTACTTACCATATGTTAGCAAACTGAGAGAGATTGAGGGAACAACACTATATGGATCAAGAACACTATTCTTTCTTACTAGTGAAGGAATATTGAAGCCACTAGCTATTGAGCTCACTAGACCACCTATTGATGGCAAGGCACAATGGAAGCAAGTGTTCACACCTAATTCTGATTCCACCAATATCTGGCTTTGGAGGCTTGCCAAAGCTCATGTTCTTGTTCATGATTCTGGTCATCATGAGCTAATAAGCCATTGGCTAAGAACTCATTGTGTTGTGGAACCTATTATAATTGCAACACACAGACAACTCAGTTCCATGCATCCAATTTTTAGATTATTGCATCCACATCTGAGATATACCATGGAGATCAATAAAGTTGCGCGTGAAGTTCTCATTAATGCAAGTGGGCTCCTTGAAATATCATTCTTTTCGAATAAAGGAATGGCTGTGGAAGATCCGAATGCACAACATGGAGTGAAGCTAATAATTGAAGACTATCCTTTTGCCAATGATGGTCTTCTAATATGGGATGCAATTAAACAATGGATCACAGAATATGTCAATCATTACTATCCAAGCTCAGACATTATAGAATCTGATCAAGAGCTCCAAGCATGGTGGACAGAAATTCGAACAGTGGGACATGCGGACAAATCTGAAGAACCATGGTGGCCAAATCTCAAAACACAAAATGATCTTATTAACATCATTACCACTATAGCTTGGACAGCATCTGCTCATCATTCAGCTGTGAACTTTACACAATATGCTTATATTGGCTTTTTCCCTAATAGACCAACCATTGCTAGGAAAAAAATGCCAACAGAAGACCCTACTAAGGAAGAATGGGAAAAATTTATGAACCAACCAGAGCAAACACTTTTGGAATGTTTTCCATCAAAAATTCAAGCAACTTTATTTATGATTGTTATGAGCATATTATCAGAACATTCACCAGATGAAGAGTACATTGGACAAAAAATAGAGCCATCTTGGGGTGAGAATTCAACTATAAAGGCAGCTTTTGAAAAGTTACAAAGGAGATTGAATGAAATTGAAGGTATTATAGACTCAAGGAATGAAGATAGGAATTTGAAGAATAGAAATGGAGCTGGTATTGTGCCTTATGAGTCTTTAAAGCCATTTTCAGGGCCTGGAGTCACTGGAAAAGGAGTCCCATACAGCATATCCATTTAA
Protein sequence

>Msa0517360

MILYLGGNMTYLLKKPYVHQSFITNSAIFSPSYNWRKNISHNNSTNWFLKSSLGKKVCIRRGGSSCIRVVMAKGSSSSDNKSHHNVKALVSVKESDGGLIKNIVTGIVGNKHLILELVSAELDPKANSKGETIKGTAHETEKKEKEVQYEATFELPANFGNVGAVLVENEHDKEIFLKNIVLDGFPDGPVHLNCQSWIQPKHDTPTKRVFFINKMYLPSQTPSGLRKLREDELIELRGNGEGERKKSDRIYDYDVYNDLGDPDITADLKRPVLGGTKQYPYPRRCRTGRKHSDTDPLYEERSTLDFYVPRDEAFAETKQTQFNTSAVSLGLTTIIQSLDAIVTDINLGFENFEDIEAIYKEGFQLPNLESNDSNFLQKLIPKFFKDANDSQNIVRFDTPEPYKRDRFFWFSDVEFARETLAGANPYSIQLVKAWTLLQINIHFTPFTITYIYEWPLKSKLDAQIYGPPESAITREIIESQITTYSTVEEAIKEKKLFMLDYHDFYLPYVSKLREIEGTTLYGSRTLFFLTSEGILKPLAIELTRPPIDGKAQWKQVFTPNSDSTNIWLWRLAKAHVLVHDSGHHELISHWLRTHCVVEPIIIATHRQLSSMHPIFRLLHPHLRYTMEINKVAREVLINASGLLEISFFSNKGMAVEDPNAQHGVKLIIEDYPFANDGLLIWDAIKQWITEYVNHYYPSSDIIESDQELQAWWTEIRTVGHADKSEEPWWPNLKTQNDLINIITTIAWTASAHHSAVNFTQYAYIGFFPNRPTIARKKMPTEDPTKEEWEKFMNQPEQTLLECFPSKIQATLFMIVMSILSEHSPDEEYIGQKIEPSWGENSTIKAAFEKLQRRLNEIEGIIDSRNEDRNLKNRNGAGIVPYESLKPFSGPGVTGKGVPYSISI*