AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0483230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0483230 MtrunA17_Chr7g0269301 98.148 162 3 0 1 162 1 162 1.07e-116 327
Msa0483230 MtrunA17_Chr1g0195661 66.667 168 49 3 1 162 1 167 2.77e-77 227
Msa0483230 MtrunA17_Chr1g0194801 42.500 160 79 6 6 158 5 158 4.89e-33 114
Msa0483230 MtrunA17_Chr1g0192651 40.741 162 89 4 1 159 1 158 5.34e-33 115
Msa0483230 MtrunA17_Chr1g0176311 36.905 168 93 4 7 162 21 187 1.22e-29 107
Msa0483230 MtrunA17_Chr1g0176321 38.506 174 88 5 7 162 2 174 2.83e-29 105
Msa0483230 MtrunA17_Chr5g0427291 39.181 171 88 5 1 156 1 170 2.40e-26 98.2
Msa0483230 MtrunA17_Chr4g0001641 49.206 63 32 0 94 156 3 65 3.05e-15 66.6
Msa0483230 MtrunA17_Chr2g0294421 28.144 167 92 4 12 162 9 163 1.20e-12 62.4
Msa0483230 MtrunA17_Chr5g0433951 31.288 163 96 6 4 156 1 157 1.20e-12 62.4
Msa0483230 MtrunA17_Chr4g0032261 30.719 153 96 4 12 157 9 158 5.73e-12 60.5
Msa0483230 MtrunA17_Chr7g0240701 32.911 158 96 5 6 156 3 157 6.94e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0483230 AT2G47710.1 67.284 162 51 2 1 161 1 161 8.39e-72 213
Msa0483230 AT3G11930.1 39.506 162 85 4 10 159 35 195 3.17e-34 119
Msa0483230 AT3G11930.2 39.264 163 85 4 10 159 35 196 4.70e-34 119
Msa0483230 AT3G11930.4 39.024 164 85 4 10 159 35 197 7.27e-34 118
Msa0483230 AT1G09740.2 42.767 159 80 4 10 159 10 166 7.16e-33 115
Msa0483230 AT1G09740.1 42.767 159 80 4 10 159 10 166 7.16e-33 115
Msa0483230 AT3G58450.2 39.103 156 84 5 11 159 33 184 6.44e-29 105
Msa0483230 AT3G11930.3 33.862 189 85 5 10 159 35 222 5.96e-28 103
Msa0483230 AT5G49050.1 45.833 120 62 3 1 119 33 150 1.29e-27 100
Msa0483230 AT3G58450.1 38.037 163 83 6 11 159 33 191 1.03e-26 100
Msa0483230 AT3G62550.1 38.323 167 83 6 1 157 1 157 3.00e-26 97.8
Msa0483230 AT1G68300.1 35.948 153 90 5 7 156 10 157 1.91e-22 88.2

Find 68 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATTATTAATTGTTAA+TGG 0.188332 3_3:+91117586 None:intergenic
CTAGCTGGAGCTGGAATTAA+TGG 0.212017 3_3:+91117796 None:intergenic
GAAGCACCATGCTTCTATTT+TGG 0.216579 3_3:-91116688 Msa0483230:CDS
TGAGATCAGTGTTTGGGTTT+TGG 0.228710 3_3:+91116201 None:intergenic
TCTACTAATGTTGGCTTCAT+AGG 0.275135 3_3:-91117360 Msa0483230:CDS
TTTACGTAGCACGCACTATT+CGG 0.280462 3_3:+91117744 None:intergenic
GAATTGAATTTATTCATATT+CGG 0.325701 3_3:+91117654 None:intergenic
ATTGACATTGTTGGAGGGTT+AGG 0.328565 3_3:-91117855 Msa0483230:five_prime_UTR
TGAATGGACTCTGGATCATT+TGG 0.356319 3_3:-91117442 Msa0483230:CDS
ACAAGAACAAGTTTGAAGAT+TGG 0.363933 3_3:+91117402 None:intergenic
AAAATGTACTAAAATTGAAC+AGG 0.368682 3_3:-91116029 Msa0483230:three_prime_UTR
GTTGTAGGTAGTCATGGTTA+TGG 0.387360 3_3:-91116666 Msa0483230:CDS
TTTGTTACGACTAAATAGTT+TGG 0.392292 3_3:-91117820 Msa0483230:five_prime_UTR
TTAGCACATACGCTCTTGAA+TGG 0.393024 3_3:-91117458 Msa0483230:CDS
TTACGTAGCACGCACTATTC+GGG 0.393064 3_3:+91117745 None:intergenic
AGCCAGTGAGATCAGTGTTT+GGG 0.402587 3_3:+91116195 None:intergenic
CATGTTGAGTCTATAGAATA+AGG 0.405322 3_3:-91116077 Msa0483230:three_prime_UTR
TTCAAATCGGCCTCCACAAT+AGG 0.409491 3_3:+91117214 None:intergenic
TGGTTTCGACCGGCAAGGAC+AGG 0.411632 3_3:+91115999 None:intergenic
ACATAGAACAAACAACATAA+TGG 0.416195 3_3:+91116100 None:intergenic
ATTAGTAGAAGGAGAAGGTT+TGG 0.417086 3_3:+91117374 None:intergenic
AACAAGTTTGAAGATTGGAT+TGG 0.418326 3_3:+91117407 None:intergenic
CAGCCAGTGAGATCAGTGTT+TGG 0.432645 3_3:+91116194 None:intergenic
GGAGGGTTAGGCCTTGGAAC+AGG 0.438786 3_3:-91117843 Msa0483230:five_prime_UTR
AAGTAGTAAATTGACATTGT+TGG 0.441391 3_3:-91117864 Msa0483230:five_prime_UTR
TATTAAAATTACCGATCTCT+TGG 0.443273 3_3:+91117147 None:intergenic
AGATTTATTCTGATTGTTGT+GGG 0.444580 3_3:+91116159 None:intergenic
ATGGTTATGGAGCTATAAAA+AGG 0.449333 3_3:-91116653 Msa0483230:intron
ACAAGTTTGAAGATTGGATT+GGG 0.449888 3_3:+91117408 None:intergenic
ATTGTTGGAGGGTTAGGCCT+TGG 0.461071 3_3:-91117849 Msa0483230:five_prime_UTR
CCTTCTCCTTCTACTAATGT+TGG 0.462856 3_3:-91117369 Msa0483230:CDS
ATGAAGCCAACATTAGTAGA+AGG 0.466396 3_3:+91117363 None:intergenic
GGTTTCGACCGGCAAGGACA+GGG 0.491368 3_3:+91116000 None:intergenic
GATACAAGATCTATCTATCA+TGG 0.495254 3_3:-91117532 Msa0483230:exon
AGGTAATATCTCAGCGGCTC+CGG 0.499084 3_3:+91117234 None:intergenic
CGCTGAGATATTACCTATTG+TGG 0.517301 3_3:-91117227 Msa0483230:CDS
TAGACTTTACTAGCTGGAGC+TGG 0.517595 3_3:+91117787 None:intergenic
TAGTAAATTGACATTGTTGG+AGG 0.522139 3_3:-91117861 Msa0483230:five_prime_UTR
TATTCATATTCGGAGCATCA+AGG 0.545230 3_3:+91117664 None:intergenic
GTCCTTGCCGGTCGAAACCA+TGG 0.545250 3_3:-91115996 Msa0483230:three_prime_UTR
TAATTCTAGACTTTACTAGC+TGG 0.548310 3_3:+91117781 None:intergenic
ATACGCTCTTGAATGGACTC+TGG 0.555617 3_3:-91117451 Msa0483230:CDS
ATAAATACCATGGTTTCGAC+CGG 0.555649 3_3:+91115989 None:intergenic
AAGATTTATTCTGATTGTTG+TGG 0.556092 3_3:+91116158 None:intergenic
AGACGTAGTAGTGGAAGTTG+TGG 0.557524 3_3:-91116748 Msa0483230:CDS
GTTTCGACCGGCAAGGACAG+GGG 0.559730 3_3:+91116001 None:intergenic
GTAGTAGTGGAAGTTGTGGA+TGG 0.560904 3_3:-91116744 Msa0483230:CDS
AGTAAATTGACATTGTTGGA+GGG 0.565691 3_3:-91117860 Msa0483230:five_prime_UTR
AGAAATCTGCACCAAGAGAT+CGG 0.569017 3_3:-91117158 Msa0483230:intron
CCAACATTAGTAGAAGGAGA+AGG 0.571033 3_3:+91117369 None:intergenic
AATGTTGGCTTCATAGGCCC+TGG 0.571494 3_3:-91117354 Msa0483230:intron
GTCGTAACAAACCTGTTCCA+AGG 0.574721 3_3:+91117832 None:intergenic
AACCCAAACACTGATCTCAC+TGG 0.576013 3_3:-91116197 Msa0483230:exon
AAATGTTCTTTGTGATGCTG+TGG 0.577056 3_3:-91116712 Msa0483230:CDS
TTTCGACCGGCAAGGACAGG+GGG 0.595146 3_3:+91116002 None:intergenic
GAGAAGCAAGTGATGGTGGT+CGG 0.595765 3_3:-91117498 Msa0483230:CDS
AAATGTACTAAAATTGAACA+GGG 0.597326 3_3:-91116028 Msa0483230:three_prime_UTR
TCAGGTAAAAGACGTAGTAG+TGG 0.600049 3_3:-91116757 Msa0483230:intron
ATTCATATTCGGAGCATCAA+GGG 0.601352 3_3:+91117665 None:intergenic
ACTAACTATGAGAGAACAAG+TGG 0.604787 3_3:+91117627 None:intergenic
TTCAGAGAAGCAAGTGATGG+TGG 0.623921 3_3:-91117502 Msa0483230:CDS
CTACAACCAAAATAGAAGCA+TGG 0.624553 3_3:+91116682 None:intergenic
TACCATGGTTTCGACCGGCA+AGG 0.626674 3_3:+91115994 None:intergenic
ACAAAATAAAATAAATACCA+TGG 0.633838 3_3:+91115979 None:intergenic
AGTTTCAGAGAAGCAAGTGA+TGG 0.653690 3_3:-91117505 Msa0483230:CDS
TGAGATATTACCTATTGTGG+AGG 0.658611 3_3:-91117224 Msa0483230:CDS
CACAATAGGTAATATCTCAG+CGG 0.686848 3_3:+91117228 None:intergenic
AATGTACTAAAATTGAACAG+GGG 0.730889 3_3:-91116027 Msa0483230:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTATTATTAATTGTTAA+TGG + chr3_3:91116194-91116213 None:intergenic 10.0%
!!! TATTTATTTTATTTTGTTCA+CGG - chr3_3:91117804-91117823 Msa0483230:five_prime_UTR 10.0%
!! TACTTATTATTAATTGTTAA+TGG + chr3_3:91116194-91116213 None:intergenic 10.0%
!!! TATTTATTTTATTTTGTTCA+CGG - chr3_3:91117804-91117823 Msa0483230:five_prime_UTR 10.0%
!!! TTCATTATTAGTATTTTTTG+TGG - chr3_3:91116073-91116092 Msa0483230:three_prime_UTR 15.0%
!! GAATTGAATTTATTCATATT+CGG + chr3_3:91116126-91116145 None:intergenic 15.0%
!! TTCTTTCTTTCATTAAATAA+AGG + chr3_3:91116852-91116871 None:intergenic 15.0%
!!! ACATTTTTTAACATAATCAA+AGG + chr3_3:91117735-91117754 None:intergenic 15.0%
!! ACAAAATAAAATAAATACCA+TGG + chr3_3:91117801-91117820 None:intergenic 15.0%
!!! ATTTATTTTATTTTGTTCAC+GGG - chr3_3:91117805-91117824 Msa0483230:five_prime_UTR 15.0%
!!! TTCATTATTAGTATTTTTTG+TGG - chr3_3:91116073-91116092 Msa0483230:three_prime_UTR 15.0%
!! GAATTGAATTTATTCATATT+CGG + chr3_3:91116126-91116145 None:intergenic 15.0%
!! TTCTTTCTTTCATTAAATAA+AGG + chr3_3:91116852-91116871 None:intergenic 15.0%
!!! ACATTTTTTAACATAATCAA+AGG + chr3_3:91117735-91117754 None:intergenic 15.0%
!! ACAAAATAAAATAAATACCA+TGG + chr3_3:91117801-91117820 None:intergenic 15.0%
!!! ATTTATTTTATTTTGTTCAC+GGG - chr3_3:91117805-91117824 Msa0483230:five_prime_UTR 15.0%
!!! TAATAATGAAGCATTTGAAT+TGG + chr3_3:91116063-91116082 None:intergenic 20.0%
!! CAATATATATAAACATACCA+GGG + chr3_3:91116443-91116462 None:intergenic 20.0%
!! ACAATATATATAAACATACC+AGG + chr3_3:91116444-91116463 None:intergenic 20.0%
!!! TATTCTCTCATTTTCTATTT+TGG - chr3_3:91116651-91116670 Msa0483230:intron 20.0%
!! TAACTTATTATCAATGTCAA+TGG + chr3_3:91117275-91117294 None:intergenic 20.0%
!! AAAATGTACTAAAATTGAAC+AGG - chr3_3:91117748-91117767 Msa0483230:intron 20.0%
!! AAATGTACTAAAATTGAACA+GGG - chr3_3:91117749-91117768 Msa0483230:five_prime_UTR 20.0%
!!! TAATAATGAAGCATTTGAAT+TGG + chr3_3:91116063-91116082 None:intergenic 20.0%
!! CAATATATATAAACATACCA+GGG + chr3_3:91116443-91116462 None:intergenic 20.0%
!! ACAATATATATAAACATACC+AGG + chr3_3:91116444-91116463 None:intergenic 20.0%
!!! TATTCTCTCATTTTCTATTT+TGG - chr3_3:91116651-91116670 Msa0483230:intron 20.0%
!! TAACTTATTATCAATGTCAA+TGG + chr3_3:91117275-91117294 None:intergenic 20.0%
!! AAAATGTACTAAAATTGAAC+AGG - chr3_3:91117748-91117767 Msa0483230:intron 20.0%
!! AAATGTACTAAAATTGAACA+GGG - chr3_3:91117749-91117768 Msa0483230:five_prime_UTR 20.0%
! AAGTAGTAAATTGACATTGT+TGG - chr3_3:91115913-91115932 Msa0483230:three_prime_UTR 25.0%
! TTTGTTACGACTAAATAGTT+TGG - chr3_3:91115957-91115976 Msa0483230:three_prime_UTR 25.0%
! TATTAAAATTACCGATCTCT+TGG + chr3_3:91116633-91116652 None:intergenic 25.0%
!!! ACTAGCTTTTTCTTTATATC+AGG - chr3_3:91117002-91117021 Msa0483230:intron 25.0%
! AGTCTGATAAATACTTATAC+TGG - chr3_3:91117206-91117225 Msa0483230:CDS 25.0%
! AGATTTATTCTGATTGTTGT+GGG + chr3_3:91117621-91117640 None:intergenic 25.0%
! AAGATTTATTCTGATTGTTG+TGG + chr3_3:91117622-91117641 None:intergenic 25.0%
!! GAATAAATCTTTTCAGCAAT+AGG - chr3_3:91117631-91117650 Msa0483230:five_prime_UTR 25.0%
! ACATAGAACAAACAACATAA+TGG + chr3_3:91117680-91117699 None:intergenic 25.0%
! AATGTACTAAAATTGAACAG+GGG - chr3_3:91117750-91117769 Msa0483230:five_prime_UTR 25.0%
! AAGTAGTAAATTGACATTGT+TGG - chr3_3:91115913-91115932 Msa0483230:three_prime_UTR 25.0%
! TTTGTTACGACTAAATAGTT+TGG - chr3_3:91115957-91115976 Msa0483230:three_prime_UTR 25.0%
! TATTAAAATTACCGATCTCT+TGG + chr3_3:91116633-91116652 None:intergenic 25.0%
!!! ACTAGCTTTTTCTTTATATC+AGG - chr3_3:91117002-91117021 Msa0483230:intron 25.0%
! AGTCTGATAAATACTTATAC+TGG - chr3_3:91117206-91117225 Msa0483230:CDS 25.0%
! AGATTTATTCTGATTGTTGT+GGG + chr3_3:91117621-91117640 None:intergenic 25.0%
! AAGATTTATTCTGATTGTTG+TGG + chr3_3:91117622-91117641 None:intergenic 25.0%
!! GAATAAATCTTTTCAGCAAT+AGG - chr3_3:91117631-91117650 Msa0483230:five_prime_UTR 25.0%
! ACATAGAACAAACAACATAA+TGG + chr3_3:91117680-91117699 None:intergenic 25.0%
! AATGTACTAAAATTGAACAG+GGG - chr3_3:91117750-91117769 Msa0483230:five_prime_UTR 25.0%
TAGTAAATTGACATTGTTGG+AGG - chr3_3:91115916-91115935 Msa0483230:three_prime_UTR 30.0%
AGTAAATTGACATTGTTGGA+GGG - chr3_3:91115917-91115936 Msa0483230:three_prime_UTR 30.0%
TAATTCTAGACTTTACTAGC+TGG + chr3_3:91115999-91116018 None:intergenic 30.0%
GATACAAGATCTATCTATCA+TGG - chr3_3:91116245-91116264 Msa0483230:CDS 30.0%
ACAAGTTTGAAGATTGGATT+GGG + chr3_3:91116372-91116391 None:intergenic 30.0%
AACAAGTTTGAAGATTGGAT+TGG + chr3_3:91116373-91116392 None:intergenic 30.0%
ACAAGAACAAGTTTGAAGAT+TGG + chr3_3:91116378-91116397 None:intergenic 30.0%
TGTAACAATGTTTATTCAGC+CGG - chr3_3:91116524-91116543 Msa0483230:intron 30.0%
! AGTAGCAGTTCTTTTCAAAT+CGG + chr3_3:91116579-91116598 None:intergenic 30.0%
!! GATTGGTGGAAAGTTATTTT+TGG - chr3_3:91116758-91116777 Msa0483230:intron 30.0%
!!! GGAAAGTTATTTTTGGAGTT+TGG - chr3_3:91116765-91116784 Msa0483230:intron 30.0%
ATGTAACTTTGCATTTGCTT+AGG + chr3_3:91116888-91116907 None:intergenic 30.0%
ATACTGTGTATGCATACATA+TGG - chr3_3:91116967-91116986 Msa0483230:intron 30.0%
ATGGTTATGGAGCTATAAAA+AGG - chr3_3:91117124-91117143 Msa0483230:intron 30.0%
AATGCAATAGCATGATAACT+GGG + chr3_3:91117167-91117186 None:intergenic 30.0%
ACCAATATAATCTCAAACGT+AGG - chr3_3:91117419-91117438 Msa0483230:CDS 30.0%
CCAATATAATCTCAAACGTA+GGG - chr3_3:91117420-91117439 Msa0483230:CDS 30.0%
TTGAAACTGCATTTATTTGC+AGG - chr3_3:91117484-91117503 Msa0483230:CDS 30.0%
TGAAACTGCATTTATTTGCA+GGG - chr3_3:91117485-91117504 Msa0483230:CDS 30.0%
CATGTTGAGTCTATAGAATA+AGG - chr3_3:91117700-91117719 Msa0483230:five_prime_UTR 30.0%
TAGTAAATTGACATTGTTGG+AGG - chr3_3:91115916-91115935 Msa0483230:three_prime_UTR 30.0%
AGTAAATTGACATTGTTGGA+GGG - chr3_3:91115917-91115936 Msa0483230:three_prime_UTR 30.0%
TAATTCTAGACTTTACTAGC+TGG + chr3_3:91115999-91116018 None:intergenic 30.0%
GATACAAGATCTATCTATCA+TGG - chr3_3:91116245-91116264 Msa0483230:CDS 30.0%
ACAAGTTTGAAGATTGGATT+GGG + chr3_3:91116372-91116391 None:intergenic 30.0%
AACAAGTTTGAAGATTGGAT+TGG + chr3_3:91116373-91116392 None:intergenic 30.0%
ACAAGAACAAGTTTGAAGAT+TGG + chr3_3:91116378-91116397 None:intergenic 30.0%
TGTAACAATGTTTATTCAGC+CGG - chr3_3:91116524-91116543 Msa0483230:intron 30.0%
! AGTAGCAGTTCTTTTCAAAT+CGG + chr3_3:91116579-91116598 None:intergenic 30.0%
!! GATTGGTGGAAAGTTATTTT+TGG - chr3_3:91116758-91116777 Msa0483230:intron 30.0%
!!! GGAAAGTTATTTTTGGAGTT+TGG - chr3_3:91116765-91116784 Msa0483230:intron 30.0%
ATGTAACTTTGCATTTGCTT+AGG + chr3_3:91116888-91116907 None:intergenic 30.0%
ATACTGTGTATGCATACATA+TGG - chr3_3:91116967-91116986 Msa0483230:intron 30.0%
ATGGTTATGGAGCTATAAAA+AGG - chr3_3:91117124-91117143 Msa0483230:intron 30.0%
AATGCAATAGCATGATAACT+GGG + chr3_3:91117167-91117186 None:intergenic 30.0%
ACCAATATAATCTCAAACGT+AGG - chr3_3:91117419-91117438 Msa0483230:CDS 30.0%
CCAATATAATCTCAAACGTA+GGG - chr3_3:91117420-91117439 Msa0483230:CDS 30.0%
TTGAAACTGCATTTATTTGC+AGG - chr3_3:91117484-91117503 Msa0483230:CDS 30.0%
TGAAACTGCATTTATTTGCA+GGG - chr3_3:91117485-91117504 Msa0483230:CDS 30.0%
CATGTTGAGTCTATAGAATA+AGG - chr3_3:91117700-91117719 Msa0483230:five_prime_UTR 30.0%
! ATTCATATTCGGAGCATCAA+GGG + chr3_3:91116115-91116134 None:intergenic 35.0%
! TATTCATATTCGGAGCATCA+AGG + chr3_3:91116116-91116135 None:intergenic 35.0%
ACTAACTATGAGAGAACAAG+TGG + chr3_3:91116153-91116172 None:intergenic 35.0%
ATTAGTAGAAGGAGAAGGTT+TGG + chr3_3:91116406-91116425 None:intergenic 35.0%
ATGAAGCCAACATTAGTAGA+AGG + chr3_3:91116417-91116436 None:intergenic 35.0%
!! TCTACTAATGTTGGCTTCAT+AGG - chr3_3:91116417-91116436 Msa0483230:intron 35.0%
CACAATAGGTAATATCTCAG+CGG + chr3_3:91116552-91116571 None:intergenic 35.0%
TGAGATATTACCTATTGTGG+AGG - chr3_3:91116553-91116572 Msa0483230:intron 35.0%
AAACTAATCTCCCAATCCAT+AGG - chr3_3:91116721-91116740 Msa0483230:CDS 35.0%
CCTCTATATTCCTATGGATT+GGG + chr3_3:91116734-91116753 None:intergenic 35.0%
TCCTCTATATTCCTATGGAT+TGG + chr3_3:91116735-91116754 None:intergenic 35.0%
TTGCATTTGCTTAGGAACTA+AGG + chr3_3:91116880-91116899 None:intergenic 35.0%
AAATGTTCTTTGTGATGCTG+TGG - chr3_3:91117065-91117084 Msa0483230:intron 35.0%
CTACAACCAAAATAGAAGCA+TGG + chr3_3:91117098-91117117 None:intergenic 35.0%
!!! CATGCTTCTATTTTGGTTGT+AGG - chr3_3:91117096-91117115 Msa0483230:intron 35.0%
!!! ATTTTGGTTGTAGGTAGTCA+TGG - chr3_3:91117105-91117124 Msa0483230:intron 35.0%
CAATGCAATAGCATGATAAC+TGG + chr3_3:91117168-91117187 None:intergenic 35.0%
CATTGCGATAATAGCGTTAA+AGG - chr3_3:91117183-91117202 Msa0483230:CDS 35.0%
! CCCTACGTTTGAGATTATAT+TGG + chr3_3:91117423-91117442 None:intergenic 35.0%
!! TTTATTTGCAGGGCTGTTTT+AGG - chr3_3:91117495-91117514 Msa0483230:CDS 35.0%
ATAAATACCATGGTTTCGAC+CGG + chr3_3:91117791-91117810 None:intergenic 35.0%
! ATTCATATTCGGAGCATCAA+GGG + chr3_3:91116115-91116134 None:intergenic 35.0%
! TATTCATATTCGGAGCATCA+AGG + chr3_3:91116116-91116135 None:intergenic 35.0%
ACTAACTATGAGAGAACAAG+TGG + chr3_3:91116153-91116172 None:intergenic 35.0%
ATTAGTAGAAGGAGAAGGTT+TGG + chr3_3:91116406-91116425 None:intergenic 35.0%
ATGAAGCCAACATTAGTAGA+AGG + chr3_3:91116417-91116436 None:intergenic 35.0%
!! TCTACTAATGTTGGCTTCAT+AGG - chr3_3:91116417-91116436 Msa0483230:intron 35.0%
CACAATAGGTAATATCTCAG+CGG + chr3_3:91116552-91116571 None:intergenic 35.0%
TGAGATATTACCTATTGTGG+AGG - chr3_3:91116553-91116572 Msa0483230:intron 35.0%
AAACTAATCTCCCAATCCAT+AGG - chr3_3:91116721-91116740 Msa0483230:CDS 35.0%
CCTCTATATTCCTATGGATT+GGG + chr3_3:91116734-91116753 None:intergenic 35.0%
TCCTCTATATTCCTATGGAT+TGG + chr3_3:91116735-91116754 None:intergenic 35.0%
TTGCATTTGCTTAGGAACTA+AGG + chr3_3:91116880-91116899 None:intergenic 35.0%
AAATGTTCTTTGTGATGCTG+TGG - chr3_3:91117065-91117084 Msa0483230:intron 35.0%
CTACAACCAAAATAGAAGCA+TGG + chr3_3:91117098-91117117 None:intergenic 35.0%
!!! CATGCTTCTATTTTGGTTGT+AGG - chr3_3:91117096-91117115 Msa0483230:intron 35.0%
!!! ATTTTGGTTGTAGGTAGTCA+TGG - chr3_3:91117105-91117124 Msa0483230:intron 35.0%
CAATGCAATAGCATGATAAC+TGG + chr3_3:91117168-91117187 None:intergenic 35.0%
CATTGCGATAATAGCGTTAA+AGG - chr3_3:91117183-91117202 Msa0483230:CDS 35.0%
! CCCTACGTTTGAGATTATAT+TGG + chr3_3:91117423-91117442 None:intergenic 35.0%
!! TTTATTTGCAGGGCTGTTTT+AGG - chr3_3:91117495-91117514 Msa0483230:CDS 35.0%
ATAAATACCATGGTTTCGAC+CGG + chr3_3:91117791-91117810 None:intergenic 35.0%
ATTGACATTGTTGGAGGGTT+AGG - chr3_3:91115922-91115941 Msa0483230:three_prime_UTR 40.0%
TTTACGTAGCACGCACTATT+CGG + chr3_3:91116036-91116055 None:intergenic 40.0%
AGTTTCAGAGAAGCAAGTGA+TGG - chr3_3:91116272-91116291 Msa0483230:CDS 40.0%
TTAGCACATACGCTCTTGAA+TGG - chr3_3:91116319-91116338 Msa0483230:intron 40.0%
! TGAATGGACTCTGGATCATT+TGG - chr3_3:91116335-91116354 Msa0483230:intron 40.0%
CCAACATTAGTAGAAGGAGA+AGG + chr3_3:91116411-91116430 None:intergenic 40.0%
CCTTCTCCTTCTACTAATGT+TGG - chr3_3:91116408-91116427 Msa0483230:intron 40.0%
CGCTGAGATATTACCTATTG+TGG - chr3_3:91116550-91116569 Msa0483230:intron 40.0%
AGAAATCTGCACCAAGAGAT+CGG - chr3_3:91116619-91116638 Msa0483230:intron 40.0%
CCCAATCCATAGGAATATAG+AGG - chr3_3:91116731-91116750 Msa0483230:CDS 40.0%
TCCATAGGAATATAGAGGAG+TGG - chr3_3:91116736-91116755 Msa0483230:CDS 40.0%
TCCACTCCTCTATATTCCTA+TGG + chr3_3:91116740-91116759 None:intergenic 40.0%
AGGAATATAGAGGAGTGGAT+TGG - chr3_3:91116741-91116760 Msa0483230:CDS 40.0%
!! AATATAGAGGAGTGGATTGG+TGG - chr3_3:91116744-91116763 Msa0483230:CDS 40.0%
TAAAGGAAGAACAGAGCTAG+TGG + chr3_3:91116835-91116854 None:intergenic 40.0%
TCAGGTAAAAGACGTAGTAG+TGG - chr3_3:91117020-91117039 Msa0483230:intron 40.0%
!! GAAGCACCATGCTTCTATTT+TGG - chr3_3:91117089-91117108 Msa0483230:intron 40.0%
GTTGTAGGTAGTCATGGTTA+TGG - chr3_3:91117111-91117130 Msa0483230:intron 40.0%
!! TGAGATCAGTGTTTGGGTTT+TGG + chr3_3:91117579-91117598 None:intergenic 40.0%
ATTGACATTGTTGGAGGGTT+AGG - chr3_3:91115922-91115941 Msa0483230:three_prime_UTR 40.0%
TTTACGTAGCACGCACTATT+CGG + chr3_3:91116036-91116055 None:intergenic 40.0%
AGTTTCAGAGAAGCAAGTGA+TGG - chr3_3:91116272-91116291 Msa0483230:CDS 40.0%
TTAGCACATACGCTCTTGAA+TGG - chr3_3:91116319-91116338 Msa0483230:intron 40.0%
! TGAATGGACTCTGGATCATT+TGG - chr3_3:91116335-91116354 Msa0483230:intron 40.0%
CCAACATTAGTAGAAGGAGA+AGG + chr3_3:91116411-91116430 None:intergenic 40.0%
CCTTCTCCTTCTACTAATGT+TGG - chr3_3:91116408-91116427 Msa0483230:intron 40.0%
CGCTGAGATATTACCTATTG+TGG - chr3_3:91116550-91116569 Msa0483230:intron 40.0%
AGAAATCTGCACCAAGAGAT+CGG - chr3_3:91116619-91116638 Msa0483230:intron 40.0%
CCCAATCCATAGGAATATAG+AGG - chr3_3:91116731-91116750 Msa0483230:CDS 40.0%
TCCATAGGAATATAGAGGAG+TGG - chr3_3:91116736-91116755 Msa0483230:CDS 40.0%
TCCACTCCTCTATATTCCTA+TGG + chr3_3:91116740-91116759 None:intergenic 40.0%
AGGAATATAGAGGAGTGGAT+TGG - chr3_3:91116741-91116760 Msa0483230:CDS 40.0%
!! AATATAGAGGAGTGGATTGG+TGG - chr3_3:91116744-91116763 Msa0483230:CDS 40.0%
TAAAGGAAGAACAGAGCTAG+TGG + chr3_3:91116835-91116854 None:intergenic 40.0%
TCAGGTAAAAGACGTAGTAG+TGG - chr3_3:91117020-91117039 Msa0483230:intron 40.0%
!! GAAGCACCATGCTTCTATTT+TGG - chr3_3:91117089-91117108 Msa0483230:intron 40.0%
GTTGTAGGTAGTCATGGTTA+TGG - chr3_3:91117111-91117130 Msa0483230:intron 40.0%
!! TGAGATCAGTGTTTGGGTTT+TGG + chr3_3:91117579-91117598 None:intergenic 40.0%
GTCGTAACAAACCTGTTCCA+AGG + chr3_3:91115948-91115967 None:intergenic 45.0%
CTAGCTGGAGCTGGAATTAA+TGG + chr3_3:91115984-91116003 None:intergenic 45.0%
TAGACTTTACTAGCTGGAGC+TGG + chr3_3:91115993-91116012 None:intergenic 45.0%
TTACGTAGCACGCACTATTC+GGG + chr3_3:91116035-91116054 None:intergenic 45.0%
TTCAGAGAAGCAAGTGATGG+TGG - chr3_3:91116275-91116294 Msa0483230:intron 45.0%
! ATACGCTCTTGAATGGACTC+TGG - chr3_3:91116326-91116345 Msa0483230:intron 45.0%
TTCAAATCGGCCTCCACAAT+AGG + chr3_3:91116566-91116585 None:intergenic 45.0%
AAGAACAGAGCTAGTGGAAG+TGG + chr3_3:91116829-91116848 None:intergenic 45.0%
! AGACGTAGTAGTGGAAGTTG+TGG - chr3_3:91117029-91117048 Msa0483230:intron 45.0%
! GTAGTAGTGGAAGTTGTGGA+TGG - chr3_3:91117033-91117052 Msa0483230:intron 45.0%
ACACTCACAATGTCAGACAC+TGG - chr3_3:91117350-91117369 Msa0483230:intron 45.0%
ACACCTTCAACCTAAGGTGT+CGG - chr3_3:91117375-91117394 Msa0483230:CDS 45.0%
AACCCAAACACTGATCTCAC+TGG - chr3_3:91117580-91117599 Msa0483230:five_prime_UTR 45.0%
AGCCAGTGAGATCAGTGTTT+GGG + chr3_3:91117585-91117604 None:intergenic 45.0%
GTCGTAACAAACCTGTTCCA+AGG + chr3_3:91115948-91115967 None:intergenic 45.0%
CTAGCTGGAGCTGGAATTAA+TGG + chr3_3:91115984-91116003 None:intergenic 45.0%
TAGACTTTACTAGCTGGAGC+TGG + chr3_3:91115993-91116012 None:intergenic 45.0%
TTACGTAGCACGCACTATTC+GGG + chr3_3:91116035-91116054 None:intergenic 45.0%
TTCAGAGAAGCAAGTGATGG+TGG - chr3_3:91116275-91116294 Msa0483230:intron 45.0%
! ATACGCTCTTGAATGGACTC+TGG - chr3_3:91116326-91116345 Msa0483230:intron 45.0%
TTCAAATCGGCCTCCACAAT+AGG + chr3_3:91116566-91116585 None:intergenic 45.0%
AAGAACAGAGCTAGTGGAAG+TGG + chr3_3:91116829-91116848 None:intergenic 45.0%
! AGACGTAGTAGTGGAAGTTG+TGG - chr3_3:91117029-91117048 Msa0483230:intron 45.0%
! GTAGTAGTGGAAGTTGTGGA+TGG - chr3_3:91117033-91117052 Msa0483230:intron 45.0%
ACACTCACAATGTCAGACAC+TGG - chr3_3:91117350-91117369 Msa0483230:intron 45.0%
ACACCTTCAACCTAAGGTGT+CGG - chr3_3:91117375-91117394 Msa0483230:CDS 45.0%
AACCCAAACACTGATCTCAC+TGG - chr3_3:91117580-91117599 Msa0483230:five_prime_UTR 45.0%
AGCCAGTGAGATCAGTGTTT+GGG + chr3_3:91117585-91117604 None:intergenic 45.0%
ATTGTTGGAGGGTTAGGCCT+TGG - chr3_3:91115928-91115947 Msa0483230:three_prime_UTR 50.0%
!! GAGAAGCAAGTGATGGTGGT+CGG - chr3_3:91116279-91116298 Msa0483230:intron 50.0%
!! AATGTTGGCTTCATAGGCCC+TGG - chr3_3:91116423-91116442 Msa0483230:intron 50.0%
AGGTAATATCTCAGCGGCTC+CGG + chr3_3:91116546-91116565 None:intergenic 50.0%
CTGGACACACCTTCAACCTA+AGG - chr3_3:91117369-91117388 Msa0483230:CDS 50.0%
CAGCCAGTGAGATCAGTGTT+TGG + chr3_3:91117586-91117605 None:intergenic 50.0%
ATTGTTGGAGGGTTAGGCCT+TGG - chr3_3:91115928-91115947 Msa0483230:three_prime_UTR 50.0%
!! GAGAAGCAAGTGATGGTGGT+CGG - chr3_3:91116279-91116298 Msa0483230:intron 50.0%
!! AATGTTGGCTTCATAGGCCC+TGG - chr3_3:91116423-91116442 Msa0483230:intron 50.0%
AGGTAATATCTCAGCGGCTC+CGG + chr3_3:91116546-91116565 None:intergenic 50.0%
CTGGACACACCTTCAACCTA+AGG - chr3_3:91117369-91117388 Msa0483230:CDS 50.0%
CAGCCAGTGAGATCAGTGTT+TGG + chr3_3:91117586-91117605 None:intergenic 50.0%
!! GCACCGACACCTTAGGTTGA+AGG + chr3_3:91117381-91117400 None:intergenic 55.0%
!! GTACGTAGCACCGACACCTT+AGG + chr3_3:91117388-91117407 None:intergenic 55.0%
TACCATGGTTTCGACCGGCA+AGG + chr3_3:91117786-91117805 None:intergenic 55.0%
!! GCACCGACACCTTAGGTTGA+AGG + chr3_3:91117381-91117400 None:intergenic 55.0%
!! GTACGTAGCACCGACACCTT+AGG + chr3_3:91117388-91117407 None:intergenic 55.0%
TACCATGGTTTCGACCGGCA+AGG + chr3_3:91117786-91117805 None:intergenic 55.0%
GGAGGGTTAGGCCTTGGAAC+AGG - chr3_3:91115934-91115953 Msa0483230:three_prime_UTR 60.0%
TTTCGACCGGCAAGGACAGG+GGG + chr3_3:91117778-91117797 None:intergenic 60.0%
GTTTCGACCGGCAAGGACAG+GGG + chr3_3:91117779-91117798 None:intergenic 60.0%
GGTTTCGACCGGCAAGGACA+GGG + chr3_3:91117780-91117799 None:intergenic 60.0%
TGGTTTCGACCGGCAAGGAC+AGG + chr3_3:91117781-91117800 None:intergenic 60.0%
GTCCTTGCCGGTCGAAACCA+TGG - chr3_3:91117781-91117800 Msa0483230:five_prime_UTR 60.0%
GGAGGGTTAGGCCTTGGAAC+AGG - chr3_3:91115934-91115953 Msa0483230:three_prime_UTR 60.0%
TTTCGACCGGCAAGGACAGG+GGG + chr3_3:91117778-91117797 None:intergenic 60.0%
GTTTCGACCGGCAAGGACAG+GGG + chr3_3:91117779-91117798 None:intergenic 60.0%
GGTTTCGACCGGCAAGGACA+GGG + chr3_3:91117780-91117799 None:intergenic 60.0%
TGGTTTCGACCGGCAAGGAC+AGG + chr3_3:91117781-91117800 None:intergenic 60.0%
GTCCTTGCCGGTCGAAACCA+TGG - chr3_3:91117781-91117800 Msa0483230:five_prime_UTR 60.0%
GGGGTTCCCCCTGTCCTTGC+CGG - chr3_3:91117769-91117788 Msa0483230:five_prime_UTR 70.0%
GGGGTTCCCCCTGTCCTTGC+CGG - chr3_3:91117769-91117788 Msa0483230:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 91115901 91117898 91115901 ID=Msa0483230;Name=Msa0483230
chr3_3 mRNA 91115901 91117898 91115901 ID=Msa0483230-mRNA-1;Parent=Msa0483230;Name=Msa0483230-mRNA-1;_AED=0.11;_eAED=0.11;_QI=342|1|1|1|0.75|0.6|5|305|162
chr3_3 exon 91115901 91116293 91115901 ID=Msa0483230-mRNA-1:exon:26638;Parent=Msa0483230-mRNA-1
chr3_3 exon 91116654 91116775 91116654 ID=Msa0483230-mRNA-1:exon:26637;Parent=Msa0483230-mRNA-1
chr3_3 exon 91117159 91117256 91117159 ID=Msa0483230-mRNA-1:exon:26636;Parent=Msa0483230-mRNA-1
chr3_3 exon 91117355 91117727 91117355 ID=Msa0483230-mRNA-1:exon:26635;Parent=Msa0483230-mRNA-1
chr3_3 exon 91117749 91117898 91117749 ID=Msa0483230-mRNA-1:exon:26634;Parent=Msa0483230-mRNA-1
chr3_3 five_prime_UTR 91117749 91117898 91117749 ID=Msa0483230-mRNA-1:five_prime_utr;Parent=Msa0483230-mRNA-1
chr3_3 five_prime_UTR 91117536 91117727 91117536 ID=Msa0483230-mRNA-1:five_prime_utr;Parent=Msa0483230-mRNA-1
chr3_3 CDS 91117355 91117535 91117355 ID=Msa0483230-mRNA-1:cds;Parent=Msa0483230-mRNA-1
chr3_3 CDS 91117159 91117256 91117159 ID=Msa0483230-mRNA-1:cds;Parent=Msa0483230-mRNA-1
chr3_3 CDS 91116654 91116775 91116654 ID=Msa0483230-mRNA-1:cds;Parent=Msa0483230-mRNA-1
chr3_3 CDS 91116206 91116293 91116206 ID=Msa0483230-mRNA-1:cds;Parent=Msa0483230-mRNA-1
chr3_3 three_prime_UTR 91115901 91116205 91115901 ID=Msa0483230-mRNA-1:three_prime_utr;Parent=Msa0483230-mRNA-1
Gene Sequence

>Msa0483230

ATGGCTCAAGTTTCAGAGAAGCAAGTGATGGTGGTCGGAGTCGACGACAGTGAATTTAGCACATACGCTCTTGAATGGACTCTGGATCATTTGGTTACTACACTTCCCAATCCAATCTTCAAACTTGTTCTTGTTTTTGCCAAACCTTCTCCTTCTACTAATGTTGGCTTCATAGGCCCTGCCGGAGCCGCTGAGATATTACCTATTGTGGAGGCCGATTTGAAAAGAACTGCTACTATTGTTATTGAAAGAGCTCAAGAAATCTGCACCAAGAGATCGGTAAAAGACGTAGTAGTGGAAGTTGTGGATGGAGATGCTAGAAATGTTCTTTGTGATGCTGTGGAGAAGCACCATGCTTCTATTTTGGTTGTAGGTAGTCATGGTTATGGAGCTATAAAAAGGGCTGTTTTAGGTAGTGTAAGTGACTATTGTGCTCATCATGCTCATTGCACTGTGATGATCGTGAAGAAGCCAAAACCCAAACACTGA

Protein sequence

>Msa0483230

MAQVSEKQVMVVGVDDSEFSTYALEWTLDHLVTTLPNPIFKLVLVFAKPSPSTNVGFIGPAGAAEILPIVEADLKRTATIVIERAQEICTKRSVKDVVVEVVDGDARNVLCDAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKPKH*