AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081950 MtrunA17_Chr7g0269301 98.148 162 3 0 1 162 1 162 1.07e-116 327
Msa1081950 MtrunA17_Chr1g0195661 66.667 168 49 3 1 162 1 167 2.77e-77 227
Msa1081950 MtrunA17_Chr1g0194801 42.500 160 79 6 6 158 5 158 4.89e-33 114
Msa1081950 MtrunA17_Chr1g0192651 40.741 162 89 4 1 159 1 158 5.34e-33 115
Msa1081950 MtrunA17_Chr1g0176311 36.905 168 93 4 7 162 21 187 1.22e-29 107
Msa1081950 MtrunA17_Chr1g0176321 38.506 174 88 5 7 162 2 174 2.83e-29 105
Msa1081950 MtrunA17_Chr5g0427291 39.181 171 88 5 1 156 1 170 2.40e-26 98.2
Msa1081950 MtrunA17_Chr4g0001641 49.206 63 32 0 94 156 3 65 3.05e-15 66.6
Msa1081950 MtrunA17_Chr2g0294421 28.144 167 92 4 12 162 9 163 1.20e-12 62.4
Msa1081950 MtrunA17_Chr5g0433951 31.288 163 96 6 4 156 1 157 1.20e-12 62.4
Msa1081950 MtrunA17_Chr4g0032261 30.719 153 96 4 12 157 9 158 5.73e-12 60.5
Msa1081950 MtrunA17_Chr7g0240701 32.911 158 96 5 6 156 3 157 6.94e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081950 AT2G47710.1 67.284 162 51 2 1 161 1 161 8.39e-72 213
Msa1081950 AT3G11930.1 39.506 162 85 4 10 159 35 195 3.17e-34 119
Msa1081950 AT3G11930.2 39.264 163 85 4 10 159 35 196 4.70e-34 119
Msa1081950 AT3G11930.4 39.024 164 85 4 10 159 35 197 7.27e-34 118
Msa1081950 AT1G09740.2 42.767 159 80 4 10 159 10 166 7.16e-33 115
Msa1081950 AT1G09740.1 42.767 159 80 4 10 159 10 166 7.16e-33 115
Msa1081950 AT3G58450.2 39.103 156 84 5 11 159 33 184 6.44e-29 105
Msa1081950 AT3G11930.3 33.862 189 85 5 10 159 35 222 5.96e-28 103
Msa1081950 AT5G49050.1 45.833 120 62 3 1 119 33 150 1.29e-27 100
Msa1081950 AT3G58450.1 38.037 163 83 6 11 159 33 191 1.03e-26 100
Msa1081950 AT3G62550.1 38.323 167 83 6 1 157 1 157 3.00e-26 97.8
Msa1081950 AT1G68300.1 35.948 153 90 5 7 156 10 157 1.91e-22 88.2

Find 68 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATTATTAATTGTTAA+TGG 0.188332 7_2:-81845075 None:intergenic
CTAGCTGGAGCTGGAATTAA+TGG 0.212017 7_2:-81844865 None:intergenic
GAAGCACCATGCTTCTATTT+TGG 0.216579 7_2:+81846010 Msa1081950:CDS
TGAGATCAGTGTTTGGGTTT+TGG 0.228710 7_2:-81846497 None:intergenic
TCTACTAATGTTGGCTTCAT+AGG 0.275135 7_2:+81845304 Msa1081950:CDS
TTTACGTAGCACGCACTATT+CGG 0.280462 7_2:-81844917 None:intergenic
TGTTGGAGGGTTGGAGGCCT+TGG 0.319842 7_2:+81844812 Msa1081950:five_prime_UTR
GAATTGAATTTATTCATATT+CGG 0.325701 7_2:-81845007 None:intergenic
TGAATGGACTCTGGATCATT+TGG 0.356319 7_2:+81845222 Msa1081950:CDS
ACAAGAACAAGTTTGAAGAT+TGG 0.363933 7_2:-81845262 None:intergenic
AAAATGTACTAAAATTGAAC+AGG 0.368682 7_2:+81846669 Msa1081950:three_prime_UTR
AGGGTTGGAGGCCTTGGAAC+AGG 0.372847 7_2:+81844818 Msa1081950:five_prime_UTR
GTTGTAGGTAGTCATGGTTA+TGG 0.387360 7_2:+81846032 Msa1081950:CDS
TTTGTTACGACTAAATAGTT+TGG 0.392292 7_2:+81844841 Msa1081950:five_prime_UTR
TTAGCACATACGCTCTTGAA+TGG 0.393024 7_2:+81845206 Msa1081950:CDS
TTACGTAGCACGCACTATTC+GGG 0.393064 7_2:-81844916 None:intergenic
AGCCAGTGAGATCAGTGTTT+GGG 0.402587 7_2:-81846503 None:intergenic
CATGTTGAGTCTATAGAATA+AGG 0.405322 7_2:+81846621 Msa1081950:three_prime_UTR
TTCAAATCGGCCTCCACAAT+AGG 0.409491 7_2:-81845458 None:intergenic
TGGTTTCGACCGGCAAGGAC+AGG 0.411632 7_2:-81846699 None:intergenic
ACATAGAACAAACAACATAA+TGG 0.416195 7_2:-81846598 None:intergenic
ATTAGTAGAAGGAGAAGGTT+TGG 0.417086 7_2:-81845290 None:intergenic
AACAAGTTTGAAGATTGGAT+TGG 0.418326 7_2:-81845257 None:intergenic
CAGCCAGTGAGATCAGTGTT+TGG 0.432645 7_2:-81846504 None:intergenic
AAGTAGTAAATTGACATTGT+TGG 0.441391 7_2:+81844795 Msa1081950:five_prime_UTR
TATTAAAATTACCGATCTCT+TGG 0.443273 7_2:-81845525 None:intergenic
AGATTTATTCTGATTGTTGT+GGG 0.444580 7_2:-81846539 None:intergenic
ATGGTTATGGAGCTATAAAA+AGG 0.449333 7_2:+81846045 Msa1081950:CDS
ACAAGTTTGAAGATTGGATT+GGG 0.449888 7_2:-81845256 None:intergenic
AATTGACATTGTTGGAGGGT+TGG 0.454044 7_2:+81844803 Msa1081950:five_prime_UTR
CCTTCTCCTTCTACTAATGT+TGG 0.462856 7_2:+81845295 Msa1081950:CDS
ATGAAGCCAACATTAGTAGA+AGG 0.466396 7_2:-81845301 None:intergenic
GGTTTCGACCGGCAAGGACA+GGG 0.491368 7_2:-81846698 None:intergenic
TGACATTGTTGGAGGGTTGG+AGG 0.491499 7_2:+81844806 Msa1081950:five_prime_UTR
GATACAAGATCTATCTATCA+TGG 0.495254 7_2:+81845132 Msa1081950:exon
CGCTGAGATATTACCTATTG+TGG 0.517301 7_2:+81845445 Msa1081950:CDS
TAGACTTTACTAGCTGGAGC+TGG 0.517595 7_2:-81844874 None:intergenic
TAGTAAATTGACATTGTTGG+AGG 0.522139 7_2:+81844798 Msa1081950:five_prime_UTR
TATTCATATTCGGAGCATCA+AGG 0.545230 7_2:-81844997 None:intergenic
GTCCTTGCCGGTCGAAACCA+TGG 0.545250 7_2:+81846702 Msa1081950:three_prime_UTR
TAATTCTAGACTTTACTAGC+TGG 0.548310 7_2:-81844880 None:intergenic
ATACGCTCTTGAATGGACTC+TGG 0.555617 7_2:+81845213 Msa1081950:CDS
ATAAATACCATGGTTTCGAC+CGG 0.555649 7_2:-81846709 None:intergenic
AAGATTTATTCTGATTGTTG+TGG 0.556092 7_2:-81846540 None:intergenic
AGACGTAGTAGTGGAAGTTG+TGG 0.557524 7_2:+81845950 Msa1081950:CDS
GTTTCGACCGGCAAGGACAG+GGG 0.559730 7_2:-81846697 None:intergenic
GTAGTAGTGGAAGTTGTGGA+TGG 0.560904 7_2:+81845954 Msa1081950:CDS
AGTAAATTGACATTGTTGGA+GGG 0.565691 7_2:+81844799 Msa1081950:five_prime_UTR
AGAAATCTGCACCAAGAGAT+CGG 0.569017 7_2:+81845514 Msa1081950:CDS
CCAACATTAGTAGAAGGAGA+AGG 0.571033 7_2:-81845295 None:intergenic
AATGTTGGCTTCATAGGCCC+TGG 0.571494 7_2:+81845310 Msa1081950:CDS
GTCGTAACAAACCTGTTCCA+AGG 0.574721 7_2:-81844829 None:intergenic
AACCCAAACACTGATCTCAC+TGG 0.576013 7_2:+81846501 Msa1081950:exon
AAATGTTCTTTGTGATGCTG+TGG 0.577056 7_2:+81845986 Msa1081950:CDS
TTTCGACCGGCAAGGACAGG+GGG 0.595146 7_2:-81846696 None:intergenic
AAATGTACTAAAATTGAACA+GGG 0.597326 7_2:+81846670 Msa1081950:three_prime_UTR
TCAGGTAAAAGACGTAGTAG+TGG 0.600049 7_2:+81845941 Msa1081950:intron
ATTCATATTCGGAGCATCAA+GGG 0.601352 7_2:-81844996 None:intergenic
ACTAACTATGAGAGAACAAG+TGG 0.604787 7_2:-81845034 None:intergenic
GAGAAGCAAGTAATGGTGGT+CGG 0.615344 7_2:+81845166 Msa1081950:CDS
CTACAACCAAAATAGAAGCA+TGG 0.624553 7_2:-81846016 None:intergenic
TACCATGGTTTCGACCGGCA+AGG 0.626674 7_2:-81846704 None:intergenic
ACAAAATAAAATAAATACCA+TGG 0.633838 7_2:-81846719 None:intergenic
AGTTTCAGAGAAGCAAGTAA+TGG 0.643945 7_2:+81845159 Msa1081950:CDS
TTCAGAGAAGCAAGTAATGG+TGG 0.648304 7_2:+81845162 Msa1081950:CDS
TGAGATATTACCTATTGTGG+AGG 0.658611 7_2:+81845448 Msa1081950:CDS
CACAATAGGTAATATCTCAG+CGG 0.686848 7_2:-81845444 None:intergenic
AATGTACTAAAATTGAACAG+GGG 0.730889 7_2:+81846671 Msa1081950:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTATTATTAATTGTTAA+TGG - chr7_2:81845078-81845097 None:intergenic 10.0%
!!! TATTTATTTTATTTTGTTCA+CGG + chr7_2:81846725-81846744 Msa1081950:three_prime_UTR 10.0%
!! TACTTATTATTAATTGTTAA+TGG - chr7_2:81845078-81845097 None:intergenic 10.0%
!!! TATTTATTTTATTTTGTTCA+CGG + chr7_2:81846725-81846744 Msa1081950:three_prime_UTR 10.0%
!!! TTCATTATTAGTATTTTTTG+TGG + chr7_2:81844957-81844976 Msa1081950:intron 15.0%
!! GAATTGAATTTATTCATATT+CGG - chr7_2:81845010-81845029 None:intergenic 15.0%
!! TTCTTTCTTTCATTAAATAA+AGG - chr7_2:81845773-81845792 None:intergenic 15.0%
!!! ACATTTTTTAACATAATCAA+AGG - chr7_2:81846656-81846675 None:intergenic 15.0%
!! ACAAAATAAAATAAATACCA+TGG - chr7_2:81846722-81846741 None:intergenic 15.0%
!!! ATTTATTTTATTTTGTTCAC+GGG + chr7_2:81846726-81846745 Msa1081950:three_prime_UTR 15.0%
!!! TTCATTATTAGTATTTTTTG+TGG + chr7_2:81844957-81844976 Msa1081950:intron 15.0%
!! GAATTGAATTTATTCATATT+CGG - chr7_2:81845010-81845029 None:intergenic 15.0%
!! TTCTTTCTTTCATTAAATAA+AGG - chr7_2:81845773-81845792 None:intergenic 15.0%
!!! ACATTTTTTAACATAATCAA+AGG - chr7_2:81846656-81846675 None:intergenic 15.0%
!! ACAAAATAAAATAAATACCA+TGG - chr7_2:81846722-81846741 None:intergenic 15.0%
!!! ATTTATTTTATTTTGTTCAC+GGG + chr7_2:81846726-81846745 Msa1081950:three_prime_UTR 15.0%
!!! TATTCTCTCATTTTCTATTT+TGG + chr7_2:81845546-81845565 Msa1081950:intron 20.0%
!!! TCAAAACTAATTTTATACCT+AGG + chr7_2:81845613-81845632 Msa1081950:intron 20.0%
!!! CAAAACTAATTTTATACCTA+GGG + chr7_2:81845614-81845633 Msa1081950:intron 20.0%
!!! AAAACTAATTTTATACCTAG+GGG + chr7_2:81845615-81845634 Msa1081950:intron 20.0%
!! TAACTTATTATCAATGTCAA+TGG - chr7_2:81846196-81846215 None:intergenic 20.0%
!! AAAATGTACTAAAATTGAAC+AGG + chr7_2:81846669-81846688 Msa1081950:three_prime_UTR 20.0%
!! AAATGTACTAAAATTGAACA+GGG + chr7_2:81846670-81846689 Msa1081950:three_prime_UTR 20.0%
!!! TATTCTCTCATTTTCTATTT+TGG + chr7_2:81845546-81845565 Msa1081950:intron 20.0%
!!! TCAAAACTAATTTTATACCT+AGG + chr7_2:81845613-81845632 Msa1081950:intron 20.0%
!!! CAAAACTAATTTTATACCTA+GGG + chr7_2:81845614-81845633 Msa1081950:intron 20.0%
!!! AAAACTAATTTTATACCTAG+GGG + chr7_2:81845615-81845634 Msa1081950:intron 20.0%
!! TAACTTATTATCAATGTCAA+TGG - chr7_2:81846196-81846215 None:intergenic 20.0%
!! AAAATGTACTAAAATTGAAC+AGG + chr7_2:81846669-81846688 Msa1081950:three_prime_UTR 20.0%
!! AAATGTACTAAAATTGAACA+GGG + chr7_2:81846670-81846689 Msa1081950:three_prime_UTR 20.0%
! AAGTAGTAAATTGACATTGT+TGG + chr7_2:81844795-81844814 Msa1081950:five_prime_UTR 25.0%
! TTTGTTACGACTAAATAGTT+TGG + chr7_2:81844841-81844860 Msa1081950:five_prime_UTR 25.0%
! TAATAATGAAGCATGTGAAT+TGG - chr7_2:81844947-81844966 None:intergenic 25.0%
! ATACAAACATTAACATACCA+GGG - chr7_2:81845330-81845349 None:intergenic 25.0%
! TATACAAACATTAACATACC+AGG - chr7_2:81845331-81845350 None:intergenic 25.0%
! TTGTAACAATGTTTATTCAG+CGG + chr7_2:81845418-81845437 Msa1081950:intron 25.0%
! TATTAAAATTACCGATCTCT+TGG - chr7_2:81845528-81845547 None:intergenic 25.0%
!! AAACTAATTTTATACCTAGG+GGG + chr7_2:81845616-81845635 Msa1081950:intron 25.0%
!!! ACTAGCTTTTTCTTTATATC+AGG + chr7_2:81845923-81845942 Msa1081950:intron 25.0%
! AGTCTGATAAATACTTATAC+TGG + chr7_2:81846127-81846146 Msa1081950:intron 25.0%
! AGATTTATTCTGATTGTTGT+GGG - chr7_2:81846542-81846561 None:intergenic 25.0%
! AAGATTTATTCTGATTGTTG+TGG - chr7_2:81846543-81846562 None:intergenic 25.0%
!! GAATAAATCTTTTCAGCAAT+AGG + chr7_2:81846552-81846571 Msa1081950:three_prime_UTR 25.0%
! ACATAGAACAAACAACATAA+TGG - chr7_2:81846601-81846620 None:intergenic 25.0%
! AATGTACTAAAATTGAACAG+GGG + chr7_2:81846671-81846690 Msa1081950:three_prime_UTR 25.0%
! AAGTAGTAAATTGACATTGT+TGG + chr7_2:81844795-81844814 Msa1081950:five_prime_UTR 25.0%
! TTTGTTACGACTAAATAGTT+TGG + chr7_2:81844841-81844860 Msa1081950:five_prime_UTR 25.0%
! TAATAATGAAGCATGTGAAT+TGG - chr7_2:81844947-81844966 None:intergenic 25.0%
! ATACAAACATTAACATACCA+GGG - chr7_2:81845330-81845349 None:intergenic 25.0%
! TATACAAACATTAACATACC+AGG - chr7_2:81845331-81845350 None:intergenic 25.0%
! TTGTAACAATGTTTATTCAG+CGG + chr7_2:81845418-81845437 Msa1081950:intron 25.0%
! TATTAAAATTACCGATCTCT+TGG - chr7_2:81845528-81845547 None:intergenic 25.0%
!! AAACTAATTTTATACCTAGG+GGG + chr7_2:81845616-81845635 Msa1081950:intron 25.0%
!!! ACTAGCTTTTTCTTTATATC+AGG + chr7_2:81845923-81845942 Msa1081950:intron 25.0%
! AGTCTGATAAATACTTATAC+TGG + chr7_2:81846127-81846146 Msa1081950:intron 25.0%
! AGATTTATTCTGATTGTTGT+GGG - chr7_2:81846542-81846561 None:intergenic 25.0%
! AAGATTTATTCTGATTGTTG+TGG - chr7_2:81846543-81846562 None:intergenic 25.0%
!! GAATAAATCTTTTCAGCAAT+AGG + chr7_2:81846552-81846571 Msa1081950:three_prime_UTR 25.0%
! ACATAGAACAAACAACATAA+TGG - chr7_2:81846601-81846620 None:intergenic 25.0%
! AATGTACTAAAATTGAACAG+GGG + chr7_2:81846671-81846690 Msa1081950:three_prime_UTR 25.0%
TAGTAAATTGACATTGTTGG+AGG + chr7_2:81844798-81844817 Msa1081950:five_prime_UTR 30.0%
AGTAAATTGACATTGTTGGA+GGG + chr7_2:81844799-81844818 Msa1081950:five_prime_UTR 30.0%
TAATTCTAGACTTTACTAGC+TGG - chr7_2:81844883-81844902 None:intergenic 30.0%
GATACAAGATCTATCTATCA+TGG + chr7_2:81845132-81845151 Msa1081950:exon 30.0%
ACAAGTTTGAAGATTGGATT+GGG - chr7_2:81845259-81845278 None:intergenic 30.0%
AACAAGTTTGAAGATTGGAT+TGG - chr7_2:81845260-81845279 None:intergenic 30.0%
ACAAGAACAAGTTTGAAGAT+TGG - chr7_2:81845265-81845284 None:intergenic 30.0%
TGTAACAATGTTTATTCAGC+GGG + chr7_2:81845419-81845438 Msa1081950:intron 30.0%
! AGTAGCAGTTCTTTTCAAAT+CGG - chr7_2:81845474-81845493 None:intergenic 30.0%
!! GATTGGTGGAAAGTTATTTT+TGG + chr7_2:81845679-81845698 Msa1081950:intron 30.0%
!!! GGAAAGTTATTTTTGGAGTT+TGG + chr7_2:81845686-81845705 Msa1081950:intron 30.0%
ATGTAACTTTGCATTTGCTT+AGG - chr7_2:81845809-81845828 None:intergenic 30.0%
ATACTGTGTATGCATACATA+TGG + chr7_2:81845888-81845907 Msa1081950:intron 30.0%
ATGGTTATGGAGCTATAAAA+AGG + chr7_2:81846045-81846064 Msa1081950:CDS 30.0%
AATGCAATAGCATGATAACT+GGG - chr7_2:81846088-81846107 None:intergenic 30.0%
ACCAATATAATCTCAAACGT+AGG + chr7_2:81846340-81846359 Msa1081950:intron 30.0%
CCAATATAATCTCAAACGTA+GGG + chr7_2:81846341-81846360 Msa1081950:intron 30.0%
TTGAAACTGCATTTATTTGC+AGG + chr7_2:81846405-81846424 Msa1081950:intron 30.0%
TGAAACTGCATTTATTTGCA+GGG + chr7_2:81846406-81846425 Msa1081950:intron 30.0%
CATGTTGAGTCTATAGAATA+AGG + chr7_2:81846621-81846640 Msa1081950:three_prime_UTR 30.0%
TAGTAAATTGACATTGTTGG+AGG + chr7_2:81844798-81844817 Msa1081950:five_prime_UTR 30.0%
AGTAAATTGACATTGTTGGA+GGG + chr7_2:81844799-81844818 Msa1081950:five_prime_UTR 30.0%
TAATTCTAGACTTTACTAGC+TGG - chr7_2:81844883-81844902 None:intergenic 30.0%
GATACAAGATCTATCTATCA+TGG + chr7_2:81845132-81845151 Msa1081950:exon 30.0%
ACAAGTTTGAAGATTGGATT+GGG - chr7_2:81845259-81845278 None:intergenic 30.0%
AACAAGTTTGAAGATTGGAT+TGG - chr7_2:81845260-81845279 None:intergenic 30.0%
ACAAGAACAAGTTTGAAGAT+TGG - chr7_2:81845265-81845284 None:intergenic 30.0%
TGTAACAATGTTTATTCAGC+GGG + chr7_2:81845419-81845438 Msa1081950:intron 30.0%
! AGTAGCAGTTCTTTTCAAAT+CGG - chr7_2:81845474-81845493 None:intergenic 30.0%
!! GATTGGTGGAAAGTTATTTT+TGG + chr7_2:81845679-81845698 Msa1081950:intron 30.0%
!!! GGAAAGTTATTTTTGGAGTT+TGG + chr7_2:81845686-81845705 Msa1081950:intron 30.0%
ATGTAACTTTGCATTTGCTT+AGG - chr7_2:81845809-81845828 None:intergenic 30.0%
ATACTGTGTATGCATACATA+TGG + chr7_2:81845888-81845907 Msa1081950:intron 30.0%
ATGGTTATGGAGCTATAAAA+AGG + chr7_2:81846045-81846064 Msa1081950:CDS 30.0%
AATGCAATAGCATGATAACT+GGG - chr7_2:81846088-81846107 None:intergenic 30.0%
ACCAATATAATCTCAAACGT+AGG + chr7_2:81846340-81846359 Msa1081950:intron 30.0%
CCAATATAATCTCAAACGTA+GGG + chr7_2:81846341-81846360 Msa1081950:intron 30.0%
TTGAAACTGCATTTATTTGC+AGG + chr7_2:81846405-81846424 Msa1081950:intron 30.0%
TGAAACTGCATTTATTTGCA+GGG + chr7_2:81846406-81846425 Msa1081950:intron 30.0%
CATGTTGAGTCTATAGAATA+AGG + chr7_2:81846621-81846640 Msa1081950:three_prime_UTR 30.0%
! ATTCATATTCGGAGCATCAA+GGG - chr7_2:81844999-81845018 None:intergenic 35.0%
! TATTCATATTCGGAGCATCA+AGG - chr7_2:81845000-81845019 None:intergenic 35.0%
ACTAACTATGAGAGAACAAG+TGG - chr7_2:81845037-81845056 None:intergenic 35.0%
AGTTTCAGAGAAGCAAGTAA+TGG + chr7_2:81845159-81845178 Msa1081950:CDS 35.0%
ATTAGTAGAAGGAGAAGGTT+TGG - chr7_2:81845293-81845312 None:intergenic 35.0%
ATGAAGCCAACATTAGTAGA+AGG - chr7_2:81845304-81845323 None:intergenic 35.0%
!! TCTACTAATGTTGGCTTCAT+AGG + chr7_2:81845304-81845323 Msa1081950:CDS 35.0%
CACAATAGGTAATATCTCAG+CGG - chr7_2:81845447-81845466 None:intergenic 35.0%
TGAGATATTACCTATTGTGG+AGG + chr7_2:81845448-81845467 Msa1081950:CDS 35.0%
!! TATATTCCTATGGATTGGGA+GGG - chr7_2:81845651-81845670 None:intergenic 35.0%
CCTCTATATTCCTATGGATT+GGG - chr7_2:81845655-81845674 None:intergenic 35.0%
TCCTCTATATTCCTATGGAT+TGG - chr7_2:81845656-81845675 None:intergenic 35.0%
TTGCATTTGCTTAGGAACTA+AGG - chr7_2:81845801-81845820 None:intergenic 35.0%
AAATGTTCTTTGTGATGCTG+TGG + chr7_2:81845986-81846005 Msa1081950:CDS 35.0%
CTACAACCAAAATAGAAGCA+TGG - chr7_2:81846019-81846038 None:intergenic 35.0%
!!! CATGCTTCTATTTTGGTTGT+AGG + chr7_2:81846017-81846036 Msa1081950:CDS 35.0%
!!! ATTTTGGTTGTAGGTAGTCA+TGG + chr7_2:81846026-81846045 Msa1081950:CDS 35.0%
CAATGCAATAGCATGATAAC+TGG - chr7_2:81846089-81846108 None:intergenic 35.0%
CATTGCGATAATAGCGTTAA+AGG + chr7_2:81846104-81846123 Msa1081950:intron 35.0%
! CCCTACGTTTGAGATTATAT+TGG - chr7_2:81846344-81846363 None:intergenic 35.0%
!! TTTATTTGCAGGGCTGTTTT+AGG + chr7_2:81846416-81846435 Msa1081950:intron 35.0%
ATAAATACCATGGTTTCGAC+CGG - chr7_2:81846712-81846731 None:intergenic 35.0%
! ATTCATATTCGGAGCATCAA+GGG - chr7_2:81844999-81845018 None:intergenic 35.0%
! TATTCATATTCGGAGCATCA+AGG - chr7_2:81845000-81845019 None:intergenic 35.0%
ACTAACTATGAGAGAACAAG+TGG - chr7_2:81845037-81845056 None:intergenic 35.0%
AGTTTCAGAGAAGCAAGTAA+TGG + chr7_2:81845159-81845178 Msa1081950:CDS 35.0%
ATTAGTAGAAGGAGAAGGTT+TGG - chr7_2:81845293-81845312 None:intergenic 35.0%
ATGAAGCCAACATTAGTAGA+AGG - chr7_2:81845304-81845323 None:intergenic 35.0%
!! TCTACTAATGTTGGCTTCAT+AGG + chr7_2:81845304-81845323 Msa1081950:CDS 35.0%
CACAATAGGTAATATCTCAG+CGG - chr7_2:81845447-81845466 None:intergenic 35.0%
TGAGATATTACCTATTGTGG+AGG + chr7_2:81845448-81845467 Msa1081950:CDS 35.0%
!! TATATTCCTATGGATTGGGA+GGG - chr7_2:81845651-81845670 None:intergenic 35.0%
CCTCTATATTCCTATGGATT+GGG - chr7_2:81845655-81845674 None:intergenic 35.0%
TCCTCTATATTCCTATGGAT+TGG - chr7_2:81845656-81845675 None:intergenic 35.0%
TTGCATTTGCTTAGGAACTA+AGG - chr7_2:81845801-81845820 None:intergenic 35.0%
AAATGTTCTTTGTGATGCTG+TGG + chr7_2:81845986-81846005 Msa1081950:CDS 35.0%
CTACAACCAAAATAGAAGCA+TGG - chr7_2:81846019-81846038 None:intergenic 35.0%
!!! CATGCTTCTATTTTGGTTGT+AGG + chr7_2:81846017-81846036 Msa1081950:CDS 35.0%
!!! ATTTTGGTTGTAGGTAGTCA+TGG + chr7_2:81846026-81846045 Msa1081950:CDS 35.0%
CAATGCAATAGCATGATAAC+TGG - chr7_2:81846089-81846108 None:intergenic 35.0%
CATTGCGATAATAGCGTTAA+AGG + chr7_2:81846104-81846123 Msa1081950:intron 35.0%
! CCCTACGTTTGAGATTATAT+TGG - chr7_2:81846344-81846363 None:intergenic 35.0%
!! TTTATTTGCAGGGCTGTTTT+AGG + chr7_2:81846416-81846435 Msa1081950:intron 35.0%
ATAAATACCATGGTTTCGAC+CGG - chr7_2:81846712-81846731 None:intergenic 35.0%
AATTGACATTGTTGGAGGGT+TGG + chr7_2:81844803-81844822 Msa1081950:five_prime_UTR 40.0%
TTTACGTAGCACGCACTATT+CGG - chr7_2:81844920-81844939 None:intergenic 40.0%
TTCAGAGAAGCAAGTAATGG+TGG + chr7_2:81845162-81845181 Msa1081950:CDS 40.0%
TTAGCACATACGCTCTTGAA+TGG + chr7_2:81845206-81845225 Msa1081950:CDS 40.0%
! TGAATGGACTCTGGATCATT+TGG + chr7_2:81845222-81845241 Msa1081950:CDS 40.0%
CCAACATTAGTAGAAGGAGA+AGG - chr7_2:81845298-81845317 None:intergenic 40.0%
CCTTCTCCTTCTACTAATGT+TGG + chr7_2:81845295-81845314 Msa1081950:CDS 40.0%
CGCTGAGATATTACCTATTG+TGG + chr7_2:81845445-81845464 Msa1081950:CDS 40.0%
AGAAATCTGCACCAAGAGAT+CGG + chr7_2:81845514-81845533 Msa1081950:CDS 40.0%
!!! TTTTTTCCCTCCCAATCCAT+AGG + chr7_2:81845642-81845661 Msa1081950:intron 40.0%
!! CTATATTCCTATGGATTGGG+AGG - chr7_2:81845652-81845671 None:intergenic 40.0%
CCCAATCCATAGGAATATAG+AGG + chr7_2:81845652-81845671 Msa1081950:intron 40.0%
TCCATAGGAATATAGAGGAG+TGG + chr7_2:81845657-81845676 Msa1081950:intron 40.0%
TCCACTCCTCTATATTCCTA+TGG - chr7_2:81845661-81845680 None:intergenic 40.0%
AGGAATATAGAGGAGTGGAT+TGG + chr7_2:81845662-81845681 Msa1081950:intron 40.0%
!! AATATAGAGGAGTGGATTGG+TGG + chr7_2:81845665-81845684 Msa1081950:intron 40.0%
TAAAGGAAGAACAGAGCTAG+TGG - chr7_2:81845756-81845775 None:intergenic 40.0%
TCAGGTAAAAGACGTAGTAG+TGG + chr7_2:81845941-81845960 Msa1081950:intron 40.0%
!! GAAGCACCATGCTTCTATTT+TGG + chr7_2:81846010-81846029 Msa1081950:CDS 40.0%
GTTGTAGGTAGTCATGGTTA+TGG + chr7_2:81846032-81846051 Msa1081950:CDS 40.0%
!! TGAGATCAGTGTTTGGGTTT+TGG - chr7_2:81846500-81846519 None:intergenic 40.0%
AATTGACATTGTTGGAGGGT+TGG + chr7_2:81844803-81844822 Msa1081950:five_prime_UTR 40.0%
TTTACGTAGCACGCACTATT+CGG - chr7_2:81844920-81844939 None:intergenic 40.0%
TTCAGAGAAGCAAGTAATGG+TGG + chr7_2:81845162-81845181 Msa1081950:CDS 40.0%
TTAGCACATACGCTCTTGAA+TGG + chr7_2:81845206-81845225 Msa1081950:CDS 40.0%
! TGAATGGACTCTGGATCATT+TGG + chr7_2:81845222-81845241 Msa1081950:CDS 40.0%
CCAACATTAGTAGAAGGAGA+AGG - chr7_2:81845298-81845317 None:intergenic 40.0%
CCTTCTCCTTCTACTAATGT+TGG + chr7_2:81845295-81845314 Msa1081950:CDS 40.0%
CGCTGAGATATTACCTATTG+TGG + chr7_2:81845445-81845464 Msa1081950:CDS 40.0%
AGAAATCTGCACCAAGAGAT+CGG + chr7_2:81845514-81845533 Msa1081950:CDS 40.0%
!!! TTTTTTCCCTCCCAATCCAT+AGG + chr7_2:81845642-81845661 Msa1081950:intron 40.0%
!! CTATATTCCTATGGATTGGG+AGG - chr7_2:81845652-81845671 None:intergenic 40.0%
CCCAATCCATAGGAATATAG+AGG + chr7_2:81845652-81845671 Msa1081950:intron 40.0%
TCCATAGGAATATAGAGGAG+TGG + chr7_2:81845657-81845676 Msa1081950:intron 40.0%
TCCACTCCTCTATATTCCTA+TGG - chr7_2:81845661-81845680 None:intergenic 40.0%
AGGAATATAGAGGAGTGGAT+TGG + chr7_2:81845662-81845681 Msa1081950:intron 40.0%
!! AATATAGAGGAGTGGATTGG+TGG + chr7_2:81845665-81845684 Msa1081950:intron 40.0%
TAAAGGAAGAACAGAGCTAG+TGG - chr7_2:81845756-81845775 None:intergenic 40.0%
TCAGGTAAAAGACGTAGTAG+TGG + chr7_2:81845941-81845960 Msa1081950:intron 40.0%
!! GAAGCACCATGCTTCTATTT+TGG + chr7_2:81846010-81846029 Msa1081950:CDS 40.0%
GTTGTAGGTAGTCATGGTTA+TGG + chr7_2:81846032-81846051 Msa1081950:CDS 40.0%
!! TGAGATCAGTGTTTGGGTTT+TGG - chr7_2:81846500-81846519 None:intergenic 40.0%
GTCGTAACAAACCTGTTCCA+AGG - chr7_2:81844832-81844851 None:intergenic 45.0%
CTAGCTGGAGCTGGAATTAA+TGG - chr7_2:81844868-81844887 None:intergenic 45.0%
TAGACTTTACTAGCTGGAGC+TGG - chr7_2:81844877-81844896 None:intergenic 45.0%
TTACGTAGCACGCACTATTC+GGG - chr7_2:81844919-81844938 None:intergenic 45.0%
GAGAAGCAAGTAATGGTGGT+CGG + chr7_2:81845166-81845185 Msa1081950:CDS 45.0%
! ATACGCTCTTGAATGGACTC+TGG + chr7_2:81845213-81845232 Msa1081950:CDS 45.0%
TTCAAATCGGCCTCCACAAT+AGG - chr7_2:81845461-81845480 None:intergenic 45.0%
GAGGGAAAAAATAACCCCCT+AGG - chr7_2:81845633-81845652 None:intergenic 45.0%
AAGAACAGAGCTAGTGGAAG+TGG - chr7_2:81845750-81845769 None:intergenic 45.0%
! AGACGTAGTAGTGGAAGTTG+TGG + chr7_2:81845950-81845969 Msa1081950:CDS 45.0%
! GTAGTAGTGGAAGTTGTGGA+TGG + chr7_2:81845954-81845973 Msa1081950:CDS 45.0%
ACACTCACAATGTCAGACAC+TGG + chr7_2:81846271-81846290 Msa1081950:intron 45.0%
ACACCTTCAACCTAAGGTGT+CGG + chr7_2:81846296-81846315 Msa1081950:intron 45.0%
AACCCAAACACTGATCTCAC+TGG + chr7_2:81846501-81846520 Msa1081950:exon 45.0%
AGCCAGTGAGATCAGTGTTT+GGG - chr7_2:81846506-81846525 None:intergenic 45.0%
GTCGTAACAAACCTGTTCCA+AGG - chr7_2:81844832-81844851 None:intergenic 45.0%
CTAGCTGGAGCTGGAATTAA+TGG - chr7_2:81844868-81844887 None:intergenic 45.0%
TAGACTTTACTAGCTGGAGC+TGG - chr7_2:81844877-81844896 None:intergenic 45.0%
TTACGTAGCACGCACTATTC+GGG - chr7_2:81844919-81844938 None:intergenic 45.0%
GAGAAGCAAGTAATGGTGGT+CGG + chr7_2:81845166-81845185 Msa1081950:CDS 45.0%
! ATACGCTCTTGAATGGACTC+TGG + chr7_2:81845213-81845232 Msa1081950:CDS 45.0%
TTCAAATCGGCCTCCACAAT+AGG - chr7_2:81845461-81845480 None:intergenic 45.0%
GAGGGAAAAAATAACCCCCT+AGG - chr7_2:81845633-81845652 None:intergenic 45.0%
AAGAACAGAGCTAGTGGAAG+TGG - chr7_2:81845750-81845769 None:intergenic 45.0%
! AGACGTAGTAGTGGAAGTTG+TGG + chr7_2:81845950-81845969 Msa1081950:CDS 45.0%
! GTAGTAGTGGAAGTTGTGGA+TGG + chr7_2:81845954-81845973 Msa1081950:CDS 45.0%
ACACTCACAATGTCAGACAC+TGG + chr7_2:81846271-81846290 Msa1081950:intron 45.0%
ACACCTTCAACCTAAGGTGT+CGG + chr7_2:81846296-81846315 Msa1081950:intron 45.0%
AACCCAAACACTGATCTCAC+TGG + chr7_2:81846501-81846520 Msa1081950:exon 45.0%
AGCCAGTGAGATCAGTGTTT+GGG - chr7_2:81846506-81846525 None:intergenic 45.0%
TGACATTGTTGGAGGGTTGG+AGG + chr7_2:81844806-81844825 Msa1081950:five_prime_UTR 50.0%
!! AATGTTGGCTTCATAGGCCC+TGG + chr7_2:81845310-81845329 Msa1081950:CDS 50.0%
CTGGACACACCTTCAACCTA+AGG + chr7_2:81846290-81846309 Msa1081950:intron 50.0%
CAGCCAGTGAGATCAGTGTT+TGG - chr7_2:81846507-81846526 None:intergenic 50.0%
TGACATTGTTGGAGGGTTGG+AGG + chr7_2:81844806-81844825 Msa1081950:five_prime_UTR 50.0%
!! AATGTTGGCTTCATAGGCCC+TGG + chr7_2:81845310-81845329 Msa1081950:CDS 50.0%
CTGGACACACCTTCAACCTA+AGG + chr7_2:81846290-81846309 Msa1081950:intron 50.0%
CAGCCAGTGAGATCAGTGTT+TGG - chr7_2:81846507-81846526 None:intergenic 50.0%
!! GCACCGACACCTTAGGTTGA+AGG - chr7_2:81846302-81846321 None:intergenic 55.0%
!! GTACGTAGCACCGACACCTT+AGG - chr7_2:81846309-81846328 None:intergenic 55.0%
TACCATGGTTTCGACCGGCA+AGG - chr7_2:81846707-81846726 None:intergenic 55.0%
!! GCACCGACACCTTAGGTTGA+AGG - chr7_2:81846302-81846321 None:intergenic 55.0%
!! GTACGTAGCACCGACACCTT+AGG - chr7_2:81846309-81846328 None:intergenic 55.0%
TACCATGGTTTCGACCGGCA+AGG - chr7_2:81846707-81846726 None:intergenic 55.0%
TGTTGGAGGGTTGGAGGCCT+TGG + chr7_2:81844812-81844831 Msa1081950:five_prime_UTR 60.0%
AGGGTTGGAGGCCTTGGAAC+AGG + chr7_2:81844818-81844837 Msa1081950:five_prime_UTR 60.0%
TTTCGACCGGCAAGGACAGG+GGG - chr7_2:81846699-81846718 None:intergenic 60.0%
GTTTCGACCGGCAAGGACAG+GGG - chr7_2:81846700-81846719 None:intergenic 60.0%
GGTTTCGACCGGCAAGGACA+GGG - chr7_2:81846701-81846720 None:intergenic 60.0%
TGGTTTCGACCGGCAAGGAC+AGG - chr7_2:81846702-81846721 None:intergenic 60.0%
GTCCTTGCCGGTCGAAACCA+TGG + chr7_2:81846702-81846721 Msa1081950:three_prime_UTR 60.0%
TGTTGGAGGGTTGGAGGCCT+TGG + chr7_2:81844812-81844831 Msa1081950:five_prime_UTR 60.0%
AGGGTTGGAGGCCTTGGAAC+AGG + chr7_2:81844818-81844837 Msa1081950:five_prime_UTR 60.0%
TTTCGACCGGCAAGGACAGG+GGG - chr7_2:81846699-81846718 None:intergenic 60.0%
GTTTCGACCGGCAAGGACAG+GGG - chr7_2:81846700-81846719 None:intergenic 60.0%
GGTTTCGACCGGCAAGGACA+GGG - chr7_2:81846701-81846720 None:intergenic 60.0%
TGGTTTCGACCGGCAAGGAC+AGG - chr7_2:81846702-81846721 None:intergenic 60.0%
GTCCTTGCCGGTCGAAACCA+TGG + chr7_2:81846702-81846721 Msa1081950:three_prime_UTR 60.0%
GGGGTTCCCCCTGTCCTTGC+CGG + chr7_2:81846690-81846709 Msa1081950:three_prime_UTR 70.0%
GGGGTTCCCCCTGTCCTTGC+CGG + chr7_2:81846690-81846709 Msa1081950:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81844783 81846819 81844783 ID=Msa1081950;Name=Msa1081950
chr7_2 mRNA 81844783 81846819 81844783 ID=Msa1081950-mRNA-1;Parent=Msa1081950;Name=Msa1081950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=347|1|1|1|0.75|0.6|5|305|162
chr7_2 exon 81844783 81844938 81844783 ID=Msa1081950-mRNA-1:exon:21047;Parent=Msa1081950-mRNA-1
chr7_2 exon 81844960 81845331 81844960 ID=Msa1081950-mRNA-1:exon:21048;Parent=Msa1081950-mRNA-1
chr7_2 exon 81845438 81845535 81845438 ID=Msa1081950-mRNA-1:exon:21049;Parent=Msa1081950-mRNA-1
chr7_2 exon 81845945 81846066 81845945 ID=Msa1081950-mRNA-1:exon:21050;Parent=Msa1081950-mRNA-1
chr7_2 exon 81846427 81846819 81846427 ID=Msa1081950-mRNA-1:exon:21051;Parent=Msa1081950-mRNA-1
chr7_2 five_prime_UTR 81844783 81844938 81844783 ID=Msa1081950-mRNA-1:five_prime_utr;Parent=Msa1081950-mRNA-1
chr7_2 five_prime_UTR 81844960 81845150 81844960 ID=Msa1081950-mRNA-1:five_prime_utr;Parent=Msa1081950-mRNA-1
chr7_2 CDS 81845151 81845331 81845151 ID=Msa1081950-mRNA-1:cds;Parent=Msa1081950-mRNA-1
chr7_2 CDS 81845438 81845535 81845438 ID=Msa1081950-mRNA-1:cds;Parent=Msa1081950-mRNA-1
chr7_2 CDS 81845945 81846066 81845945 ID=Msa1081950-mRNA-1:cds;Parent=Msa1081950-mRNA-1
chr7_2 CDS 81846427 81846514 81846427 ID=Msa1081950-mRNA-1:cds;Parent=Msa1081950-mRNA-1
chr7_2 three_prime_UTR 81846515 81846819 81846515 ID=Msa1081950-mRNA-1:three_prime_utr;Parent=Msa1081950-mRNA-1
Gene Sequence

>Msa1081950

ATGGCTCAAGTTTCAGAGAAGCAAGTAATGGTGGTCGGAGTCGACGACAGTGAATTTAGCACATACGCTCTTGAATGGACTCTGGATCATTTGGTTACTACACTTCCCAATCCAATCTTCAAACTTGTTCTTGTTTTTGCCAAACCTTCTCCTTCTACTAATGTTGGCTTCATAGGCCCTGCGGGAGCCGCTGAGATATTACCTATTGTGGAGGCCGATTTGAAAAGAACTGCTACTATTGTTATTGAAAGAGCTCAAGAAATCTGCACCAAGAGATCGGTAAAAGACGTAGTAGTGGAAGTTGTGGATGGAGATGCTAGAAATGTTCTTTGTGATGCTGTGGAGAAGCACCATGCTTCTATTTTGGTTGTAGGTAGTCATGGTTATGGAGCTATAAAAAGGGCTGTTTTAGGTAGTGTAAGTGACTATTGTGCTCATCATGCTCATTGCACTGTGATGATCGTGAAGAAGCCAAAACCCAAACACTGA

Protein sequence

>Msa1081950

MAQVSEKQVMVVGVDDSEFSTYALEWTLDHLVTTLPNPIFKLVLVFAKPSPSTNVGFIGPAGAAEILPIVEADLKRTATIVIERAQEICTKRSVKDVVVEVVDGDARNVLCDAVEKHHASILVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKPKH*