AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0317820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317820 MtrunA17_Chr2g0312931 98.925 372 4 0 1 372 1 372 0.0 753
Msa0317820 MtrunA17_Chr8g0376431 84.196 367 58 0 1 367 1 367 0.0 629
Msa0317820 MtrunA17_Chr8g0376451 76.648 364 85 0 4 367 3 366 0.0 596
Msa0317820 MtrunA17_Chr8g0376481 77.808 365 79 1 3 367 58 420 0.0 584
Msa0317820 MtrunA17_Chr8g0376471 75.616 365 87 1 3 367 2 364 0.0 568
Msa0317820 MtrunA17_Chr8g0376491 75.549 364 86 1 4 367 3 363 0.0 562
Msa0317820 MtrunA17_Chr8g0376461 58.904 365 94 2 3 367 2 310 5.89e-154 436
Msa0317820 MtrunA17_Chr8g0376521 76.000 150 24 1 4 153 3 140 4.34e-71 221
Msa0317820 MtrunA17_Chr8g0376521 76.667 60 14 0 308 367 141 200 4.08e-26 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0317820 AT3G14420.1 89.589 365 38 0 3 367 2 366 0.0 667
Msa0317820 AT3G14420.2 89.589 365 38 0 3 367 2 366 0.0 667
Msa0317820 AT3G14415.1 89.041 365 40 0 3 367 2 366 0.0 664
Msa0317820 AT3G14415.3 89.041 365 40 0 3 367 2 366 0.0 664
Msa0317820 AT3G14420.3 89.041 365 40 0 3 367 2 366 0.0 664
Msa0317820 AT3G14415.2 87.601 371 40 1 3 367 2 372 0.0 658
Msa0317820 AT4G18360.1 85.873 361 51 0 3 363 2 362 0.0 653
Msa0317820 AT4G18360.4 85.873 361 51 0 3 363 2 362 0.0 653
Msa0317820 AT3G14420.4 90.490 347 33 0 21 367 1 347 0.0 638
Msa0317820 AT3G14420.5 90.938 320 29 0 48 367 40 359 0.0 587
Msa0317820 AT3G14420.6 90.938 320 29 0 48 367 46 365 0.0 585
Msa0317820 AT4G18360.2 84.984 313 47 0 3 315 2 314 0.0 560
Msa0317820 AT3G14130.3 62.254 355 131 1 1 355 1 352 2.00e-163 462
Msa0317820 AT3G14130.1 62.254 355 131 1 1 355 1 352 2.00e-163 462
Msa0317820 AT3G14150.2 61.127 355 135 1 1 355 1 352 1.48e-160 455
Msa0317820 AT3G14150.1 61.127 355 135 1 1 355 1 352 1.48e-160 455
Msa0317820 AT4G18360.3 85.714 238 34 0 3 240 2 239 2.50e-153 432
Msa0317820 AT3G14130.4 63.636 308 109 1 48 355 4 308 5.10e-141 403
Msa0317820 AT3G14150.4 60.674 267 102 1 89 355 3 266 9.37e-113 330
Msa0317820 AT3G14150.3 60.674 267 102 1 89 355 3 266 9.37e-113 330
Msa0317820 AT3G14150.6 60.674 267 102 1 89 355 3 266 9.37e-113 330
Msa0317820 AT3G14130.2 63.008 246 88 1 110 355 2 244 2.09e-112 328
Msa0317820 AT3G14150.7 60.976 246 93 1 110 355 2 244 2.22e-109 321
Msa0317820 AT3G14150.5 60.976 246 93 1 110 355 2 244 2.22e-109 321

Find 103 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAATCTTACAAAATTT+TGG 0.098632 2_4:+15845506 None:intergenic
TCAACAAACACCTTTGAAAA+TGG 0.182730 2_4:-15845655 Msa0317820:exon
CTCACTTTGTTGATGAGATT+TGG 0.227880 2_4:-15846777 Msa0317820:five_prime_UTR
TTCACAAGTGGATGAGCTTT+TGG 0.250619 2_4:+15846735 None:intergenic
TGCACACTCTTGCTTAGTTT+TGG 0.272458 2_4:-15846553 Msa0317820:five_prime_UTR
TAATAGAGACAAAATAAGTA+TGG 0.291006 2_4:+15846670 None:intergenic
TTCCTCATACTCACTGATAT+TGG 0.304687 2_4:+15845623 None:intergenic
TTCTTAAAGTACCTCTTCTA+AGG 0.314628 2_4:+15842640 None:intergenic
TACCTCTTCTAAGGCACTTA+TGG 0.332153 2_4:+15842649 None:intergenic
AAACCACTATTGAATGAAAT+AGG 0.337849 2_4:-15841472 Msa0317820:three_prime_UTR
AGCACACCCTTCACAAGAAT+TGG 0.339129 2_4:+15842992 None:intergenic
GCTTTGGCACTTGGTGCCTC+TGG 0.345429 2_4:-15842450 Msa0317820:CDS
GTCTTCAAGGCTTTGGCACT+TGG 0.349066 2_4:-15842459 Msa0317820:CDS
AGATAAAATAAACACAAGTT+TGG 0.366023 2_4:+15841659 None:intergenic
GTATCTTTGTTATATATGTT+TGG 0.367865 2_4:+15846924 None:intergenic
GGACTTGCTTCATACGTTGC+TGG 0.373510 2_4:-15843308 Msa0317820:CDS
AACTACATGCTTTCTCTGTA+TGG 0.385424 2_4:-15841591 Msa0317820:three_prime_UTR
TAGTAGTCAAACGCCATCTT+TGG 0.400379 2_4:+15845582 None:intergenic
AACCGATGTCTTCAAGGCTT+TGG 0.403047 2_4:-15842466 Msa0317820:CDS
CCGTGGAACCGATGTCTTCA+AGG 0.420956 2_4:-15842472 Msa0317820:CDS
TGACCACATCGTTGCTGATT+GGG 0.421642 2_4:-15841785 Msa0317820:CDS
GCAAGAGCTGCATCAGCTGC+TGG 0.425139 2_4:-15844455 Msa0317820:CDS
GCTTCTCTGCGTCCAAGTCT+TGG 0.429282 2_4:+15844025 None:intergenic
ACACCTATTTCATTCAATAG+TGG 0.434833 2_4:+15841469 None:intergenic
TCCTTTCAGGCTAATGACTC+TGG 0.437087 2_4:-15843329 Msa0317820:intron
CAACAAACACCTTTGAAAAT+GGG 0.440880 2_4:-15845654 Msa0317820:exon
ACTCATCACGTAACATTTGA+AGG 0.447093 2_4:+15841860 None:intergenic
TCTTTCAGACATTGTCATCA+TGG 0.448736 2_4:-15844290 Msa0317820:intron
GTGACCACATCGTTGCTGAT+TGG 0.449542 2_4:-15841786 Msa0317820:CDS
ATTTCTATAATTTCTCACTA+AGG 0.458800 2_4:-15846602 Msa0317820:five_prime_UTR
GTGTATTCTCTGGCTGCTGA+TGG 0.460684 2_4:-15841904 Msa0317820:CDS
GCGTTTGACTACTATGCATC+TGG 0.462223 2_4:-15845573 Msa0317820:CDS
AACCAATATCAGTGAGTATG+AGG 0.469087 2_4:-15845625 Msa0317820:CDS
GCAGTTGGAGCAATCATGAT+TGG 0.471140 2_4:+15845272 None:intergenic
CTTTCAGACATTGTCATCAT+GGG 0.471894 2_4:-15844289 Msa0317820:intron
TTATTTAGGTGTACAAGGAC+AGG 0.473436 2_4:-15844120 Msa0317820:intron
TATCATTTGTACAATTAATG+AGG 0.476259 2_4:-15841690 Msa0317820:three_prime_UTR
TGAAACACACAAATTGTTTG+TGG 0.477331 2_4:-15846811 Msa0317820:five_prime_UTR
CTGGCTGCTGATGGAGAAGC+TGG 0.478038 2_4:-15841895 Msa0317820:CDS
GCAGTGCAAAGTGGTGCAGC+TGG 0.480581 2_4:-15842722 Msa0317820:CDS
GAAGTTGCTTCCACTGGACC+TGG 0.482888 2_4:-15844249 Msa0317820:CDS
GTCGAAGAAGTTGCTTCCAC+TGG 0.490758 2_4:-15844255 Msa0317820:CDS
GTCTTGGAGTATCAACAGTA+AGG 0.491873 2_4:+15844041 None:intergenic
GAGTTAACAATGGCTTTAAG+TGG 0.494236 2_4:-15841835 Msa0317820:CDS
TCTAAGGCACTTATGGTGGC+TGG 0.495998 2_4:+15842656 None:intergenic
GTTCTTTATTTAGGTGTACA+AGG 0.502004 2_4:-15844125 Msa0317820:intron
AGGACTGAACCTTGGAAAGA+TGG 0.503842 2_4:-15843437 Msa0317820:CDS
GACATGTCAACTACTGTCCT+TGG 0.511523 2_4:-15845311 Msa0317820:CDS
AATAGAGACAAAATAAGTAT+GGG 0.512364 2_4:+15846671 None:intergenic
ACTAAGGAGCTCCTCTCCAC+TGG 0.512485 2_4:-15846586 Msa0317820:five_prime_UTR
GAGAAGCTGATATCAAGAAC+AGG 0.524863 2_4:-15844009 Msa0317820:intron
ATCAGCTGCTGGAACAATCA+TGG 0.526902 2_4:-15844444 Msa0317820:intron
AAATTGATCGTACTCTGAGC+TGG 0.527284 2_4:-15843283 Msa0317820:CDS
TAGCCTTCCAATTCTTGTGA+AGG 0.531480 2_4:-15842999 Msa0317820:CDS
ACGCCCTGTGGTGTATTCTC+TGG 0.532490 2_4:-15841914 Msa0317820:CDS
CATAATCTTGGTATGGCACG+AGG 0.535981 2_4:+15841745 None:intergenic
TTACTTCGTCCATCTTTCCA+AGG 0.537036 2_4:+15843428 None:intergenic
CTCACATCGATAAGAATTCG+CGG 0.537846 2_4:+15845341 None:intergenic
CTCTTCTAAGGCACTTATGG+TGG 0.542151 2_4:+15842652 None:intergenic
TGGAGAAGCTGGTGTAAGAA+AGG 0.545364 2_4:-15841884 Msa0317820:CDS
AAGGCAGAAATTGCCAAAGA+TGG 0.545523 2_4:-15845595 Msa0317820:CDS
AGCCTTCCAATTCTTGTGAA+GGG 0.555081 2_4:-15842998 Msa0317820:CDS
AAGTGGATGCCGCTCACTCA+AGG 0.555841 2_4:-15841818 Msa0317820:CDS
AATCAAGTTGTCTTGCTCCA+TGG 0.556405 2_4:+15842684 None:intergenic
CAGAAAATGGCTCATCCCGA+GGG 0.557082 2_4:-15845245 Msa0317820:intron
AAGTTGTCTTGCTCCATGGT+TGG 0.558965 2_4:+15842688 None:intergenic
TCAGAAAATGGCTCATCCCG+AGG 0.565352 2_4:-15845246 Msa0317820:CDS
CACCATAAGTGCCTTAGAAG+AGG 0.567394 2_4:-15842651 Msa0317820:intron
GGAATTATTGTGTCCAACCA+TGG 0.572782 2_4:-15842701 Msa0317820:CDS
CTATTGAATGAAATAGGTGT+TGG 0.574292 2_4:-15841466 Msa0317820:three_prime_UTR
CCTTGAAGACATCGGTTCCA+CGG 0.578507 2_4:+15842472 None:intergenic
GAAGGGTGTGCTCACTGCTG+AGG 0.581066 2_4:-15842981 Msa0317820:CDS
GCAAGGCTAGCAGTGCAAAG+TGG 0.582697 2_4:-15842731 Msa0317820:CDS
GAGTGATTTCCTTGAGTGAG+CGG 0.593581 2_4:+15841809 None:intergenic
TGTGCATGCAGAGGAACCAG+TGG 0.600014 2_4:+15846570 None:intergenic
CATCTGGTGCTGAGGACCAG+TGG 0.600366 2_4:-15845557 Msa0317820:CDS
TGGAGCAATCATGATTGGCA+TGG 0.601089 2_4:+15845277 None:intergenic
CTACTATGCATCTGGTGCTG+AGG 0.603217 2_4:-15845565 Msa0317820:CDS
TAGGTTGTGAAAGCTGCTCA+AGG 0.605864 2_4:-15842528 Msa0317820:CDS
ACTGTTGATACTCCAAGACT+TGG 0.606482 2_4:-15844037 Msa0317820:CDS
CAAATCTCATCAACAAAGTG+AGG 0.615296 2_4:+15846778 None:intergenic
GCAGCCAGAGAATACACCAC+AGG 0.615884 2_4:+15841910 None:intergenic
ATCTCATCAACAAAGTGAGG+TGG 0.616647 2_4:+15846781 None:intergenic
TCTTGGAGTATCAACAGTAA+GGG 0.618142 2_4:+15844042 None:intergenic
TGATGAGTTTGAGTTAACAA+TGG 0.619751 2_4:-15841845 Msa0317820:CDS
TGATCGTACTCTGAGCTGGA+AGG 0.628034 2_4:-15843279 Msa0317820:intron
GGTGTGCTCACTGCTGAGGA+TGG 0.629660 2_4:-15842977 Msa0317820:intron
AAAGCGGATTCCAGGTCCAG+TGG 0.630109 2_4:+15844239 None:intergenic
ATGCAGAGGAACCAGTGGAG+AGG 0.637132 2_4:+15846575 None:intergenic
ATAGAGACAAAATAAGTATG+GGG 0.640177 2_4:+15846672 None:intergenic
AAGCAAGAGTGTGCATGCAG+AGG 0.642333 2_4:+15846561 None:intergenic
CACCCTTCACAAGAATTGGA+AGG 0.647640 2_4:+15842996 None:intergenic
TTGGATGGAGGTGTACGCCG+TGG 0.653698 2_4:-15842489 Msa0317820:CDS
CAGCCAGAGAATACACCACA+GGG 0.658781 2_4:+15841911 None:intergenic
TGCCAAAGCCTTGAAGACAT+CGG 0.666124 2_4:+15842464 None:intergenic
GTGAGTATGAGGAAATTGCA+AGG 0.666466 2_4:-15845614 Msa0317820:CDS
TGTCCCAATCAGCAACGATG+TGG 0.667462 2_4:+15841782 None:intergenic
TGTCTAGATTGGACGCCCTG+TGG 0.692710 2_4:-15841926 Msa0317820:intron
TATATGATATGATACTTGTG+TGG 0.704183 2_4:-15841564 Msa0317820:three_prime_UTR
GGCACGAGGATTAACACGAG+GGG 0.715789 2_4:+15841759 None:intergenic
TATACTCACAAATATGCCAG+AGG 0.718024 2_4:+15842434 None:intergenic
TGGCACGAGGATTAACACGA+GGG 0.726021 2_4:+15841758 None:intergenic
ATGGCACGAGGATTAACACG+AGG 0.730624 2_4:+15841757 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATATTTCAAAAAATAAA+TGG + chr2_4:15842474-15842493 None:intergenic 10.0%
!!! ATTTGATAAATTTGATTTTA+AGG + chr2_4:15846194-15846213 None:intergenic 10.0%
!! TAACTAATCAATAAAAAATG+TGG + chr2_4:15841573-15841592 None:intergenic 15.0%
!!! TTCAGTTTTATATTTTTACA+TGG - chr2_4:15841984-15842003 Msa0317820:intron 15.0%
!! TTTCAAATTGAAATTCAATA+TGG - chr2_4:15842377-15842396 Msa0317820:intron 15.0%
!!! AATCTAAAATTTCTAGATTT+AGG + chr2_4:15842437-15842456 None:intergenic 15.0%
!!! ACTACTAATTTTGTAATATT+AGG + chr2_4:15842523-15842542 None:intergenic 15.0%
!!! TATTTTCAAAATATTTGTGT+TGG - chr2_4:15842677-15842696 Msa0317820:CDS 15.0%
!!! TATGAAATCTTACAAAATTT+TGG + chr2_4:15842952-15842971 None:intergenic 15.0%
!! CATAATAAAGTAACATAATT+TGG + chr2_4:15843002-15843021 None:intergenic 15.0%
!! CAAATGTTTATTACAAAAAT+AGG + chr2_4:15844047-15844066 None:intergenic 15.0%
!!! ATATAAAACATTTTTACACA+TGG - chr2_4:15844083-15844102 Msa0317820:CDS 15.0%
!!! TATAAAACATTTTTACACAT+GGG - chr2_4:15844084-15844103 Msa0317820:CDS 15.0%
!!! ATCATTTTTAGTCTATATAA+TGG - chr2_4:15845357-15845376 Msa0317820:intron 15.0%
!!! TTTTACGACTATTTTATTAA+TGG - chr2_4:15845683-15845702 Msa0317820:intron 15.0%
!!! GTATCTTTGTTATATATGTT+TGG + chr2_4:15841534-15841553 None:intergenic 20.0%
!! AATAGAGACAAAATAAGTAT+GGG + chr2_4:15841787-15841806 None:intergenic 20.0%
!! TAATAGAGACAAAATAAGTA+TGG + chr2_4:15841788-15841807 None:intergenic 20.0%
!! ATTTCTATAATTTCTCACTA+AGG - chr2_4:15841853-15841872 Msa0317820:CDS 20.0%
!! ACAAAGAAACATGATTATAA+AGG + chr2_4:15842010-15842029 None:intergenic 20.0%
!!! ATTTTGTTAATCATGTTTTC+TGG - chr2_4:15842100-15842119 Msa0317820:intron 20.0%
!!! GTGAAGTTATATGATTTTTT+TGG - chr2_4:15842213-15842232 Msa0317820:intron 20.0%
!!! TTGGTTTTTTACTTATCTAT+CGG - chr2_4:15842232-15842251 Msa0317820:intron 20.0%
!!! TTTGAAAGTGTAATACTTAA+GGG + chr2_4:15842364-15842383 None:intergenic 20.0%
!!! ATTTGAAAGTGTAATACTTA+AGG + chr2_4:15842365-15842384 None:intergenic 20.0%
!!! TATTAGGATAATTTTGATGA+TGG + chr2_4:15842507-15842526 None:intergenic 20.0%
!!! ATCTTACAAAATTTTGGAAA+AGG + chr2_4:15842946-15842965 None:intergenic 20.0%
!! ATGTATAAAAACAAACTCAA+TGG - chr2_4:15843834-15843853 Msa0317820:intron 20.0%
!! TATTAAGAAAACTCTACAAT+AGG - chr2_4:15843862-15843881 Msa0317820:intron 20.0%
!!! TATTGATAACTTGATCAATA+AGG - chr2_4:15844678-15844697 Msa0317820:intron 20.0%
!! AAATTCTTCAATGTCAAAAA+TGG + chr2_4:15844995-15845014 None:intergenic 20.0%
!! ATTATATTAATGATAGAGGT+AGG + chr2_4:15845095-15845114 None:intergenic 20.0%
!! AGCAATTATATTAATGATAG+AGG + chr2_4:15845099-15845118 None:intergenic 20.0%
!!! ACAAAAGAAAACACTAATTT+TGG - chr2_4:15845332-15845351 Msa0317820:CDS 20.0%
!!! TCTATATAATGGAATTTTCA+AGG - chr2_4:15845368-15845387 Msa0317820:intron 20.0%
!! TATTAATAGAATTCTCAAAC+AGG + chr2_4:15845518-15845537 None:intergenic 20.0%
!!! TTGGTAGTAATTTCTTAATT+CGG - chr2_4:15846076-15846095 Msa0317820:intron 20.0%
!!! CAATTGTCGTAATAAAATTT+TGG + chr2_4:15846408-15846427 None:intergenic 20.0%
!! CAATTGTCTTCTATAATATA+TGG - chr2_4:15846422-15846441 Msa0317820:intron 20.0%
!!! TAATTTGTTCGTTAAGATAA+TGG + chr2_4:15846504-15846523 None:intergenic 20.0%
!! TATCATTTGTACAATTAATG+AGG - chr2_4:15846765-15846784 Msa0317820:five_prime_UTR 20.0%
!! AGATAAAATAAACACAAGTT+TGG + chr2_4:15846799-15846818 None:intergenic 20.0%
!!! TTTTAAAGAGAACTCATTTA+TGG - chr2_4:15846824-15846843 Msa0317820:five_prime_UTR 20.0%
!!! AGAAGAATTTTTTTCACAAG+TGG + chr2_4:15841735-15841754 None:intergenic 25.0%
!! CACGTTACTACAAAATTTTT+AGG - chr2_4:15841760-15841779 Msa0317820:CDS 25.0%
! ATAGAGACAAAATAAGTATG+GGG + chr2_4:15841786-15841805 None:intergenic 25.0%
! AAGAAAATAAAAAGAGACCT+TGG + chr2_4:15841931-15841950 None:intergenic 25.0%
! ATTAACCTTCTTATACAGAA+AGG + chr2_4:15842176-15842195 None:intergenic 25.0%
!!! AGGTTAATATTTTGAGACTT+TGG - chr2_4:15842188-15842207 Msa0317820:intron 25.0%
!!! TTAATATTTTGAGACTTTGG+TGG - chr2_4:15842191-15842210 Msa0317820:intron 25.0%
!!! ATTAGCATACTCCTTTTTTT+GGG - chr2_4:15842266-15842285 Msa0317820:intron 25.0%
! TACTTAAGGGAAATACTTAA+GGG + chr2_4:15842351-15842370 None:intergenic 25.0%
! ATACTTAAGGGAAATACTTA+AGG + chr2_4:15842352-15842371 None:intergenic 25.0%
! AAAAAGAGAACTAAACACTT+TGG + chr2_4:15842409-15842428 None:intergenic 25.0%
!! GTAACATAATTTGGTAACTT+AGG + chr2_4:15842993-15843012 None:intergenic 25.0%
! TGTTAATGTGCTGAAAAATA+TGG - chr2_4:15843068-15843087 Msa0317820:intron 25.0%
!!! GCTTTTTCTTTAAATTCACT+TGG - chr2_4:15843240-15843259 Msa0317820:intron 25.0%
!! ATTCTGTTCATTTTGTTAGA+AGG - chr2_4:15843303-15843322 Msa0317820:CDS 25.0%
!! TTCTGTTCATTTTGTTAGAA+GGG - chr2_4:15843304-15843323 Msa0317820:CDS 25.0%
! TTATCACAACTATGATAACT+TGG - chr2_4:15843710-15843729 Msa0317820:intron 25.0%
!!! ACTGATTTGAATATCTACAT+GGG + chr2_4:15844124-15844143 None:intergenic 25.0%
!!! AACTGATTTGAATATCTACA+TGG + chr2_4:15844125-15844144 None:intergenic 25.0%
! CAATACAGAACATATAACAA+TGG + chr2_4:15844305-15844324 None:intergenic 25.0%
! CATTGTTATATGTTCTGTAT+TGG - chr2_4:15844303-15844322 Msa0317820:intron 25.0%
! TGAAAAGGAAAAACATAACA+AGG - chr2_4:15844749-15844768 Msa0317820:intron 25.0%
! TTAATCTAACAGAGTTAGTT+AGG + chr2_4:15844783-15844802 None:intergenic 25.0%
!!! AGCATATTGGTTTTTGAAAA+AGG + chr2_4:15844901-15844920 None:intergenic 25.0%
! AACTCAAAATCTAAGCATAT+TGG + chr2_4:15844914-15844933 None:intergenic 25.0%
!! TTGACATTGAAGAATTTTGA+AGG - chr2_4:15844998-15845017 Msa0317820:intron 25.0%
! CATTAATATAATTGCTACCT+TGG - chr2_4:15845103-15845122 Msa0317820:intron 25.0%
!!! TTACTTGTAACTAGTTTTAG+AGG + chr2_4:15845237-15845256 None:intergenic 25.0%
! ACAAAACAACACTAAATCAT+TGG + chr2_4:15845396-15845415 None:intergenic 25.0%
!!! TGTTTTGTTTAATTTTGTGC+AGG - chr2_4:15845408-15845427 Msa0317820:intron 25.0%
!! CTTTTGAATACACTAGTATT+AGG - chr2_4:15845582-15845601 Msa0317820:CDS 25.0%
!! TTGTGTTGTTGAAATTACTT+AGG - chr2_4:15845908-15845927 Msa0317820:intron 25.0%
! CAATGAGCATGTAATATATT+GGG + chr2_4:15846059-15846078 None:intergenic 25.0%
!! CATTGTGTTTAAGATTAACA+GGG + chr2_4:15846300-15846319 None:intergenic 25.0%
!!! TGTCGTAATAAAATTTTGGT+CGG + chr2_4:15846404-15846423 None:intergenic 25.0%
! TTGTCTTCTATAATATATGG+AGG - chr2_4:15846425-15846444 Msa0317820:intron 25.0%
! AAATTATGCAATGTCTAGAT+TGG - chr2_4:15846518-15846537 Msa0317820:intron 25.0%
!! GATTAAGCTTTTCATAATCT+TGG + chr2_4:15846725-15846744 None:intergenic 25.0%
! TATATGATATGATACTTGTG+TGG - chr2_4:15846891-15846910 Msa0317820:five_prime_UTR 25.0%
! AAACCACTATTGAATGAAAT+AGG - chr2_4:15846983-15847002 Msa0317820:five_prime_UTR 25.0%
TGAAACACACAAATTGTTTG+TGG - chr2_4:15841644-15841663 Msa0317820:three_prime_UTR 30.0%
!!! GTTTTTTACTTATCTATCGG+TGG - chr2_4:15842235-15842254 Msa0317820:intron 30.0%
!!! GATTAGCATACTCCTTTTTT+TGG - chr2_4:15842265-15842284 Msa0317820:intron 30.0%
! GTTCAAACTCTGAGAAATAT+CGG - chr2_4:15842604-15842623 Msa0317820:intron 30.0%
ATACGTCATAGCTAAAAACA+CGG - chr2_4:15842740-15842759 Msa0317820:intron 30.0%
! TCAACAAACACCTTTGAAAA+TGG - chr2_4:15842800-15842819 Msa0317820:intron 30.0%
! CAACAAACACCTTTGAAAAT+GGG - chr2_4:15842801-15842820 Msa0317820:intron 30.0%
ATATGGTTGACAAACATTAC+AGG - chr2_4:15843085-15843104 Msa0317820:intron 30.0%
TTGACAAACATTACAGGTTT+AGG - chr2_4:15843091-15843110 Msa0317820:intron 30.0%
AGAAAAAGCAATTATACCCT+CGG + chr2_4:15843229-15843248 None:intergenic 30.0%
! ATTCACTTGGATTTCTGAAA+TGG - chr2_4:15843253-15843272 Msa0317820:intron 30.0%
! TTTAGCTTATATTACCCTTC+TGG - chr2_4:15843371-15843390 Msa0317820:intron 30.0%
GTACAAAACGATAATTGAGA+CGG - chr2_4:15843470-15843489 Msa0317820:CDS 30.0%
!!! AAGCTACATTTTGAAGCTTA+TGG + chr2_4:15843566-15843585 None:intergenic 30.0%
ACATGTCACTAAACACAAAA+GGG + chr2_4:15843946-15843965 None:intergenic 30.0%
TACATGTCACTAAACACAAA+AGG + chr2_4:15843947-15843966 None:intergenic 30.0%
!!! GTACAATTTTTTTCTTGTGC+AGG - chr2_4:15843964-15843983 Msa0317820:intron 30.0%
TCACATATAACTGGAAAAAG+CGG + chr2_4:15844235-15844254 None:intergenic 30.0%
! TTTTGTTGCTCACATATAAC+TGG + chr2_4:15844244-15844263 None:intergenic 30.0%
! ATTGGCCATGTTCTTTATTT+AGG - chr2_4:15844321-15844340 Msa0317820:intron 30.0%
GTACACCTAAATAAAGAACA+TGG + chr2_4:15844329-15844348 None:intergenic 30.0%
! GTTCTTTATTTAGGTGTACA+AGG - chr2_4:15844330-15844349 Msa0317820:intron 30.0%
TGTTATAGTGATTGCAATTG+TGG + chr2_4:15844640-15844659 None:intergenic 30.0%
ACATACGAGTTCATATGAAA+AGG - chr2_4:15844734-15844753 Msa0317820:intron 30.0%
! CCTGCAACATCAAAATTTTT+AGG + chr2_4:15844859-15844878 None:intergenic 30.0%
!! CCTAAAAATTTTGATGTTGC+AGG - chr2_4:15844856-15844875 Msa0317820:intron 30.0%
TTCTTCAATGTCAAAAATGG+TGG + chr2_4:15844992-15845011 None:intergenic 30.0%
! TTGATGTAAATTTTGCAGCA+AGG - chr2_4:15845707-15845726 Msa0317820:intron 30.0%
! TTCTTAAAGTACCTCTTCTA+AGG + chr2_4:15845818-15845837 None:intergenic 30.0%
CCAATGAGCATGTAATATAT+TGG + chr2_4:15846060-15846079 None:intergenic 30.0%
CCAATATATTACATGCTCAT+TGG - chr2_4:15846057-15846076 Msa0317820:intron 30.0%
CTGAATTCATAATTCTTGAG+TGG - chr2_4:15846258-15846277 Msa0317820:intron 30.0%
! CCATTGTGTTTAAGATTAAC+AGG + chr2_4:15846301-15846320 None:intergenic 30.0%
CCTGTTAATCTTAAACACAA+TGG - chr2_4:15846298-15846317 Msa0317820:intron 30.0%
!! GTCGTAATAAAATTTTGGTC+GGG + chr2_4:15846403-15846422 None:intergenic 30.0%
! TAAGATAATGGCAGTACTAA+TGG + chr2_4:15846492-15846511 None:intergenic 30.0%
! TGATGAGTTTGAGTTAACAA+TGG - chr2_4:15846610-15846629 Msa0317820:five_prime_UTR 30.0%
! AGCTTTTCATAATCTTGGTA+TGG + chr2_4:15846720-15846739 None:intergenic 30.0%
ACACCTATTTCATTCAATAG+TGG + chr2_4:15846989-15847008 None:intergenic 30.0%
CTATTGAATGAAATAGGTGT+TGG - chr2_4:15846989-15847008 Msa0317820:five_prime_UTR 30.0%
CAAATCTCATCAACAAAGTG+AGG + chr2_4:15841680-15841699 None:intergenic 35.0%
! CTCACTTTGTTGATGAGATT+TGG - chr2_4:15841678-15841697 Msa0317820:three_prime_UTR 35.0%
!!! TTGCTTAGTTTTGGAAACCA+AGG - chr2_4:15841911-15841930 Msa0317820:CDS 35.0%
CCTTCTTATACAGAAAGGAA+AGG + chr2_4:15842171-15842190 None:intergenic 35.0%
CCTTTCCTTTCTGTATAAGA+AGG - chr2_4:15842168-15842187 Msa0317820:intron 35.0%
!!! CATACTCCTTTTTTTGGGAA+CGG - chr2_4:15842271-15842290 Msa0317820:intron 35.0%
!!! ATACTCCTTTTTTTGGGAAC+GGG - chr2_4:15842272-15842291 Msa0317820:intron 35.0%
TGATCGACACTTCATATTGT+AGG - chr2_4:15842578-15842597 Msa0317820:intron 35.0%
! GTTATCTCTCCCATTTTCAA+AGG + chr2_4:15842813-15842832 None:intergenic 35.0%
AACCAATATCAGTGAGTATG+AGG - chr2_4:15842830-15842849 Msa0317820:intron 35.0%
TTCCTCATACTCACTGATAT+TGG + chr2_4:15842835-15842854 None:intergenic 35.0%
GTAGGTGTACAAAACATCAA+AGG + chr2_4:15843027-15843046 None:intergenic 35.0%
!! TCCAACTGCTTTTCAGAAAA+TGG - chr2_4:15843197-15843216 Msa0317820:intron 35.0%
GAAAAAGCAATTATACCCTC+GGG + chr2_4:15843228-15843247 None:intergenic 35.0%
ATCATGCATGACATGAATTG+TGG - chr2_4:15843343-15843362 Msa0317820:intron 35.0%
TAGCATGTAAGTATCCAGAA+GGG + chr2_4:15843388-15843407 None:intergenic 35.0%
ATAGCATGTAAGTATCCAGA+AGG + chr2_4:15843389-15843408 None:intergenic 35.0%
TCAGTGTAATAGCTTATCAG+TGG + chr2_4:15843754-15843773 None:intergenic 35.0%
CATGTCACTAAACACAAAAG+GGG + chr2_4:15843945-15843964 None:intergenic 35.0%
TCTTTCAGACATTGTCATCA+TGG - chr2_4:15844165-15844184 Msa0317820:intron 35.0%
CTTTCAGACATTGTCATCAT+GGG - chr2_4:15844166-15844185 Msa0317820:intron 35.0%
GGATTCAAGTGAAGAAGAAA+TGG + chr2_4:15844284-15844303 None:intergenic 35.0%
TTATTTAGGTGTACAAGGAC+AGG - chr2_4:15844335-15844354 Msa0317820:intron 35.0%
! TCTTGGAGTATCAACAGTAA+GGG + chr2_4:15844416-15844435 None:intergenic 35.0%
!! AATTTTGAAGGACTGAACCT+TGG - chr2_4:15845010-15845029 Msa0317820:intron 35.0%
AACGAATTGAGCGAACAAAT+TGG + chr2_4:15845271-15845290 None:intergenic 35.0%
TATACTCACAAATATGCCAG+AGG + chr2_4:15846024-15846043 None:intergenic 35.0%
TTCTTAATTCGGATCGTCTA+TGG - chr2_4:15846087-15846106 Msa0317820:intron 35.0%
CGATGCATTCATGTAGTTAA+CGG - chr2_4:15846119-15846138 Msa0317820:intron 35.0%
CATTCATGTAGTTAACGGTT+TGG - chr2_4:15846124-15846143 Msa0317820:intron 35.0%
!! GTAATAAAATTTTGGTCGGG+AGG + chr2_4:15846400-15846419 None:intergenic 35.0%
ACTCATCACGTAACATTTGA+AGG + chr2_4:15846598-15846617 None:intergenic 35.0%
!! GAGTTAACAATGGCTTTAAG+TGG - chr2_4:15846620-15846639 Msa0317820:five_prime_UTR 35.0%
AACTACATGCTTTCTCTGTA+TGG - chr2_4:15846864-15846883 Msa0317820:five_prime_UTR 35.0%
ATCTCATCAACAAAGTGAGG+TGG + chr2_4:15841677-15841696 None:intergenic 40.0%
! TTCACAAGTGGATGAGCTTT+TGG + chr2_4:15841723-15841742 None:intergenic 40.0%
! TGCACACTCTTGCTTAGTTT+TGG - chr2_4:15841902-15841921 Msa0317820:CDS 40.0%
CTTATCTATCGGTGGAACTT+CGG - chr2_4:15842243-15842262 Msa0317820:intron 40.0%
!!! TTTTGATGATGGTCTCAGTC+TGG + chr2_4:15842496-15842515 None:intergenic 40.0%
AACTAGTTGTAAGCAATCGC+AGG + chr2_4:15842656-15842675 None:intergenic 40.0%
GATCATATCAAACACGACAC+TGG + chr2_4:15842713-15842732 None:intergenic 40.0%
GTGAGTATGAGGAAATTGCA+AGG - chr2_4:15842841-15842860 Msa0317820:intron 40.0%
AAGGCAGAAATTGCCAAAGA+TGG - chr2_4:15842860-15842879 Msa0317820:intron 40.0%
TAGTAGTCAAACGCCATCTT+TGG + chr2_4:15842876-15842895 None:intergenic 40.0%
! TGTTTTCTTGAAGAGTCCAC+TGG + chr2_4:15842917-15842936 None:intergenic 40.0%
! GTTTTTGTTCTCAGAGTCGT+AGG + chr2_4:15843045-15843064 None:intergenic 40.0%
CTCACATCGATAAGAATTCG+CGG + chr2_4:15843117-15843136 None:intergenic 40.0%
!!! GCATGGAAATTTTGAAGCCA+AGG + chr2_4:15843164-15843183 None:intergenic 40.0%
!! GCCATTTTCTGAAAAGCAGT+TGG + chr2_4:15843201-15843220 None:intergenic 40.0%
! GTCTTGGAGTATCAACAGTA+AGG + chr2_4:15844417-15844436 None:intergenic 40.0%
ACTGTTGATACTCCAAGACT+TGG - chr2_4:15844418-15844437 Msa0317820:intron 40.0%
GAGAAGCTGATATCAAGAAC+AGG - chr2_4:15844446-15844465 Msa0317820:CDS 40.0%
TTACTTCGTCCATCTTTCCA+AGG + chr2_4:15845030-15845049 None:intergenic 40.0%
AAATTGATCGTACTCTGAGC+TGG - chr2_4:15845172-15845191 Msa0317820:intron 40.0%
! ATTTTGTGCAGGATGTGAAG+TGG - chr2_4:15845419-15845438 Msa0317820:intron 40.0%
TAGCCTTCCAATTCTTGTGA+AGG - chr2_4:15845456-15845475 Msa0317820:intron 40.0%
AGCCTTCCAATTCTTGTGAA+GGG - chr2_4:15845457-15845476 Msa0317820:intron 40.0%
GGAATTATTGTGTCCAACCA+TGG - chr2_4:15845754-15845773 Msa0317820:intron 40.0%
! AATCAAGTTGTCTTGCTCCA+TGG + chr2_4:15845774-15845793 None:intergenic 40.0%
!! TACCTCTTCTAAGGCACTTA+TGG + chr2_4:15845809-15845828 None:intergenic 40.0%
! AGGTCGTGTTCCTGTATTTT+TGG - chr2_4:15845947-15845966 Msa0317820:intron 40.0%
!!! CGTGTTCCTGTATTTTTGGA+TGG - chr2_4:15845951-15845970 Msa0317820:intron 40.0%
!!! GTTCCTGTATTTTTGGATGG+AGG - chr2_4:15845954-15845973 Msa0317820:intron 40.0%
ACACCTCCATCCAAAAATAC+AGG + chr2_4:15845960-15845979 None:intergenic 40.0%
! GATAATGGCAGTACTAATGG+TGG + chr2_4:15846489-15846508 None:intergenic 40.0%
! ACAAGTGGATGAGCTTTTGG+AGG + chr2_4:15841720-15841739 None:intergenic 45.0%
!!! TCCTTTTTTTGGGAACGGGA+GGG - chr2_4:15842276-15842295 Msa0317820:intron 45.0%
AGGGTTAAGGCTGATAGACT+TGG - chr2_4:15842295-15842314 Msa0317820:intron 45.0%
CGCAGGTGTTTGTGTTGTAT+CGG + chr2_4:15842639-15842658 None:intergenic 45.0%
!! TGTGAGCGTTGATAACTTGC+AGG - chr2_4:15842770-15842789 Msa0317820:intron 45.0%
GCGTTTGACTACTATGCATC+TGG - chr2_4:15842882-15842901 Msa0317820:intron 45.0%
GACATGTCAACTACTGTCCT+TGG - chr2_4:15843144-15843163 Msa0317820:intron 45.0%
TGGAGCAATCATGATTGGCA+TGG + chr2_4:15843181-15843200 None:intergenic 45.0%
GCAGTTGGAGCAATCATGAT+TGG + chr2_4:15843186-15843205 None:intergenic 45.0%
ATCAGCTGCTGGAACAATCA+TGG - chr2_4:15844011-15844030 Msa0317820:CDS 45.0%
! AACTGGAAAAAGCGGATTCC+AGG + chr2_4:15844227-15844246 None:intergenic 45.0%
GTGAGAAGAGCTGAAAAAGC+TGG - chr2_4:15844376-15844395 Msa0317820:intron 45.0%
CAAGAACAGGTAACTCGTTG+CGG - chr2_4:15844459-15844478 Msa0317820:CDS 45.0%
AGGACTGAACCTTGGAAAGA+TGG - chr2_4:15845018-15845037 Msa0317820:intron 45.0%
ATTGCTACCTTGGTCCTTTC+AGG - chr2_4:15845113-15845132 Msa0317820:intron 45.0%
! TCATTAGCCTGAAAGGACCA+AGG + chr2_4:15845123-15845142 None:intergenic 45.0%
TCCTTTCAGGCTAATGACTC+TGG - chr2_4:15845126-15845145 Msa0317820:intron 45.0%
! TCCAGAGTCATTAGCCTGAA+AGG + chr2_4:15845130-15845149 None:intergenic 45.0%
! GAGCGAACAAATTGGTGACA+TGG + chr2_4:15845263-15845282 None:intergenic 45.0%
CACCCTTCACAAGAATTGGA+AGG + chr2_4:15845462-15845481 None:intergenic 45.0%
AGCACACCCTTCACAAGAAT+TGG + chr2_4:15845466-15845485 None:intergenic 45.0%
AAGTTGTCTTGCTCCATGGT+TGG + chr2_4:15845770-15845789 None:intergenic 45.0%
!! CTCTTCTAAGGCACTTATGG+TGG + chr2_4:15845806-15845825 None:intergenic 45.0%
CACCATAAGTGCCTTAGAAG+AGG - chr2_4:15845804-15845823 Msa0317820:intron 45.0%
TAGGTTGTGAAAGCTGCTCA+AGG - chr2_4:15845927-15845946 Msa0317820:intron 45.0%
AACCGATGTCTTCAAGGCTT+TGG - chr2_4:15845989-15846008 Msa0317820:intron 45.0%
TGCCAAAGCCTTGAAGACAT+CGG + chr2_4:15845994-15846013 None:intergenic 45.0%
GACCTCTGGCTGAAATAATC+AGG - chr2_4:15846349-15846368 Msa0317820:intron 45.0%
CTCCTGATTATTTCAGCCAG+AGG + chr2_4:15846354-15846373 None:intergenic 45.0%
TGGAGAAGCTGGTGTAAGAA+AGG - chr2_4:15846571-15846590 Msa0317820:five_prime_UTR 45.0%
GAGTGATTTCCTTGAGTGAG+CGG + chr2_4:15846649-15846668 None:intergenic 45.0%
! TGACCACATCGTTGCTGATT+GGG - chr2_4:15846670-15846689 Msa0317820:five_prime_UTR 45.0%
CATAATCTTGGTATGGCACG+AGG + chr2_4:15846713-15846732 None:intergenic 45.0%
! AAGCAAGAGTGTGCATGCAG+AGG + chr2_4:15841897-15841916 None:intergenic 50.0%
!!! CTCCTTTTTTTGGGAACGGG+AGG - chr2_4:15842275-15842294 Msa0317820:intron 50.0%
ACCCTCCCGTTCCCAAAAAA+AGG + chr2_4:15842280-15842299 None:intergenic 50.0%
!! TTTTGGGAACGGGAGGGTTA+AGG - chr2_4:15842282-15842301 Msa0317820:intron 50.0%
! CTACTATGCATCTGGTGCTG+AGG - chr2_4:15842890-15842909 Msa0317820:intron 50.0%
TCAGAAAATGGCTCATCCCG+AGG - chr2_4:15843209-15843228 Msa0317820:intron 50.0%
CAGAAAATGGCTCATCCCGA+GGG - chr2_4:15843210-15843229 Msa0317820:intron 50.0%
GTCGAAGAAGTTGCTTCCAC+TGG - chr2_4:15844200-15844219 Msa0317820:intron 50.0%
! GGACTTGCTTCATACGTTGC+TGG - chr2_4:15845147-15845166 Msa0317820:intron 50.0%
TGATCGTACTCTGAGCTGGA+AGG - chr2_4:15845176-15845195 Msa0317820:intron 50.0%
! TCTAAGGCACTTATGGTGGC+TGG + chr2_4:15845802-15845821 None:intergenic 50.0%
!! CCTTGAAGACATCGGTTCCA+CGG + chr2_4:15845986-15846005 None:intergenic 50.0%
! GTCTTCAAGGCTTTGGCACT+TGG - chr2_4:15845996-15846015 Msa0317820:intron 50.0%
CAGACGCGCAATCAACACTT+CGG + chr2_4:15846241-15846260 None:intergenic 50.0%
TAGTACCCTAGTTCGACCTC+TGG - chr2_4:15846335-15846354 Msa0317820:intron 50.0%
TTCAGCCAGAGGTCGAACTA+GGG + chr2_4:15846343-15846362 None:intergenic 50.0%
TTTCAGCCAGAGGTCGAACT+AGG + chr2_4:15846344-15846363 None:intergenic 50.0%
CAGCCAGAGAATACACCACA+GGG + chr2_4:15846547-15846566 None:intergenic 50.0%
GTGTATTCTCTGGCTGCTGA+TGG - chr2_4:15846551-15846570 Msa0317820:five_prime_UTR 50.0%
GTGACCACATCGTTGCTGAT+TGG - chr2_4:15846669-15846688 Msa0317820:five_prime_UTR 50.0%
TGTCCCAATCAGCAACGATG+TGG + chr2_4:15846676-15846695 None:intergenic 50.0%
TGGCACGAGGATTAACACGA+GGG + chr2_4:15846700-15846719 None:intergenic 50.0%
ATGGCACGAGGATTAACACG+AGG + chr2_4:15846701-15846720 None:intergenic 50.0%
ACTAAGGAGCTCCTCTCCAC+TGG - chr2_4:15841869-15841888 Msa0317820:CDS 55.0%
ATGCAGAGGAACCAGTGGAG+AGG + chr2_4:15841883-15841902 None:intergenic 55.0%
TGTGCATGCAGAGGAACCAG+TGG + chr2_4:15841888-15841907 None:intergenic 55.0%
TCAAACACGACACTGGCACG+TGG + chr2_4:15842706-15842725 None:intergenic 55.0%
GAAGTTGCTTCCACTGGACC+TGG - chr2_4:15844206-15844225 Msa0317820:intron 55.0%
! AAAGCGGATTCCAGGTCCAG+TGG + chr2_4:15844219-15844238 None:intergenic 55.0%
GCTTCTCTGCGTCCAAGTCT+TGG + chr2_4:15844433-15844452 None:intergenic 55.0%
GCAAGGCTAGCAGTGCAAAG+TGG - chr2_4:15845724-15845743 Msa0317820:intron 55.0%
CCGTGGAACCGATGTCTTCA+AGG - chr2_4:15845983-15846002 Msa0317820:intron 55.0%
TGTCTAGATTGGACGCCCTG+TGG - chr2_4:15846529-15846548 Msa0317820:intron 55.0%
ACGCCCTGTGGTGTATTCTC+TGG - chr2_4:15846541-15846560 Msa0317820:intron 55.0%
GCAGCCAGAGAATACACCAC+AGG + chr2_4:15846548-15846567 None:intergenic 55.0%
AAGTGGATGCCGCTCACTCA+AGG - chr2_4:15846637-15846656 Msa0317820:five_prime_UTR 55.0%
GGCACGAGGATTAACACGAG+GGG + chr2_4:15846699-15846718 None:intergenic 55.0%
! CATCTGGTGCTGAGGACCAG+TGG - chr2_4:15842898-15842917 Msa0317820:intron 60.0%
GCAAGAGCTGCATCAGCTGC+TGG - chr2_4:15844000-15844019 Msa0317820:intron 60.0%
! GAAGGGTGTGCTCACTGCTG+AGG - chr2_4:15845474-15845493 Msa0317820:intron 60.0%
GGTGTGCTCACTGCTGAGGA+TGG - chr2_4:15845478-15845497 Msa0317820:intron 60.0%
GCAGTGCAAAGTGGTGCAGC+TGG - chr2_4:15845733-15845752 Msa0317820:intron 60.0%
! TTGGATGGAGGTGTACGCCG+TGG - chr2_4:15845966-15845985 Msa0317820:intron 60.0%
!! GCTTTGGCACTTGGTGCCTC+TGG - chr2_4:15846005-15846024 Msa0317820:intron 60.0%
CTGGCTGCTGATGGAGAAGC+TGG - chr2_4:15846560-15846579 Msa0317820:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 15841460 15847017 15841460 ID=Msa0317820;Name=Msa0317820
chr2_4 mRNA 15841460 15847017 15841460 ID=Msa0317820-mRNA-1;Parent=Msa0317820;Name=Msa0317820-mRNA-1;_AED=0.04;_eAED=0.04;_QI=500|1|1|1|0.90|0.83|12|284|372
chr2_4 exon 15841460 15841941 15841460 ID=Msa0317820-mRNA-1:exon:5970;Parent=Msa0317820-mRNA-1
chr2_4 exon 15842443 15842547 15842443 ID=Msa0317820-mRNA-1:exon:5969;Parent=Msa0317820-mRNA-1
chr2_4 exon 15842652 15842752 15842652 ID=Msa0317820-mRNA-1:exon:5968;Parent=Msa0317820-mRNA-1
chr2_4 exon 15842978 15843047 15842978 ID=Msa0317820-mRNA-1:exon:5967;Parent=Msa0317820-mRNA-1
chr2_4 exon 15843280 15843342 15843280 ID=Msa0317820-mRNA-1:exon:5966;Parent=Msa0317820-mRNA-1
chr2_4 exon 15843432 15843498 15843432 ID=Msa0317820-mRNA-1:exon:5965;Parent=Msa0317820-mRNA-1
chr2_4 exon 15844010 15844134 15844010 ID=Msa0317820-mRNA-1:exon:5964;Parent=Msa0317820-mRNA-1
chr2_4 exon 15844227 15844304 15844227 ID=Msa0317820-mRNA-1:exon:5963;Parent=Msa0317820-mRNA-1
chr2_4 exon 15844445 15844491 15844445 ID=Msa0317820-mRNA-1:exon:5962;Parent=Msa0317820-mRNA-1
chr2_4 exon 15845246 15845370 15845246 ID=Msa0317820-mRNA-1:exon:5961;Parent=Msa0317820-mRNA-1
chr2_4 exon 15845519 15845685 15845519 ID=Msa0317820-mRNA-1:exon:5960;Parent=Msa0317820-mRNA-1
chr2_4 exon 15846545 15847017 15846545 ID=Msa0317820-mRNA-1:exon:5959;Parent=Msa0317820-mRNA-1
chr2_4 five_prime_UTR 15846545 15847017 15846545 ID=Msa0317820-mRNA-1:five_prime_utr;Parent=Msa0317820-mRNA-1
chr2_4 five_prime_UTR 15845659 15845685 15845659 ID=Msa0317820-mRNA-1:five_prime_utr;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15845519 15845658 15845519 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15845246 15845370 15845246 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15844445 15844491 15844445 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15844227 15844304 15844227 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15844010 15844134 15844010 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15843432 15843498 15843432 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15843280 15843342 15843280 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15842978 15843047 15842978 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15842652 15842752 15842652 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15842443 15842547 15842443 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 CDS 15841744 15841941 15841744 ID=Msa0317820-mRNA-1:cds;Parent=Msa0317820-mRNA-1
chr2_4 three_prime_UTR 15841460 15841743 15841460 ID=Msa0317820-mRNA-1:three_prime_utr;Parent=Msa0317820-mRNA-1
Gene Sequence

>Msa0317820

ATGGGAGAGATAACCAATATCAGTGAGTATGAGGAAATTGCAAGGCAGAAATTGCCAAAGATGGCGTTTGACTACTATGCATCTGGTGCTGAGGACCAGTGGACTCTTCAAGAAAACAGAAATGCCTTTTCCAAAATTTTGTTTAGGCCGCGAATTCTTATCGATGTGAGCAAGATAGACATGTCAACTACTGTCCTTGGCTTCAAAATTTCCATGCCAATCATGATTGCTCCAACTGCTTTTCAGAAAATGGCTCATCCCGAGGGAGAATATGCAACAGCAAGAGCTGCATCAGCTGCTGGAACAATCATGACATTGTCATCATGGGCGACTTCAAGTGTCGAAGAAGTTGCTTCCACTGGACCTGGAATCCGCTTTTTCCAGTTATATGTGTACAAGGACAGGAATGTTGTTGCTCAGCTTGTGAGAAGAGCTGAAAAAGCTGGATTCAAAGCTATTGCCCTTACTGTTGATACTCCAAGACTTGGACGCAGAGAAGCTGATATCAAGAACAGATTTGTTCTGCCACCATTTTTGACATTGAAGAATTTTGAAGGACTGAACCTTGGAAAGATGGACGAAGCTAATGACTCTGGACTTGCTTCATACGTTGCTGGTCAAATTGATCGTACTCTGAGCTGGAAGGATGTGAAGTGGCTTCAGACAATCACTAGCCTTCCAATTCTTGTGAAGGGTGTGCTCACTGCTGAGGATGCAAGGCTAGCAGTGCAAAGTGGTGCAGCTGGAATTATTGTGTCCAACCATGGAGCAAGACAACTTGATTATGTTCCAGCCACCATAAGTGCCTTAGAAGAGGTTGTGAAAGCTGCTCAAGGTCGTGTTCCTGTATTTTTGGATGGAGGTGTACGCCGTGGAACCGATGTCTTCAAGGCTTTGGCACTTGGTGCCTCTGGCATATTTATTGGACGCCCTGTGGTGTATTCTCTGGCTGCTGATGGAGAAGCTGGTGTAAGAAAGGTCCTTCAAATGTTACGTGATGAGTTTGAGTTAACAATGGCTTTAAGTGGATGCCGCTCACTCAAGGAAATCACTCGTGACCACATCGTTGCTGATTGGGACACCCCTCGTGTTAATCCTCGTGCCATACCAAGATTATGA

Protein sequence

>Msa0317820

MGEITNISEYEEIARQKLPKMAFDYYASGAEDQWTLQENRNAFSKILFRPRILIDVSKIDMSTTVLGFKISMPIMIAPTAFQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAEKAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGLNLGKMDEANDSGLASYVAGQIDRTLSWKDVKWLQTITSLPILVKGVLTAEDARLAVQSGAAGIIVSNHGARQLDYVPATISALEEVVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAADGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRDHIVADWDTPRVNPRAIPRL*