Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0447130 | XP_013459167.1 | 96.164 | 365 | 14 | 0 | 1 | 365 | 1 | 365 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0447130 | A0A072V4V0 | 96.164 | 365 | 14 | 0 | 1 | 365 | 1 | 365 | 0.0 | 686 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020540 | Msa0447130 | 0.813424 | 2.577252e-51 | -8.615850e-47 |
| Msa0032980 | Msa0447130 | 0.829324 | 5.486841e-55 | -8.615850e-47 |
| Msa0062340 | Msa0447130 | 0.820788 | 5.699770e-53 | -8.615850e-47 |
| Msa0074360 | Msa0447130 | 0.807184 | 5.721691e-50 | -8.615850e-47 |
| Msa0075530 | Msa0447130 | 0.810035 | 1.407689e-50 | -8.615850e-47 |
| Msa0078130 | Msa0447130 | 0.816932 | 4.285480e-52 | -8.615850e-47 |
| Msa0091350 | Msa0447130 | 0.833341 | 5.637211e-56 | -8.615850e-47 |
| Msa0122330 | Msa0447130 | 0.800963 | 1.126415e-48 | -8.615850e-47 |
| Msa0127340 | Msa0447130 | 0.810069 | 1.384697e-50 | -8.615850e-47 |
| Msa0140380 | Msa0447130 | 0.831752 | 1.396769e-55 | -8.615850e-47 |
| Msa0159590 | Msa0447130 | 0.818351 | 2.050854e-52 | -8.615850e-47 |
| Msa0159620 | Msa0447130 | 0.829602 | 4.697023e-55 | -8.615850e-47 |
| Msa0165830 | Msa0447130 | 0.832270 | 1.040156e-55 | -8.615850e-47 |
| Msa0168050 | Msa0447130 | 0.805663 | 1.197599e-49 | -8.615850e-47 |
| Msa0232760 | Msa0447130 | 0.813154 | 2.954463e-51 | -8.615850e-47 |
| Msa0367520 | Msa0447130 | 0.805005 | 1.644696e-49 | -8.615850e-47 |
| Msa0368860 | Msa0447130 | 0.815032 | 1.137662e-51 | -8.615850e-47 |
| Msa0373170 | Msa0447130 | 0.800836 | 1.195251e-48 | -8.615850e-47 |
| Msa0373590 | Msa0447130 | 0.811487 | 6.831952e-51 | -8.615850e-47 |
| Msa0383000 | Msa0447130 | 0.844625 | 6.731447e-59 | -8.615850e-47 |
| Msa0420670 | Msa0447130 | 0.801495 | 8.763802e-49 | -8.615850e-47 |
| Msa0421750 | Msa0447130 | 0.804297 | 2.311802e-49 | -8.615850e-47 |
| Msa0432010 | Msa0447130 | 0.807594 | 4.682647e-50 | -8.615850e-47 |
| Msa0433150 | Msa0447130 | 0.835434 | 1.682015e-56 | -8.615850e-47 |
| Msa0447130 | Msa0462780 | 0.807372 | 5.220593e-50 | -8.615850e-47 |
| Msa0447130 | Msa0466520 | 0.821025 | 5.028168e-53 | -8.615850e-47 |
| Msa0447130 | Msa0467690 | 0.803168 | 3.964048e-49 | -8.615850e-47 |
| Msa0447130 | Msa0480730 | 0.839330 | 1.690145e-57 | -8.615850e-47 |
| Msa0447130 | Msa0481890 | 0.803437 | 3.487278e-49 | -8.615850e-47 |
| Msa0447130 | Msa0513080 | 0.814008 | 1.916720e-51 | -8.615850e-47 |
| Msa0447130 | Msa0513560 | 0.811114 | 8.231874e-51 | -8.615850e-47 |
| Msa0447130 | Msa0514020 | 0.808158 | 3.553874e-50 | -8.615850e-47 |
| Msa0447130 | Msa0520870 | 0.805612 | 1.227274e-49 | -8.615850e-47 |
| Msa0447130 | Msa0521680 | 0.812743 | 3.635044e-51 | -8.615850e-47 |
| Msa0447130 | Msa0524520 | 0.804358 | 2.245017e-49 | -8.615850e-47 |
| Msa0447130 | Msa0550590 | 0.811885 | 5.596858e-51 | -8.615850e-47 |
| Msa0447130 | Msa0553750 | 0.815113 | 1.091800e-51 | -8.615850e-47 |
| Msa0447130 | Msa0554300 | 0.804575 | 2.022447e-49 | -8.615850e-47 |
| Msa0447130 | Msa0559100 | 0.827938 | 1.186449e-54 | -8.615850e-47 |
| Msa0447130 | Msa0561560 | 0.839716 | 1.341315e-57 | -8.615850e-47 |
| Msa0447130 | Msa0563900 | 0.817320 | 3.506263e-52 | -8.615850e-47 |
| Msa0447130 | Msa0606100 | 0.845623 | 3.618349e-59 | -8.615850e-47 |
| Msa0447130 | Msa0607800 | 0.832591 | 8.660723e-56 | -8.615850e-47 |
| Msa0447130 | Msa0608350 | 0.808031 | 3.782597e-50 | -8.615850e-47 |
| Msa0447130 | Msa0613580 | 0.836774 | 7.684685e-57 | -8.615850e-47 |
| Msa0447130 | Msa0613630 | 0.847707 | 9.751321e-60 | -8.615850e-47 |
| Msa0447130 | Msa0615630 | 0.822993 | 1.759078e-53 | -8.615850e-47 |
| Msa0447130 | Msa0620500 | 0.829027 | 6.475844e-55 | -8.615850e-47 |
| Msa0447130 | Msa0621710 | 0.839349 | 1.671552e-57 | -8.615850e-47 |
| Msa0447130 | Msa0647050 | 0.814635 | 1.393203e-51 | -8.615850e-47 |
| Msa0447130 | Msa0648040 | 0.823552 | 1.302821e-53 | -8.615850e-47 |
| Msa0447130 | Msa0648760 | 0.817808 | 2.720747e-52 | -8.615850e-47 |
| Msa0447130 | Msa0654740 | 0.825083 | 5.686123e-54 | -8.615850e-47 |
| Msa0447130 | Msa0668900 | 0.808483 | 3.029378e-50 | -8.615850e-47 |
| Msa0447130 | Msa0687090 | 0.801342 | 9.421735e-49 | -8.615850e-47 |
| Msa0447130 | Msa0690740 | 0.822724 | 2.032379e-53 | -8.615850e-47 |
| Msa0447130 | Msa0691270 | 0.820891 | 5.398148e-53 | -8.615850e-47 |
| Msa0447130 | Msa0698730 | 0.833598 | 4.865693e-56 | -8.615850e-47 |
| Msa0447130 | Msa0700210 | 0.804216 | 2.403218e-49 | -8.615850e-47 |
| Msa0447130 | Msa0709440 | 0.802008 | 6.877669e-49 | -8.615850e-47 |
| Msa0447130 | Msa0714520 | 0.827242 | 1.742876e-54 | -8.615850e-47 |
| Msa0447130 | Msa0717900 | 0.832857 | 7.438553e-56 | -8.615850e-47 |
| Msa0447130 | Msa0722220 | 0.825784 | 3.881839e-54 | -8.615850e-47 |
| Msa0447130 | Msa0743440 | 0.818534 | 1.863882e-52 | -8.615850e-47 |
| Msa0447130 | Msa0745720 | 0.806641 | 7.451872e-50 | -8.615850e-47 |
| Msa0447130 | Msa0747740 | 0.800643 | 1.308750e-48 | -8.615850e-47 |
| Msa0447130 | Msa0756820 | 0.804216 | 2.402822e-49 | -8.615850e-47 |
| Msa0447130 | Msa0763550 | 0.822008 | 2.981131e-53 | -8.615850e-47 |
| Msa0447130 | Msa0773630 | 0.821330 | 4.275300e-53 | -8.615850e-47 |
| Msa0447130 | Msa0805680 | 0.829592 | 4.721364e-55 | -8.615850e-47 |
| Msa0447130 | Msa0811020 | 0.829188 | 5.920377e-55 | -8.615850e-47 |
| Msa0447130 | Msa0816080 | 0.813779 | 2.153557e-51 | -8.615850e-47 |
| Msa0447130 | Msa0818880 | 0.801277 | 9.711894e-49 | -8.615850e-47 |
| Msa0447130 | Msa0821160 | 0.811205 | 7.865531e-51 | -8.615850e-47 |
| Msa0447130 | Msa0863620 | 0.834332 | 3.186713e-56 | -8.615850e-47 |
| Msa0447130 | Msa0867110 | 0.804468 | 2.129400e-49 | -8.615850e-47 |
| Msa0447130 | Msa0879920 | 0.822587 | 2.186706e-53 | -8.615850e-47 |
| Msa0447130 | Msa0900760 | 0.803169 | 3.962317e-49 | -8.615850e-47 |
| Msa0447130 | Msa0909760 | 0.812028 | 5.208838e-51 | -8.615850e-47 |
| Msa0447130 | Msa0924430 | 0.833636 | 4.759324e-56 | -8.615850e-47 |
| Msa0447130 | Msa0931590 | 0.835778 | 1.376237e-56 | -8.615850e-47 |
| Msa0447130 | Msa0989370 | 0.801267 | 9.760765e-49 | -8.615850e-47 |
| Msa0447130 | Msa1008670 | 0.804599 | 1.999527e-49 | -8.615850e-47 |
| Msa0447130 | Msa1033920 | 0.813056 | 3.104295e-51 | -8.615850e-47 |
| Msa0447130 | Msa1035570 | 0.812972 | 3.239659e-51 | -8.615850e-47 |
| Msa0447130 | Msa1035610 | 0.807936 | 3.961554e-50 | -8.615850e-47 |
| Msa0447130 | Msa1035650 | 0.813719 | 2.219586e-51 | -8.615850e-47 |
| Msa0447130 | Msa1042880 | 0.801100 | 1.055780e-48 | -8.615850e-47 |
| Msa0447130 | Msa1059020 | 0.812448 | 4.218647e-51 | -8.615850e-47 |
| Msa0447130 | Msa1060900 | 0.813871 | 2.054911e-51 | -8.615850e-47 |
| Msa0447130 | Msa1076020 | 0.806712 | 7.200545e-50 | -8.615850e-47 |
| Msa0447130 | Msa1078880 | 0.801564 | 8.485842e-49 | -8.615850e-47 |
| Msa0447130 | Msa1082380 | 0.812797 | 3.537851e-51 | -8.615850e-47 |
| Msa0447130 | Msa1084530 | 0.802459 | 5.555439e-49 | -8.615850e-47 |
| Msa0447130 | Msa1104220 | 0.818017 | 2.440361e-52 | -8.615850e-47 |
| Msa0447130 | Msa1125820 | 0.809854 | 1.540065e-50 | -8.615850e-47 |
| Msa0447130 | Msa1125990 | 0.807075 | 6.032969e-50 | -8.615850e-47 |
| Msa0447130 | Msa1127280 | 0.832726 | 8.019691e-56 | -8.615850e-47 |
| Msa0447130 | Msa1127470 | 0.802426 | 5.642124e-49 | -8.615850e-47 |
| Msa0447130 | Msa1139050 | 0.832948 | 7.061215e-56 | -8.615850e-47 |
| Msa0447130 | Msa1148630 | 0.819408 | 1.179730e-52 | -8.615850e-47 |
| Msa0447130 | Msa1159590 | 0.802226 | 6.204367e-49 | -8.615850e-47 |
| Msa0447130 | Msa1162880 | 0.819561 | 1.088951e-52 | -8.615850e-47 |
| Msa0447130 | Msa1163180 | 0.805950 | 1.042144e-49 | -8.615850e-47 |
| Msa0447130 | Msa1165480 | 0.827253 | 1.732437e-54 | -8.615850e-47 |
| Msa0447130 | Msa1169190 | 0.803255 | 3.804372e-49 | -8.615850e-47 |
| Msa0447130 | Msa1201780 | 0.829488 | 5.006134e-55 | -8.615850e-47 |
| Msa0447130 | Msa1213830 | 0.835002 | 2.161314e-56 | -8.615850e-47 |
| Msa0447130 | Msa1214350 | 0.830550 | 2.757866e-55 | -8.615850e-47 |
| Msa0447130 | Msa1215980 | 0.829720 | 4.394749e-55 | -8.615850e-47 |
| Msa0447130 | Msa1218820 | 0.815715 | 8.019112e-52 | -8.615850e-47 |
| Msa0447130 | Msa1223390 | 0.811732 | 6.043057e-51 | -8.615850e-47 |
| Msa0447130 | Msa1244240 | 0.817488 | 3.212435e-52 | -8.615850e-47 |
| Msa0447130 | Msa1254420 | 0.802961 | 4.374868e-49 | -8.615850e-47 |
| Msa0447130 | Msa1254540 | 0.846481 | 2.113821e-59 | -8.615850e-47 |
| Msa0447130 | Msa1261050 | 0.820691 | 6.001668e-53 | -8.615850e-47 |
| Msa0447130 | Msa1263740 | 0.867813 | 1.037497e-65 | -8.615850e-47 |
| Msa0447130 | Msa1263780 | 0.846120 | 2.652114e-59 | -8.615850e-47 |
| Msa0447130 | Msa1294460 | 0.829051 | 6.391674e-55 | -8.615850e-47 |
| Msa0447130 | Msa1294790 | 0.819449 | 1.154776e-52 | -8.615850e-47 |
| Msa0447130 | Msa1300460 | 0.838113 | 3.486308e-57 | -8.615850e-47 |
| Msa0447130 | Msa1301820 | 0.804412 | 2.186940e-49 | -8.615850e-47 |
| Msa0447130 | Msa1305920 | 0.823618 | 1.256910e-53 | -8.615850e-47 |
| Msa0447130 | Msa1332950 | 0.825313 | 5.019023e-54 | -8.615850e-47 |
| Msa0447130 | Msa1338210 | 0.804069 | 2.577992e-49 | -8.615850e-47 |
| Msa0447130 | Msa1339170 | 0.840508 | 8.335850e-58 | -8.615850e-47 |
| Msa0447130 | Msa1362130 | 0.802528 | 5.374833e-49 | -8.615850e-47 |
| Msa0447130 | Msa1368750 | 0.810975 | 8.820292e-51 | -8.615850e-47 |
| Msa0447130 | Msa1374790 | 0.808911 | 2.453655e-50 | -8.615850e-47 |
| Msa0447130 | Msa1381470 | 0.805415 | 1.349983e-49 | -8.615850e-47 |
| Msa0447130 | Msa1393560 | 0.807245 | 5.553467e-50 | -8.615850e-47 |
| Msa0447130 | Msa1406720 | 0.820106 | 8.172038e-53 | -8.615850e-47 |
| Msa0447130 | Msa1426320 | 0.816625 | 5.020431e-52 | -8.615850e-47 |
| Msa0447130 | Msa1434640 | 0.810233 | 1.275966e-50 | -8.615850e-47 |
| Msa0447130 | Msa1450190 | 0.839038 | 2.012550e-57 | -8.615850e-47 |
| Msa0447130 | Msa1451820 | 0.810922 | 9.059485e-51 | -8.615850e-47 |
| Msa0447130 | Msa1457840 | 0.810421 | 1.162242e-50 | -8.615850e-47 |
| Msa0279180 | Msa0447130 | 0.803159 | 3.981213e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0447130 | MtrunA17_Chr3g0088311 | 95.890 | 365 | 14 | 1 | 1 | 365 | 1 | 364 | 0.0 | 679 |
| Msa0447130 | MtrunA17_Chr7g0257991 | 34.191 | 272 | 135 | 8 | 1 | 246 | 1 | 254 | 2.93e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0447130 | AT3G52110.2 | 43.011 | 372 | 160 | 13 | 1 | 361 | 1 | 331 | 8.06e-70 | 222 |
| Msa0447130 | AT3G52110.1 | 40.000 | 400 | 160 | 13 | 1 | 361 | 1 | 359 | 5.16e-66 | 213 |
| Msa0447130 | AT3G52110.3 | 41.667 | 336 | 127 | 10 | 1 | 297 | 1 | 306 | 2.49e-59 | 195 |
| Msa0447130 | AT3G52110.4 | 43.103 | 290 | 125 | 8 | 1 | 280 | 1 | 260 | 8.60e-56 | 184 |
Find 88 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAACCAAAATCCGAATT+TGG | 0.214237 | 3_3:+24425387 | Msa0447130:CDS |
| GAGTAACCAAATTCGGATTT+TGG | 0.233277 | 3_3:-24425393 | None:intergenic |
| GATACAAGTACCTTCTAATT+TGG | 0.250372 | 3_3:-24425185 | None:intergenic |
| TGACTTGATCAAAGCCTTCT+TGG | 0.260330 | 3_3:-24425428 | None:intergenic |
| GATTCTCATTGAAATTAAAC+TGG | 0.271733 | 3_3:+24427117 | Msa0447130:exon |
| TTGGATGGGATGTGTGTTAA+AGG | 0.276726 | 3_3:+24425772 | Msa0447130:CDS |
| CATTGCAGAATTCTGTGATT+TGG | 0.280831 | 3_3:-24425564 | None:intergenic |
| TGAATCTGAATTTATCATCT+TGG | 0.294904 | 3_3:-24425354 | None:intergenic |
| CAAAAGCCTTGGACATGTTC+TGG | 0.319084 | 3_3:+24427063 | Msa0447130:CDS |
| CAGATCACCAAGTCCTTTCA+AGG | 0.337664 | 3_3:+24424705 | Msa0447130:CDS |
| AATTGAGGAGTAACCAAATT+CGG | 0.341390 | 3_3:-24425400 | None:intergenic |
| AAGGAAACCATTGCTTGAAA+TGG | 0.343999 | 3_3:+24425735 | Msa0447130:CDS |
| GAATCTGAATTTATCATCTT+GGG | 0.347711 | 3_3:-24425353 | None:intergenic |
| TCTTCTTCTTTACTCTCTAC+AGG | 0.348257 | 3_3:-24425643 | None:intergenic |
| TTCTCCAAGTCAAGAGTTAT+AGG | 0.377448 | 3_3:-24426416 | None:intergenic |
| CTGCAATGAATTGAAGAGAT+TGG | 0.379870 | 3_3:+24425579 | Msa0447130:CDS |
| GTTTCAGATTCTTATGTCAT+TGG | 0.386999 | 3_3:-24427265 | None:intergenic |
| AGCTTCATCGTCATTGTTGT+TGG | 0.394893 | 3_3:-24424255 | None:intergenic |
| CTTCTCTCCCGTGTGATCAA+TGG | 0.429430 | 3_3:+24424121 | Msa0447130:exon |
| AGGTTCCAGATCCCGGCTAA+TGG | 0.435543 | 3_3:+24426538 | Msa0447130:CDS |
| TCTGTGATTTGGTTCAGAAT+AGG | 0.435978 | 3_3:-24425553 | None:intergenic |
| ACGTACCATTAGCCGGGATC+TGG | 0.437002 | 3_3:-24426543 | None:intergenic |
| CTCTTGACTTGGAGAATGTA+AGG | 0.438576 | 3_3:+24426423 | Msa0447130:CDS |
| TGGATAGAAGAGAGAAAGAA+AGG | 0.449130 | 3_3:+24425716 | Msa0447130:CDS |
| GAAAGAGTTGATTGCAATGA+AGG | 0.450344 | 3_3:-24425505 | None:intergenic |
| AGGAAACCATTGCTTGAAAT+GGG | 0.454113 | 3_3:+24425736 | Msa0447130:CDS |
| AGACAAGAAGTCGACAAACT+TGG | 0.455479 | 3_3:-24424219 | None:intergenic |
| AGAGATTGGCATTAAGAGCT+AGG | 0.455601 | 3_3:+24425593 | Msa0447130:CDS |
| TTGAAAACCTTGAAAGGACT+TGG | 0.458556 | 3_3:-24424712 | None:intergenic |
| CTATTTATATATTGTACTCA+TGG | 0.462884 | 3_3:+24427190 | Msa0447130:three_prime_UTR |
| CGCGGGTTCCATTGATCACA+CGG | 0.469660 | 3_3:-24424129 | None:intergenic |
| CTTCTTCTTTACTCTCTACA+GGG | 0.471523 | 3_3:-24425642 | None:intergenic |
| CATGCCTATAACTCTTGACT+TGG | 0.473248 | 3_3:+24426412 | Msa0447130:CDS |
| GCCTTCTTGGACTTAAATTG+AGG | 0.474331 | 3_3:-24425415 | None:intergenic |
| GCCTTACCCATTTCAAGCAA+TGG | 0.476077 | 3_3:-24425742 | None:intergenic |
| GACCTCGCCGGTGAACGCTT+TGG | 0.485298 | 3_3:+24425687 | Msa0447130:CDS |
| CCTCAAAAGGTTCCAGATCC+CGG | 0.489613 | 3_3:+24426531 | Msa0447130:CDS |
| TCCTCAATTTAAGTCCAAGA+AGG | 0.490589 | 3_3:+24425414 | Msa0447130:CDS |
| TGGATGGGATGTGTGTTAAA+GGG | 0.490645 | 3_3:+24425773 | Msa0447130:CDS |
| GAGATGGGAAAATCAAAAGA+AGG | 0.491493 | 3_3:+24425305 | Msa0447130:intron |
| CAAGTGGTGACCAAATTAGA+AGG | 0.496358 | 3_3:+24425175 | Msa0447130:CDS |
| CTTCTAATTTGGTCACCACT+TGG | 0.502583 | 3_3:-24425174 | None:intergenic |
| GGTGAACGCTTTGGCAGAGT+TGG | 0.511955 | 3_3:+24425696 | Msa0447130:CDS |
| GGTTGGGACGTACCATTAGC+CGG | 0.514008 | 3_3:-24426550 | None:intergenic |
| AACTCTGCCAAAGCGTTCAC+CGG | 0.518508 | 3_3:-24425694 | None:intergenic |
| AATGGGTAAGGCTGAAAGGT+TGG | 0.518631 | 3_3:+24425753 | Msa0447130:CDS |
| TGGAACCCGCGAAAATCGAT+TGG | 0.518768 | 3_3:+24424141 | Msa0447130:CDS |
| CAAGAATTGAAAACCTTGAA+AGG | 0.521962 | 3_3:-24424718 | None:intergenic |
| GGTAAGGCTGAAAGGTTGGA+TGG | 0.525835 | 3_3:+24425757 | Msa0447130:CDS |
| TTGGGGAGAAGATGATGAAA+GGG | 0.527318 | 3_3:-24425335 | None:intergenic |
| AGGAAGAGAAACAAAAGCCT+TGG | 0.531913 | 3_3:+24427052 | Msa0447130:CDS |
| ACAACAATGACGATGAAGCT+TGG | 0.532137 | 3_3:+24424258 | Msa0447130:CDS |
| ACCATTGCTTGAAATGGGTA+AGG | 0.532730 | 3_3:+24425741 | Msa0447130:CDS |
| TGTAGAGAGTAAAGAAGAAG+AGG | 0.537526 | 3_3:+24425645 | Msa0447130:CDS |
| TGGAGAATGTAAGGCAAAAG+AGG | 0.545027 | 3_3:+24426432 | Msa0447130:CDS |
| GAGATTGGCATTAAGAGCTA+GGG | 0.549776 | 3_3:+24425594 | Msa0447130:CDS |
| GACAAGAAGTCGACAAACTT+GGG | 0.549866 | 3_3:-24424218 | None:intergenic |
| CTTGGGGAGAAGATGATGAA+AGG | 0.552832 | 3_3:-24425336 | None:intergenic |
| AATCTGAATTTATCATCTTG+GGG | 0.559370 | 3_3:-24425352 | None:intergenic |
| AAAAGTATTACAATCTCTGA+AGG | 0.570300 | 3_3:+24427032 | Msa0447130:CDS |
| CAGCTTGATAATGTTGTGCA+AGG | 0.574727 | 3_3:-24427095 | None:intergenic |
| GTTGGGACGTACCATTAGCC+GGG | 0.580375 | 3_3:-24426549 | None:intergenic |
| CGACAAACTTGGGTGCGTTG+AGG | 0.594070 | 3_3:-24424208 | None:intergenic |
| AGATGGGAAAATCAAAAGAA+GGG | 0.599458 | 3_3:+24425306 | Msa0447130:CDS |
| TGACACATTGCAAGACAGTA+CGG | 0.601863 | 3_3:+24425477 | Msa0447130:CDS |
| ATTCTCATTGAAATTAAACT+GGG | 0.610494 | 3_3:+24427118 | Msa0447130:exon |
| GCAAAACAAGGAAGTTGCAA+AGG | 0.614584 | 3_3:+24426989 | Msa0447130:CDS |
| TTGAAATGGGTAAGGCTGAA+AGG | 0.620447 | 3_3:+24425749 | Msa0447130:CDS |
| GTAAGGCTGAAAGGTTGGAT+GGG | 0.622635 | 3_3:+24425758 | Msa0447130:CDS |
| AGGCTTATCATGCAGGAGAG+AGG | 0.623771 | 3_3:+24426948 | Msa0447130:intron |
| TGCCAAAGCGTTCACCGGCG+AGG | 0.627171 | 3_3:-24425689 | None:intergenic |
| TTATCAGAAAATCTTCCAAG+TGG | 0.629968 | 3_3:+24425159 | Msa0447130:CDS |
| TTACATCACGTAACTCATAA+CGG | 0.631304 | 3_3:+24423997 | Msa0447130:five_prime_UTR |
| GGAGAATGTAAGGCAAAAGA+GGG | 0.637079 | 3_3:+24426433 | Msa0447130:CDS |
| TTATGAGTTACGTGATGTAA+CGG | 0.638825 | 3_3:-24423994 | None:intergenic |
| CACACGGGAGAGAAGAGAGA+GGG | 0.641718 | 3_3:-24424113 | None:intergenic |
| TGGGGAGAAGATGATGAAAG+GGG | 0.644916 | 3_3:-24425334 | None:intergenic |
| TAAAGAAGTTGAGCAAAACA+AGG | 0.647922 | 3_3:+24426977 | Msa0447130:CDS |
| GAAGAACCAGAACATGTCCA+AGG | 0.652026 | 3_3:-24427069 | None:intergenic |
| GCGGGTTCCATTGATCACAC+GGG | 0.655579 | 3_3:-24424128 | None:intergenic |
| GAGTTACGTGATGTAACGGA+GGG | 0.661477 | 3_3:-24423990 | None:intergenic |
| TTGTGTAGTGAAGACTGTGA+AGG | 0.670213 | 3_3:-24424036 | None:intergenic |
| TGAGTTACGTGATGTAACGG+AGG | 0.681674 | 3_3:-24423991 | None:intergenic |
| TCACACGGGAGAGAAGAGAG+AGG | 0.689592 | 3_3:-24424114 | None:intergenic |
| GGAGAAGATGATGAAAGGGG+TGG | 0.706516 | 3_3:-24425331 | None:intergenic |
| TGTGCACGAGAAGACCTCGC+CGG | 0.712375 | 3_3:+24425675 | Msa0447130:CDS |
| ATTGTGCAGAAGACCTGATG+AGG | 0.747642 | 3_3:+24426382 | Msa0447130:intron |
| CACATTGCAAGACAGTACGG+AGG | 0.751329 | 3_3:+24425480 | Msa0447130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTATTAATTTTTGTTTT+TGG | + | chr3_3:24425101-24425120 | Msa0447130:intron | 10.0% |
| !!! | AATTTTGAATTTTTCTCAAT+TGG | + | chr3_3:24424320-24424339 | Msa0447130:intron | 15.0% |
| !!! | ATTTTGAATTTTTCTCAATT+GGG | + | chr3_3:24424321-24424340 | Msa0447130:intron | 15.0% |
| !!! | AAGTTTTGATTTTTCTTAAT+TGG | + | chr3_3:24424576-24424595 | Msa0447130:intron | 15.0% |
| !!! | AGTTTTGATTTTTCTTAATT+GGG | + | chr3_3:24424577-24424596 | Msa0447130:intron | 15.0% |
| !!! | ATAGTTTGGATTTTAATTAA+TGG | + | chr3_3:24424606-24424625 | Msa0447130:intron | 15.0% |
| !!! | TAGTTTGGATTTTAATTAAT+GGG | + | chr3_3:24424607-24424626 | Msa0447130:intron | 15.0% |
| !!! | AGATTTTCTGATAAATAAAA+TGG | - | chr3_3:24425153-24425172 | None:intergenic | 15.0% |
| !! | TATGAATAGTTTAATGTTAT+AGG | - | chr3_3:24426574-24426593 | None:intergenic | 15.0% |
| !! | CATTAAACTATTCATATTTA+TGG | + | chr3_3:24426578-24426597 | Msa0447130:intron | 15.0% |
| !!! | ACAATTTATTGACAAATTTT+AGG | - | chr3_3:24427319-24427338 | None:intergenic | 15.0% |
| !!! | AAGTTTGGATTTTTAGTAAT+TGG | + | chr3_3:24424403-24424422 | Msa0447130:intron | 20.0% |
| !!! | AGTTTGGATTTTTAGTAATT+GGG | + | chr3_3:24424404-24424423 | Msa0447130:intron | 20.0% |
| !!! | AAAGTTTGGATTTTTATTAG+TGG | + | chr3_3:24424485-24424504 | Msa0447130:intron | 20.0% |
| !!! | AAGTTTGGATTTTTATTAGT+GGG | + | chr3_3:24424486-24424505 | Msa0447130:intron | 20.0% |
| !!! | ATTTTTCACTTTTCACAATT+GGG | + | chr3_3:24424546-24424565 | Msa0447130:intron | 20.0% |
| !!! | ATAGTTTGAGCTTTTAATTA+TGG | + | chr3_3:24424763-24424782 | Msa0447130:intron | 20.0% |
| !! | AGTAACATAGGAAAAAAATT+GGG | - | chr3_3:24424846-24424865 | None:intergenic | 20.0% |
| !! | AAGTAACATAGGAAAAAAAT+TGG | - | chr3_3:24424847-24424866 | None:intergenic | 20.0% |
| !! | TTTAATATTGCTATAGAGAT+GGG | + | chr3_3:24425290-24425309 | Msa0447130:intron | 20.0% |
| !! | AGTGAAACATTACAAATATT+TGG | + | chr3_3:24426210-24426229 | Msa0447130:intron | 20.0% |
| !! | GCATAACTTATACAAATTAT+TGG | + | chr3_3:24426238-24426257 | Msa0447130:intron | 20.0% |
| !!! | TTATCTTTTTATAACTTCAG+TGG | + | chr3_3:24426266-24426285 | Msa0447130:intron | 20.0% |
| !! | TATACAAAAATGATTAACCA+AGG | - | chr3_3:24426354-24426373 | None:intergenic | 20.0% |
| !! | ATAGTTTAATGTTATAGGTT+GGG | - | chr3_3:24426569-24426588 | None:intergenic | 20.0% |
| !! | AATAGTTTAATGTTATAGGT+TGG | - | chr3_3:24426570-24426589 | None:intergenic | 20.0% |
| !! | AATATATTGCTCTCTTAATA+TGG | - | chr3_3:24426729-24426748 | None:intergenic | 20.0% |
| !! | TAAATAGTTTCAGATTAATC+TGG | - | chr3_3:24426803-24426822 | None:intergenic | 20.0% |
| !! | AAACTATTTAATGTGTCAAT+TGG | + | chr3_3:24426813-24426832 | Msa0447130:intron | 20.0% |
| !! | ATTCTCATTGAAATTAAACT+GGG | + | chr3_3:24427118-24427137 | Msa0447130:exon | 20.0% |
| !! | CTATTTATATATTGTACTCA+TGG | + | chr3_3:24427190-24427209 | Msa0447130:three_prime_UTR | 20.0% |
| !! | TAGATTGCATTTTTCTCAAT+TGG | + | chr3_3:24424372-24424391 | Msa0447130:intron | 25.0% |
| !! | AGATTGCATTTTTCTCAATT+GGG | + | chr3_3:24424373-24424392 | Msa0447130:intron | 25.0% |
| !!! | CATTTTTCACTTTTCACAAT+TGG | + | chr3_3:24424545-24424564 | Msa0447130:intron | 25.0% |
| !!! | TAATTGGGTTTGTTATAGTT+TGG | + | chr3_3:24424592-24424611 | Msa0447130:intron | 25.0% |
| ! | GTAACATAGGAAAAAAATTG+GGG | - | chr3_3:24424845-24424864 | None:intergenic | 25.0% |
| !!! | TAGTTTTGAGCTTCTATTTA+TGG | + | chr3_3:24424883-24424902 | Msa0447130:intron | 25.0% |
| ! | TTCTAAACATCATCATGAAA+AGG | - | chr3_3:24424943-24424962 | None:intergenic | 25.0% |
| ! | TAGAAAGCAACATAGAAAAA+AGG | - | chr3_3:24425012-24425031 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTTCCTTTTTTGA+AGG | + | chr3_3:24425119-24425138 | Msa0447130:intron | 25.0% |
| ! | GTTTAATATTGCTATAGAGA+TGG | + | chr3_3:24425289-24425308 | Msa0447130:intron | 25.0% |
| ! | AATCTGAATTTATCATCTTG+GGG | - | chr3_3:24425355-24425374 | None:intergenic | 25.0% |
| ! | GAATCTGAATTTATCATCTT+GGG | - | chr3_3:24425356-24425375 | None:intergenic | 25.0% |
| ! | TGAATCTGAATTTATCATCT+TGG | - | chr3_3:24425357-24425376 | None:intergenic | 25.0% |
| ! | ATAAAGAAACACAGATTACA+AGG | - | chr3_3:24425830-24425849 | None:intergenic | 25.0% |
| ! | TTCAAATTTCACATCTAACT+TGG | - | chr3_3:24426190-24426209 | None:intergenic | 25.0% |
| ! | TGTAGATACAACTAAATCAA+AGG | - | chr3_3:24426298-24426317 | None:intergenic | 25.0% |
| !! | ATGGATTATTTACAAGACAA+TGG | + | chr3_3:24426597-24426616 | Msa0447130:intron | 25.0% |
| ! | ATCTATCAATGAATCTCTTT+AGG | - | chr3_3:24426676-24426695 | None:intergenic | 25.0% |
| !!! | AAAAGTATTACAATCTCTGA+AGG | + | chr3_3:24427032-24427051 | Msa0447130:CDS | 25.0% |
| ! | GATTCTCATTGAAATTAAAC+TGG | + | chr3_3:24427117-24427136 | Msa0447130:exon | 25.0% |
| TTATGAGTTACGTGATGTAA+CGG | - | chr3_3:24423997-24424016 | None:intergenic | 30.0% | |
| TTACATCACGTAACTCATAA+CGG | + | chr3_3:24423997-24424016 | Msa0447130:five_prime_UTR | 30.0% | |
| !! | ATTTTTCCAATCGATTTTCG+CGG | - | chr3_3:24424150-24424169 | None:intergenic | 30.0% |
| TCGATTGGAAAAATCTAGAA+TGG | + | chr3_3:24424156-24424175 | Msa0447130:CDS | 30.0% | |
| !! | CAATTGGGTTTGTTAAAGTT+TGG | + | chr3_3:24424388-24424407 | Msa0447130:intron | 30.0% |
| !!! | TAGATTGCTTTTTTCTCAAC+TGG | + | chr3_3:24424455-24424474 | Msa0447130:intron | 30.0% |
| !!! | AGATTGCTTTTTTCTCAACT+GGG | + | chr3_3:24424456-24424475 | Msa0447130:intron | 30.0% |
| CAAGAATTGAAAACCTTGAA+AGG | - | chr3_3:24424721-24424740 | None:intergenic | 30.0% | |
| ACAGACAGAAAAAGTAACAT+AGG | - | chr3_3:24424858-24424877 | None:intergenic | 30.0% | |
| TTGTTCTCAGTTTCTAACTT+TGG | + | chr3_3:24425044-24425063 | Msa0447130:intron | 30.0% | |
| TTATCAGAAAATCTTCCAAG+TGG | + | chr3_3:24425159-24425178 | Msa0447130:CDS | 30.0% | |
| GATACAAGTACCTTCTAATT+TGG | - | chr3_3:24425188-24425207 | None:intergenic | 30.0% | |
| TCTCAAATTCCTATGGAAAA+AGG | - | chr3_3:24425231-24425250 | None:intergenic | 30.0% | |
| AGCAAAATCTCAAATTCCTA+TGG | - | chr3_3:24425238-24425257 | None:intergenic | 30.0% | |
| AGATGGGAAAATCAAAAGAA+GGG | + | chr3_3:24425306-24425325 | Msa0447130:CDS | 30.0% | |
| TGAAAACCAAAATCCGAATT+TGG | + | chr3_3:24425387-24425406 | Msa0447130:CDS | 30.0% | |
| AATTGAGGAGTAACCAAATT+CGG | - | chr3_3:24425403-24425422 | None:intergenic | 30.0% | |
| CAAGGAAATAGTACAAGAAT+TGG | - | chr3_3:24426336-24426355 | None:intergenic | 30.0% | |
| CAATTCTTGTACTATTTCCT+TGG | + | chr3_3:24426334-24426353 | Msa0447130:intron | 30.0% | |
| GATTTCATGAACTGACATTA+AGG | + | chr3_3:24426693-24426712 | Msa0447130:intron | 30.0% | |
| TTTAATGTGTCAATTGGAAG+AGG | + | chr3_3:24426819-24426838 | Msa0447130:intron | 30.0% | |
| ! | CATTACTACTTCTCTAAAGA+GGG | - | chr3_3:24426905-24426924 | None:intergenic | 30.0% |
| ! | ACATTACTACTTCTCTAAAG+AGG | - | chr3_3:24426906-24426925 | None:intergenic | 30.0% |
| ! | TAAAAAGAGATCTGATGATG+AGG | + | chr3_3:24426928-24426947 | Msa0447130:intron | 30.0% |
| TAAAGAAGTTGAGCAAAACA+AGG | + | chr3_3:24426977-24426996 | Msa0447130:CDS | 30.0% | |
| !!! | ATACTTTTGTTGTTTAGTGC+TGG | - | chr3_3:24427020-24427039 | None:intergenic | 30.0% |
| !!! | GGAGCAAAACTGTTTTATTT+AGG | + | chr3_3:24427211-24427230 | Msa0447130:three_prime_UTR | 30.0% |
| GTTTCAGATTCTTATGTCAT+TGG | - | chr3_3:24427268-24427287 | None:intergenic | 30.0% | |
| !!! | ACAAATTTTAGGTTCAGTAC+AGG | - | chr3_3:24427308-24427327 | None:intergenic | 30.0% |
| !! | TTTTTCCAATCGATTTTCGC+GGG | - | chr3_3:24424149-24424168 | None:intergenic | 35.0% |
| !! | CAACTGGGTTTGTTAAAGTT+TGG | + | chr3_3:24424471-24424490 | Msa0447130:intron | 35.0% |
| !!! | GAAAATCCTCTGCTGTTTTT+GGG | - | chr3_3:24424684-24424703 | None:intergenic | 35.0% |
| !!! | AGAAAATCCTCTGCTGTTTT+TGG | - | chr3_3:24424685-24424704 | None:intergenic | 35.0% |
| TTGAAAACCTTGAAAGGACT+TGG | - | chr3_3:24424715-24424734 | None:intergenic | 35.0% | |
| !!! | TGCTAGTTTTCAACTTTAGC+TGG | + | chr3_3:24424795-24424814 | Msa0447130:intron | 35.0% |
| !! | CTATGTTGCTTTCTATGCTT+AGG | + | chr3_3:24425017-24425036 | Msa0447130:intron | 35.0% |
| ! | ACACACTTTCCTTTTTCCAT+AGG | + | chr3_3:24425219-24425238 | Msa0447130:intron | 35.0% |
| GAGATGGGAAAATCAAAAGA+AGG | + | chr3_3:24425305-24425324 | Msa0447130:intron | 35.0% | |
| ! | GAGTAACCAAATTCGGATTT+TGG | - | chr3_3:24425396-24425415 | None:intergenic | 35.0% |
| TCCTCAATTTAAGTCCAAGA+AGG | + | chr3_3:24425414-24425433 | Msa0447130:CDS | 35.0% | |
| ! | GAAAGAGTTGATTGCAATGA+AGG | - | chr3_3:24425508-24425527 | None:intergenic | 35.0% |
| !! | CGAAGAATTTGTTTTCGAGA+CGG | + | chr3_3:24425530-24425549 | Msa0447130:CDS | 35.0% |
| !! | TCTGTGATTTGGTTCAGAAT+AGG | - | chr3_3:24425556-24425575 | None:intergenic | 35.0% |
| CATTGCAGAATTCTGTGATT+TGG | - | chr3_3:24425567-24425586 | None:intergenic | 35.0% | |
| CTGCAATGAATTGAAGAGAT+TGG | + | chr3_3:24425579-24425598 | Msa0447130:CDS | 35.0% | |
| CTTCTTCTTTACTCTCTACA+GGG | - | chr3_3:24425645-24425664 | None:intergenic | 35.0% | |
| TCTTCTTCTTTACTCTCTAC+AGG | - | chr3_3:24425646-24425665 | None:intergenic | 35.0% | |
| TGTAGAGAGTAAAGAAGAAG+AGG | + | chr3_3:24425645-24425664 | Msa0447130:CDS | 35.0% | |
| TGGATAGAAGAGAGAAAGAA+AGG | + | chr3_3:24425716-24425735 | Msa0447130:CDS | 35.0% | |
| AAGGAAACCATTGCTTGAAA+TGG | + | chr3_3:24425735-24425754 | Msa0447130:CDS | 35.0% | |
| AGGAAACCATTGCTTGAAAT+GGG | + | chr3_3:24425736-24425755 | Msa0447130:CDS | 35.0% | |
| TTTACGATCCAAATCGATGT+AGG | + | chr3_3:24425928-24425947 | Msa0447130:intron | 35.0% | |
| ! | ACATAAGTCCTACATCGATT+TGG | - | chr3_3:24425939-24425958 | None:intergenic | 35.0% |
| AAGTGATTGAATGTAACCAC+CGG | - | chr3_3:24426066-24426085 | None:intergenic | 35.0% | |
| ! | GTTTTATAGGTTGCTAAGGT+AGG | + | chr3_3:24426154-24426173 | Msa0447130:intron | 35.0% |
| ! | AGTACAAGAATTGGAGTACT+GGG | - | chr3_3:24426327-24426346 | None:intergenic | 35.0% |
| TAGTACAAGAATTGGAGTAC+TGG | - | chr3_3:24426328-24426347 | None:intergenic | 35.0% | |
| TTCTCCAAGTCAAGAGTTAT+AGG | - | chr3_3:24426419-24426438 | None:intergenic | 35.0% | |
| CCTGATCGTGACTTAAAATT+CGG | - | chr3_3:24426756-24426775 | None:intergenic | 35.0% | |
| ACCACGTTTAATCTTGAATG+AGG | + | chr3_3:24426848-24426867 | Msa0447130:intron | 35.0% | |
| TCCTCATTCAAGATTAAACG+TGG | - | chr3_3:24426852-24426871 | None:intergenic | 35.0% | |
| TTGTGTAGTGAAGACTGTGA+AGG | - | chr3_3:24424039-24424058 | None:intergenic | 40.0% | |
| GACAAGAAGTCGACAAACTT+GGG | - | chr3_3:24424221-24424240 | None:intergenic | 40.0% | |
| AGACAAGAAGTCGACAAACT+TGG | - | chr3_3:24424222-24424241 | None:intergenic | 40.0% | |
| AGCTTCATCGTCATTGTTGT+TGG | - | chr3_3:24424258-24424277 | None:intergenic | 40.0% | |
| ACAACAATGACGATGAAGCT+TGG | + | chr3_3:24424258-24424277 | Msa0447130:CDS | 40.0% | |
| ! | ACCTGGTCAGTTTTCTCAAT+TGG | + | chr3_3:24424289-24424308 | Msa0447130:intron | 40.0% |
| ! | CCTGGTCAGTTTTCTCAATT+GGG | + | chr3_3:24424290-24424309 | Msa0447130:intron | 40.0% |
| GGACTTCTTGCCTTCAAAAA+AGG | - | chr3_3:24425132-24425151 | None:intergenic | 40.0% | |
| CTTCTAATTTGGTCACCACT+TGG | - | chr3_3:24425177-24425196 | None:intergenic | 40.0% | |
| CAAGTGGTGACCAAATTAGA+AGG | + | chr3_3:24425175-24425194 | Msa0447130:CDS | 40.0% | |
| TTGGGGAGAAGATGATGAAA+GGG | - | chr3_3:24425338-24425357 | None:intergenic | 40.0% | |
| GCCTTCTTGGACTTAAATTG+AGG | - | chr3_3:24425418-24425437 | None:intergenic | 40.0% | |
| TGACTTGATCAAAGCCTTCT+TGG | - | chr3_3:24425431-24425450 | None:intergenic | 40.0% | |
| TGACACATTGCAAGACAGTA+CGG | + | chr3_3:24425477-24425496 | Msa0447130:CDS | 40.0% | |
| AGAGATTGGCATTAAGAGCT+AGG | + | chr3_3:24425593-24425612 | Msa0447130:CDS | 40.0% | |
| GAGATTGGCATTAAGAGCTA+GGG | + | chr3_3:24425594-24425613 | Msa0447130:CDS | 40.0% | |
| ACCATTGCTTGAAATGGGTA+AGG | + | chr3_3:24425741-24425760 | Msa0447130:CDS | 40.0% | |
| TTGAAATGGGTAAGGCTGAA+AGG | + | chr3_3:24425749-24425768 | Msa0447130:CDS | 40.0% | |
| TTGGATGGGATGTGTGTTAA+AGG | + | chr3_3:24425772-24425791 | Msa0447130:CDS | 40.0% | |
| TGGATGGGATGTGTGTTAAA+GGG | + | chr3_3:24425773-24425792 | Msa0447130:CDS | 40.0% | |
| CATTGCTATCCATGTAACAC+CGG | + | chr3_3:24425977-24425996 | Msa0447130:intron | 40.0% | |
| ATAAAACACCGACACTGGTA+TGG | - | chr3_3:24426141-24426160 | None:intergenic | 40.0% | |
| !!! | TACCAGTGTCGGTGTTTTAT+AGG | + | chr3_3:24426141-24426160 | Msa0447130:intron | 40.0% |
| AACCTATAAAACACCGACAC+TGG | - | chr3_3:24426146-24426165 | None:intergenic | 40.0% | |
| ! | CGGTGTTTTATAGGTTGCTA+AGG | + | chr3_3:24426150-24426169 | Msa0447130:intron | 40.0% |
| CATGCCTATAACTCTTGACT+TGG | + | chr3_3:24426412-24426431 | Msa0447130:CDS | 40.0% | |
| !! | CTCTTGACTTGGAGAATGTA+AGG | + | chr3_3:24426423-24426442 | Msa0447130:CDS | 40.0% |
| TGGAGAATGTAAGGCAAAAG+AGG | + | chr3_3:24426432-24426451 | Msa0447130:CDS | 40.0% | |
| GGAGAATGTAAGGCAAAAGA+GGG | + | chr3_3:24426433-24426452 | Msa0447130:CDS | 40.0% | |
| !! | CCGAATTTTAAGTCACGATC+AGG | + | chr3_3:24426753-24426772 | Msa0447130:intron | 40.0% |
| GCAAAACAAGGAAGTTGCAA+AGG | + | chr3_3:24426989-24427008 | Msa0447130:CDS | 40.0% | |
| AGGAAGAGAAACAAAAGCCT+TGG | + | chr3_3:24427052-24427071 | Msa0447130:CDS | 40.0% | |
| !! | CAGCTTGATAATGTTGTGCA+AGG | - | chr3_3:24427098-24427117 | None:intergenic | 40.0% |
| ! | GAGTTACGTGATGTAACGGA+GGG | - | chr3_3:24423993-24424012 | None:intergenic | 45.0% |
| TGAGTTACGTGATGTAACGG+AGG | - | chr3_3:24423994-24424013 | None:intergenic | 45.0% | |
| !!! | GAAGCTTGGTTTTGCAAACC+TGG | + | chr3_3:24424272-24424291 | Msa0447130:CDS | 45.0% |
| CCCAATTGAGAAAACTGACC+AGG | - | chr3_3:24424293-24424312 | None:intergenic | 45.0% | |
| CAATCACCCAAAAACAGCAG+AGG | + | chr3_3:24424675-24424694 | Msa0447130:CDS | 45.0% | |
| CAGATCACCAAGTCCTTTCA+AGG | + | chr3_3:24424705-24424724 | Msa0447130:CDS | 45.0% | |
| TGGGGAGAAGATGATGAAAG+GGG | - | chr3_3:24425337-24425356 | None:intergenic | 45.0% | |
| CTTGGGGAGAAGATGATGAA+AGG | - | chr3_3:24425339-24425358 | None:intergenic | 45.0% | |
| GCCTTACCCATTTCAAGCAA+TGG | - | chr3_3:24425745-24425764 | None:intergenic | 45.0% | |
| AATGGGTAAGGCTGAAAGGT+TGG | + | chr3_3:24425753-24425772 | Msa0447130:CDS | 45.0% | |
| GTAAGGCTGAAAGGTTGGAT+GGG | + | chr3_3:24425758-24425777 | Msa0447130:CDS | 45.0% | |
| !! | ACTAAAGTGCCGGTGTTACA+TGG | - | chr3_3:24425989-24426008 | None:intergenic | 45.0% |
| !! | ACACCGGCACTTTAGTTTGA+AGG | + | chr3_3:24425993-24426012 | Msa0447130:intron | 45.0% |
| ACGCCTTCAAACTAAAGTGC+CGG | - | chr3_3:24425999-24426018 | None:intergenic | 45.0% | |
| ! | TTGAAGGCGTGTCTTAAGTC+TGG | + | chr3_3:24426009-24426028 | Msa0447130:intron | 45.0% |
| TGTCTAACACCGACATATGC+CGG | + | chr3_3:24426044-24426063 | Msa0447130:intron | 45.0% | |
| ATGTAACCACCGGCATATGT+CGG | - | chr3_3:24426056-24426075 | None:intergenic | 45.0% | |
| TCCAATGTCCATACCAGTGT+CGG | + | chr3_3:24426130-24426149 | Msa0447130:intron | 45.0% | |
| GTTGCTAAGGTAGGCAATCT+AGG | + | chr3_3:24426163-24426182 | Msa0447130:intron | 45.0% | |
| ATTGTGCAGAAGACCTGATG+AGG | + | chr3_3:24426382-24426401 | Msa0447130:intron | 45.0% | |
| GAAAAACACTGAGGAGAAGG+AGG | - | chr3_3:24426488-24426507 | None:intergenic | 45.0% | |
| GCAGAAAAACACTGAGGAGA+AGG | - | chr3_3:24426491-24426510 | None:intergenic | 45.0% | |
| ! | TCTCCTCAGTGTTTTTCTGC+TGG | + | chr3_3:24426491-24426510 | Msa0447130:CDS | 45.0% |
| ! | CTCCTCAGTGTTTTTCTGCT+GGG | + | chr3_3:24426492-24426511 | Msa0447130:CDS | 45.0% |
| AATAACCCTACCCCCTCAAA+AGG | + | chr3_3:24426518-24426537 | Msa0447130:CDS | 45.0% | |
| GATGATGAGGCTTATCATGC+AGG | + | chr3_3:24426941-24426960 | Msa0447130:intron | 45.0% | |
| CAAAAGCCTTGGACATGTTC+TGG | + | chr3_3:24427063-24427082 | Msa0447130:CDS | 45.0% | |
| GAAGAACCAGAACATGTCCA+AGG | - | chr3_3:24427072-24427091 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr3_3:24424064-24424083 | None:intergenic | 50.0% | |
| CTTCTCTCCCGTGTGATCAA+TGG | + | chr3_3:24424121-24424140 | Msa0447130:exon | 50.0% | |
| TGGAACCCGCGAAAATCGAT+TGG | + | chr3_3:24424141-24424160 | Msa0447130:CDS | 50.0% | |
| GGAGAAGATGATGAAAGGGG+TGG | - | chr3_3:24425334-24425353 | None:intergenic | 50.0% | |
| CACATTGCAAGACAGTACGG+AGG | + | chr3_3:24425480-24425499 | Msa0447130:CDS | 50.0% | |
| ! | AACTCTGCCAAAGCGTTCAC+CGG | - | chr3_3:24425697-24425716 | None:intergenic | 50.0% |
| GGTAAGGCTGAAAGGTTGGA+TGG | + | chr3_3:24425757-24425776 | Msa0447130:CDS | 50.0% | |
| ACCGACACTGGTATGGACAT+TGG | - | chr3_3:24426134-24426153 | None:intergenic | 50.0% | |
| ! | GGCATGTTTTCTGCCTCATC+AGG | - | chr3_3:24426398-24426417 | None:intergenic | 50.0% |
| AGCCCAGCAGAAAAACACTG+AGG | - | chr3_3:24426497-24426516 | None:intergenic | 50.0% | |
| !! | TGGAACCTTTTGAGGGGGTA+GGG | - | chr3_3:24426526-24426545 | None:intergenic | 50.0% |
| !! | GGATCTGGAACCTTTTGAGG+GGG | - | chr3_3:24426531-24426550 | None:intergenic | 50.0% |
| !! | GGGATCTGGAACCTTTTGAG+GGG | - | chr3_3:24426532-24426551 | None:intergenic | 50.0% |
| !! | CGGGATCTGGAACCTTTTGA+GGG | - | chr3_3:24426533-24426552 | None:intergenic | 50.0% |
| CCTCAAAAGGTTCCAGATCC+CGG | + | chr3_3:24426531-24426550 | Msa0447130:CDS | 50.0% | |
| AGGCTTATCATGCAGGAGAG+AGG | + | chr3_3:24426948-24426967 | Msa0447130:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGG+TGG | - | chr3_3:24424063-24424082 | None:intergenic | 55.0% | |
| CACACGGGAGAGAAGAGAGA+GGG | - | chr3_3:24424116-24424135 | None:intergenic | 55.0% | |
| TCACACGGGAGAGAAGAGAG+AGG | - | chr3_3:24424117-24424136 | None:intergenic | 55.0% | |
| GCGGGTTCCATTGATCACAC+GGG | - | chr3_3:24424131-24424150 | None:intergenic | 55.0% | |
| CGCGGGTTCCATTGATCACA+CGG | - | chr3_3:24424132-24424151 | None:intergenic | 55.0% | |
| CGACAAACTTGGGTGCGTTG+AGG | - | chr3_3:24424211-24424230 | None:intergenic | 55.0% | |
| GGTGAACGCTTTGGCAGAGT+TGG | + | chr3_3:24425696-24425715 | Msa0447130:CDS | 55.0% | |
| CTAACACCGACATATGCCGG+TGG | + | chr3_3:24426047-24426066 | Msa0447130:intron | 55.0% | |
| !! | CTGGAACCTTTTGAGGGGGT+AGG | - | chr3_3:24426527-24426546 | None:intergenic | 55.0% |
| !! | CCGGGATCTGGAACCTTTTG+AGG | - | chr3_3:24426534-24426553 | None:intergenic | 55.0% |
| AGGTTCCAGATCCCGGCTAA+TGG | + | chr3_3:24426538-24426557 | Msa0447130:CDS | 55.0% | |
| ACGTACCATTAGCCGGGATC+TGG | - | chr3_3:24426546-24426565 | None:intergenic | 55.0% | |
| GTTGGGACGTACCATTAGCC+GGG | - | chr3_3:24426552-24426571 | None:intergenic | 55.0% | |
| GGTTGGGACGTACCATTAGC+CGG | - | chr3_3:24426553-24426572 | None:intergenic | 55.0% | |
| TGTGCACGAGAAGACCTCGC+CGG | + | chr3_3:24425675-24425694 | Msa0447130:CDS | 60.0% | |
| GACCTCGCCGGTGAACGCTT+TGG | + | chr3_3:24425687-24425706 | Msa0447130:CDS | 65.0% | |
| ! | TGCCAAAGCGTTCACCGGCG+AGG | - | chr3_3:24425692-24425711 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 24423981 | 24427354 | 24423981 | ID=Msa0447130;Name=Msa0447130 |
| chr3_3 | mRNA | 24423981 | 24427354 | 24423981 | ID=Msa0447130-mRNA-1;Parent=Msa0447130;Name=Msa0447130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=159|1|1|1|1|1|6|236|365 |
| chr3_3 | exon | 24423981 | 24424293 | 24423981 | ID=Msa0447130-mRNA-1:exon:4842;Parent=Msa0447130-mRNA-1 |
| chr3_3 | exon | 24424671 | 24424726 | 24424671 | ID=Msa0447130-mRNA-1:exon:4843;Parent=Msa0447130-mRNA-1 |
| chr3_3 | exon | 24425141 | 24425196 | 24425141 | ID=Msa0447130-mRNA-1:exon:4844;Parent=Msa0447130-mRNA-1 |
| chr3_3 | exon | 24425306 | 24425812 | 24425306 | ID=Msa0447130-mRNA-1:exon:4845;Parent=Msa0447130-mRNA-1 |
| chr3_3 | exon | 24426391 | 24426559 | 24426391 | ID=Msa0447130-mRNA-1:exon:4846;Parent=Msa0447130-mRNA-1 |
| chr3_3 | exon | 24426963 | 24427354 | 24426963 | ID=Msa0447130-mRNA-1:exon:4847;Parent=Msa0447130-mRNA-1 |
| chr3_3 | five_prime_UTR | 24423981 | 24424139 | 24423981 | ID=Msa0447130-mRNA-1:five_prime_utr;Parent=Msa0447130-mRNA-1 |
| chr3_3 | CDS | 24424140 | 24424293 | 24424140 | ID=Msa0447130-mRNA-1:cds;Parent=Msa0447130-mRNA-1 |
| chr3_3 | CDS | 24424671 | 24424726 | 24424671 | ID=Msa0447130-mRNA-1:cds;Parent=Msa0447130-mRNA-1 |
| chr3_3 | CDS | 24425141 | 24425196 | 24425141 | ID=Msa0447130-mRNA-1:cds;Parent=Msa0447130-mRNA-1 |
| chr3_3 | CDS | 24425306 | 24425812 | 24425306 | ID=Msa0447130-mRNA-1:cds;Parent=Msa0447130-mRNA-1 |
| chr3_3 | CDS | 24426391 | 24426559 | 24426391 | ID=Msa0447130-mRNA-1:cds;Parent=Msa0447130-mRNA-1 |
| chr3_3 | CDS | 24426963 | 24427118 | 24426963 | ID=Msa0447130-mRNA-1:cds;Parent=Msa0447130-mRNA-1 |
| chr3_3 | three_prime_UTR | 24427119 | 24427354 | 24427119 | ID=Msa0447130-mRNA-1:three_prime_utr;Parent=Msa0447130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
