Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389830 | XP_003592178.1 | 88.253 | 332 | 19 | 4 | 1 | 331 | 1 | 313 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389830 | sp|Q9FLX4|MAKR5_ARATH | 31.661 | 319 | 151 | 10 | 1 | 305 | 1 | 266 | 4.64e-31 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389830 | G7IDX6 | 88.253 | 332 | 19 | 4 | 1 | 331 | 1 | 313 | 0.0 | 574 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012040 | Msa1389830 | 0.831907 | 1.279249e-55 | -8.615850e-47 |
| Msa0017510 | Msa1389830 | 0.827045 | 1.942966e-54 | -8.615850e-47 |
| Msa0028640 | Msa1389830 | 0.805972 | 1.031051e-49 | -8.615850e-47 |
| Msa0037700 | Msa1389830 | 0.901511 | 2.489880e-78 | -8.615850e-47 |
| Msa0057520 | Msa1389830 | 0.810183 | 1.307997e-50 | -8.615850e-47 |
| Msa0086650 | Msa1389830 | 0.869103 | 3.977084e-66 | -8.615850e-47 |
| Msa0101700 | Msa1389830 | 0.813414 | 2.591264e-51 | -8.615850e-47 |
| Msa0113750 | Msa1389830 | 0.814907 | 1.212854e-51 | -8.615850e-47 |
| Msa0119960 | Msa1389830 | 0.801598 | 8.348736e-49 | -8.615850e-47 |
| Msa1359040 | Msa1389830 | 0.800908 | 1.155926e-48 | -8.615850e-47 |
| Msa1382160 | Msa1389830 | 0.812450 | 4.214857e-51 | -8.615850e-47 |
| Msa1389830 | Msa1392260 | 0.801726 | 7.859602e-49 | -8.615850e-47 |
| Msa1389830 | Msa1393040 | 0.802863 | 4.583561e-49 | -8.615850e-47 |
| Msa1389830 | Msa1397120 | 0.804200 | 2.421476e-49 | -8.615850e-47 |
| Msa1389830 | Msa1403890 | 0.812837 | 3.466804e-51 | -8.615850e-47 |
| Msa1389830 | Msa1424450 | 0.818192 | 2.228486e-52 | -8.615850e-47 |
| Msa1389830 | Msa1424750 | 0.808319 | 3.283695e-50 | -8.615850e-47 |
| Msa1389830 | Msa1425010 | 0.801031 | 1.090490e-48 | -8.615850e-47 |
| Msa1389830 | Msa1433390 | 0.804172 | 2.453792e-49 | -8.615850e-47 |
| Msa1389830 | Msa1452240 | 0.803573 | 3.267969e-49 | -8.615850e-47 |
| Msa1389830 | Msa1459950 | 0.808698 | 2.725962e-50 | -8.615850e-47 |
| Msa1389830 | Msa1460830 | 0.803592 | 3.238979e-49 | -8.615850e-47 |
| Msa1389830 | Msa1464940 | 0.819855 | 9.328529e-53 | -8.615850e-47 |
| Msa0607050 | Msa1389830 | 0.818223 | 2.192923e-52 | -8.615850e-47 |
| Msa0610430 | Msa1389830 | 0.828467 | 8.846081e-55 | -8.615850e-47 |
| Msa0625720 | Msa1389830 | 0.802284 | 6.034590e-49 | -8.615850e-47 |
| Msa0654720 | Msa1389830 | 0.804425 | 2.173285e-49 | -8.615850e-47 |
| Msa0657970 | Msa1389830 | 0.836011 | 1.201470e-56 | -8.615850e-47 |
| Msa0663390 | Msa1389830 | 0.808933 | 2.427664e-50 | -8.615850e-47 |
| Msa0669440 | Msa1389830 | 0.800167 | 1.636143e-48 | -8.615850e-47 |
| Msa0673460 | Msa1389830 | 0.823797 | 1.141210e-53 | -8.615850e-47 |
| Msa0690150 | Msa1389830 | 0.806849 | 6.736261e-50 | -8.615850e-47 |
| Msa0692830 | Msa1389830 | 0.802998 | 4.298659e-49 | -8.615850e-47 |
| Msa0692950 | Msa1389830 | 0.802745 | 4.848625e-49 | -8.615850e-47 |
| Msa0693380 | Msa1389830 | 0.806298 | 8.805070e-50 | -8.615850e-47 |
| Msa0698360 | Msa1389830 | 0.815943 | 7.134440e-52 | -8.615850e-47 |
| Msa0731180 | Msa1389830 | 0.804737 | 1.870712e-49 | -8.615850e-47 |
| Msa0743720 | Msa1389830 | 0.838495 | 2.780144e-57 | -8.615850e-47 |
| Msa0765380 | Msa1389830 | 0.815503 | 8.940598e-52 | -8.615850e-47 |
| Msa0771720 | Msa1389830 | 0.805792 | 1.125060e-49 | -8.615850e-47 |
| Msa0820770 | Msa1389830 | 0.806644 | 7.442520e-50 | -8.615850e-47 |
| Msa0824680 | Msa1389830 | 0.825021 | 5.880714e-54 | -8.615850e-47 |
| Msa0133130 | Msa1389830 | 0.892469 | 1.542503e-74 | -8.615850e-47 |
| Msa0140780 | Msa1389830 | 0.807241 | 5.564752e-50 | -8.615850e-47 |
| Msa0145310 | Msa1389830 | 0.813538 | 2.432734e-51 | -8.615850e-47 |
| Msa0150820 | Msa1389830 | 0.803788 | 2.949065e-49 | -8.615850e-47 |
| Msa0157100 | Msa1389830 | 0.822856 | 1.893791e-53 | -8.615850e-47 |
| Msa0157290 | Msa1389830 | 0.826671 | 2.387307e-54 | -8.615850e-47 |
| Msa0169860 | Msa1389830 | 0.808210 | 3.464699e-50 | -8.615850e-47 |
| Msa0173990 | Msa1389830 | 0.823520 | 1.325522e-53 | -8.615850e-47 |
| Msa0197660 | Msa1389830 | 0.814890 | 1.223261e-51 | -8.615850e-47 |
| Msa0206010 | Msa1389830 | 0.809436 | 1.893969e-50 | -8.615850e-47 |
| Msa0212930 | Msa1389830 | 0.800923 | 1.147749e-48 | -8.615850e-47 |
| Msa0220440 | Msa1389830 | 0.821066 | 4.918615e-53 | -8.615850e-47 |
| Msa1233500 | Msa1389830 | 0.802068 | 6.685957e-49 | -8.615850e-47 |
| Msa1247250 | Msa1389830 | 0.809138 | 2.194794e-50 | -8.615850e-47 |
| Msa1267430 | Msa1389830 | 0.801267 | 9.759029e-49 | -8.615850e-47 |
| Msa1278840 | Msa1389830 | 0.804921 | 1.712762e-49 | -8.615850e-47 |
| Msa1289280 | Msa1389830 | 0.812961 | 3.257812e-51 | -8.615850e-47 |
| Msa1296760 | Msa1389830 | 0.807311 | 5.378594e-50 | -8.615850e-47 |
| Msa1305190 | Msa1389830 | 0.827619 | 1.415670e-54 | -8.615850e-47 |
| Msa1305340 | Msa1389830 | 0.842189 | 3.009872e-58 | -8.615850e-47 |
| Msa1308380 | Msa1389830 | 0.808689 | 2.737237e-50 | -8.615850e-47 |
| Msa1314340 | Msa1389830 | 0.810867 | 9.308449e-51 | -8.615850e-47 |
| Msa1327680 | Msa1389830 | 0.803855 | 2.855728e-49 | -8.615850e-47 |
| Msa0373930 | Msa1389830 | 0.800216 | 1.599294e-48 | -8.615850e-47 |
| Msa0379640 | Msa1389830 | 0.830266 | 3.234890e-55 | -8.615850e-47 |
| Msa0380740 | Msa1389830 | 0.806679 | 7.318294e-50 | -8.615850e-47 |
| Msa0398710 | Msa1389830 | 0.801943 | 7.092770e-49 | -8.615850e-47 |
| Msa0428590 | Msa1389830 | 0.813905 | 2.020522e-51 | -8.615850e-47 |
| Msa0431060 | Msa1389830 | 0.811201 | 7.881028e-51 | -8.615850e-47 |
| Msa0431690 | Msa1389830 | 0.820133 | 8.056289e-53 | -8.615850e-47 |
| Msa0433640 | Msa1389830 | 0.810486 | 1.125478e-50 | -8.615850e-47 |
| Msa0442670 | Msa1389830 | 0.807072 | 6.042183e-50 | -8.615850e-47 |
| Msa0453890 | Msa1389830 | 0.808267 | 3.368671e-50 | -8.615850e-47 |
| Msa0466390 | Msa1389830 | 0.801918 | 7.176794e-49 | -8.615850e-47 |
| Msa0477130 | Msa1389830 | -0.811769 | 5.930454e-51 | -8.615850e-47 |
| Msa0479660 | Msa1389830 | 0.800686 | 1.282641e-48 | -8.615850e-47 |
| Msa0479970 | Msa1389830 | 0.800042 | 1.734914e-48 | -8.615850e-47 |
| Msa0481530 | Msa1389830 | 0.812230 | 4.706694e-51 | -8.615850e-47 |
| Msa1002480 | Msa1389830 | 0.808483 | 3.029528e-50 | -8.615850e-47 |
| Msa1019710 | Msa1389830 | 0.807924 | 3.985906e-50 | -8.615850e-47 |
| Msa1023920 | Msa1389830 | 0.817803 | 2.728527e-52 | -8.615850e-47 |
| Msa1024750 | Msa1389830 | 0.801853 | 7.403028e-49 | -8.615850e-47 |
| Msa1062920 | Msa1389830 | 0.827700 | 1.353615e-54 | -8.615850e-47 |
| Msa1082500 | Msa1389830 | 0.837873 | 4.019070e-57 | -8.615850e-47 |
| Msa1085200 | Msa1389830 | 0.802206 | 6.261943e-49 | -8.615850e-47 |
| Msa1090260 | Msa1389830 | 0.801200 | 1.007353e-48 | -8.615850e-47 |
| Msa1100050 | Msa1389830 | 0.803452 | 3.463533e-49 | -8.615850e-47 |
| Msa0239800 | Msa1389830 | 0.814567 | 1.442664e-51 | -8.615850e-47 |
| Msa0243100 | Msa1389830 | 0.818303 | 2.102635e-52 | -8.615850e-47 |
| Msa0253200 | Msa1389830 | 0.812681 | 3.752217e-51 | -8.615850e-47 |
| Msa0264150 | Msa1389830 | 0.802629 | 5.122876e-49 | -8.615850e-47 |
| Msa0284420 | Msa1389830 | 0.800760 | 1.238869e-48 | -8.615850e-47 |
| Msa0287410 | Msa1389830 | 0.815919 | 7.224544e-52 | -8.615850e-47 |
| Msa0287650 | Msa1389830 | 0.816522 | 5.295376e-52 | -8.615850e-47 |
| Msa0292030 | Msa1389830 | 0.815872 | 7.400671e-52 | -8.615850e-47 |
| Msa0299580 | Msa1389830 | 0.800937 | 1.140038e-48 | -8.615850e-47 |
| Msa0309550 | Msa1389830 | 0.817556 | 3.101729e-52 | -8.615850e-47 |
| Msa0315290 | Msa1389830 | 0.807662 | 4.529978e-50 | -8.615850e-47 |
| Msa0317510 | Msa1389830 | 0.816814 | 4.553595e-52 | -8.615850e-47 |
| Msa0326110 | Msa1389830 | 0.813682 | 2.261688e-51 | -8.615850e-47 |
| Msa0340450 | Msa1389830 | 0.808952 | 2.404964e-50 | -8.615850e-47 |
| Msa0344910 | Msa1389830 | 0.827317 | 1.672603e-54 | -8.615850e-47 |
| Msa0344980 | Msa1389830 | 0.834101 | 3.640167e-56 | -8.615850e-47 |
| Msa1107900 | Msa1389830 | 0.821404 | 4.111452e-53 | -8.615850e-47 |
| Msa1131220 | Msa1389830 | 0.840645 | 7.673196e-58 | -8.615850e-47 |
| Msa1133710 | Msa1389830 | 0.802718 | 4.912817e-49 | -8.615850e-47 |
| Msa1151720 | Msa1389830 | 0.812069 | 5.103449e-51 | -8.615850e-47 |
| Msa1174040 | Msa1389830 | 0.800386 | 1.476790e-48 | -8.615850e-47 |
| Msa1193290 | Msa1389830 | 0.802797 | 4.730245e-49 | -8.615850e-47 |
| Msa1199220 | Msa1389830 | 0.804871 | 1.754409e-49 | -8.615850e-47 |
| Msa1204530 | Msa1389830 | 0.805326 | 1.409266e-49 | -8.615850e-47 |
| Msa1212940 | Msa1389830 | 0.819872 | 9.242867e-53 | -8.615850e-47 |
| Msa1214890 | Msa1389830 | 0.829860 | 4.063559e-55 | -8.615850e-47 |
| Msa1224480 | Msa1389830 | 0.800090 | 1.696197e-48 | -8.615850e-47 |
| Msa0484780 | Msa1389830 | 0.813856 | 2.070495e-51 | -8.615850e-47 |
| Msa0485120 | Msa1389830 | 0.813559 | 2.407297e-51 | -8.615850e-47 |
| Msa0493630 | Msa1389830 | 0.800664 | 1.296235e-48 | -8.615850e-47 |
| Msa0502100 | Msa1389830 | 0.821111 | 4.802887e-53 | -8.615850e-47 |
| Msa0507680 | Msa1389830 | 0.802601 | 5.192954e-49 | -8.615850e-47 |
| Msa0512750 | Msa1389830 | 0.801559 | 8.503519e-49 | -8.615850e-47 |
| Msa0512900 | Msa1389830 | 0.803223 | 3.862986e-49 | -8.615850e-47 |
| Msa0516440 | Msa1389830 | 0.807471 | 4.974879e-50 | -8.615850e-47 |
| Msa0517330 | Msa1389830 | 0.803508 | 3.371499e-49 | -8.615850e-47 |
| Msa0519740 | Msa1389830 | 0.805531 | 1.276186e-49 | -8.615850e-47 |
| Msa0521540 | Msa1389830 | 0.801148 | 1.032342e-48 | -8.615850e-47 |
| Msa0523460 | Msa1389830 | 0.805604 | 1.232225e-49 | -8.615850e-47 |
| Msa0529890 | Msa1389830 | 0.802666 | 5.034249e-49 | -8.615850e-47 |
| Msa0545070 | Msa1389830 | 0.820941 | 5.257200e-53 | -8.615850e-47 |
| Msa0550430 | Msa1389830 | 0.808434 | 3.103843e-50 | -8.615850e-47 |
| Msa0551890 | Msa1389830 | 0.804559 | 2.037782e-49 | -8.615850e-47 |
| Msa0561230 | Msa1389830 | 0.818436 | 1.962112e-52 | -8.615850e-47 |
| Msa0599890 | Msa1389830 | 0.800606 | 1.331692e-48 | -8.615850e-47 |
| Msa0602240 | Msa1389830 | 0.806007 | 1.013679e-49 | -8.615850e-47 |
| Msa0602250 | Msa1389830 | 0.815554 | 8.711260e-52 | -8.615850e-47 |
| Msa0863870 | Msa1389830 | 0.812340 | 4.453255e-51 | -8.615850e-47 |
| Msa0869120 | Msa1389830 | 0.807988 | 3.861357e-50 | -8.615850e-47 |
| Msa0880140 | Msa1389830 | 0.827564 | 1.459429e-54 | -8.615850e-47 |
| Msa0896750 | Msa1389830 | 0.823985 | 1.031127e-53 | -8.615850e-47 |
| Msa0910000 | Msa1389830 | 0.814131 | 1.800873e-51 | -8.615850e-47 |
| Msa0923330 | Msa1389830 | 0.825415 | 4.745879e-54 | -8.615850e-47 |
| Msa0933230 | Msa1389830 | 0.806848 | 6.738515e-50 | -8.615850e-47 |
| Msa0947660 | Msa1389830 | 0.808554 | 2.925956e-50 | -8.615850e-47 |
| Msa0979100 | Msa1389830 | 0.800980 | 1.117330e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389830 | MtrunA17_Chr1g0202421 | 88.253 | 332 | 19 | 4 | 1 | 331 | 1 | 313 | 0.0 | 574 |
| Msa1389830 | MtrunA17_Chr8g0387621 | 31.285 | 358 | 167 | 12 | 1 | 301 | 1 | 336 | 3.57e-32 | 123 |
| Msa1389830 | MtrunA17_Chr5g0397131 | 40.435 | 230 | 92 | 13 | 104 | 306 | 159 | 370 | 2.63e-29 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389830 | AT5G52870.2 | 31.661 | 319 | 151 | 10 | 1 | 305 | 1 | 266 | 2.72e-32 | 122 |
| Msa1389830 | AT5G52870.1 | 31.661 | 319 | 151 | 10 | 1 | 305 | 1 | 266 | 4.71e-32 | 122 |
| Msa1389830 | AT1G64080.1 | 49.206 | 126 | 45 | 4 | 199 | 306 | 266 | 390 | 9.35e-22 | 95.5 |
Find 67 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAAACTCGCTCTGTTT+TGG | 0.159958 | tig0021300:+103238 | None:intergenic |
| TAGGGGTGATGATTAGTAAT+AGG | 0.303727 | tig0021300:-102585 | Msa1389830:three_prime_UTR |
| CTTTAAACTTCCTCAAGTTC+TGG | 0.310344 | tig0021300:-103799 | Msa1389830:CDS |
| GAAACTTTGGTAGCAAAATT+CGG | 0.358487 | tig0021300:-103280 | Msa1389830:CDS |
| AATGAAATGAAATTAGATTA+GGG | 0.364082 | tig0021300:-102603 | Msa1389830:three_prime_UTR |
| GATTAAGCCTCTTTATGTTA+AGG | 0.375290 | tig0021300:-103189 | Msa1389830:CDS |
| TTGGACATGTGGGTTGTCAT+TGG | 0.380170 | tig0021300:+103652 | None:intergenic |
| AAATGAAATGAAATTAGATT+AGG | 0.383083 | tig0021300:-102604 | Msa1389830:three_prime_UTR |
| TTTGTTGTCGAAATCATTCA+TGG | 0.384507 | tig0021300:+103676 | None:intergenic |
| TTCGAAACCTTAACATAAAG+AGG | 0.384723 | tig0021300:+103182 | None:intergenic |
| CACCGGCGGTTGGCTCTTTG+AGG | 0.387789 | tig0021300:-103094 | Msa1389830:CDS |
| GAAAGTGGTGACGAAGCATT+TGG | 0.391796 | tig0021300:-103039 | Msa1389830:CDS |
| TTTCATTACTCTTTCTATGC+TGG | 0.414240 | tig0021300:+102652 | None:intergenic |
| ATGGATGTTGTTGGTGGTGA+TGG | 0.423562 | tig0021300:-102745 | Msa1389830:CDS |
| GAGCTTGTTCTCCGGCGAAC+AGG | 0.426734 | tig0021300:-102986 | Msa1389830:CDS |
| TTCAGAAAACAGAGAAGAAC+TGG | 0.432309 | tig0021300:-103440 | Msa1389830:CDS |
| CTCTTAACTCTTCCATTCCA+TGG | 0.434217 | tig0021300:-103825 | Msa1389830:exon |
| GGTAGCAAAATTCGGAATCA+AGG | 0.437082 | tig0021300:-103272 | Msa1389830:CDS |
| GATTCTTCAATGGATGTTGT+TGG | 0.447822 | tig0021300:-102754 | Msa1389830:CDS |
| AGGTCGTCGGGTACGGTGGC+CGG | 0.454518 | tig0021300:-103008 | Msa1389830:CDS |
| GAGAACAGCACAAGAAACTT+TGG | 0.457374 | tig0021300:-103293 | Msa1389830:CDS |
| TGCTGATCTTAGAAGTGAAA+TGG | 0.459585 | tig0021300:+103484 | None:intergenic |
| TTCGAAGAGGTATGGTGATA+AGG | 0.470661 | tig0021300:-103165 | Msa1389830:CDS |
| TGCTTCGCCGTCGTCGTCAC+CGG | 0.472585 | tig0021300:-103111 | Msa1389830:CDS |
| TAAGAGTAGGTCGTCGGGTA+CGG | 0.475412 | tig0021300:-103015 | Msa1389830:CDS |
| GTTAAGGTTTCGAAGAGGTA+TGG | 0.486790 | tig0021300:-103173 | Msa1389830:CDS |
| GGTGATAAGGTGAAATTCTC+CGG | 0.500103 | tig0021300:-103152 | Msa1389830:CDS |
| AAGATGAAGAACAGTGATGT+TGG | 0.518672 | tig0021300:+103757 | None:intergenic |
| CTGTTCTCTCTACTAAGCAT+TGG | 0.523196 | tig0021300:+103308 | None:intergenic |
| GTCACCACTTTCATCCCAGC+CGG | 0.525414 | tig0021300:+103050 | None:intergenic |
| AAAGTGGTGACGAAGCATTT+GGG | 0.526267 | tig0021300:-103038 | Msa1389830:CDS |
| GAGGAAGTTTAAAGCATCCA+TGG | 0.529668 | tig0021300:+103808 | None:intergenic |
| AGCTACCGTCATCCCCTCGC+CGG | 0.534216 | tig0021300:+103133 | None:intergenic |
| CAAAACAGAGCGAGTTTCAA+AGG | 0.536455 | tig0021300:-103237 | Msa1389830:CDS |
| TGTTGTTCTTCCAGAACTTG+AGG | 0.537675 | tig0021300:+103789 | None:intergenic |
| TTGGGTAAGAGTAGGTCGTC+GGG | 0.544095 | tig0021300:-103020 | Msa1389830:CDS |
| CCGTCGTCGTCACCGGCGGT+TGG | 0.545238 | tig0021300:-103104 | Msa1389830:CDS |
| AGTTTAAAGCATCCATGGAA+TGG | 0.546782 | tig0021300:+103813 | None:intergenic |
| AAGGTGAAATTCTCCGGCGA+GGG | 0.550532 | tig0021300:-103146 | Msa1389830:CDS |
| AAGGTAAAGATTCTGAAACT+TGG | 0.555444 | tig0021300:+103461 | None:intergenic |
| TTCCTCAAAGAGCCAACCGC+CGG | 0.558224 | tig0021300:+103092 | None:intergenic |
| AGAAGTGAAATGGGTGATTG+TGG | 0.566819 | tig0021300:+103494 | None:intergenic |
| GGTGGCCGGAGCTTGTTCTC+CGG | 0.566890 | tig0021300:-102994 | Msa1389830:CDS |
| GATGTCTTTCTTGATGATGT+TGG | 0.567298 | tig0021300:-102681 | Msa1389830:exon |
| ATTCTCCGGCGAGGGGATGA+CGG | 0.568736 | tig0021300:-103138 | Msa1389830:CDS |
| GCTGATCTTAGAAGTGAAAT+GGG | 0.571175 | tig0021300:+103485 | None:intergenic |
| CGAAGCATTTGGGTAAGAGT+AGG | 0.585768 | tig0021300:-103028 | Msa1389830:CDS |
| TTTGGGTAAGAGTAGGTCGT+CGG | 0.592489 | tig0021300:-103021 | Msa1389830:CDS |
| ACGCTGTTGCAGCAACATGA+TGG | 0.598349 | tig0021300:-102954 | Msa1389830:CDS |
| GTATCATCACTCCTGTTCGC+CGG | 0.598908 | tig0021300:+102975 | None:intergenic |
| TCTTCAATGGATGTTGTTGG+TGG | 0.599000 | tig0021300:-102751 | Msa1389830:CDS |
| GTTCGCCGGAGAACAAGCTC+CGG | 0.605965 | tig0021300:+102989 | None:intergenic |
| TTCGCCGTCGTCGTCACCGG+CGG | 0.615008 | tig0021300:-103108 | Msa1389830:CDS |
| GAGTAGGTCGTCGGGTACGG+TGG | 0.623063 | tig0021300:-103012 | Msa1389830:CDS |
| CCAACCGCCGGTGACGACGA+CGG | 0.626873 | tig0021300:+103104 | None:intergenic |
| TGATTAGTAATAGGTTTGTG+TGG | 0.630154 | tig0021300:-102576 | Msa1389830:three_prime_UTR |
| CTTTGAGGAAAGAGAAACAC+GGG | 0.634887 | tig0021300:-103079 | Msa1389830:CDS |
| ATGAAATGAAATTAGATTAG+GGG | 0.635263 | tig0021300:-102602 | Msa1389830:three_prime_UTR |
| AAGAGATCCTTCAATTCCAG+AGG | 0.646564 | tig0021300:-102906 | Msa1389830:intron |
| AGGTGAAATTCTCCGGCGAG+GGG | 0.653189 | tig0021300:-103145 | Msa1389830:CDS |
| GAATCAGAAGAAAGAAACCA+AGG | 0.653413 | tig0021300:-103375 | Msa1389830:CDS |
| ATGAAGAACAGTGATGTTGG+AGG | 0.663655 | tig0021300:+103760 | None:intergenic |
| TAAGGTGAAATTCTCCGGCG+AGG | 0.664840 | tig0021300:-103147 | Msa1389830:CDS |
| TTTATGTTAAGGTTTCGAAG+AGG | 0.679040 | tig0021300:-103178 | Msa1389830:CDS |
| AATTCGGAATCAAGGAACAG+AGG | 0.681760 | tig0021300:-103264 | Msa1389830:CDS |
| TTAGTAATAGGTTTGTGTGG+TGG | 0.725766 | tig0021300:-102573 | Msa1389830:three_prime_UTR |
| TCTTTGAGGAAAGAGAAACA+CGG | 0.735127 | tig0021300:-103080 | Msa1389830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATATGATTATTTTTGAA+AGG | - | tig0021300:103491-103510 | Msa1389830:CDS | 10.0% |
| !!! | TAAATATGATTATTTTTGAA+AGG | - | tig0021300:103491-103510 | Msa1389830:CDS | 10.0% |
| !!! | ATAATTTTTAGATTCTTCAA+TGG | - | tig0021300:103561-103580 | Msa1389830:CDS | 15.0% |
| !! | AAATGAAATGAAATTAGATT+AGG | - | tig0021300:103721-103740 | Msa1389830:CDS | 15.0% |
| !! | AATGAAATGAAATTAGATTA+GGG | - | tig0021300:103722-103741 | Msa1389830:CDS | 15.0% |
| !!! | ATAATTTTTAGATTCTTCAA+TGG | - | tig0021300:103561-103580 | Msa1389830:CDS | 15.0% |
| !! | AAATGAAATGAAATTAGATT+AGG | - | tig0021300:103721-103740 | Msa1389830:CDS | 15.0% |
| !! | AATGAAATGAAATTAGATTA+GGG | - | tig0021300:103722-103741 | Msa1389830:CDS | 15.0% |
| !! | ATGAAATGAAATTAGATTAG+GGG | - | tig0021300:103723-103742 | Msa1389830:CDS | 20.0% |
| !!! | AATCTATTTTCAGTTGATAT+GGG | - | tig0021300:103803-103822 | Msa1389830:CDS | 20.0% |
| !! | ATGAAATGAAATTAGATTAG+GGG | - | tig0021300:103723-103742 | Msa1389830:CDS | 20.0% |
| !!! | AATCTATTTTCAGTTGATAT+GGG | - | tig0021300:103803-103822 | Msa1389830:CDS | 20.0% |
| !!! | ATAAGAAGTGTTGTTTTTTG+AGG | + | tig0021300:102753-102772 | None:intergenic | 25.0% |
| !! | TTCAACAAGAAATTCTTTTG+AGG | - | tig0021300:103612-103631 | Msa1389830:CDS | 25.0% |
| !!! | GAATCTATTTTCAGTTGATA+TGG | - | tig0021300:103802-103821 | Msa1389830:CDS | 25.0% |
| !!! | ATAAGAAGTGTTGTTTTTTG+AGG | + | tig0021300:102753-102772 | None:intergenic | 25.0% |
| !! | TTCAACAAGAAATTCTTTTG+AGG | - | tig0021300:103612-103631 | Msa1389830:CDS | 25.0% |
| !!! | GAATCTATTTTCAGTTGATA+TGG | - | tig0021300:103802-103821 | Msa1389830:CDS | 25.0% |
| ! | TTTGTTGTCGAAATCATTCA+TGG | + | tig0021300:102652-102671 | None:intergenic | 30.0% |
| ! | GTTTTCTGTTTTGTGAGTTT+TGG | + | tig0021300:102700-102719 | None:intergenic | 30.0% |
| !! | ATTAGTTTCAGTTTTCTCGT+TGG | + | tig0021300:102727-102746 | None:intergenic | 30.0% |
| !!! | AGCACTTTTCTTTTTGAGAT+AGG | + | tig0021300:102789-102808 | None:intergenic | 30.0% |
| !! | AAGGTAAAGATTCTGAAACT+TGG | + | tig0021300:102867-102886 | None:intergenic | 30.0% |
| TAGTTTCACAGAAAAAACCT+TGG | + | tig0021300:102970-102989 | None:intergenic | 30.0% | |
| ! | GAAACTTTGGTAGCAAAATT+CGG | - | tig0021300:103045-103064 | Msa1389830:CDS | 30.0% |
| GATTAAGCCTCTTTATGTTA+AGG | - | tig0021300:103136-103155 | Msa1389830:CDS | 30.0% | |
| TTCGAAACCTTAACATAAAG+AGG | + | tig0021300:103146-103165 | None:intergenic | 30.0% | |
| TTTATGTTAAGGTTTCGAAG+AGG | - | tig0021300:103147-103166 | Msa1389830:CDS | 30.0% | |
| !!! | AATTTTACCTCTGGAATTGA+AGG | + | tig0021300:103429-103448 | None:intergenic | 30.0% |
| ! | TGTGAAACAAATTTTACCTC+TGG | + | tig0021300:103438-103457 | None:intergenic | 30.0% |
| TTTCATTACTCTTTCTATGC+TGG | + | tig0021300:103676-103695 | None:intergenic | 30.0% | |
| TGATTAGTAATAGGTTTGTG+TGG | - | tig0021300:103749-103768 | Msa1389830:CDS | 30.0% | |
| !!! | GTTGATATGGGATCTTTTTT+TGG | - | tig0021300:103815-103834 | Msa1389830:exon | 30.0% |
| ! | TTTGTTGTCGAAATCATTCA+TGG | + | tig0021300:102652-102671 | None:intergenic | 30.0% |
| ! | GTTTTCTGTTTTGTGAGTTT+TGG | + | tig0021300:102700-102719 | None:intergenic | 30.0% |
| !! | ATTAGTTTCAGTTTTCTCGT+TGG | + | tig0021300:102727-102746 | None:intergenic | 30.0% |
| !!! | AGCACTTTTCTTTTTGAGAT+AGG | + | tig0021300:102789-102808 | None:intergenic | 30.0% |
| !! | AAGGTAAAGATTCTGAAACT+TGG | + | tig0021300:102867-102886 | None:intergenic | 30.0% |
| TAGTTTCACAGAAAAAACCT+TGG | + | tig0021300:102970-102989 | None:intergenic | 30.0% | |
| ! | GAAACTTTGGTAGCAAAATT+CGG | - | tig0021300:103045-103064 | Msa1389830:CDS | 30.0% |
| GATTAAGCCTCTTTATGTTA+AGG | - | tig0021300:103136-103155 | Msa1389830:CDS | 30.0% | |
| TTCGAAACCTTAACATAAAG+AGG | + | tig0021300:103146-103165 | None:intergenic | 30.0% | |
| TTTATGTTAAGGTTTCGAAG+AGG | - | tig0021300:103147-103166 | Msa1389830:CDS | 30.0% | |
| !!! | AATTTTACCTCTGGAATTGA+AGG | + | tig0021300:103429-103448 | None:intergenic | 30.0% |
| ! | TGTGAAACAAATTTTACCTC+TGG | + | tig0021300:103438-103457 | None:intergenic | 30.0% |
| TTTCATTACTCTTTCTATGC+TGG | + | tig0021300:103676-103695 | None:intergenic | 30.0% | |
| TGATTAGTAATAGGTTTGTG+TGG | - | tig0021300:103749-103768 | Msa1389830:CDS | 30.0% | |
| !!! | GTTGATATGGGATCTTTTTT+TGG | - | tig0021300:103815-103834 | Msa1389830:exon | 30.0% |
| ! | AGTTTAAAGCATCCATGGAA+TGG | + | tig0021300:102515-102534 | None:intergenic | 35.0% |
| CTTTAAACTTCCTCAAGTTC+TGG | - | tig0021300:102526-102545 | Msa1389830:three_prime_UTR | 35.0% | |
| AAGATGAAGAACAGTGATGT+TGG | + | tig0021300:102571-102590 | None:intergenic | 35.0% | |
| !!! | CTGTTTTGTGAGTTTTGGTT+TGG | + | tig0021300:102695-102714 | None:intergenic | 35.0% |
| !!! | CTTTTTGAGATAGGTTCGTT+TGG | + | tig0021300:102780-102799 | None:intergenic | 35.0% |
| !!! | GGTTTTGAAATGGGTTCAAT+TGG | + | tig0021300:102813-102832 | None:intergenic | 35.0% |
| !!! | GGTGATTGTGGTTTTGAAAT+GGG | + | tig0021300:102822-102841 | None:intergenic | 35.0% |
| GCTGATCTTAGAAGTGAAAT+GGG | + | tig0021300:102843-102862 | None:intergenic | 35.0% | |
| TGCTGATCTTAGAAGTGAAA+TGG | + | tig0021300:102844-102863 | None:intergenic | 35.0% | |
| ! | AGTTCTTCTCTGTTTTCTGA+AGG | + | tig0021300:102886-102905 | None:intergenic | 35.0% |
| TTCAGAAAACAGAGAAGAAC+TGG | - | tig0021300:102885-102904 | Msa1389830:intron | 35.0% | |
| GAATCAGAAGAAAGAAACCA+AGG | - | tig0021300:102950-102969 | Msa1389830:CDS | 35.0% | |
| !! | TTTGAAACTCGCTCTGTTTT+GGG | + | tig0021300:103089-103108 | None:intergenic | 35.0% |
| ! | TCTTTGAGGAAAGAGAAACA+CGG | - | tig0021300:103245-103264 | Msa1389830:CDS | 35.0% |
| GATTCTTCAATGGATGTTGT+TGG | - | tig0021300:103571-103590 | Msa1389830:CDS | 35.0% | |
| !! | GATGTCTTTCTTGATGATGT+TGG | - | tig0021300:103644-103663 | Msa1389830:CDS | 35.0% |
| TAGGGGTGATGATTAGTAAT+AGG | - | tig0021300:103740-103759 | Msa1389830:CDS | 35.0% | |
| TTAGTAATAGGTTTGTGTGG+TGG | - | tig0021300:103752-103771 | Msa1389830:CDS | 35.0% | |
| ! | AGTTTAAAGCATCCATGGAA+TGG | + | tig0021300:102515-102534 | None:intergenic | 35.0% |
| CTTTAAACTTCCTCAAGTTC+TGG | - | tig0021300:102526-102545 | Msa1389830:three_prime_UTR | 35.0% | |
| AAGATGAAGAACAGTGATGT+TGG | + | tig0021300:102571-102590 | None:intergenic | 35.0% | |
| !!! | CTGTTTTGTGAGTTTTGGTT+TGG | + | tig0021300:102695-102714 | None:intergenic | 35.0% |
| !!! | CTTTTTGAGATAGGTTCGTT+TGG | + | tig0021300:102780-102799 | None:intergenic | 35.0% |
| !!! | GGTTTTGAAATGGGTTCAAT+TGG | + | tig0021300:102813-102832 | None:intergenic | 35.0% |
| !!! | GGTGATTGTGGTTTTGAAAT+GGG | + | tig0021300:102822-102841 | None:intergenic | 35.0% |
| GCTGATCTTAGAAGTGAAAT+GGG | + | tig0021300:102843-102862 | None:intergenic | 35.0% | |
| TGCTGATCTTAGAAGTGAAA+TGG | + | tig0021300:102844-102863 | None:intergenic | 35.0% | |
| ! | AGTTCTTCTCTGTTTTCTGA+AGG | + | tig0021300:102886-102905 | None:intergenic | 35.0% |
| TTCAGAAAACAGAGAAGAAC+TGG | - | tig0021300:102885-102904 | Msa1389830:intron | 35.0% | |
| GAATCAGAAGAAAGAAACCA+AGG | - | tig0021300:102950-102969 | Msa1389830:CDS | 35.0% | |
| !! | TTTGAAACTCGCTCTGTTTT+GGG | + | tig0021300:103089-103108 | None:intergenic | 35.0% |
| ! | TCTTTGAGGAAAGAGAAACA+CGG | - | tig0021300:103245-103264 | Msa1389830:CDS | 35.0% |
| GATTCTTCAATGGATGTTGT+TGG | - | tig0021300:103571-103590 | Msa1389830:CDS | 35.0% | |
| !! | GATGTCTTTCTTGATGATGT+TGG | - | tig0021300:103644-103663 | Msa1389830:CDS | 35.0% |
| TAGGGGTGATGATTAGTAAT+AGG | - | tig0021300:103740-103759 | Msa1389830:CDS | 35.0% | |
| TTAGTAATAGGTTTGTGTGG+TGG | - | tig0021300:103752-103771 | Msa1389830:CDS | 35.0% | |
| CTCTTAACTCTTCCATTCCA+TGG | - | tig0021300:102500-102519 | Msa1389830:three_prime_UTR | 40.0% | |
| ! | GAGGAAGTTTAAAGCATCCA+TGG | + | tig0021300:102520-102539 | None:intergenic | 40.0% |
| TGTTGTTCTTCCAGAACTTG+AGG | + | tig0021300:102539-102558 | None:intergenic | 40.0% | |
| ATGAAGAACAGTGATGTTGG+AGG | + | tig0021300:102568-102587 | None:intergenic | 40.0% | |
| !!! | GAGTTTTGGTTTGGACATGT+GGG | + | tig0021300:102686-102705 | None:intergenic | 40.0% |
| !!! | TGAGTTTTGGTTTGGACATG+TGG | + | tig0021300:102687-102706 | None:intergenic | 40.0% |
| !!! | GGGTGATTGTGGTTTTGAAA+TGG | + | tig0021300:102823-102842 | None:intergenic | 40.0% |
| AGAAGTGAAATGGGTGATTG+TGG | + | tig0021300:102834-102853 | None:intergenic | 40.0% | |
| CTGTTCTCTCTACTAAGCAT+TGG | + | tig0021300:103020-103039 | None:intergenic | 40.0% | |
| GAGAACAGCACAAGAAACTT+TGG | - | tig0021300:103032-103051 | Msa1389830:CDS | 40.0% | |
| GGTAGCAAAATTCGGAATCA+AGG | - | tig0021300:103053-103072 | Msa1389830:CDS | 40.0% | |
| AATTCGGAATCAAGGAACAG+AGG | - | tig0021300:103061-103080 | Msa1389830:CDS | 40.0% | |
| !!! | CTTTGAAACTCGCTCTGTTT+TGG | + | tig0021300:103090-103109 | None:intergenic | 40.0% |
| CAAAACAGAGCGAGTTTCAA+AGG | - | tig0021300:103088-103107 | Msa1389830:CDS | 40.0% | |
| GTTAAGGTTTCGAAGAGGTA+TGG | - | tig0021300:103152-103171 | Msa1389830:CDS | 40.0% | |
| ! | TTCGAAGAGGTATGGTGATA+AGG | - | tig0021300:103160-103179 | Msa1389830:CDS | 40.0% |
| GGTGATAAGGTGAAATTCTC+CGG | - | tig0021300:103173-103192 | Msa1389830:CDS | 40.0% | |
| ! | CTTTGAGGAAAGAGAAACAC+GGG | - | tig0021300:103246-103265 | Msa1389830:CDS | 40.0% |
| ! | AAAGTGGTGACGAAGCATTT+GGG | - | tig0021300:103287-103306 | Msa1389830:CDS | 40.0% |
| AAGAGATCCTTCAATTCCAG+AGG | - | tig0021300:103419-103438 | Msa1389830:CDS | 40.0% | |
| TCTTCAATGGATGTTGTTGG+TGG | - | tig0021300:103574-103593 | Msa1389830:CDS | 40.0% | |
| GAGTTAAGAGATAGAGAGAG+AGG | + | tig0021300:102490-102509 | None:intergenic | 40.0% | |
| CTCTTAACTCTTCCATTCCA+TGG | - | tig0021300:102500-102519 | Msa1389830:three_prime_UTR | 40.0% | |
| ! | GAGGAAGTTTAAAGCATCCA+TGG | + | tig0021300:102520-102539 | None:intergenic | 40.0% |
| TGTTGTTCTTCCAGAACTTG+AGG | + | tig0021300:102539-102558 | None:intergenic | 40.0% | |
| ATGAAGAACAGTGATGTTGG+AGG | + | tig0021300:102568-102587 | None:intergenic | 40.0% | |
| !!! | GAGTTTTGGTTTGGACATGT+GGG | + | tig0021300:102686-102705 | None:intergenic | 40.0% |
| !!! | TGAGTTTTGGTTTGGACATG+TGG | + | tig0021300:102687-102706 | None:intergenic | 40.0% |
| !!! | GGGTGATTGTGGTTTTGAAA+TGG | + | tig0021300:102823-102842 | None:intergenic | 40.0% |
| AGAAGTGAAATGGGTGATTG+TGG | + | tig0021300:102834-102853 | None:intergenic | 40.0% | |
| CTGTTCTCTCTACTAAGCAT+TGG | + | tig0021300:103020-103039 | None:intergenic | 40.0% | |
| GAGAACAGCACAAGAAACTT+TGG | - | tig0021300:103032-103051 | Msa1389830:CDS | 40.0% | |
| GGTAGCAAAATTCGGAATCA+AGG | - | tig0021300:103053-103072 | Msa1389830:CDS | 40.0% | |
| AATTCGGAATCAAGGAACAG+AGG | - | tig0021300:103061-103080 | Msa1389830:CDS | 40.0% | |
| !!! | CTTTGAAACTCGCTCTGTTT+TGG | + | tig0021300:103090-103109 | None:intergenic | 40.0% |
| CAAAACAGAGCGAGTTTCAA+AGG | - | tig0021300:103088-103107 | Msa1389830:CDS | 40.0% | |
| GTTAAGGTTTCGAAGAGGTA+TGG | - | tig0021300:103152-103171 | Msa1389830:CDS | 40.0% | |
| ! | TTCGAAGAGGTATGGTGATA+AGG | - | tig0021300:103160-103179 | Msa1389830:CDS | 40.0% |
| GGTGATAAGGTGAAATTCTC+CGG | - | tig0021300:103173-103192 | Msa1389830:CDS | 40.0% | |
| ! | CTTTGAGGAAAGAGAAACAC+GGG | - | tig0021300:103246-103265 | Msa1389830:CDS | 40.0% |
| ! | AAAGTGGTGACGAAGCATTT+GGG | - | tig0021300:103287-103306 | Msa1389830:CDS | 40.0% |
| AAGAGATCCTTCAATTCCAG+AGG | - | tig0021300:103419-103438 | Msa1389830:CDS | 40.0% | |
| TCTTCAATGGATGTTGTTGG+TGG | - | tig0021300:103574-103593 | Msa1389830:CDS | 40.0% | |
| ! | TTGGACATGTGGGTTGTCAT+TGG | + | tig0021300:102676-102695 | None:intergenic | 45.0% |
| ! | AGAGAAACACGGGAGTTTTC+CGG | - | tig0021300:103256-103275 | Msa1389830:CDS | 45.0% |
| ! | GAAAGTGGTGACGAAGCATT+TGG | - | tig0021300:103286-103305 | Msa1389830:CDS | 45.0% |
| ! | CGAAGCATTTGGGTAAGAGT+AGG | - | tig0021300:103297-103316 | Msa1389830:CDS | 45.0% |
| TTTGGGTAAGAGTAGGTCGT+CGG | - | tig0021300:103304-103323 | Msa1389830:CDS | 45.0% | |
| !! | ATGGATGTTGTTGGTGGTGA+TGG | - | tig0021300:103580-103599 | Msa1389830:CDS | 45.0% |
| ! | TTGGACATGTGGGTTGTCAT+TGG | + | tig0021300:102676-102695 | None:intergenic | 45.0% |
| ! | AGAGAAACACGGGAGTTTTC+CGG | - | tig0021300:103256-103275 | Msa1389830:CDS | 45.0% |
| ! | GAAAGTGGTGACGAAGCATT+TGG | - | tig0021300:103286-103305 | Msa1389830:CDS | 45.0% |
| ! | CGAAGCATTTGGGTAAGAGT+AGG | - | tig0021300:103297-103316 | Msa1389830:CDS | 45.0% |
| TTTGGGTAAGAGTAGGTCGT+CGG | - | tig0021300:103304-103323 | Msa1389830:CDS | 45.0% | |
| !! | ATGGATGTTGTTGGTGGTGA+TGG | - | tig0021300:103580-103599 | Msa1389830:CDS | 45.0% |
| TAAGGTGAAATTCTCCGGCG+AGG | - | tig0021300:103178-103197 | Msa1389830:CDS | 50.0% | |
| AAGGTGAAATTCTCCGGCGA+GGG | - | tig0021300:103179-103198 | Msa1389830:CDS | 50.0% | |
| ! | TTTTCCGGCTGGGATGAAAG+TGG | - | tig0021300:103271-103290 | Msa1389830:CDS | 50.0% |
| TTGGGTAAGAGTAGGTCGTC+GGG | - | tig0021300:103305-103324 | Msa1389830:CDS | 50.0% | |
| TAAGAGTAGGTCGTCGGGTA+CGG | - | tig0021300:103310-103329 | Msa1389830:CDS | 50.0% | |
| GTATCATCACTCCTGTTCGC+CGG | + | tig0021300:103353-103372 | None:intergenic | 50.0% | |
| ACGCTGTTGCAGCAACATGA+TGG | - | tig0021300:103371-103390 | Msa1389830:CDS | 50.0% | |
| TAAGGTGAAATTCTCCGGCG+AGG | - | tig0021300:103178-103197 | Msa1389830:CDS | 50.0% | |
| AAGGTGAAATTCTCCGGCGA+GGG | - | tig0021300:103179-103198 | Msa1389830:CDS | 50.0% | |
| ! | TTTTCCGGCTGGGATGAAAG+TGG | - | tig0021300:103271-103290 | Msa1389830:CDS | 50.0% |
| TTGGGTAAGAGTAGGTCGTC+GGG | - | tig0021300:103305-103324 | Msa1389830:CDS | 50.0% | |
| TAAGAGTAGGTCGTCGGGTA+CGG | - | tig0021300:103310-103329 | Msa1389830:CDS | 50.0% | |
| GTATCATCACTCCTGTTCGC+CGG | + | tig0021300:103353-103372 | None:intergenic | 50.0% | |
| ACGCTGTTGCAGCAACATGA+TGG | - | tig0021300:103371-103390 | Msa1389830:CDS | 50.0% | |
| AGGTGAAATTCTCCGGCGAG+GGG | - | tig0021300:103180-103199 | Msa1389830:CDS | 55.0% | |
| TTCCTCAAAGAGCCAACCGC+CGG | + | tig0021300:103236-103255 | None:intergenic | 55.0% | |
| ! | AAACACGGGAGTTTTCCGGC+TGG | - | tig0021300:103260-103279 | Msa1389830:CDS | 55.0% |
| ! | AACACGGGAGTTTTCCGGCT+GGG | - | tig0021300:103261-103280 | Msa1389830:CDS | 55.0% |
| GTCACCACTTTCATCCCAGC+CGG | + | tig0021300:103278-103297 | None:intergenic | 55.0% | |
| AGGTGAAATTCTCCGGCGAG+GGG | - | tig0021300:103180-103199 | Msa1389830:CDS | 55.0% | |
| TTCCTCAAAGAGCCAACCGC+CGG | + | tig0021300:103236-103255 | None:intergenic | 55.0% | |
| ! | AAACACGGGAGTTTTCCGGC+TGG | - | tig0021300:103260-103279 | Msa1389830:CDS | 55.0% |
| ! | AACACGGGAGTTTTCCGGCT+GGG | - | tig0021300:103261-103280 | Msa1389830:CDS | 55.0% |
| GTCACCACTTTCATCCCAGC+CGG | + | tig0021300:103278-103297 | None:intergenic | 55.0% | |
| ATTCTCCGGCGAGGGGATGA+CGG | - | tig0021300:103187-103206 | Msa1389830:CDS | 60.0% | |
| GTTCGCCGGAGAACAAGCTC+CGG | + | tig0021300:103339-103358 | None:intergenic | 60.0% | |
| ! | GAGCTTGTTCTCCGGCGAAC+AGG | - | tig0021300:103339-103358 | Msa1389830:CDS | 60.0% |
| ATTCTCCGGCGAGGGGATGA+CGG | - | tig0021300:103187-103206 | Msa1389830:CDS | 60.0% | |
| GTTCGCCGGAGAACAAGCTC+CGG | + | tig0021300:103339-103358 | None:intergenic | 60.0% | |
| ! | GAGCTTGTTCTCCGGCGAAC+AGG | - | tig0021300:103339-103358 | Msa1389830:CDS | 60.0% |
| AGCTACCGTCATCCCCTCGC+CGG | + | tig0021300:103195-103214 | None:intergenic | 65.0% | |
| TGCTTCGCCGTCGTCGTCAC+CGG | - | tig0021300:103214-103233 | Msa1389830:CDS | 65.0% | |
| ! | CACCGGCGGTTGGCTCTTTG+AGG | - | tig0021300:103231-103250 | Msa1389830:CDS | 65.0% |
| GAGTAGGTCGTCGGGTACGG+TGG | - | tig0021300:103313-103332 | Msa1389830:CDS | 65.0% | |
| ! | GGTGGCCGGAGCTTGTTCTC+CGG | - | tig0021300:103331-103350 | Msa1389830:CDS | 65.0% |
| AGCTACCGTCATCCCCTCGC+CGG | + | tig0021300:103195-103214 | None:intergenic | 65.0% | |
| TGCTTCGCCGTCGTCGTCAC+CGG | - | tig0021300:103214-103233 | Msa1389830:CDS | 65.0% | |
| ! | CACCGGCGGTTGGCTCTTTG+AGG | - | tig0021300:103231-103250 | Msa1389830:CDS | 65.0% |
| GAGTAGGTCGTCGGGTACGG+TGG | - | tig0021300:103313-103332 | Msa1389830:CDS | 65.0% | |
| ! | GGTGGCCGGAGCTTGTTCTC+CGG | - | tig0021300:103331-103350 | Msa1389830:CDS | 65.0% |
| TTCGCCGTCGTCGTCACCGG+CGG | - | tig0021300:103217-103236 | Msa1389830:CDS | 70.0% | |
| CCAACCGCCGGTGACGACGA+CGG | + | tig0021300:103224-103243 | None:intergenic | 70.0% | |
| AGGTCGTCGGGTACGGTGGC+CGG | - | tig0021300:103317-103336 | Msa1389830:CDS | 70.0% | |
| TTCGCCGTCGTCGTCACCGG+CGG | - | tig0021300:103217-103236 | Msa1389830:CDS | 70.0% | |
| CCAACCGCCGGTGACGACGA+CGG | + | tig0021300:103224-103243 | None:intergenic | 70.0% | |
| AGGTCGTCGGGTACGGTGGC+CGG | - | tig0021300:103317-103336 | Msa1389830:CDS | 70.0% | |
| CCGTCGTCGTCACCGGCGGT+TGG | - | tig0021300:103221-103240 | Msa1389830:CDS | 75.0% | |
| CCGTCGTCGTCACCGGCGGT+TGG | - | tig0021300:103221-103240 | Msa1389830:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021300 | gene | 102489 | 103858 | 102489 | ID=Msa1389830;Name=Msa1389830 |
| tig0021300 | mRNA | 102489 | 103858 | 102489 | ID=Msa1389830-mRNA-1;Parent=Msa1389830;Name=Msa1389830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=30|1|1|1|1|1|2|201|335 |
| tig0021300 | exon | 102489 | 102775 | 102489 | ID=Msa1389830-mRNA-1:exon:11816;Parent=Msa1389830-mRNA-1 |
| tig0021300 | exon | 102907 | 103858 | 102907 | ID=Msa1389830-mRNA-1:exon:11815;Parent=Msa1389830-mRNA-1 |
| tig0021300 | five_prime_UTR | 103829 | 103858 | 103829 | ID=Msa1389830-mRNA-1:five_prime_utr;Parent=Msa1389830-mRNA-1 |
| tig0021300 | CDS | 102907 | 103828 | 102907 | ID=Msa1389830-mRNA-1:cds;Parent=Msa1389830-mRNA-1 |
| tig0021300 | CDS | 102690 | 102775 | 102690 | ID=Msa1389830-mRNA-1:cds;Parent=Msa1389830-mRNA-1 |
| tig0021300 | three_prime_UTR | 102489 | 102689 | 102489 | ID=Msa1389830-mRNA-1:three_prime_utr;Parent=Msa1389830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
