AlfalfaGEDB | MS.gene52725

M. sativa cultivar XinJiangDaYe / MS.gene52725

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52725.t1	XP_013449672.1	95.4	218	10	0	1	218	1	218	8.20E-113	416.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52725.t1	M1C5M7	82.9	152	25	1	66	216	82	233	1.0e-66	254.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52725.t1	A0A072UCX0	95.4	218	10	0	1	218	1	218	5.9e-113	416.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene52725	0.829297	5.57E-55	-1.69E-46
MS.gene049171	MS.gene52725	0.897065	2.02E-76	-1.69E-46
MS.gene049217	MS.gene52725	0.804385	2.22E-49	-1.69E-46
MS.gene049222	MS.gene52725	0.875352	3.30E-68	-1.69E-46
MS.gene049232	MS.gene52725	0.84745	1.15E-59	-1.69E-46
MS.gene049257	MS.gene52725	0.831422	1.68E-55	-1.69E-46
MS.gene049285	MS.gene52725	0.859954	2.89E-63	-1.69E-46
MS.gene049320	MS.gene52725	0.829028	6.47E-55	-1.69E-46
MS.gene049609	MS.gene52725	0.847586	1.05E-59	-1.69E-46
MS.gene049627	MS.gene52725	0.821135	4.74E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52725.t1	MTR_7g094220	95.413	218	10	0	1	218	1	218	2.11e-146	406

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52725.t1	AT2G48070	80.282	142	28	0	77	218	56	197	4.11e-84	248
MS.gene52725.t1	AT2G48070	80.282	142	28	0	77	218	56	197	4.11e-84	248
MS.gene52725.t1	AT2G48070	78.082	146	28	1	77	218	56	201	9.15e-82	242

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Find 52 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCAGGTTGGTCTGAA+GGG	0.540412	7.2:+15247350	None:intergenic
AAAGGTGATGATTTGAGGAA+TGG	0.491588	7.2:+15248177	None:intergenic
AAAGTACTTCCAGGTACTGC+AGG	0.496122	7.2:+15247445	None:intergenic
AACTGGAGAGACTAAAGGGT+AGG	0.601028	7.2:+15248145	None:intergenic
AAGGGTAGGGTACCCTATAA+AGG	0.426575	7.2:+15248159	None:intergenic
AAGTACTTCCAGGTACTGCA+GGG	0.609643	7.2:+15247446	None:intergenic
AATAGACAAAGAACTTAAAA+AGG	0.327859	7.2:-15247964	MS.gene52725:intron
ACAGTATACAAAGTACTTCC+AGG	0.467276	7.2:+15247436	None:intergenic
ACCTGATCTTTGGAGATTGA+TGG	0.394975	7.2:-15247338	MS.gene52725:CDS
ACTGGAGAGACTAAAGGGTA+GGG	0.645359	7.2:+15248146	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAGGACTTCAAAAAGAAT+GGG	+	chr7.2:15247959-15247978	None:intergenic	30.0%
CAATTACAAGCTAAATTCGA+TGG	+	chr7.2:15247485-15247504	None:intergenic	30.0%
CATTGCTATGATTCTTTACT+TGG	-	chr7.2:15247795-15247814	MS.gene52725:intron	30.0%
CTCAAATCATCACCTTTATA+GGG	-	chr7.2:15246409-15246428	MS.gene52725:intron	30.0%
GACAAAGAACTTAAAAAGGT+TGG	-	chr7.2:15246620-15246639	MS.gene52725:CDS	30.0%
GCAGATATAATAGCTTTCTT+TGG	-	chr7.2:15247993-15248012	MS.gene52725:CDS	30.0%
GGTGACAAATTAACATATCT+AGG	-	chr7.2:15247578-15247597	MS.gene52725:intron	30.0%
GTAATACTGAAGTCTAACAT+TGG	+	chr7.2:15247553-15247572	None:intergenic	30.0%
TAAGCTAGATAAAAGACGTA+AGG	+	chr7.2:15247676-15247695	None:intergenic	30.0%
TACAACTTCTTCATTTGAAG+TGG	+	chr7.2:15246531-15246550	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	15246389	15248213	15246389	ID=MS.gene52725
chr7.2	mRNA	15246389	15248213	15246389	ID=MS.gene52725.t1;Parent=MS.gene52725
chr7.2	exon	15247965	15248213	15247965	ID=MS.gene52725.t1.exon1;Parent=MS.gene52725.t1
chr7.2	CDS	15247965	15248213	15247965	ID=cds.MS.gene52725.t1;Parent=MS.gene52725.t1
chr7.2	exon	15247314	15247524	15247314	ID=MS.gene52725.t1.exon2;Parent=MS.gene52725.t1
chr7.2	CDS	15247314	15247524	15247314	ID=cds.MS.gene52725.t1;Parent=MS.gene52725.t1
chr7.2	exon	15246571	15246740	15246571	ID=MS.gene52725.t1.exon3;Parent=MS.gene52725.t1
chr7.2	CDS	15246571	15246740	15246571	ID=cds.MS.gene52725.t1;Parent=MS.gene52725.t1
chr7.2	exon	15246389	15246415	15246389	ID=MS.gene52725.t1.exon4;Parent=MS.gene52725.t1
chr7.2	CDS	15246389	15246415	15246389	ID=cds.MS.gene52725.t1;Parent=MS.gene52725.t1

Gene Sequence

>MS.gene52725

ATGAACACTTTAATCCATTCCTCAAATCATCACCTTTATAGGGTACCCTACCCTTTAGTCTCTCCAGTTCAAACCAACAAAACCAACCTTCCAAAGTACCTTTCAACCTTAAGACGCTCACCTTATCCCATTGCATGTGCCACTTCAAATGAAGAAGTTGTAGAAGAGATTAAAGTAGTTGAATCCAACACCAATGAAGAAAACACTTCCTCTGCTTTTTCTACTCCAATAGACAAAGAACTTAAAAAGGTTGGTTGCTTCATACCATCTTTCTATAATCCTTCAATTTTCAATTCAAATCGTATTTTAAGGACACCCATTTTGTAAAAATCTATGCTTTTCTAAAAATTGATCAAGGTTCTGTTTGTATTGATTTATTTGAGCTTATGACATAATCACTTTCTAGACTATTTTATTTAGCTGTTTTTAACTTAGTGTTATAAGTTCTTTAGGATAGCTTATGAACATAATTTGGCTTTATTTTATATGTAGTTATAGAAATAACTTATACGTAATCGTTTATACAATAAGCACTTATGCTGTAAGTGCTTAATTAATTTGTTTATCTAAACAAGAGCTTCAGTTAGAAAGGTTTTTGTTGTTGCATGTTGCTTGAGAGTAAATGAGGGCATTAGAAAGATAGAGAAAAATGGTGTTTTTTGCATTTGAAATGTTTGTTGAATTGATAGGTGGCTCAGAAGACTGCTGCAACCTTTGCACCGAGGGCTTCGACGGCATCAAAAAACCCTGCAGTACCTGGAAGTACTTTGTATACTGTTTTTGAAGTTCAAGCGTATGTATCAATGTTGTTGGGTGGAGCTTTGTCTTTTAATCTCATTTTCCCTTCAGACCAACCTGATCTTTGGAGATTGATGGGAATGTGGTCTGTTTGGATGTTCAGTAAGTTCAAAACCTACCAATTTTTTATCCTGATTTTGAAAGTTGCATAAATGAACAAGTGCTGGAATGGTAGTTCATGCTTTTCCAGTTATCATTCTGCTGAATGTTTGATTGATCGGTAGTTAAAATTTCACAACCTTTTGTAAATATGAGAAAGAATATTAGGTTTTGAGACATTTGTGTCTAACTTAACCCATCGAATTTAGCTTGTAATTGAAAATTGTCAAGAATTTAAAAGTTGTATTTAGACATAATCTTTCGCCAATGTTAGACTTCAGTATTACCCAATGGTGACAAATTAACATATCTAGGATAGACTTTAATAGCGTCATAGATTTGTTTCGTAACTCAATTCCATAAACCAGACTTGTAAGACGAGGATTGCCTTACGTCTTTTATCTAGCTTATGTGTGGAACTTTAGTTTTCTCAAATGAACAATGCTTTTGCTTTTGAAACTGATTGTAATTTTGACCAATAGTTGTTCCAGCTCCTTCTTGCAAGATCTCATTGCTATGATTCTTTACTTGGAGTAAAAAATTGGTGATAAATGCAATTCATTTATATATATGCAGCAATTCCTTCCTTGCGAGCTCGAGATTGCTCAAAGAATGAGAAAGAAGCTCTCAACTATCTTTTCCTCCTAGTTCCCTTGCTCAATGTTGCAATCCCATTCTTTTTGAAGTCCTTTGCTGTTGTTTGGTCGGCAGATATAATAGCTTTCTTTGGAATGTATGCATGGAAGGTACATACGATTTATTAGGATTTATTCCTCTAACGAGCAATAAACTAAAGTAAAATATCTCAATTATACAATTTAATTTTGTTACTTTGTACTAAAAAGTGAGTTAATTTTGAGCCATGTTATCAATATTTGACGATATCTTCCTTTTCTTGCAGCTTGGATGGCTCCAGAAAACGGACTAG

Protein sequence

>MS.gene52725.t1

MNTLIHSSNHHLYRVPYPLVSPVQTNKTNLPKYLSTLRRSPYPIACATSNEEVVEEIKVVESNTNEENTSSAFSTPIDKELKKVAQKTAATFAPRASTASKNPAVPGSTLYTVFEVQAYVSMLLGGALSFNLIFPSDQPDLWRLMGMWSVWMFTIPSLRARDCSKNEKEALNYLFLLVPLLNVAIPFFLKSFAVVWSADIIAFFGMYAWKLGWLQKTD