AlfalfaGEDB | MS.gene71609

M. sativa cultivar XinJiangDaYe / MS.gene71609

KEGG: K23735
GO: GO:0003674 GO:0003824 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009249 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0018065 GO:0018193 GO:0018205 GO:0019538 GO:0033819 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051604 GO:0071704 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71609.t1	XP_013469979.1	97	235	7	0	1	235	1	235	2.10E-130	474.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71609.t1	Q9SXP7	74.0	235	61	0	1	235	1	235	1.8e-101	370.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71609.t1	A0A072VQE6	97.0	235	7	0	1	235	1	235	1.5e-130	474.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene71609	0.8251	5.63E-54	-1.69E-46
MS.gene049171	MS.gene71609	0.833787	4.36E-56	-1.69E-46
MS.gene049217	MS.gene71609	0.859149	5.05E-63	-1.69E-46
MS.gene049222	MS.gene71609	0.852167	5.51E-61	-1.69E-46
MS.gene049285	MS.gene71609	0.85388	1.78E-61	-1.69E-46
MS.gene049320	MS.gene71609	0.833683	4.63E-56	-1.69E-46
MS.gene049425	MS.gene71609	-0.80854	2.95E-50	-1.69E-46
MS.gene049427	MS.gene71609	0.806341	8.62E-50	-1.69E-46
MS.gene049609	MS.gene71609	0.864856	9.00E-65	-1.69E-46
MS.gene049805	MS.gene71609	0.867434	1.37E-65	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene015317	MS.gene71609	PPI
MS.gene059677	MS.gene71609	PPI
MS.gene09661	MS.gene71609	PPI
MS.gene21474	MS.gene71609	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71609.t1	MTR_1g106190	97.021	235	7	0	1	235	1	235	2.04e-174	479
MS.gene71609.t1	MTR_3g111580	32.143	168	98	7	1	156	44	207	4.00e-16	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71609.t1	AT1G04640	74.043	235	61	0	1	235	1	235	1.42e-132	373
MS.gene71609.t1	AT1G04640	74.043	235	61	0	1	235	1	235	1.42e-132	373
MS.gene71609.t1	AT1G47578	35.323	201	117	4	23	214	70	266	5.43e-34	123
MS.gene71609.t1	AT4G31050	35.047	214	122	6	14	214	54	263	5.95e-34	123

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Find 56 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCTTGAGGTATGGAAAA+TGG	0.246851	1.4:+82143966	MS.gene71609:CDS
AAGCATCCTCCTTCCAAACC+AGG	0.571828	1.4:-82144605	None:intergenic
AATGGGAGTCGTCAACTATT+TGG	0.263377	1.4:+82143984	MS.gene71609:CDS
ACCCTTGAGGTATGGAAAAT+GGG	0.459093	1.4:+82143967	MS.gene71609:CDS
ACTGCAAGAAAAGCTAGTCT+TGG	0.489810	1.4:+82144017	MS.gene71609:CDS
AGAAATAATACAAGAGCAGT+TGG	0.475927	1.4:+82144548	MS.gene71609:CDS
AGATAGGTGCAATTGGTGTT+CGG	0.495508	1.4:+82144382	MS.gene71609:CDS
ATATCCTATTATATCGCTCC+GGG	0.515465	1.4:+82144230	MS.gene71609:CDS
ATCCTGATTTAAACTACTTT+AGG	0.329725	1.4:+82144448	MS.gene71609:CDS
ATCTGTTCCAATTCTGACTG+AGG	0.581218	1.4:-82144138	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATAATACAAGAGCAGT+TGG	+	chr1.4:82144548-82144567	MS.gene71609:CDS	30.0%
TAATAGGATATAAAACGGCT+TGG	-	chr1.4:82144221-82144240	None:intergenic	30.0%
TATATCCTATTATATCGCTC+CGG	+	chr1.4:82144229-82144248	MS.gene71609:CDS	30.0%
TGAGTTAACTATGATTGAAC+TGG	+	chr1.4:82144290-82144309	MS.gene71609:CDS	30.0%
TGCCTAAAGTAGTTTAAATC+AGG	-	chr1.4:82144453-82144472	None:intergenic	30.0%
ATATCCTATTATATCGCTCC+GGG	+	chr1.4:82144230-82144249	MS.gene71609:CDS	35.0%
ATTAATCCCTCAGTCAGAAT+TGG	+	chr1.4:82144131-82144150	MS.gene71609:CDS	35.0%
GAAAGAAAGATAGGTGCAAT+TGG	+	chr1.4:82144375-82144394	MS.gene71609:CDS	35.0%
TCTTTATCAGCAATTCCACA+CGG	-	chr1.4:82144483-82144502	None:intergenic	35.0%
TTAACTATGATTGAACTGGC+AGG	+	chr1.4:82144294-82144313	MS.gene71609:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	82143952	82144659	82143952	ID=MS.gene71609
chr1.4	mRNA	82143952	82144659	82143952	ID=MS.gene71609.t1;Parent=MS.gene71609
chr1.4	exon	82143952	82144659	82143952	ID=MS.gene71609.t1.exon1;Parent=MS.gene71609.t1
chr1.4	CDS	82143952	82144659	82143952	ID=cds.MS.gene71609.t1;Parent=MS.gene71609.t1

Gene Sequence

>MS.gene71609

ATGAGGGCTTTGCGAACCCTTGAGGTATGGAAAATGGGAGTCGTCAACTATTTGGATGCGTTAAAACTGCAAGAAAAGCTAGTCTTGGATAGAAAATCTCATAAGAGATGTGATACTCTTCTATCTTTGCAACACCCTCCTACATACACAGTTGGCAAAAGACAAACTGTTCATAATTTATTAATCCCTCAGTCAGAATTGGAACAGATTGGCGCTGAGCTTCACTACACACAACGTGGAGGAGACATTACATTTCATGGTCCACACCAAGCCGTTTTATATCCTATTATATCGCTCCGGGACACGGGACTTGGTGCTAGAAAATTTGTAGAAAAAATTGAGTTAACTATGATTGAACTGGCAGGTCTATACGGTGTGAAAGCTTGTCCTGGACGGAAGTGCGAGACTGGGGTGTGGGTTGGAGAAAGAAAGATAGGTGCAATTGGTGTTCGGATATCGAATGCAATCACTTCTCATGGGATGGCGTTTAACATTGATCCTGATTTAAACTACTTTAGGCACATTGTACCGTGTGGAATTGCTGATAAAGAAGTGACATCTTTGAGAAGAGAGACAGATTTTGACCTTCCCGCAGAAGAAATAATACAAGAGCAGTTGGTTTCATGTTTTGCAAGAATTTTTGGTTATGATAACCTGGTTTGGAAGGAGGATGCTTCTATATTATCTGATAAAAATGAAACTGAATGA

Protein sequence

>MS.gene71609.t1

MRALRTLEVWKMGVVNYLDALKLQEKLVLDRKSHKRCDTLLSLQHPPTYTVGKRQTVHNLLIPQSELEQIGAELHYTQRGGDITFHGPHQAVLYPIISLRDTGLGARKFVEKIELTMIELAGLYGVKACPGRKCETGVWVGERKIGAIGVRISNAITSHGMAFNIDPDLNYFRHIVPCGIADKEVTSLRRETDFDLPAEEIIQEQLVSCFARIFGYDNLVWKEDASILSDKNETE