Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92989.t1 | XP_013470086.1 | 98.8 | 254 | 3 | 0 | 1 | 254 | 1 | 254 | 2.20E-141 | 511.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92989.t1 | Q94JT5 | 81.2 | 229 | 43 | 0 | 24 | 252 | 43 | 271 | 3.0e-107 | 389.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92989.t1 | I3SIK3 | 98.8 | 254 | 3 | 0 | 1 | 254 | 1 | 254 | 1.6e-141 | 511.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene92989 | 0.886421 | 3.47E-72 | -1.69E-46 |
| MS.gene049173 | MS.gene92989 | 0.814992 | 1.16E-51 | -1.69E-46 |
| MS.gene049217 | MS.gene92989 | 0.81119 | 7.92E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene92989 | 0.890529 | 9.07E-74 | -1.69E-46 |
| MS.gene049232 | MS.gene92989 | 0.844086 | 9.40E-59 | -1.69E-46 |
| MS.gene049285 | MS.gene92989 | 0.880007 | 7.82E-70 | -1.69E-46 |
| MS.gene049320 | MS.gene92989 | 0.861034 | 1.36E-63 | -1.69E-46 |
| MS.gene049609 | MS.gene92989 | 0.849981 | 2.28E-60 | -1.69E-46 |
| MS.gene049633 | MS.gene92989 | 0.869909 | 2.17E-66 | -1.69E-46 |
| MS.gene049805 | MS.gene92989 | 0.801651 | 8.14E-49 | -1.69E-46 |
| MS.gene049865 | MS.gene92989 | 0.848516 | 5.83E-60 | -1.69E-46 |
| MS.gene05010 | MS.gene92989 | 0.850198 | 1.98E-60 | -1.69E-46 |
| MS.gene050163 | MS.gene92989 | 0.818199 | 2.22E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene92989 | 0.824623 | 7.30E-54 | -1.69E-46 |
| MS.gene050170 | MS.gene92989 | 0.878795 | 2.10E-69 | -1.69E-46 |
| MS.gene050216 | MS.gene92989 | 0.801202 | 1.01E-48 | -1.69E-46 |
| MS.gene050323 | MS.gene92989 | 0.861662 | 8.76E-64 | -1.69E-46 |
| MS.gene050333 | MS.gene92989 | 0.817529 | 3.15E-52 | -1.69E-46 |
| MS.gene050338 | MS.gene92989 | -0.802652 | 5.07E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene92989 | 0.811759 | 5.96E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene92989 | 0.87359 | 1.31E-67 | -1.69E-46 |
| MS.gene050504 | MS.gene92989 | 0.868858 | 4.78E-66 | -1.69E-46 |
| MS.gene050518 | MS.gene92989 | 0.859875 | 3.05E-63 | -1.69E-46 |
| MS.gene050538 | MS.gene92989 | 0.820085 | 8.26E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene92989 | 0.872267 | 3.63E-67 | -1.69E-46 |
| MS.gene050593 | MS.gene92989 | 0.818104 | 2.33E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene92989 | 0.878484 | 2.71E-69 | -1.69E-46 |
| MS.gene050675 | MS.gene92989 | 0.842077 | 3.22E-58 | -1.69E-46 |
| MS.gene050699 | MS.gene92989 | 0.85798 | 1.13E-62 | -1.69E-46 |
| MS.gene050747 | MS.gene92989 | 0.862584 | 4.57E-64 | -1.69E-46 |
| MS.gene050772 | MS.gene92989 | 0.862197 | 6.01E-64 | -1.69E-46 |
| MS.gene05080 | MS.gene92989 | 0.866174 | 3.46E-65 | -1.69E-46 |
| MS.gene05081 | MS.gene92989 | 0.845755 | 3.33E-59 | -1.69E-46 |
| MS.gene050868 | MS.gene92989 | 0.891721 | 3.07E-74 | -1.69E-46 |
| MS.gene050871 | MS.gene92989 | 0.889099 | 3.28E-73 | -1.69E-46 |
| MS.gene050876 | MS.gene92989 | 0.805765 | 1.14E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene92989 | 0.860389 | 2.14E-63 | -1.69E-46 |
| MS.gene050950 | MS.gene92989 | 0.856611 | 2.86E-62 | -1.69E-46 |
| MS.gene050986 | MS.gene92989 | 0.840118 | 1.05E-57 | -1.69E-46 |
| MS.gene051268 | MS.gene92989 | 0.822989 | 1.76E-53 | -1.69E-46 |
| MS.gene051317 | MS.gene92989 | 0.847438 | 1.16E-59 | -1.69E-46 |
| MS.gene051366 | MS.gene92989 | -0.805087 | 1.58E-49 | -1.69E-46 |
| MS.gene051551 | MS.gene92989 | 0.814506 | 1.49E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene92989 | 0.813335 | 2.70E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene92989 | 0.807219 | 5.63E-50 | -1.69E-46 |
| MS.gene051734 | MS.gene92989 | 0.808119 | 3.62E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene92989 | 0.818942 | 1.51E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene92989 | 0.866836 | 2.13E-65 | -1.69E-46 |
| MS.gene051858 | MS.gene92989 | 0.830325 | 3.13E-55 | -1.69E-46 |
| MS.gene051949 | MS.gene92989 | 0.81767 | 2.92E-52 | -1.69E-46 |
| MS.gene052066 | MS.gene92989 | 0.831617 | 1.51E-55 | -1.69E-46 |
| MS.gene052164 | MS.gene92989 | 0.84681 | 1.72E-59 | -1.69E-46 |
| MS.gene052482 | MS.gene92989 | 0.856959 | 2.26E-62 | -1.69E-46 |
| MS.gene052486 | MS.gene92989 | 0.863398 | 2.56E-64 | -1.69E-46 |
| MS.gene052501 | MS.gene92989 | 0.8032 | 3.90E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene92989 | 0.867102 | 1.75E-65 | -1.69E-46 |
| MS.gene052504 | MS.gene92989 | 0.802391 | 5.74E-49 | -1.69E-46 |
| MS.gene052506 | MS.gene92989 | 0.846116 | 2.66E-59 | -1.69E-46 |
| MS.gene052615 | MS.gene92989 | 0.827961 | 1.17E-54 | -1.69E-46 |
| MS.gene052820 | MS.gene92989 | 0.806749 | 7.07E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene92989 | 0.851214 | 1.03E-60 | -1.69E-46 |
| MS.gene052823 | MS.gene92989 | 0.857434 | 1.64E-62 | -1.69E-46 |
| MS.gene052825 | MS.gene92989 | 0.864001 | 1.66E-64 | -1.69E-46 |
| MS.gene052870 | MS.gene92989 | 0.816717 | 4.79E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene92989 | 0.83205 | 1.18E-55 | -1.69E-46 |
| MS.gene052966 | MS.gene92989 | 0.890828 | 6.92E-74 | -1.69E-46 |
| MS.gene053203 | MS.gene92989 | 0.870513 | 1.38E-66 | -1.69E-46 |
| MS.gene053207 | MS.gene92989 | 0.83622 | 1.06E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene92989 | 0.848564 | 5.66E-60 | -1.69E-46 |
| MS.gene053286 | MS.gene92989 | 0.85196 | 6.31E-61 | -1.69E-46 |
| MS.gene053436 | MS.gene92989 | 0.834781 | 2.46E-56 | -1.69E-46 |
| MS.gene053479 | MS.gene92989 | 0.874789 | 5.13E-68 | -1.69E-46 |
| MS.gene053480 | MS.gene92989 | 0.832833 | 7.55E-56 | -1.69E-46 |
| MS.gene053574 | MS.gene92989 | 0.856057 | 4.16E-62 | -1.69E-46 |
| MS.gene053626 | MS.gene92989 | 0.808915 | 2.45E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene92989 | 0.820539 | 6.50E-53 | -1.69E-46 |
| MS.gene053633 | MS.gene92989 | 0.835926 | 1.26E-56 | -1.69E-46 |
| MS.gene053824 | MS.gene92989 | 0.888668 | 4.82E-73 | -1.69E-46 |
| MS.gene053916 | MS.gene92989 | 0.818881 | 1.56E-52 | -1.69E-46 |
| MS.gene054003 | MS.gene92989 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene054344 | MS.gene92989 | 0.815162 | 1.06E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene92989 | 0.838996 | 2.06E-57 | -1.69E-46 |
| MS.gene054595 | MS.gene92989 | 0.839907 | 1.20E-57 | -1.69E-46 |
| MS.gene054600 | MS.gene92989 | 0.882719 | 8.23E-71 | -1.69E-46 |
| MS.gene054642 | MS.gene92989 | 0.854889 | 9.11E-62 | -1.69E-46 |
| MS.gene054706 | MS.gene92989 | -0.828677 | 7.87E-55 | -1.69E-46 |
| MS.gene05470 | MS.gene92989 | 0.852696 | 3.90E-61 | -1.69E-46 |
| MS.gene054927 | MS.gene92989 | 0.817082 | 3.97E-52 | -1.69E-46 |
| MS.gene05494 | MS.gene92989 | 0.811388 | 7.18E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene92989 | 0.876883 | 9.80E-69 | -1.69E-46 |
| MS.gene055206 | MS.gene92989 | 0.838376 | 2.98E-57 | -1.69E-46 |
| MS.gene055224 | MS.gene92989 | 0.841753 | 3.92E-58 | -1.69E-46 |
| MS.gene055289 | MS.gene92989 | 0.819762 | 9.80E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene92989 | 0.869257 | 3.55E-66 | -1.69E-46 |
| MS.gene055502 | MS.gene92989 | 0.88651 | 3.21E-72 | -1.69E-46 |
| MS.gene055577 | MS.gene92989 | 0.907892 | 3.10E-81 | -1.69E-46 |
| MS.gene055722 | MS.gene92989 | 0.832551 | 8.86E-56 | -1.69E-46 |
| MS.gene055748 | MS.gene92989 | 0.879415 | 1.27E-69 | -1.69E-46 |
| MS.gene055750 | MS.gene92989 | 0.87916 | 1.56E-69 | -1.69E-46 |
| MS.gene055751 | MS.gene92989 | 0.883688 | 3.63E-71 | -1.69E-46 |
| MS.gene055776 | MS.gene92989 | 0.838952 | 2.12E-57 | -1.69E-46 |
| MS.gene055849 | MS.gene92989 | 0.804675 | 1.93E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene92989 | 0.890737 | 7.52E-74 | -1.69E-46 |
| MS.gene055941 | MS.gene92989 | 0.847355 | 1.22E-59 | -1.69E-46 |
| MS.gene056046 | MS.gene92989 | 0.840549 | 8.13E-58 | -1.69E-46 |
| MS.gene056166 | MS.gene92989 | 0.814209 | 1.73E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene92989 | 0.82096 | 5.20E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene92989 | 0.828128 | 1.07E-54 | -1.69E-46 |
| MS.gene056446 | MS.gene92989 | 0.824899 | 6.29E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene92989 | 0.900781 | 5.19E-78 | -1.69E-46 |
| MS.gene056510 | MS.gene92989 | 0.884871 | 1.32E-71 | -1.69E-46 |
| MS.gene056610 | MS.gene92989 | 0.830881 | 2.29E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene92989 | 0.863398 | 2.56E-64 | -1.69E-46 |
| MS.gene056692 | MS.gene92989 | 0.861717 | 8.43E-64 | -1.69E-46 |
| MS.gene057014 | MS.gene92989 | -0.812458 | 4.20E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene92989 | 0.840958 | 6.35E-58 | -1.69E-46 |
| MS.gene057086 | MS.gene92989 | 0.80731 | 5.38E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene92989 | 0.82051 | 6.60E-53 | -1.69E-46 |
| MS.gene057332 | MS.gene92989 | 0.823033 | 1.72E-53 | -1.69E-46 |
| MS.gene057416 | MS.gene92989 | 0.813809 | 2.12E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene92989 | 0.839768 | 1.30E-57 | -1.69E-46 |
| MS.gene057734 | MS.gene92989 | 0.81889 | 1.55E-52 | -1.69E-46 |
| MS.gene057831 | MS.gene92989 | 0.846846 | 1.68E-59 | -1.69E-46 |
| MS.gene057856 | MS.gene92989 | 0.816892 | 4.38E-52 | -1.69E-46 |
| MS.gene057857 | MS.gene92989 | 0.84321 | 1.61E-58 | -1.69E-46 |
| MS.gene05787 | MS.gene92989 | 0.817473 | 3.24E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene92989 | 0.814506 | 1.49E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene92989 | -0.840235 | 9.82E-58 | -1.69E-46 |
| MS.gene058338 | MS.gene92989 | 0.838548 | 2.69E-57 | -1.69E-46 |
| MS.gene05837 | MS.gene92989 | 0.871943 | 4.65E-67 | -1.69E-46 |
| MS.gene058382 | MS.gene92989 | -0.80354 | 3.32E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene92989 | 0.87193 | 4.69E-67 | -1.69E-46 |
| MS.gene058544 | MS.gene92989 | 0.858686 | 6.95E-63 | -1.69E-46 |
| MS.gene058723 | MS.gene92989 | 0.820648 | 6.14E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene92989 | 0.876943 | 9.33E-69 | -1.69E-46 |
| MS.gene058838 | MS.gene92989 | 0.87342 | 1.49E-67 | -1.69E-46 |
| MS.gene059022 | MS.gene92989 | 0.866214 | 3.36E-65 | -1.69E-46 |
| MS.gene059023 | MS.gene92989 | 0.895686 | 7.57E-76 | -1.69E-46 |
| MS.gene05912 | MS.gene92989 | 0.811903 | 5.55E-51 | -1.69E-46 |
| MS.gene05913 | MS.gene92989 | 0.829826 | 4.14E-55 | -1.69E-46 |
| MS.gene05914 | MS.gene92989 | 0.823079 | 1.68E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene92989 | 0.814379 | 1.59E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene92989 | 0.801507 | 8.71E-49 | -1.69E-46 |
| MS.gene059526 | MS.gene92989 | -0.8064 | 8.38E-50 | -1.69E-46 |
| MS.gene059667 | MS.gene92989 | 0.847258 | 1.30E-59 | -1.69E-46 |
| MS.gene059677 | MS.gene92989 | 0.86083 | 1.57E-63 | -1.69E-46 |
| MS.gene059718 | MS.gene92989 | 0.865241 | 6.81E-65 | -1.69E-46 |
| MS.gene059756 | MS.gene92989 | 0.816749 | 4.71E-52 | -1.69E-46 |
| MS.gene059801 | MS.gene92989 | 0.868452 | 6.46E-66 | -1.69E-46 |
| MS.gene059837 | MS.gene92989 | 0.846888 | 1.64E-59 | -1.69E-46 |
| MS.gene059865 | MS.gene92989 | 0.874989 | 4.39E-68 | -1.69E-46 |
| MS.gene059902 | MS.gene92989 | 0.823793 | 1.14E-53 | -1.69E-46 |
| MS.gene05996 | MS.gene92989 | 0.80683 | 6.80E-50 | -1.69E-46 |
| MS.gene06000 | MS.gene92989 | 0.852678 | 3.94E-61 | -1.69E-46 |
| MS.gene06027 | MS.gene92989 | 0.821531 | 3.84E-53 | -1.69E-46 |
| MS.gene060482 | MS.gene92989 | 0.812713 | 3.69E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene92989 | -0.832996 | 6.87E-56 | -1.69E-46 |
| MS.gene060703 | MS.gene92989 | 0.864083 | 1.57E-64 | -1.69E-46 |
| MS.gene060762 | MS.gene92989 | 0.896531 | 3.38E-76 | -1.69E-46 |
| MS.gene060778 | MS.gene92989 | 0.837929 | 3.89E-57 | -1.69E-46 |
| MS.gene06077 | MS.gene92989 | 0.875188 | 3.75E-68 | -1.69E-46 |
| MS.gene060823 | MS.gene92989 | -0.813375 | 2.64E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene92989 | 0.819162 | 1.34E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene92989 | 0.854868 | 9.24E-62 | -1.69E-46 |
| MS.gene06097 | MS.gene92989 | 0.818792 | 1.63E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene92989 | 0.91056 | 1.63E-82 | -1.69E-46 |
| MS.gene061044 | MS.gene92989 | -0.800477 | 1.42E-48 | -1.69E-46 |
| MS.gene061150 | MS.gene92989 | 0.84288 | 1.97E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92989.t1 | MTR_1g107525 | 98.819 | 254 | 3 | 0 | 1 | 254 | 1 | 254 | 0.0 | 516 |
| MS.gene92989.t1 | MTR_1g107525 | 99.471 | 189 | 1 | 0 | 1 | 189 | 1 | 189 | 4.64e-139 | 389 |
| MS.gene92989.t1 | MTR_1g107510 | 73.305 | 236 | 62 | 1 | 18 | 252 | 34 | 269 | 9.67e-124 | 353 |
| MS.gene92989.t1 | MTR_1g107510 | 74.419 | 172 | 43 | 1 | 19 | 189 | 35 | 206 | 5.48e-88 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92989.t1 | AT4G35220 | 81.223 | 229 | 43 | 0 | 24 | 252 | 43 | 271 | 1.85e-139 | 393 |
| MS.gene92989.t1 | AT4G34180 | 69.697 | 231 | 69 | 1 | 24 | 253 | 25 | 255 | 3.03e-117 | 336 |
| MS.gene92989.t1 | AT1G44542 | 68.722 | 227 | 70 | 1 | 28 | 253 | 45 | 271 | 8.34e-115 | 330 |
Find 59 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGGACATCATCAAGTTTC+AGG | 0.182140 | 1.2:-80295417 | None:intergenic |
| CAGTCCATTGCTTACCTCTT+AGG | 0.209663 | 1.2:+80295452 | MS.gene92989:CDS |
| ATGCATTCTAATCAAGTATT+AGG | 0.250536 | 1.2:+80295504 | MS.gene92989:CDS |
| TGCTTACCTCTTAGGTTGGC+TGG | 0.313330 | 1.2:+80295460 | MS.gene92989:CDS |
| GTCTCAAAAGCTGGCATGTC+TGG | 0.322806 | 1.2:-80291235 | None:intergenic |
| CCAAGAGATTCTAATATAAC+TGG | 0.371707 | 1.2:+80291567 | MS.gene92989:CDS |
| CTCGACTTGCACGTCCTCAA+TGG | 0.395006 | 1.2:+80291421 | MS.gene92989:CDS |
| ACCTGTCGGTATTCAATGTT+CGG | 0.395211 | 1.2:-80292631 | None:intergenic |
| TTCGATCATTACTTCGATGC+TGG | 0.405597 | 1.2:+80291382 | MS.gene92989:CDS |
| AACACTGATATTAAACTTGT+TGG | 0.407040 | 1.2:+80293255 | MS.gene92989:CDS |
| TAACCTTATCCCTCCTCGTC+GGG | 0.420313 | 1.2:+80291165 | MS.gene92989:CDS |
| GAGTACACGCTTTACACCTC+TGG | 0.430957 | 1.2:-80292606 | None:intergenic |
| CCATTGCTTACCTCTTAGGT+TGG | 0.432052 | 1.2:+80295456 | MS.gene92989:CDS |
| CCAGTTATATTAGAATCTCT+TGG | 0.437156 | 1.2:-80291567 | None:intergenic |
| TTGATTAGAATGCATCGTAT+TGG | 0.437438 | 1.2:-80295496 | None:intergenic |
| ATGAAGCTTCCAACTCATAC+TGG | 0.440868 | 1.2:+80291331 | MS.gene92989:CDS |
| AATCATAAGAAGCAACAGAT+AGG | 0.460354 | 1.2:-80294383 | None:intergenic |
| CTTAGGTTGGCTGGTGCTGA+GGG | 0.467458 | 1.2:+80295469 | MS.gene92989:CDS |
| CTTCCCGACGAGGAGGGATA+AGG | 0.478603 | 1.2:-80291168 | None:intergenic |
| TGGACTGAATATAATCCTGC+TGG | 0.490321 | 1.2:-80295436 | None:intergenic |
| GGTACTCATGTTGATGCTCC+TGG | 0.490330 | 1.2:+80291352 | MS.gene92989:CDS |
| GTCGCCGTTCACCGCCGTTA+CGG | 0.494137 | 1.2:-80291140 | None:intergenic |
| TCTTAGGTTGGCTGGTGCTG+AGG | 0.495320 | 1.2:+80295468 | MS.gene92989:CDS |
| GGTAGTAGCGTTAGCCTTGG+TGG | 0.508800 | 1.2:+80291108 | MS.gene92989:CDS |
| TCAGCACCAGCCAACCTAAG+AGG | 0.516231 | 1.2:-80295466 | None:intergenic |
| GGAACATCAACTAATAGAGC+AGG | 0.518734 | 1.2:-80291546 | None:intergenic |
| CATTTCAGAGTTATTAGCGA+TGG | 0.534072 | 1.2:-80291311 | None:intergenic |
| GAATTTGACTCGAGCTATGT+GGG | 0.544572 | 1.2:+80293198 | MS.gene92989:CDS |
| CCATCTTTAGTCTCAAAAGC+TGG | 0.545793 | 1.2:-80291244 | None:intergenic |
| TAATGATCGAAGACATGTCC+AGG | 0.547630 | 1.2:-80291370 | None:intergenic |
| AAACTTGATGATGTCCCAGC+AGG | 0.554591 | 1.2:+80295421 | MS.gene92989:CDS |
| TAGGCGGCTTATGTTTCAGA+AGG | 0.554622 | 1.2:+80293176 | MS.gene92989:intron |
| TTTGAGACTAAAGATGGTAT+CGG | 0.559563 | 1.2:+80291250 | MS.gene92989:CDS |
| CGTATACTTCCCGACGAGGA+GGG | 0.573203 | 1.2:-80291174 | None:intergenic |
| GGAATTTGACTCGAGCTATG+TGG | 0.575810 | 1.2:+80293197 | MS.gene92989:CDS |
| AGTACACGCTTTACACCTCT+GGG | 0.579818 | 1.2:-80292605 | None:intergenic |
| GGACTGAATATAATCCTGCT+GGG | 0.585452 | 1.2:-80295435 | None:intergenic |
| ATCTCCGTAACGGCGGTGAA+CGG | 0.587103 | 1.2:+80291136 | MS.gene92989:CDS |
| TCCGAACATTGAATACCGAC+AGG | 0.592325 | 1.2:+80292630 | MS.gene92989:CDS |
| ACATGAGTACCAGTATGAGT+TGG | 0.596387 | 1.2:-80291340 | None:intergenic |
| TCGTATACTTCCCGACGAGG+AGG | 0.600935 | 1.2:-80291175 | None:intergenic |
| AAATCTTCGATATCACTCAC+AGG | 0.611969 | 1.2:+80291206 | MS.gene92989:CDS |
| TATGTGGGATTCACTGTGGA+TGG | 0.615993 | 1.2:+80293213 | MS.gene92989:CDS |
| AGCGGTAGTAGCGTTAGCCT+TGG | 0.620390 | 1.2:+80291105 | MS.gene92989:CDS |
| GAAGATGAAACAAACCATTG+AGG | 0.623787 | 1.2:-80291435 | None:intergenic |
| ATAACCTTATCCCTCCTCGT+CGG | 0.627407 | 1.2:+80291164 | MS.gene92989:CDS |
| ATGGTATCGGTCAATTCTTG+TGG | 0.629228 | 1.2:+80291263 | MS.gene92989:CDS |
| TCGAAATATGAAGTATCAAG+CGG | 0.632220 | 1.2:+80291087 | None:intergenic |
| CCAACCTAAGAGGTAAGCAA+TGG | 0.639046 | 1.2:-80295456 | None:intergenic |
| GGATGGCGCAAAGTGGCTAG+TGG | 0.640794 | 1.2:+80293230 | MS.gene92989:CDS |
| GAACATCAACTAATAGAGCA+GGG | 0.644133 | 1.2:-80291545 | None:intergenic |
| GGTGGTTACAATCTCCGTAA+CGG | 0.645027 | 1.2:+80291126 | MS.gene92989:CDS |
| CGTCGGGAAGTATACGACAA+TGG | 0.663670 | 1.2:+80291181 | MS.gene92989:CDS |
| TCACTGTGGATGGCGCAAAG+TGG | 0.674320 | 1.2:+80293223 | MS.gene92989:CDS |
| GAGCTATGTGGGATTCACTG+TGG | 0.716645 | 1.2:+80293209 | MS.gene92989:CDS |
| GGTTACAATCTCCGTAACGG+CGG | 0.716921 | 1.2:+80291129 | MS.gene92989:CDS |
| TACGGAGATTGTAACCACCA+AGG | 0.724247 | 1.2:-80291122 | None:intergenic |
| TTGTCGTATACTTCCCGACG+AGG | 0.749274 | 1.2:-80291178 | None:intergenic |
| AAGTCATTAAATATTCCCAG+AGG | 0.764509 | 1.2:+80292590 | MS.gene92989:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATTTAATTATGATTTA+TGG | + | chr1.2:80293016-80293035 | MS.gene92989:intron | 10.0% |
| !! | AACATTTAATTATGATTTAT+GGG | + | chr1.2:80293017-80293036 | MS.gene92989:intron | 10.0% |
| !! | ACAACATTAATAATTAATAT+GGG | + | chr1.2:80291981-80292000 | MS.gene92989:intron | 10.0% |
| !! | AACATTAATAATTAATATGG+GGG | + | chr1.2:80291983-80292002 | MS.gene92989:intron | 15.0% |
| !! | AATTGAAAGAGAAAAAAATT+GGG | - | chr1.2:80294296-80294315 | None:intergenic | 15.0% |
| !! | AATTGAAGATATTTATAACT+AGG | - | chr1.2:80293723-80293742 | None:intergenic | 15.0% |
| !! | ATAACATATTTAATCAATTC+TGG | - | chr1.2:80292343-80292362 | None:intergenic | 15.0% |
| !! | CAACATTAATAATTAATATG+GGG | + | chr1.2:80291982-80292001 | MS.gene92989:intron | 15.0% |
| !! | CACAACATTAATAATTAATA+TGG | + | chr1.2:80291980-80291999 | MS.gene92989:intron | 15.0% |
| !! | TATTAGATGAAGATAATATT+TGG | + | chr1.2:80293439-80293458 | MS.gene92989:intron | 15.0% |
| !!! | AAATTGATTTTGATGTATTT+AGG | + | chr1.2:80294763-80294782 | MS.gene92989:intron | 15.0% |
| !!! | AATCAATTGTTATTTTGATT+TGG | + | chr1.2:80292477-80292496 | MS.gene92989:intron | 15.0% |
| !!! | AATTAGTTTTAAGTCAAAAA+GGG | - | chr1.2:80294518-80294537 | None:intergenic | 15.0% |
| !!! | TACATTTTTGCTTATAATTT+AGG | + | chr1.2:80292289-80292308 | MS.gene92989:intron | 15.0% |
| !!! | TTCAATTCTTAACATTTTTT+TGG | + | chr1.2:80294309-80294328 | MS.gene92989:intron | 15.0% |
| !!! | TTTGGTTTAATTTCATATTT+AGG | + | chr1.2:80291629-80291648 | MS.gene92989:intron | 15.0% |
| !! | AAAAATGTACATAAATGCAT+TGG | - | chr1.2:80292278-80292297 | None:intergenic | 20.0% |
| !! | AAGATGATCATTATAATTAG+GGG | - | chr1.2:80291958-80291977 | None:intergenic | 20.0% |
| !! | AGAAGATGATCATTATAATT+AGG | - | chr1.2:80291960-80291979 | None:intergenic | 20.0% |
| !! | ATTGAAAGAGAAAAAAATTG+GGG | - | chr1.2:80294295-80294314 | None:intergenic | 20.0% |
| !! | CATAAAATTTAATATCTCTG+TGG | - | chr1.2:80293898-80293917 | None:intergenic | 20.0% |
| !! | CTTATAGAAATAAGTTATGT+TGG | - | chr1.2:80291714-80291733 | None:intergenic | 20.0% |
| !! | GAAGATGATCATTATAATTA+GGG | - | chr1.2:80291959-80291978 | None:intergenic | 20.0% |
| !! | GAATCCAATAAAAAATGAAA+TGG | - | chr1.2:80294140-80294159 | None:intergenic | 20.0% |
| !! | GAATTGAAAGAGAAAAAAAT+TGG | - | chr1.2:80294297-80294316 | None:intergenic | 20.0% |
| !! | GAGTTATTCTAAATCTTATT+AGG | + | chr1.2:80294099-80294118 | MS.gene92989:intron | 20.0% |
| !! | TATAAAAGACACTGAAATTT+GGG | - | chr1.2:80292447-80292466 | None:intergenic | 20.0% |
| !! | TATTGGATTCAAGATTATAA+TGG | + | chr1.2:80294150-80294169 | MS.gene92989:intron | 20.0% |
| !! | TGAGAAAGTTTGATTAAAAT+AGG | - | chr1.2:80292420-80292439 | None:intergenic | 20.0% |
| !!! | AAAGATATTTTCGAATTTGT+TGG | + | chr1.2:80295226-80295245 | MS.gene92989:intron | 20.0% |
| !!! | AATTCTTTGAAAGTTTTCTA+TGG | - | chr1.2:80292395-80292414 | None:intergenic | 20.0% |
| !!! | ATAGCTTCTGATAATTTTTT+TGG | + | chr1.2:80291611-80291630 | MS.gene92989:intron | 20.0% |
| !!! | CAATTAGTTTTAAGTCAAAA+AGG | - | chr1.2:80294519-80294538 | None:intergenic | 20.0% |
| !!! | GTTTGACTTTATTTTATCTT+TGG | + | chr1.2:80291781-80291800 | MS.gene92989:intron | 20.0% |
| !!! | TAGGCATAATTTTATTTTCT+TGG | + | chr1.2:80293942-80293961 | MS.gene92989:intron | 20.0% |
| !!! | TTCACCATTTCATTTTTTAT+TGG | + | chr1.2:80294133-80294152 | MS.gene92989:intron | 20.0% |
| ! | AACACTGATATTAAACTTGT+TGG | + | chr1.2:80293255-80293274 | MS.gene92989:CDS | 25.0% |
| ! | AATGTAGCATATTAAAGTTG+GGG | + | chr1.2:80292976-80292995 | MS.gene92989:intron | 25.0% |
| ! | AATGTTAAGTGGTTTATGTT+CGG | - | chr1.2:80294911-80294930 | None:intergenic | 25.0% |
| ! | ACATAAACAATTACTCATTC+TGG | + | chr1.2:80291821-80291840 | MS.gene92989:intron | 25.0% |
| ! | ATATCACAAGTTAACTGAAT+TGG | + | chr1.2:80292664-80292683 | MS.gene92989:intron | 25.0% |
| ! | ATCATATCCAATTGTCAAAT+TGG | + | chr1.2:80295059-80295078 | MS.gene92989:intron | 25.0% |
| ! | CAATGTAGCATATTAAAGTT+GGG | + | chr1.2:80292975-80292994 | MS.gene92989:intron | 25.0% |
| ! | GTATAAAAGACACTGAAATT+TGG | - | chr1.2:80292448-80292467 | None:intergenic | 25.0% |
| ! | GTGTTTATCATATACTACTT+AGG | - | chr1.2:80292315-80292334 | None:intergenic | 25.0% |
| ! | TAAATATGTTATACTGTACG+AGG | + | chr1.2:80292351-80292370 | MS.gene92989:intron | 25.0% |
| ! | TCCAAGTTGCAAATAAATAA+TGG | - | chr1.2:80294039-80294058 | None:intergenic | 25.0% |
| ! | TCCATTATTTATTTGCAACT+TGG | + | chr1.2:80294035-80294054 | MS.gene92989:intron | 25.0% |
| ! | TCTAAATCTTATTAGGTAAC+TGG | + | chr1.2:80294106-80294125 | MS.gene92989:intron | 25.0% |
| ! | TGTATTCATATTCTTTGTAC+TGG | + | chr1.2:80292921-80292940 | MS.gene92989:intron | 25.0% |
| ! | TTATTTATGTGATGTCATGT+AGG | + | chr1.2:80294351-80294370 | MS.gene92989:intron | 25.0% |
| ! | TTGAGTGTAAAAATCACATT+TGG | - | chr1.2:80294854-80294873 | None:intergenic | 25.0% |
| !! | ATAAATAATGGAATAGAGAG+AGG | - | chr1.2:80294027-80294046 | None:intergenic | 25.0% |
| !! | TTCAATTGAATGAGTTGAAT+AGG | + | chr1.2:80293923-80293942 | MS.gene92989:intron | 25.0% |
| !! | TTGTTTATGTGATATTTTGC+AGG | + | chr1.2:80291522-80291541 | MS.gene92989:intron | 25.0% |
| !!! | AGGAATTGAAGTTTTAAACT+CGG | - | chr1.2:80293703-80293722 | None:intergenic | 25.0% |
| !!! | CACTTTATACATTGTTTTTC+TGG | + | chr1.2:80293375-80293394 | MS.gene92989:intron | 25.0% |
| !!! | TAATTTTCACTTTTCAGTGT+TGG | + | chr1.2:80294621-80294640 | MS.gene92989:intron | 25.0% |
| !!! | TATTTAGGACATGTTTTGAT+TGG | + | chr1.2:80291644-80291663 | MS.gene92989:intron | 25.0% |
| !!! | TTTATTTTCTTGGTGAACAT+AGG | + | chr1.2:80293952-80293971 | MS.gene92989:intron | 25.0% |
| !!! | TTTGATTTGGAAAAACTAGA+AGG | + | chr1.2:80292490-80292509 | MS.gene92989:intron | 25.0% |
| AAATGTCGGAATAAATGTCA+CGG | - | chr1.2:80293320-80293339 | None:intergenic | 30.0% | |
| AAGAAAAATCCCAGGTTTAT+TGG | - | chr1.2:80294585-80294604 | None:intergenic | 30.0% | |
| AAGTCATTAAATATTCCCAG+AGG | + | chr1.2:80292590-80292609 | MS.gene92989:CDS | 30.0% | |
| AATCATAAGAAGCAACAGAT+AGG | - | chr1.2:80294386-80294405 | None:intergenic | 30.0% | |
| ACAAGCTTCAGTTTCTAATT+AGG | - | chr1.2:80293148-80293167 | None:intergenic | 30.0% | |
| ACACTTACCAATTTGACAAT+TGG | - | chr1.2:80295069-80295088 | None:intergenic | 30.0% | |
| ACCTACTTTCACACTTATTA+AGG | + | chr1.2:80291864-80291883 | MS.gene92989:intron | 30.0% | |
| AGTAGTAGTATGGTCATAAA+AGG | - | chr1.2:80294220-80294239 | None:intergenic | 30.0% | |
| AGTTGAGACAAACACATAAT+TGG | - | chr1.2:80292844-80292863 | None:intergenic | 30.0% | |
| ATTCATAAGTGCAACTAATC+AGG | - | chr1.2:80293533-80293552 | None:intergenic | 30.0% | |
| CAAACAAAACATCAATGAAC+TGG | - | chr1.2:80295133-80295152 | None:intergenic | 30.0% | |
| CCAAGAGATTCTAATATAAC+TGG | + | chr1.2:80291567-80291586 | MS.gene92989:CDS | 30.0% | |
| CCAGTTATATTAGAATCTCT+TGG | - | chr1.2:80291570-80291589 | None:intergenic | 30.0% | |
| GATTAACAAAGAAAAATCCC+AGG | - | chr1.2:80294593-80294612 | None:intergenic | 30.0% | |
| GCAATGTAGCATATTAAAGT+TGG | + | chr1.2:80292974-80292993 | MS.gene92989:intron | 30.0% | |
| TAAGTCAAAGTTTAGGGAAA+CGG | - | chr1.2:80293803-80293822 | None:intergenic | 30.0% | |
| TAATTGCATCTCAATTCTCA+AGG | + | chr1.2:80294533-80294552 | MS.gene92989:intron | 30.0% | |
| TACAAATGCAAAACTAGACA+CGG | - | chr1.2:80293347-80293366 | None:intergenic | 30.0% | |
| TACATTCAGATAACACATAC+AGG | - | chr1.2:80292895-80292914 | None:intergenic | 30.0% | |
| TCCTTAATAAGTGTGAAAGT+AGG | - | chr1.2:80291868-80291887 | None:intergenic | 30.0% | |
| TTAATGTTCCATACACAACT+GGG | + | chr1.2:80294664-80294683 | MS.gene92989:intron | 30.0% | |
| TTAGTTGCACTTATGAATAG+TGG | + | chr1.2:80293535-80293554 | MS.gene92989:intron | 30.0% | |
| TTCACACTTATTAAGGATGA+CGG | + | chr1.2:80291871-80291890 | MS.gene92989:intron | 30.0% | |
| TTGATTAGAATGCATCGTAT+TGG | - | chr1.2:80295499-80295518 | None:intergenic | 30.0% | |
| TTGTAACCATGAACATCATA+GGG | + | chr1.2:80294714-80294733 | MS.gene92989:intron | 30.0% | |
| TTGTTCCTTTGGATAATTGA+AGG | + | chr1.2:80295290-80295309 | MS.gene92989:intron | 30.0% | |
| TTTAAAAACACAAGGTGAGA+TGG | - | chr1.2:80294417-80294436 | None:intergenic | 30.0% | |
| TTTAATGTTCCATACACAAC+TGG | + | chr1.2:80294663-80294682 | MS.gene92989:intron | 30.0% | |
| TTTGTAACCATGAACATCAT+AGG | + | chr1.2:80294713-80294732 | MS.gene92989:intron | 30.0% | |
| ! | AAAGTGAGTTGAATGTTAAG+TGG | - | chr1.2:80294922-80294941 | None:intergenic | 30.0% |
| ! | AGAGAACATCTAAAACACAA+CGG | - | chr1.2:80293626-80293645 | None:intergenic | 30.0% |
| ! | ATGTTCTCTCTGATTTTTGT+TGG | + | chr1.2:80293637-80293656 | MS.gene92989:intron | 30.0% |
| ! | TTTGAGACTAAAGATGGTAT+CGG | + | chr1.2:80291250-80291269 | MS.gene92989:CDS | 30.0% |
| !! | ACAAACACATAATTGGTCTT+TGG | - | chr1.2:80292837-80292856 | None:intergenic | 30.0% |
| !! | ACCTTGTGTTTTTAAAAGAC+AGG | + | chr1.2:80294421-80294440 | MS.gene92989:CDS | 30.0% |
| !! | CCTTGTGTTTTTAAAAGACA+GGG | + | chr1.2:80294422-80294441 | MS.gene92989:CDS | 30.0% |
| !! | CTGATATTAAACTTGTTGGT+AGG | + | chr1.2:80293259-80293278 | MS.gene92989:intron | 30.0% |
| !! | GTTTTAAGTCAAAAAGGGTA+GGG | - | chr1.2:80294513-80294532 | None:intergenic | 30.0% |
| !!! | AGTGTTGGTATCATTTGTTT+TGG | + | chr1.2:80294636-80294655 | MS.gene92989:intron | 30.0% |
| !!! | AGTTTTAAGTCAAAAAGGGT+AGG | - | chr1.2:80294514-80294533 | None:intergenic | 30.0% |
| !!! | TTTTTTTGGCTCAATTTTGC+TGG | + | chr1.2:80294323-80294342 | MS.gene92989:intron | 30.0% |
| AAATCTTCGATATCACTCAC+AGG | + | chr1.2:80291206-80291225 | MS.gene92989:CDS | 35.0% | |
| AACTGAATTGGCACTGTTAT+AGG | + | chr1.2:80292676-80292695 | MS.gene92989:intron | 35.0% | |
| AATGACTTCATAACTTCAGC+TGG | - | chr1.2:80292578-80292597 | None:intergenic | 35.0% | |
| AATGTCGGAATAAATGTCAC+GGG | - | chr1.2:80293319-80293338 | None:intergenic | 35.0% | |
| ACAAAACAGTTGGAAATCTG+GGG | - | chr1.2:80292209-80292228 | None:intergenic | 35.0% | |
| ACTGAATTGGCACTGTTATA+GGG | + | chr1.2:80292677-80292696 | MS.gene92989:intron | 35.0% | |
| AGTACATCACAGTAGTAGTA+TGG | - | chr1.2:80294230-80294249 | None:intergenic | 35.0% | |
| ATACCACAGTACACATGAAA+GGG | - | chr1.2:80293769-80293788 | None:intergenic | 35.0% | |
| ATATGTTATACTGTACGAGG+AGG | + | chr1.2:80292354-80292373 | MS.gene92989:intron | 35.0% | |
| ATATTGTGCACATTACCTGT+CGG | - | chr1.2:80292648-80292667 | None:intergenic | 35.0% | |
| ATCAAGGTCTATTTGAACAG+TGG | - | chr1.2:80293052-80293071 | None:intergenic | 35.0% | |
| ATCAGCAGAGTAGTTTGAAT+TGG | - | chr1.2:80292747-80292766 | None:intergenic | 35.0% | |
| ATGTTACTCTCCAATAAACC+TGG | + | chr1.2:80294572-80294591 | MS.gene92989:intron | 35.0% | |
| ATTTGGAAAAACTAGAAGGC+TGG | + | chr1.2:80292494-80292513 | MS.gene92989:intron | 35.0% | |
| CACAAAACAGTTGGAAATCT+GGG | - | chr1.2:80292210-80292229 | None:intergenic | 35.0% | |
| CATTTCAGAGTTATTAGCGA+TGG | - | chr1.2:80291314-80291333 | None:intergenic | 35.0% | |
| CTAAAACACAACGGCATATT+CGG | - | chr1.2:80293617-80293636 | None:intergenic | 35.0% | |
| CTAACTACTCCAAATACTTC+AGG | + | chr1.2:80295375-80295394 | MS.gene92989:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr1.2:80292185-80292204 | None:intergenic | 35.0% | |
| CTCAATTCTCAAGGTCTTTA+GGG | + | chr1.2:80294542-80294561 | MS.gene92989:intron | 35.0% | |
| CTGAGTTAGAATCAACTCTT+AGG | - | chr1.2:80294813-80294832 | None:intergenic | 35.0% | |
| GAACATCAACTAATAGAGCA+GGG | - | chr1.2:80291548-80291567 | None:intergenic | 35.0% | |
| GAAGATGAAACAAACCATTG+AGG | - | chr1.2:80291438-80291457 | None:intergenic | 35.0% | |
| GATCTTATCGAGCATATAAG+TGG | - | chr1.2:80293078-80293097 | None:intergenic | 35.0% | |
| GCTACTTATCGTGAACAATA+TGG | - | chr1.2:80292956-80292975 | None:intergenic | 35.0% | |
| GTCATAAAAGGAGAAGATCA+AGG | - | chr1.2:80294208-80294227 | None:intergenic | 35.0% | |
| GTTTAGTGTCACAAAACAGT+TGG | - | chr1.2:80292219-80292238 | None:intergenic | 35.0% | |
| TAAAACACAACGGCATATTC+GGG | - | chr1.2:80293616-80293635 | None:intergenic | 35.0% | |
| TAAATACTTGCGAGACTGTT+TGG | + | chr1.2:80291679-80291698 | MS.gene92989:intron | 35.0% | |
| TATACCACAGTACACATGAA+AGG | - | chr1.2:80293770-80293789 | None:intergenic | 35.0% | |
| TATAGGGAGAATCACAACTA+GGG | + | chr1.2:80292693-80292712 | MS.gene92989:intron | 35.0% | |
| TCACAAAACAGTTGGAAATC+TGG | - | chr1.2:80292211-80292230 | None:intergenic | 35.0% | |
| TCTCAATTCTCAAGGTCTTT+AGG | + | chr1.2:80294541-80294560 | MS.gene92989:intron | 35.0% | |
| TGAAAATTCCGCCTTAATTG+TGG | + | chr1.2:80292021-80292040 | MS.gene92989:intron | 35.0% | |
| TGTTACTCTCCAATAAACCT+GGG | + | chr1.2:80294573-80294592 | MS.gene92989:intron | 35.0% | |
| TTACAAGAGATTCCCTATAG+CGG | - | chr1.2:80293590-80293609 | None:intergenic | 35.0% | |
| TTATAGGGAGAATCACAACT+AGG | + | chr1.2:80292692-80292711 | MS.gene92989:intron | 35.0% | |
| TTCGACCTTCAATTATCCAA+AGG | - | chr1.2:80295298-80295317 | None:intergenic | 35.0% | |
| ! | AGTGATGTCTTTTGTTCCTT+TGG | + | chr1.2:80295279-80295298 | MS.gene92989:intron | 35.0% |
| ! | ATTCTTTGTACTGGTGTCAA+TGG | + | chr1.2:80292930-80292949 | MS.gene92989:intron | 35.0% |
| ! | CTAAGAGTTGATTCTAACTC+AGG | + | chr1.2:80294811-80294830 | MS.gene92989:intron | 35.0% |
| ! | CTGATTTTTGTTGGACTCTT+TGG | + | chr1.2:80293646-80293665 | MS.gene92989:intron | 35.0% |
| ! | CTTCCAAAAAGCATGAAGAA+CGG | + | chr1.2:80291286-80291305 | MS.gene92989:CDS | 35.0% |
| ! | GAATGCTTTCCTGAAGTATT+TGG | - | chr1.2:80295387-80295406 | None:intergenic | 35.0% |
| ! | TTCCCTAAACTTTGACTTAG+CGG | + | chr1.2:80293804-80293823 | MS.gene92989:intron | 35.0% |
| !! | AAGCTTGTTGAACTATTAGG+CGG | + | chr1.2:80293160-80293179 | MS.gene92989:intron | 35.0% |
| !! | AATTAATATGGGGGTGTTTC+TGG | + | chr1.2:80291992-80292011 | MS.gene92989:intron | 35.0% |
| !! | AGCATATAAGTGGACTATCA+AGG | - | chr1.2:80293068-80293087 | None:intergenic | 35.0% |
| !! | AGTTCATGTCATGTTGATTC+TGG | - | chr1.2:80295357-80295376 | None:intergenic | 35.0% |
| !! | ATTGGTCTTTGGTAAATTCC+TGG | - | chr1.2:80292826-80292845 | None:intergenic | 35.0% |
| !! | CCCTGTCTTTTAAAAACACA+AGG | - | chr1.2:80294425-80294444 | None:intergenic | 35.0% |
| !! | CTGAAGCTTGTTGAACTATT+AGG | + | chr1.2:80293157-80293176 | MS.gene92989:intron | 35.0% |
| !! | CTTCATTGCATTAGCTTTGA+GGG | + | chr1.2:80292081-80292100 | MS.gene92989:intron | 35.0% |
| !! | TTCATTGCATTAGCTTTGAG+GGG | + | chr1.2:80292082-80292101 | MS.gene92989:intron | 35.0% |
| AACGTGTGTGTTTGGTTATG+CGG | - | chr1.2:80294993-80295012 | None:intergenic | 40.0% | |
| AATATCTCTGTGGTCAGTAG+TGG | - | chr1.2:80293888-80293907 | None:intergenic | 40.0% | |
| ACATGAGTACCAGTATGAGT+TGG | - | chr1.2:80291343-80291362 | None:intergenic | 40.0% | |
| ACCTGTCGGTATTCAATGTT+CGG | - | chr1.2:80292634-80292653 | None:intergenic | 40.0% | |
| AGCCGCTAAGTCAAAGTTTA+GGG | - | chr1.2:80293809-80293828 | None:intergenic | 40.0% | |
| AGCTATCCCTATGATGTTCA+TGG | - | chr1.2:80294723-80294742 | None:intergenic | 40.0% | |
| ATCTCAGTGCTTGGTTGATT+TGG | + | chr1.2:80295164-80295183 | MS.gene92989:intron | 40.0% | |
| ATGAAGCTTCCAACTCATAC+TGG | + | chr1.2:80291331-80291350 | MS.gene92989:CDS | 40.0% | |
| ATGTCACTACTTGCACTTCA+TGG | - | chr1.2:80292803-80292822 | None:intergenic | 40.0% | |
| CCATCTTTAGTCTCAAAAGC+TGG | - | chr1.2:80291247-80291266 | None:intergenic | 40.0% | |
| CCTCAAAGCTAATGCAATGA+AGG | - | chr1.2:80292083-80292102 | None:intergenic | 40.0% | |
| CTTGATAAGAGTTTGCGAAG+AGG | + | chr1.2:80292138-80292157 | MS.gene92989:intron | 40.0% | |
| GGAACATCAACTAATAGAGC+AGG | - | chr1.2:80291549-80291568 | None:intergenic | 40.0% | |
| GGACTGAATATAATCCTGCT+GGG | - | chr1.2:80295438-80295457 | None:intergenic | 40.0% | |
| GTAATCAATAGCAGTCGTAG+CGG | + | chr1.2:80293466-80293485 | MS.gene92989:intron | 40.0% | |
| GTAGCATATTAAAGTTGGGG+TGG | + | chr1.2:80292979-80292998 | MS.gene92989:intron | 40.0% | |
| GTATCTACAACGTGTGTGTT+TGG | - | chr1.2:80295001-80295020 | None:intergenic | 40.0% | |
| TAATGATCGAAGACATGTCC+AGG | - | chr1.2:80291373-80291392 | None:intergenic | 40.0% | |
| TGGACTGAATATAATCCTGC+TGG | - | chr1.2:80295439-80295458 | None:intergenic | 40.0% | |
| TTCGATCATTACTTCGATGC+TGG | + | chr1.2:80291382-80291401 | MS.gene92989:CDS | 40.0% | |
| ! | AGAGTCTTATCTAACCGATG+TGG | - | chr1.2:80292120-80292139 | None:intergenic | 40.0% |
| ! | CTACATGTATGAAGCACCTA+TGG | - | chr1.2:80293410-80293429 | None:intergenic | 40.0% |
| ! | GAACCGTTCTTCATGCTTTT+TGG | - | chr1.2:80291292-80291311 | None:intergenic | 40.0% |
| ! | GAATTTGACTCGAGCTATGT+GGG | + | chr1.2:80293198-80293217 | MS.gene92989:CDS | 40.0% |
| ! | GAGTCTTATCTAACCGATGT+GGG | - | chr1.2:80292119-80292138 | None:intergenic | 40.0% |
| !! | ATGGTATCGGTCAATTCTTG+TGG | + | chr1.2:80291263-80291282 | MS.gene92989:CDS | 40.0% |
| !! | CCTTCATTGCATTAGCTTTG+AGG | + | chr1.2:80292080-80292099 | MS.gene92989:intron | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr1.2:80292183-80292202 | MS.gene92989:intron | 40.0% |
| !! | TCATTGCATTAGCTTTGAGG+GGG | + | chr1.2:80292083-80292102 | MS.gene92989:intron | 40.0% |
| !!! | CCAGCTTTTGAGACTAAAGA+TGG | + | chr1.2:80291244-80291263 | MS.gene92989:CDS | 40.0% |
| AAGTGCAAGTAGTGACATCC+AGG | + | chr1.2:80292805-80292824 | MS.gene92989:intron | 45.0% | |
| ACTAGGGCACACCACAATTA+AGG | - | chr1.2:80292035-80292054 | None:intergenic | 45.0% | |
| AGTACACGCTTTACACCTCT+GGG | - | chr1.2:80292608-80292627 | None:intergenic | 45.0% | |
| ATAACCTTATCCCTCCTCGT+CGG | + | chr1.2:80291164-80291183 | MS.gene92989:CDS | 45.0% | |
| ATGCAATGAAGGCAAACCAG+AGG | - | chr1.2:80292072-80292091 | None:intergenic | 45.0% | |
| CAAACCAGAGGCTGCAATTT+AGG | - | chr1.2:80292060-80292079 | None:intergenic | 45.0% | |
| CAGCCGCTAAGTCAAAGTTT+AGG | - | chr1.2:80293810-80293829 | None:intergenic | 45.0% | |
| CAGTCCATTGCTTACCTCTT+AGG | + | chr1.2:80295452-80295471 | MS.gene92989:CDS | 45.0% | |
| CCAACCTAAGAGGTAAGCAA+TGG | - | chr1.2:80295459-80295478 | None:intergenic | 45.0% | |
| CCATTGCTTACCTCTTAGGT+TGG | + | chr1.2:80295456-80295475 | MS.gene92989:CDS | 45.0% | |
| CTAGACACGGTCACAAATGT+CGG | - | chr1.2:80293334-80293353 | None:intergenic | 45.0% | |
| CTGGGACATCATCAAGTTTC+AGG | - | chr1.2:80295420-80295439 | None:intergenic | 45.0% | |
| CTTATGAATAGTGGCTGCAG+CGG | + | chr1.2:80293544-80293563 | MS.gene92989:intron | 45.0% | |
| GATAAGAGTTTGCGAAGAGG+AGG | + | chr1.2:80292141-80292160 | MS.gene92989:intron | 45.0% | |
| GCACATCAAATCTCAGTGCT+TGG | + | chr1.2:80295155-80295174 | MS.gene92989:intron | 45.0% | |
| GGTGGTTACAATCTCCGTAA+CGG | + | chr1.2:80291126-80291145 | MS.gene92989:CDS | 45.0% | |
| TACGGAGATTGTAACCACCA+AGG | - | chr1.2:80291125-80291144 | None:intergenic | 45.0% | |
| TAGCCCTTTCATGTGTACTG+TGG | + | chr1.2:80293763-80293782 | MS.gene92989:intron | 45.0% | |
| TAGGCGGCTTATGTTTCAGA+AGG | + | chr1.2:80293176-80293195 | MS.gene92989:intron | 45.0% | |
| TATGTGGGATTCACTGTGGA+TGG | + | chr1.2:80293213-80293232 | MS.gene92989:CDS | 45.0% | |
| TCCGAACATTGAATACCGAC+AGG | + | chr1.2:80292630-80292649 | MS.gene92989:CDS | 45.0% | |
| ! | GGAATTTGACTCGAGCTATG+TGG | + | chr1.2:80293197-80293216 | MS.gene92989:CDS | 45.0% |
| ! | GTATGAAGCACCTATGGAGT+CGG | - | chr1.2:80293404-80293423 | None:intergenic | 45.0% |
| !! | AAACTTGATGATGTCCCAGC+AGG | + | chr1.2:80295421-80295440 | MS.gene92989:CDS | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr1.2:80292176-80292195 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr1.2:80292173-80292192 | MS.gene92989:intron | 45.0% |
| !! | TCTGTGGTCAGTAGTGGATA+GGG | - | chr1.2:80293882-80293901 | None:intergenic | 45.0% |
| AGGCTGCAATTTAGGCGACT+AGG | - | chr1.2:80292052-80292071 | None:intergenic | 50.0% | |
| AGGGCACACCACAATTAAGG+CGG | - | chr1.2:80292032-80292051 | None:intergenic | 50.0% | |
| CCAAAGCTCCCAGTTGTGTA+TGG | - | chr1.2:80294675-80294694 | None:intergenic | 50.0% | |
| CCATACACAACTGGGAGCTT+TGG | + | chr1.2:80294672-80294691 | MS.gene92989:intron | 50.0% | |
| GAGAAGATCAAGGTGCAGAG+TGG | - | chr1.2:80294198-80294217 | None:intergenic | 50.0% | |
| GAGCTATGTGGGATTCACTG+TGG | + | chr1.2:80293209-80293228 | MS.gene92989:CDS | 50.0% | |
| GAGTACACGCTTTACACCTC+TGG | - | chr1.2:80292609-80292628 | None:intergenic | 50.0% | |
| GGCTGCAATTTAGGCGACTA+GGG | - | chr1.2:80292051-80292070 | None:intergenic | 50.0% | |
| GGTACTCATGTTGATGCTCC+TGG | + | chr1.2:80291352-80291371 | MS.gene92989:CDS | 50.0% | |
| GGTTACAATCTCCGTAACGG+CGG | + | chr1.2:80291129-80291148 | MS.gene92989:CDS | 50.0% | |
| GTCTCAAAAGCTGGCATGTC+TGG | - | chr1.2:80291238-80291257 | None:intergenic | 50.0% | |
| TAACCTTATCCCTCCTCGTC+GGG | + | chr1.2:80291165-80291184 | MS.gene92989:CDS | 50.0% | |
| TTGTCGTATACTTCCCGACG+AGG | - | chr1.2:80291181-80291200 | None:intergenic | 50.0% | |
| ! | CGTCGGGAAGTATACGACAA+TGG | + | chr1.2:80291181-80291200 | MS.gene92989:CDS | 50.0% |
| ! | GCGCTTATGTGCCACTATAG+CGG | - | chr1.2:80293500-80293519 | None:intergenic | 50.0% |
| ! | GGGTGGATTTAGTCCCACAT+CGG | + | chr1.2:80292103-80292122 | MS.gene92989:intron | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr1.2:80292171-80292190 | None:intergenic | 50.0% |
| !! | CTCTGTGGTCAGTAGTGGAT+AGG | - | chr1.2:80293883-80293902 | None:intergenic | 50.0% |
| !! | TGCTTACCTCTTAGGTTGGC+TGG | + | chr1.2:80295460-80295479 | MS.gene92989:CDS | 50.0% |
| !! | TGGCTGCAGCGGACTAATAA+CGG | + | chr1.2:80293555-80293574 | MS.gene92989:intron | 50.0% |
| !! | TTGCATTAGCTTTGAGGGGG+TGG | + | chr1.2:80292086-80292105 | MS.gene92989:intron | 50.0% |
| !! | TTTCTGGACACCGACTCCAT+AGG | + | chr1.2:80293391-80293410 | MS.gene92989:intron | 50.0% |
| ACGGCTGTAGTTGCCGCTAT+AGG | + | chr1.2:80293574-80293593 | MS.gene92989:intron | 55.0% | |
| ATCTCCGTAACGGCGGTGAA+CGG | + | chr1.2:80291136-80291155 | MS.gene92989:CDS | 55.0% | |
| CCTGCTACGCTATAGCGCTT+TGG | + | chr1.2:80293838-80293857 | MS.gene92989:intron | 55.0% | |
| CGGCTGTAGTTGCCGCTATA+GGG | + | chr1.2:80293575-80293594 | MS.gene92989:intron | 55.0% | |
| CGTATACTTCCCGACGAGGA+GGG | - | chr1.2:80291177-80291196 | None:intergenic | 55.0% | |
| GCACTCCTCACCTTACAAGC+CGG | + | chr1.2:80292163-80292182 | MS.gene92989:intron | 55.0% | |
| GCTACGCTATAGCGCTTTGG+CGG | + | chr1.2:80293841-80293860 | MS.gene92989:intron | 55.0% | |
| GTCGCCTAAATTGCAGCCTC+TGG | + | chr1.2:80292053-80292072 | MS.gene92989:intron | 55.0% | |
| TCACTGTGGATGGCGCAAAG+TGG | + | chr1.2:80293223-80293242 | MS.gene92989:CDS | 55.0% | |
| TCAGCACCAGCCAACCTAAG+AGG | - | chr1.2:80295469-80295488 | None:intergenic | 55.0% | |
| TCGTATACTTCCCGACGAGG+AGG | - | chr1.2:80291178-80291197 | None:intergenic | 55.0% | |
| ! | AGCGGTAGTAGCGTTAGCCT+TGG | + | chr1.2:80291105-80291124 | MS.gene92989:CDS | 55.0% |
| ! | CCAAAGCGCTATAGCGTAGC+AGG | - | chr1.2:80293841-80293860 | None:intergenic | 55.0% |
| ! | CTCGACTTGCACGTCCTCAA+TGG | + | chr1.2:80291421-80291440 | MS.gene92989:CDS | 55.0% |
| ! | TAGTGGATAGGGCTGTGTGG+CGG | - | chr1.2:80293871-80293890 | None:intergenic | 55.0% |
| !! | CAGTAGTGGATAGGGCTGTG+TGG | - | chr1.2:80293874-80293893 | None:intergenic | 55.0% |
| !! | CTTAGGTTGGCTGGTGCTGA+GGG | + | chr1.2:80295469-80295488 | MS.gene92989:CDS | 55.0% |
| !! | GGTAGTAGCGTTAGCCTTGG+TGG | + | chr1.2:80291108-80291127 | MS.gene92989:CDS | 55.0% |
| !! | TAGCAGTCGTAGCGGACTAG+CGG | + | chr1.2:80293474-80293493 | MS.gene92989:intron | 55.0% |
| !! | TCTTAGGTTGGCTGGTGCTG+AGG | + | chr1.2:80295468-80295487 | MS.gene92989:CDS | 55.0% |
| CGCTATAGCGCTTTGGCGGT+CGG | + | chr1.2:80293845-80293864 | MS.gene92989:intron | 60.0% | |
| CTTCCCGACGAGGAGGGATA+AGG | - | chr1.2:80291171-80291190 | None:intergenic | 60.0% | |
| GGATGGCGCAAAGTGGCTAG+TGG | + | chr1.2:80293230-80293249 | MS.gene92989:CDS | 60.0% | |
| GTCGCCGTTCACCGCCGTTA+CGG | - | chr1.2:80291143-80291162 | None:intergenic | 65.0% | |
| !! | CGGACTAGCGGCCGCTATAG+TGG | + | chr1.2:80293486-80293505 | MS.gene92989:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 80291094 | 80295525 | 80291094 | ID=MS.gene92989 |
| chr1.2 | mRNA | 80291094 | 80295525 | 80291094 | ID=MS.gene92989.t1;Parent=MS.gene92989 |
| chr1.2 | exon | 80291094 | 80291442 | 80291094 | ID=MS.gene92989.t1.exon1;Parent=MS.gene92989.t1 |
| chr1.2 | CDS | 80291094 | 80291442 | 80291094 | ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1 |
| chr1.2 | exon | 80291544 | 80291588 | 80291544 | ID=MS.gene92989.t1.exon2;Parent=MS.gene92989.t1 |
| chr1.2 | CDS | 80291544 | 80291588 | 80291544 | ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1 |
| chr1.2 | exon | 80292579 | 80292651 | 80292579 | ID=MS.gene92989.t1.exon3;Parent=MS.gene92989.t1 |
| chr1.2 | CDS | 80292579 | 80292651 | 80292579 | ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1 |
| chr1.2 | exon | 80293179 | 80293276 | 80293179 | ID=MS.gene92989.t1.exon4;Parent=MS.gene92989.t1 |
| chr1.2 | CDS | 80293179 | 80293276 | 80293179 | ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1 |
| chr1.2 | exon | 80294373 | 80294443 | 80294373 | ID=MS.gene92989.t1.exon5;Parent=MS.gene92989.t1 |
| chr1.2 | CDS | 80294373 | 80294443 | 80294373 | ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1 |
| chr1.2 | exon | 80295397 | 80295525 | 80295397 | ID=MS.gene92989.t1.exon6;Parent=MS.gene92989.t1 |
| chr1.2 | CDS | 80295397 | 80295525 | 80295397 | ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1 |
| Gene Sequence |
| Protein sequence |
