AlfalfaGEDB | MS.gene92989

M. sativa cultivar XinJiangDaYe / MS.gene92989

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004061 GO:0006082 GO:0006520 GO:0006568 GO:0006569 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009987 GO:0016054 GO:0016787 GO:0016810 GO:0016811 GO:0019439 GO:0019441 GO:0019752 GO:0034641 GO:0042180 GO:0042402 GO:0042430 GO:0042436 GO:0042537 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0046218 GO:0046395 GO:0046483 GO:0046700 GO:0070189 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606
PFAM: PF04199.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92989.t1	XP_013470086.1	98.8	254	3	0	1	254	1	254	2.20E-141	511.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92989.t1	Q94JT5	81.2	229	43	0	24	252	43	271	3.0e-107	389.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92989.t1	I3SIK3	98.8	254	3	0	1	254	1	254	1.6e-141	511.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene92989	0.886421	3.47E-72	-1.69E-46
MS.gene049173	MS.gene92989	0.814992	1.16E-51	-1.69E-46
MS.gene049217	MS.gene92989	0.81119	7.92E-51	-1.69E-46
MS.gene049222	MS.gene92989	0.890529	9.07E-74	-1.69E-46
MS.gene049232	MS.gene92989	0.844086	9.40E-59	-1.69E-46
MS.gene049285	MS.gene92989	0.880007	7.82E-70	-1.69E-46
MS.gene049320	MS.gene92989	0.861034	1.36E-63	-1.69E-46
MS.gene049609	MS.gene92989	0.849981	2.28E-60	-1.69E-46
MS.gene049633	MS.gene92989	0.869909	2.17E-66	-1.69E-46
MS.gene049805	MS.gene92989	0.801651	8.14E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92989.t1	MTR_1g107525	98.819	254	3	0	1	254	1	254	0.0	516
MS.gene92989.t1	MTR_1g107525	99.471	189	1	0	1	189	1	189	4.64e-139	389
MS.gene92989.t1	MTR_1g107510	73.305	236	62	1	18	252	34	269	9.67e-124	353
MS.gene92989.t1	MTR_1g107510	74.419	172	43	1	19	189	35	206	5.48e-88	260

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92989.t1	AT4G35220	81.223	229	43	0	24	252	43	271	1.85e-139	393
MS.gene92989.t1	AT4G34180	69.697	231	69	1	24	253	25	255	3.03e-117	336
MS.gene92989.t1	AT1G44542	68.722	227	70	1	28	253	45	271	8.34e-115	330

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Find 59 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGATGATGTCCCAGC+AGG	0.554591	1.2:+80295421	MS.gene92989:CDS
AAATCTTCGATATCACTCAC+AGG	0.611969	1.2:+80291206	MS.gene92989:CDS
AACACTGATATTAAACTTGT+TGG	0.407040	1.2:+80293255	MS.gene92989:CDS
AAGTCATTAAATATTCCCAG+AGG	0.764509	1.2:+80292590	MS.gene92989:CDS
AATCATAAGAAGCAACAGAT+AGG	0.460354	1.2:-80294383	None:intergenic
ACATGAGTACCAGTATGAGT+TGG	0.596387	1.2:-80291340	None:intergenic
ACCTGTCGGTATTCAATGTT+CGG	0.395211	1.2:-80292631	None:intergenic
AGCGGTAGTAGCGTTAGCCT+TGG	0.620390	1.2:+80291105	MS.gene92989:CDS
AGTACACGCTTTACACCTCT+GGG	0.579818	1.2:-80292605	None:intergenic
ATAACCTTATCCCTCCTCGT+CGG	0.627407	1.2:+80291164	MS.gene92989:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTCGGAATAAATGTCA+CGG	-	chr1.2:80293320-80293339	None:intergenic	30.0%
AAGAAAAATCCCAGGTTTAT+TGG	-	chr1.2:80294585-80294604	None:intergenic	30.0%
AAGTCATTAAATATTCCCAG+AGG	+	chr1.2:80292590-80292609	MS.gene92989:CDS	30.0%
AATCATAAGAAGCAACAGAT+AGG	-	chr1.2:80294386-80294405	None:intergenic	30.0%
ACAAGCTTCAGTTTCTAATT+AGG	-	chr1.2:80293148-80293167	None:intergenic	30.0%
ACACTTACCAATTTGACAAT+TGG	-	chr1.2:80295069-80295088	None:intergenic	30.0%
ACCTACTTTCACACTTATTA+AGG	+	chr1.2:80291864-80291883	MS.gene92989:intron	30.0%
AGTAGTAGTATGGTCATAAA+AGG	-	chr1.2:80294220-80294239	None:intergenic	30.0%
AGTTGAGACAAACACATAAT+TGG	-	chr1.2:80292844-80292863	None:intergenic	30.0%
ATTCATAAGTGCAACTAATC+AGG	-	chr1.2:80293533-80293552	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	80291094	80295525	80291094	ID=MS.gene92989
chr1.2	mRNA	80291094	80295525	80291094	ID=MS.gene92989.t1;Parent=MS.gene92989
chr1.2	exon	80291094	80291442	80291094	ID=MS.gene92989.t1.exon1;Parent=MS.gene92989.t1
chr1.2	CDS	80291094	80291442	80291094	ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1
chr1.2	exon	80291544	80291588	80291544	ID=MS.gene92989.t1.exon2;Parent=MS.gene92989.t1
chr1.2	CDS	80291544	80291588	80291544	ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1
chr1.2	exon	80292579	80292651	80292579	ID=MS.gene92989.t1.exon3;Parent=MS.gene92989.t1
chr1.2	CDS	80292579	80292651	80292579	ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1
chr1.2	exon	80293179	80293276	80293179	ID=MS.gene92989.t1.exon4;Parent=MS.gene92989.t1
chr1.2	CDS	80293179	80293276	80293179	ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1
chr1.2	exon	80294373	80294443	80294373	ID=MS.gene92989.t1.exon5;Parent=MS.gene92989.t1
chr1.2	CDS	80294373	80294443	80294373	ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1
chr1.2	exon	80295397	80295525	80295397	ID=MS.gene92989.t1.exon6;Parent=MS.gene92989.t1
chr1.2	CDS	80295397	80295525	80295397	ID=cds.MS.gene92989.t1;Parent=MS.gene92989.t1

Gene Sequence

>MS.gene92989

ATGAAGTATCAAGCGGTAGTAGCGTTAGCCTTGGTGGTTACAATCTCCGTAACGGCGGTGAACGGCGACGATAACCTTATCCCTCCTCGTCGGGAAGTATACGACAATGGAAAAATCTTCGATATCACTCACAGGTATCAACCAGACATGCCAGCTTTTGAGACTAAAGATGGTATCGGTCAATTCTTGTGGCTTCCAAAAAGCATGAAGAACGGTTCCATCGCTAATAACTCTGAAATGAAGCTTCCAACTCATACTGGTACTCATGTTGATGCTCCTGGACATGTCTTCGATCATTACTTCGATGCTGGATTCGATGTCGATTCTCTCGACTTGCACGTCCTCAATGGTTTGTTTCATCTTCTTTTCTATTCTTCTTTTTATTTGTGTTTTATTTTGATTATTGTTATTAAGCTTTTTTTCTTTGTTTGTTTATGTGATATTTTGCAGGCCCTGCTCTATTAGTTGATGTTCCAAGAGATTCTAATATAACTGGTATGCTATGCATATTATATTTATAGCTTCTGATAATTTTTTTGGTTTAATTTCATATTTAGGACATGTTTTGATTGGTTTTTGTAGATATAAATACTTGCGAGACTGTTTGGAAGAGCTTACCAACATAACTTATTTCTATAAGCTCTTTAGAATAGCTTATGAAATCAGTTTCTAGCTTATATGAAAATAGTTTGACTTTATTTTATCTTTGGTAATAGAAATAAGTTATACATAAACAATTACTCATTCTGGACTCAAATATAAGCAAAAATACCTACTTTCACACTTATTAAGGATGACGGTTAAACTCATTTAACTTTCTTGATAATTTTATGTAAAACAGAAAACACATTTAGTAGTCTACCCCTAATTATAATGATCATCTTCTCACAACATTAATAATTAATATGGGGGTGTTTCTGGAATTGTTGAAAATTCCGCCTTAATTGTGGTGTGCCCTAGTCGCCTAAATTGCAGCCTCTGGTTTGCCTTCATTGCATTAGCTTTGAGGGGGTGGATTTAGTCCCACATCGGTTAGATAAGACTCTTGATAAGAGTTTGCGAAGAGGAGGCACTCCTCACCTTACAAGCCGGTTTTGTAAGGATGAGTTAGGCCCCAGATTTCCAACTGTTTTGTGACACTAAACATGCATAGAATAGATAACTTTTGCTTATATTTGAGTCCAATGCATTTATGTACATTTTTGCTTATAATTTAGGCCTAAGTAGTATATGATAAACACTTATGCCAGAATTGATTAAATATGTTATACTGTACGAGGAGGATCAAATATTGTAGTCCATAGAAAACTTTCAAAGAATTTGCCTATTTTAATCAAACTTTCTCATAGTCCCAAATTTCAGTGTCTTTTATACTTATAATAAAATCAATTGTTATTTTGATTTGGAAAAACTAGAAGGCTGGATTTACTACTTCTATTTGTTCTTAACTGTTGATCAAATGAAAATTGTACTTTTCTTTTCCAGCTGAAGTTATGAAGTCATTAAATATTCCCAGAGGTGTAAAGCGTGTACTCTTCCGAACATTGAATACCGACAGGTAATGTGCACAATATCACAAGTTAACTGAATTGGCACTGTTATAGGGAGAATCACAACTAGGGAGAATCACAACATTTTGTTAGCACTAGACCAATTCAAACTACTCTGCTGATAGTTACAGATTTCATAAAAGTTTAAGTAAACATCCATGAAGTGCAAGTAGTGACATCCAGGAATTTACCAAAGACCAATTATGTGTTTGTCTCAACTACTTTTGACTCTTCTTTTCATTTCAATTCCTGTATGTGTTATCTGAATGTAGATAATTGTATTCATATTCTTTGTACTGGTGTCAATGGCCATATTGTTCACGATAAGTAGCAATGTAGCATATTAAAGTTGGGGTGGATGTAAAGCAAAAGAAACATTTAATTATGATTTATGGGTTTTATTCACCACTGTTCAAATAGACCTTGATAGTCCACTTATATGCTCGATAAGATCTTGATTTTTTTTTTTCATAATCTTTTAACTTCATATCTCATTTGAAGCCTAATTAGAAACTGAAGCTTGTTGAACTATTAGGCGGCTTATGTTTCAGAAGGAATTTGACTCGAGCTATGTGGGATTCACTGTGGATGGCGCAAAGTGGCTAGTGGAGAACACTGATATTAAACTTGTTGGTAGGCATAAATTGTTTTTCTATTTTTCAGCTACTTTTACCCGTGACATTTATTCCGACATTTGTGACCGTGTCTAGTTTTGCATTTGTAGATTGCTTCACTTTATACATTGTTTTTCTGGACACCGACTCCATAGGTGCTTCATACATGTAGTGCAATATTTATTAGATGAAGATAATATTTGGCTCTGTAATCAATAGCAGTCGTAGCGGACTAGCGGCCGCTATAGTGGCACATAAGCGCTATGCAAAATCCTGATTAGTTGCACTTATGAATAGTGGCTGCAGCGGACTAATAACGGCTGTAGTTGCCGCTATAGGGAATCTCTTGTAAAAACCCGAATATGCCGTTGTGTTTTAGATGTTCTCTCTGATTTTTGTTGGACTCTTTGGTTATTTCACTGTAAAACTCATTTGCTTTATACCGAGTTTAAAACTTCAATTCCTAGTTATAAATATCTTCAATTTTGTGTATTGATCTATTTTTTAGCCCTTTCATGTGTACTGTGGTATAAATTTCTGTACCGTTTCCCTAAACTTTGACTTAGCGGCTGTACTACTACCTGCTACGCTATAGCGCTTTGGCGGTCGGCCGCCACACAGCCCTATCCACTACTGACCACAGAGATATTAAATTTTATGTGCTCTTCAATTGAATGAGTTGAATAGGCATAATTTTATTTTCTTGGTGAACATAGGCAGCATTTTTTTACTTTTGTGAATAACTACTGATCTCATCTTTATGATACCTCTCTCTATTCCATTATTTATTTGCAACTTGGAACATAGAGTTGCTAGTAGTTCGTACAATAAAACTGTAGAAGAGTTATTCTAAATCTTATTAGGTAACTGGCTGTTTCACCATTTCATTTTTTATTGGATTCAAGATTATAATGGCTAGTGATGTAGTTTCATAAGACCACTCTGCACCTTGATCTTCTCCTTTTATGACCATACTACTACTGTGATGTACTACTTTTCTCATCTTCAATGTTGTTTAGTTGAGAGATATCGCACCCCAATTTTTTTCTCTTTCAATTCTTAACATTTTTTTGGCTCAATTTTGCTGGCTGACTTATTTATGTGATGTCATGTAGGTATTGATTACCTATCTGTTGCTTCTTATGATTACTTGATTCCATCTCACCTTGTGTTTTTAAAAGACAGGGTAAGAAAGAGTCTCTTATTTCTGAGAACTGACGTTTTTTGTTTTACTTTTAGTTAGCTGATTATTCCCTACCCTTTTTGACTTAAAACTAATTGCATCTCAATTCTCAAGGTCTTTAGGGTCAACATATGTTACTCTCCAATAAACCTGGGATTTTTCTTTGTTAATCTTGCTAAGTAATTTTCACTTTTCAGTGTTGGTATCATTTGTTTTGGTGTTTTTAATGTTCCATACACAACTGGGAGCTTTGGTTTTCATCAGTTGTGATTTTTGTAACCATGAACATCATAGGGATAGCTAAAAGTGATTCTCAACACAAAAATTGATTTTGATGTATTTAGGTGATGTTGATTGAAATTAATTTTGCCTAAGAGTTGATTCTAACTCAGGATTTGTAGCTTTTGACTCCAAATGTGATTTTTACACTCAAATTTATTGTTGAACTCACGTTTATGTGAATATATCCGAACATAAACCACTTAACATTCAACTCACTTTTATCTACAGTCTATTTTACAAAATAAATACGAATAAAATCAATTTTTACCGCATAACCAAACACACACGTTGTAGATACTAGCTCTCTCTTTGTCATGCTCAACACATACTTGTACTATCATATCCAATTGTCAAATTGGTAAGTGTATACTTCTGATAGCATACTACTTGACTGTTTTGATGAGATACCAGTTCATTGATGTTTTGTTTGCTGCACATCAAATCTCAGTGCTTGGTTGATTTGGTGTGTGTTATTCTGATAAAATATTAAACTTGATAGTTTGAAAGATATTTTCGAATTTGTTGGTAAACATGTGCAATTTTAAACGAGCATGCTAGTGATGTCTTTTGTTCCTTTGGATAATTGAAGGTCGAATGTCAAAATTTGCTTAATTTGTTGCTTGAATAAGTACCAGAATCAACATGACATGAACTAACTACTCCAAATACTTCAGGAAAGCATTCTCGTCGAAAGCCTGAAACTTGATGATGTCCCAGCAGGATTATATTCAGTCCATTGCTTACCTCTTAGGTTGGCTGGTGCTGAGGGATCACCAATACGATGCATTCTAATCAAGTATTAG

Protein sequence

>MS.gene92989.t1

MKYQAVVALALVVTISVTAVNGDDNLIPPRREVYDNGKIFDITHRYQPDMPAFETKDGIGQFLWLPKSMKNGSIANNSEMKLPTHTGTHVDAPGHVFDHYFDAGFDVDSLDLHVLNGPALLVDVPRDSNITAEVMKSLNIPRGVKRVLFRTLNTDRRLMFQKEFDSSYVGFTVDGAKWLVENTDIKLVGIDYLSVASYDYLIPSHLVFLKDRESILVESLKLDDVPAGLYSVHCLPLRLAGAEGSPIRCILIKY