AlfalfaGEDB | MsG0180001919.01

M. sativa cultivar ZhongmuNo.1 / MsG0180001919.01

KEGG: K02724
GO: GO:0009523 GO:0009539 GO:0015979 GO:0042549
PFAM: PF01737

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001919.01.T01	YP_001381733.1	100	62	0	0	1	62	1	62	3.69E-32	115

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001919.01.T01	Q32902	98.387	62	1	0	1	62	1	62	3.14E-34	113

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001919.01.T01	A0A0K0LU79	100.000	62	0	0	1	62	1	62	1.76e-32	115

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047967.01	MsG0180001919.01	0.802757	4.820394e-49	2.380621e-46
MsG0080048059.01	MsG0180001919.01	0.836887	7.189879e-57	9.184442e-54
MsG0080048611.01	MsG0180001919.01	0.811088	8.339341e-51	5.114756e-48
MsG0080048694.01	MsG0180001919.01	0.812300	4.543405e-51	2.878133e-48
MsG0080048695.01	MsG0180001919.01	0.812323	4.491298e-51	2.846884e-48
MsG0080048697.01	MsG0180001919.01	0.867655	1.165738e-65	4.101228e-62
MsG0080048917.01	MsG0180001919.01	0.803986	2.682837e-49	1.367387e-46
MsG0080049015.01	MsG0180001919.01	0.835740	1.407444e-56	1.736779e-53
MsG0080049072.01	MsG0180001919.01	0.805072	1.592398e-49	8.345982e-47
MsG0080049076.01	MsG0180001919.01	0.841179	5.557942e-58	8.100682e-55
MsG0080049077.01	MsG0180001919.01	0.979943	4.309183e-149	9.700334e-143
MsG0180000193.01	MsG0180001919.01	0.807993	3.853191e-50	2.177450e-47
MsG0180000194.01	MsG0180001919.01	0.806603	7.591026e-50	4.137587e-47
MsG0180000306.01	MsG0180001919.01	0.840727	7.305755e-58	1.050070e-54
MsG0180000325.01	MsG0180001919.01	0.818067	2.378215e-52	1.761983e-49
MsG0180000467.01	MsG0180001919.01	0.811036	8.559660e-51	5.242794e-48
MsG0180001264.01	MsG0180001919.01	-0.802217	6.229914e-49	3.034533e-46
MsG0180001507.01	MsG0180001919.01	0.826417	2.744802e-54	2.572657e-51
MsG0180001919.01	MsG0180002227.01	0.805111	1.563196e-49	8.200853e-47
MsG0180001919.01	MsG0180003296.01	0.816609	5.064104e-52	3.605120e-49
MsG0180001919.01	MsG0180003757.01	0.802297	5.997242e-49	2.927373e-46
MsG0180001919.01	MsG0180003779.01	0.840540	8.176075e-58	1.168326e-54
MsG0180001919.01	MsG0180003904.01	0.815668	8.216710e-52	5.700968e-49
MsG0180001919.01	MsG0180003985.01	0.833991	3.879927e-56	4.543214e-53
MsG0180001919.01	MsG0180004177.01	0.826043	3.368491e-54	3.123728e-51
MsG0180001919.01	MsG0180004292.01	0.816087	6.624191e-52	4.649127e-49
MsG0180001919.01	MsG0180004553.01	0.814035	1.891074e-51	1.255110e-48
MsG0180001919.01	MsG0180005291.01	0.802236	6.173720e-49	3.008663e-46
MsG0180001919.01	MsG0180006212.01	0.802955	4.388057e-49	2.177956e-46
MsG0180001919.01	MsG0280006336.01	0.833508	5.123579e-56	5.912793e-53
MsG0180001919.01	MsG0280006452.01	0.815036	1.135776e-51	7.744934e-49
MsG0180001919.01	MsG0280007041.01	0.815271	1.007194e-51	6.912262e-49
MsG0180001919.01	MsG0280007042.01	0.810578	1.075167e-50	6.505194e-48
MsG0180001919.01	MsG0280007233.01	0.823057	1.700163e-53	1.448318e-50
MsG0180001919.01	MsG0280007247.01	0.816467	5.447465e-52	3.862905e-49
MsG0180001919.01	MsG0280007649.01	0.800733	1.254700e-48	5.886082e-46
MsG0180001919.01	MsG0280007650.01	0.800203	1.609105e-48	7.447726e-46
MsG0180001919.01	MsG0280009776.01	0.825095	5.651635e-54	5.101524e-51
MsG0180001919.01	MsG0280010142.01	0.821662	3.584102e-53	2.934239e-50
MsG0180001919.01	MsG0280010143.01	0.873764	1.142111e-67	5.014681e-64
MsG0180001919.01	MsG0280010144.01	0.867533	1.275565e-65	4.468515e-62
MsG0180001919.01	MsG0280010704.01	0.836310	1.008422e-56	1.266166e-53
MsG0180001919.01	MsG0280010780.01	0.805782	1.130229e-49	6.032855e-47
MsG0180001919.01	MsG0280011301.01	0.813064	3.092865e-51	1.999235e-48
MsG0180001919.01	MsG0380012065.01	0.828127	1.068389e-54	1.052405e-51
MsG0180001919.01	MsG0380012281.01	0.816165	6.364574e-52	4.476368e-49
MsG0180001919.01	MsG0380013506.01	0.801151	1.030673e-48	4.886839e-46
MsG0180001919.01	MsG0380013887.01	0.807958	3.919348e-50	2.212853e-47
MsG0180001919.01	MsG0380013888.01	0.831871	1.305830e-55	1.435530e-52
MsG0180001919.01	MsG0380013891.01	0.841674	4.118599e-58	6.095989e-55
MsG0180001919.01	MsG0380013918.01	0.826736	2.302745e-54	2.177959e-51
MsG0180001919.01	MsG0380013919.01	0.862566	4.627294e-64	1.361183e-60
MsG0180001919.01	MsG0380013921.01	0.865544	5.467323e-65	1.785619e-61
MsG0180001919.01	MsG0380013925.01	0.840261	9.673336e-58	1.370353e-54
MsG0180001919.01	MsG0380013926.01	0.813224	2.852348e-51	1.851767e-48
MsG0180001919.01	MsG0380013928.01	0.826543	2.561389e-54	2.409168e-51
MsG0180001919.01	MsG0380013931.01	0.805761	1.142151e-49	6.093317e-47
MsG0180001919.01	MsG0380013932.01	0.816179	6.317615e-52	4.445042e-49
MsG0180001919.01	MsG0380013935.01	0.827702	1.351794e-54	1.315051e-51
MsG0180001919.01	MsG0380013938.01	0.850977	1.197322e-60	2.387339e-57
MsG0180001919.01	MsG0380013940.01	0.802343	5.867460e-49	2.867357e-46
MsG0180001919.01	MsG0380013943.01	0.815850	7.481795e-52	5.216647e-49
MsG0180001919.01	MsG0380013945.01	0.834717	2.549689e-56	3.050698e-53
MsG0180001919.01	MsG0380013953.01	0.816220	6.187542e-52	4.358453e-49
MsG0180001919.01	MsG0380013954.01	0.889159	3.108538e-73	2.479374e-69
MsG0180001919.01	MsG0380013956.01	0.858997	5.607607e-63	1.458737e-59
MsG0180001919.01	MsG0380013957.01	0.815754	7.860241e-52	5.466830e-49
MsG0180001919.01	MsG0380013963.01	0.803565	3.280429e-49	1.654005e-46
MsG0180001919.01	MsG0380013964.01	0.809429	1.900831e-50	1.115777e-47
MsG0180001919.01	MsG0380013966.01	0.826309	2.911104e-54	2.720091e-51
MsG0180001919.01	MsG0380013967.01	0.819813	9.534596e-53	7.414753e-50
MsG0180001919.01	MsG0380013971.01	0.844747	6.242101e-59	1.017628e-55
MsG0180001919.01	MsG0380013975.01	0.862870	3.730791e-64	1.109296e-60
MsG0180001919.01	MsG0380013976.01	0.813868	2.058296e-51	1.359917e-48
MsG0180001919.01	MsG0380013977.01	0.826975	2.019724e-54	1.923689e-51
MsG0180001919.01	MsG0380013981.01	0.806088	9.746327e-50	5.243088e-47
MsG0180001919.01	MsG0380013983.01	0.810856	9.362242e-51	5.706985e-48
MsG0180001919.01	MsG0380013984.01	0.809900	1.505624e-50	8.948620e-48
MsG0180001919.01	MsG0380013985.01	0.827240	1.745178e-54	1.675174e-51
MsG0180001919.01	MsG0380013986.01	0.806689	7.282298e-50	3.977976e-47
MsG0180001919.01	MsG0380013997.01	0.805963	1.035431e-49	5.552600e-47
MsG0180001919.01	MsG0380013999.01	0.841339	5.046881e-58	7.392153e-55
MsG0180001919.01	MsG0380014004.01	0.829249	5.722847e-55	5.825387e-52
MsG0180001919.01	MsG0380014005.01	0.826223	3.052307e-54	2.845025e-51
MsG0180001919.01	MsG0380014006.01	0.808448	3.082113e-50	1.762808e-47
MsG0180001919.01	MsG0380014016.01	0.802492	5.467320e-49	2.681795e-46
MsG0180001919.01	MsG0380014017.01	0.836113	1.131688e-56	1.412343e-53
MsG0180001919.01	MsG0380014020.01	0.826202	3.086738e-54	2.875514e-51
MsG0180001919.01	MsG0380014021.01	0.863282	2.782029e-64	8.388886e-61
MsG0180001919.01	MsG0380014023.01	0.803136	4.025805e-49	2.007385e-46
MsG0180001919.01	MsG0380014024.01	0.836272	1.031171e-56	1.293220e-53
MsG0180001919.01	MsG0380014028.01	0.811242	7.720924e-51	4.754616e-48
MsG0180001919.01	MsG0380014029.01	0.816202	6.244639e-52	4.396540e-49
MsG0180001919.01	MsG0380014032.01	0.836661	8.208612e-57	1.041335e-53
MsG0180001919.01	MsG0380014034.01	0.803822	2.901514e-49	1.472565e-46
MsG0180001919.01	MsG0380014035.01	0.830276	3.216499e-55	3.372931e-52
MsG0180001919.01	MsG0380014036.01	0.806146	9.479153e-50	5.106853e-47
MsG0180001919.01	MsG0380014050.01	0.865270	6.670640e-65	2.157281e-61
MsG0180001919.01	MsG0380015271.01	0.807214	5.638798e-50	3.122521e-47
MsG0180001919.01	MsG0380015348.01	0.822448	2.355920e-53	1.972574e-50
MsG0180001919.01	MsG0380015439.01	0.821663	3.582164e-53	2.932776e-50
MsG0180001919.01	MsG0380015719.01	0.806645	7.438319e-50	4.058458e-47
MsG0180001919.01	MsG0380016241.01	0.810012	1.424188e-50	8.489990e-48
MsG0180001919.01	MsG0380016424.01	0.814129	1.802575e-51	1.199414e-48
MsG0180001919.01	MsG0380016531.01	0.823775	1.154964e-53	1.004113e-50
MsG0180001919.01	MsG0380016790.01	0.831772	1.381433e-55	1.514242e-52
MsG0180001919.01	MsG0380016835.01	0.809054	2.286579e-50	1.328824e-47
MsG0180001919.01	MsG0380016931.01	0.810991	8.752314e-51	5.354923e-48
MsG0180001919.01	MsG0380016934.01	0.810283	1.244651e-50	7.471808e-48
MsG0180001919.01	MsG0380016935.01	0.800100	1.688822e-48	7.796294e-46
MsG0180001919.01	MsG0380016960.01	0.816547	5.228155e-52	3.715488e-49
MsG0180001919.01	MsG0380017141.01	0.819984	8.714526e-53	6.809485e-50
MsG0180001919.01	MsG0380017309.01	0.825938	3.566742e-54	3.297893e-51
MsG0180001919.01	MsG0380017406.01	0.818275	2.134348e-52	1.590367e-49
MsG0180001919.01	MsG0380017895.01	0.820013	8.580954e-53	6.710550e-50
MsG0180001919.01	MsG0380017962.01	0.825676	4.117109e-54	3.778173e-51
MsG0180001919.01	MsG0380018072.01	0.832172	1.100170e-55	1.219966e-52
MsG0180001919.01	MsG0480018190.01	0.802465	5.539921e-49	2.715587e-46
MsG0180001919.01	MsG0480018296.01	0.802028	6.812250e-49	3.302288e-46
MsG0180001919.01	MsG0480018626.01	0.800204	1.608144e-48	7.443528e-46
MsG0180001919.01	MsG0480019028.01	0.807245	5.555270e-50	3.078772e-47
MsG0180001919.01	MsG0480020051.01	0.833824	4.271734e-56	4.977133e-53
MsG0180001919.01	MsG0480021143.01	0.802319	5.935231e-49	2.898790e-46
MsG0180001919.01	MsG0480021205.01	0.823674	1.219421e-53	1.057114e-50
MsG0180001919.01	MsG0480022295.01	0.844792	6.071621e-59	9.912859e-56
MsG0180001919.01	MsG0480022296.01	0.800538	1.375040e-48	6.418719e-46
MsG0180001919.01	MsG0480022417.01	0.810666	1.029119e-50	6.241475e-48
MsG0180001919.01	MsG0480022466.01	0.816666	4.916394e-52	3.505528e-49
MsG0180001919.01	MsG0480022837.01	0.812319	4.500502e-51	2.852417e-48
MsG0180001919.01	MsG0480023187.01	0.806342	8.618218e-50	4.666191e-47
MsG0180001919.01	MsG0480023217.01	0.814154	1.780508e-51	1.185520e-48
MsG0180001919.01	MsG0480023881.01	0.814017	1.908643e-51	1.266142e-48
MsG0180001919.01	MsG0580024128.01	0.808352	3.230296e-50	1.842944e-47
MsG0180001919.01	MsG0580024309.01	0.827434	1.568203e-54	1.513820e-51
MsG0180001919.01	MsG0580024571.01	0.808459	3.064789e-50	1.753422e-47
MsG0180001919.01	MsG0580024875.01	0.822656	2.107380e-53	1.774968e-50
MsG0180001919.01	MsG0580025392.01	0.803427	3.504828e-49	1.760747e-46
MsG0180001919.01	MsG0580027095.01	0.826390	2.785687e-54	2.608989e-51
MsG0180001919.01	MsG0580027249.01	0.821325	4.286893e-53	3.476701e-50
MsG0180001919.01	MsG0580027677.01	0.848316	6.623259e-60	1.210679e-56
MsG0180001919.01	MsG0680030439.01	0.835921	1.266295e-56	1.571059e-53
MsG0180001919.01	MsG0680030756.01	0.825531	4.456685e-54	4.072834e-51
MsG0180001919.01	MsG0680030757.01	0.834644	2.660319e-56	3.176469e-53
MsG0180001919.01	MsG0680030758.01	0.811701	6.137656e-51	3.825522e-48
MsG0180001919.01	MsG0680030759.01	0.804886	1.741856e-49	9.086477e-47
MsG0180001919.01	MsG0680031813.01	0.806685	7.295852e-50	3.984938e-47
MsG0180001919.01	MsG0680032055.01	0.809356	1.969932e-50	1.154166e-47
MsG0180001919.01	MsG0680034229.01	0.802661	5.047493e-49	2.486489e-46
MsG0180001919.01	MsG0780036064.01	0.855156	7.619862e-62	1.742641e-58
MsG0180001919.01	MsG0780036068.01	0.858713	6.820751e-63	1.756900e-59
MsG0180001919.01	MsG0780036909.01	0.817797	2.736434e-52	2.012610e-49
MsG0180001919.01	MsG0780038197.01	0.804826	1.793158e-49	9.339054e-47
MsG0180001919.01	MsG0780038198.01	0.897321	1.575239e-76	1.770214e-72
MsG0180001919.01	MsG0780038496.01	0.823793	1.143897e-53	9.949574e-51
MsG0180001919.01	MsG0780039596.01	0.826650	2.415097e-54	2.278590e-51
MsG0180001919.01	MsG0780039821.01	0.809317	2.008503e-50	1.175465e-47
MsG0180001919.01	MsG0780039859.01	0.817192	3.746426e-52	2.709885e-49
MsG0180001919.01	MsG0780039860.01	0.826092	3.280029e-54	3.045761e-51
MsG0180001919.01	MsG0780040121.01	0.836610	8.457904e-57	1.071283e-53
MsG0180001919.01	MsG0780040316.01	0.834907	2.283904e-56	2.748763e-53
MsG0180001919.01	MsG0780040317.01	0.815017	1.146404e-51	7.813560e-49
MsG0180001919.01	MsG0780040702.01	0.805548	1.265916e-49	6.716156e-47
MsG0180001919.01	MsG0780040833.01	0.819817	9.516640e-53	7.401373e-50
MsG0180001919.01	MsG0780040894.01	0.818484	1.913236e-52	1.433991e-49
MsG0180001919.01	MsG0780041007.01	0.812385	4.352986e-51	2.763843e-48
MsG0180001919.01	MsG0780041106.01	0.825746	3.962448e-54	3.643696e-51
MsG0180001919.01	MsG0780041478.01	0.804502	2.094618e-49	1.081733e-46
MsG0180001919.01	MsG0780041720.01	0.822039	2.931605e-53	2.425841e-50
MsG0180001919.01	MsG0780041783.01	0.802542	5.339230e-49	2.622351e-46
MsG0180001919.01	MsG0880041855.01	0.801664	8.093795e-49	3.887311e-46
MsG0180001919.01	MsG0880043032.01	0.802350	5.850454e-49	2.859503e-46
MsG0180001919.01	MsG0880044312.01	0.828473	8.819019e-55	8.774702e-52
MsG0180001919.01	MsG0880044352.01	0.817903	2.590730e-52	1.910841e-49
MsG0180001919.01	MsG0880044440.01	0.861947	7.168879e-64	2.063669e-60
MsG0180001919.01	MsG0880045188.01	0.813693	2.249023e-51	1.478935e-48
MsG0180001919.01	MsG0880045252.01	0.804863	1.761265e-49	9.181970e-47
MsG0180001919.01	MsG0880045413.01	0.819116	1.375037e-52	1.048730e-49
MsG0180001919.01	MsG0880045414.01	0.803248	3.816187e-49	1.908374e-46
MsG0180001919.01	MsG0880045778.01	0.838547	2.695777e-57	3.622752e-54
MsG0180001919.01	MsG0880046219.01	0.812146	4.910147e-51	3.097530e-48
MsG0180001919.01	MsG0880046462.01	0.831167	1.945749e-55	2.094574e-52
MsG0180001919.01	MsG0880046469.01	0.809200	2.128217e-50	1.241702e-47
MsG0180001919.01	MsG0880047318.01	0.829910	3.951571e-55	4.100652e-52
MsG0180001919.01	MsG0880047363.01	0.804109	2.529673e-49	1.293317e-46
MsG0180001919.01	MsG0880047628.01	0.835247	1.874996e-56	2.279994e-53
MsG0180001919.01	MsG0880047661.01	0.820880	5.428147e-53	4.348271e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001919.01.T01	MTR_8g056780	100.000	62	0	0	1	62	1	62	4.46e-36	115

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001919.01.T01	ATCG00300	96.774	62	2	0	1	62	1	62	5.01e-35	112

Find 9 sgRNAs with CRISPR-Local

Find 12 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGTACACCAATCAATAAAA+TGG	0.272913	1:-29376354	None:intergenic
GTTGTATTTGCTTCTCCTGA+TGG	0.417220	1:+29376377	MsG0180001919.01.T01:CDS
TATTTGCTTCTCCTGATGGT+TGG	0.468755	1:+29376381	MsG0180001919.01.T01:CDS
TCCGGTACATCATTATGGAT+TGG	0.474883	1:+29376428	MsG0180001919.01.T01:CDS
TTATTACTTGACCAACCATC+AGG	0.487376	1:-29376392	None:intergenic
TCCAATCCATAATGATGTAC+CGG	0.492547	1:-29376429	None:intergenic
TCAGGAGAAGCAAATACAAC+AGG	0.517061	1:-29376374	None:intergenic
ATTGGATTAGTATTTCTAGT+GGG	0.580331	1:+29376446	MsG0180001919.01.T01:CDS
GATTGGATTAGTATTTCTAG+TGG	0.595754	1:+29376445	MsG0180001919.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATAAAAATGTTGTATTTTC+CGG	+	Chr1:29376410-29376429	MsG0180001919.01.T01:CDS	15.0%
!!	ACTTCATCCATTTTATTGAT+TGG	+	Chr1:29376347-29376366	MsG0180001919.01.T01:CDS	25.0%
!!!	ATTGGATTAGTATTTCTAGT+GGG	+	Chr1:29376446-29376465	MsG0180001919.01.T01:CDS	25.0%
	AGGTACACCAATCAATAAAA+TGG	-	Chr1:29376357-29376376	None:intergenic	30.0%
!	TATTTTCCGGTACATCATTA+TGG	+	Chr1:29376423-29376442	MsG0180001919.01.T01:CDS	30.0%
!!	GATTGGATTAGTATTTCTAG+TGG	+	Chr1:29376445-29376464	MsG0180001919.01.T01:CDS	30.0%
	TCCAATCCATAATGATGTAC+CGG	-	Chr1:29376432-29376451	None:intergenic	35.0%
	TTATTACTTGACCAACCATC+AGG	-	Chr1:29376395-29376414	None:intergenic	35.0%
	GTTGTATTTGCTTCTCCTGA+TGG	+	Chr1:29376377-29376396	MsG0180001919.01.T01:CDS	40.0%
	TATTTGCTTCTCCTGATGGT+TGG	+	Chr1:29376381-29376400	MsG0180001919.01.T01:CDS	40.0%
	TCAGGAGAAGCAAATACAAC+AGG	-	Chr1:29376377-29376396	None:intergenic	40.0%
	TCCGGTACATCATTATGGAT+TGG	+	Chr1:29376428-29376447	MsG0180001919.01.T01:CDS	40.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	29376305	29376493	29376305	ID=MsG0180001919.01;Name=MsG0180001919.01
Chr1	mRNA	29376305	29376493	29376305	ID=MsG0180001919.01.T01;Parent=MsG0180001919.01;Name=MsG0180001919.01.T01;_AED=0.40;_eAED=0.40;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|62
Chr1	exon	29376305	29376493	29376305	ID=MsG0180001919.01.T01:exon:6722;Parent=MsG0180001919.01.T01
Chr1	CDS	29376305	29376493	29376305	ID=MsG0180001919.01.T01:cds;Parent=MsG0180001919.01.T01

Gene Sequence	>MsG0180001919.01.T01 ATGACTATTGCTTTTCAATTAGCTGTTTTTGCATTAATTGTTACTTCATCCATTTTATTGATTGGTGTACCTGTTGTATTTGCTTCTCCTGATGGTTGGTCAAGTAATAAAAATGTTGTATTTTCCGGTACATCATTATGGATTGGATTAGTATTTCTAGTGGGTATTCTTAATTCTCTCATCTCTTGA
Protein sequence	>MsG0180001919.01.T01 MTIAFQLAVFALIVTSSILLIGVPVVFASPDGWSSNKNVVFSGTSLWIGLVFLVGILNSLIS*