AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030758.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030758.01.T01 MTR_6g012080 98.491 265 4 0 1 265 1 265 0.0 531
MsG0680030758.01.T01 MTR_6g012110 96.226 265 10 0 1 265 1 265 0.0 521
MsG0680030758.01.T01 MTR_6g011890 95.472 265 12 0 1 265 1 265 0.0 511
MsG0680030758.01.T01 MTR_6g011880 93.962 265 16 0 1 265 1 265 0.0 499
MsG0680030758.01.T01 MTR_6g011870 93.962 265 16 0 1 265 1 265 0.0 499
MsG0680030758.01.T01 MTR_4g094605 91.353 266 22 1 1 265 1 266 1.36e-179 494
MsG0680030758.01.T01 MTR_5g097280 76.119 268 58 3 1 265 1 265 2.51e-149 418
MsG0680030758.01.T01 MTR_6g043600 78.868 265 20 3 1 265 1 229 2.14e-140 394
MsG0680030758.01.T01 MTR_2g081090 78.899 218 44 2 49 264 19 236 4.53e-120 343
MsG0680030758.01.T01 MTR_2g081090 78.899 218 44 2 49 264 46 263 6.94e-120 343
MsG0680030758.01.T01 MTR_6g060175 53.110 209 89 4 49 253 71 274 1.04e-64 204
MsG0680030758.01.T01 MTR_1g026550 51.389 216 94 6 49 253 107 322 7.16e-62 198
MsG0680030758.01.T01 MTR_6g060175 51.196 209 83 5 49 253 71 264 4.43e-58 186
MsG0680030758.01.T01 MTR_5g098785 36.559 279 141 10 1 253 1 269 1.44e-37 134
MsG0680030758.01.T01 MTR_6g033320 43.005 193 90 6 66 253 56 233 3.31e-36 129
MsG0680030758.01.T01 MTR_5g098780 35.842 279 141 11 1 253 1 267 4.91e-36 129
MsG0680030758.01.T01 MTR_8g023790 34.496 258 123 11 9 249 28 256 4.97e-35 127
MsG0680030758.01.T01 MTR_3g101670 37.438 203 95 6 64 249 66 253 3.01e-33 122
MsG0680030758.01.T01 MTR_2g042720 35.841 226 109 9 52 260 60 266 6.46e-31 116
MsG0680030758.01.T01 MTR_3g435460 35.025 197 104 5 65 252 62 243 8.20e-30 112
MsG0680030758.01.T01 MTR_1g026550 47.619 126 62 3 47 168 105 230 1.04e-28 109
MsG0680030758.01.T01 MTR_4g015570 36.325 234 91 9 64 253 62 281 8.44e-28 108
MsG0680030758.01.T01 MTR_3g435460 33.862 189 101 5 73 252 9 182 4.90e-26 101
MsG0680030758.01.T01 MTR_3g070340 44.516 155 65 8 93 243 137 274 5.41e-21 90.1
MsG0680030758.01.T01 MTR_5g098770 54.054 74 33 1 181 253 13 86 6.16e-21 85.1
MsG0680030758.01.T01 MTR_2g008610 33.333 207 88 8 66 242 73 259 2.30e-17 79.7
MsG0680030758.01.T01 MTR_2g436960 49.315 73 30 2 180 252 27 92 1.48e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030758.01.T01 AT1G29930 88.015 267 30 2 1 265 1 267 3.94e-172 476
MsG0680030758.01.T01 AT1G29920 87.640 267 31 2 1 265 1 267 2.63e-171 473
MsG0680030758.01.T01 AT1G29910 87.640 267 31 2 1 265 1 267 2.63e-171 473
MsG0680030758.01.T01 AT2G34430 88.015 267 29 3 1 265 1 266 1.24e-169 469
MsG0680030758.01.T01 AT2G34420 88.015 267 28 3 1 265 1 265 1.84e-169 469
MsG0680030758.01.T01 AT3G27690 78.229 271 48 4 2 265 32 298 3.35e-152 426
MsG0680030758.01.T01 AT3G27690 78.676 272 45 5 1 265 1 266 9.55e-152 424
MsG0680030758.01.T01 AT2G05070 77.985 268 53 3 1 265 1 265 1.05e-150 421
MsG0680030758.01.T01 AT2G05100 77.491 271 49 5 1 265 1 265 1.66e-149 418
MsG0680030758.01.T01 AT2G05100 76.955 243 44 5 1 237 1 237 4.66e-128 366
MsG0680030758.01.T01 AT5G54270 69.288 267 66 7 10 264 2 264 9.47e-120 343
MsG0680030758.01.T01 AT1G76570 47.162 229 111 5 35 253 92 320 2.18e-62 199
MsG0680030758.01.T01 AT4G10340 51.185 211 94 4 47 253 60 265 1.93e-60 192
MsG0680030758.01.T01 AT3G54890 44.041 193 88 6 66 253 55 232 2.16e-37 132
MsG0680030758.01.T01 AT1G61520 40.553 217 94 9 62 253 59 265 9.27e-37 131
MsG0680030758.01.T01 AT1G61520 40.553 217 94 9 62 253 59 265 9.27e-37 131
MsG0680030758.01.T01 AT1G45474 37.885 227 124 6 32 249 24 242 7.69e-36 129
MsG0680030758.01.T01 AT1G45474 37.885 227 124 6 32 249 24 242 7.69e-36 129
MsG0680030758.01.T01 AT3G61470 38.140 215 97 9 52 249 50 245 6.59e-35 126
MsG0680030758.01.T01 AT1G61520 39.130 207 91 9 73 254 15 211 1.78e-33 121
MsG0680030758.01.T01 AT3G47470 40.104 192 101 7 65 252 63 244 6.01e-31 115
MsG0680030758.01.T01 AT1G19150 35.398 226 110 8 52 260 63 269 3.02e-30 114
MsG0680030758.01.T01 AT3G08940 35.769 260 105 12 39 253 37 279 5.97e-28 108
MsG0680030758.01.T01 AT5G01530 37.339 233 88 10 65 253 64 282 2.32e-27 107
MsG0680030758.01.T01 AT3G54890 38.220 191 68 6 66 253 55 198 8.61e-24 95.9
MsG0680030758.01.T01 AT3G54890 40.764 157 74 5 66 218 55 196 1.43e-23 95.5
MsG0680030758.01.T01 AT2G40100 42.208 154 69 7 93 243 136 272 1.13e-22 94.4
MsG0680030758.01.T01 AT1G15820 33.816 207 87 7 66 242 70 256 2.11e-18 82.4
MsG0680030758.01.T01 AT5G28450 53.968 63 27 2 189 249 99 161 4.21e-13 66.2
MsG0680030758.01.T01 AT3G54890 42.353 85 41 2 66 149 55 132 3.85e-11 60.5

Find 107 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAGCATCCTCGCTATA+TGG 0.214996 6:+8689286 MsG0680030758.01.T01:CDS
TTAGCTATGTTCTCTATGTT+TGG 0.272123 6:+8689480 MsG0680030758.01.T01:CDS
GTTCTCCAGAGGTCCCTTTC+CGG 0.296943 6:-8689526 None:intergenic
GGCTTGCCAAGTAATCTTAA+TGG 0.312516 6:+8689308 MsG0680030758.01.T01:CDS
ATGGGCTATGTTGGGTGCAT+TGG 0.333471 6:+8689134 MsG0680030758.01.T01:CDS
TCCAGAAGGAACGTTCTTCT+TGG 0.344142 6:-8688941 None:intergenic
GACTATGGTTGGGACACTGC+TGG 0.354408 6:+8689051 MsG0680030758.01.T01:CDS
AAGTACTTGGGCCCATTCTC+TGG 0.361014 6:+8688991 MsG0680030758.01.T01:CDS
GGTGAATTTCCTGGTGACTA+TGG 0.363361 6:+8689036 MsG0680030758.01.T01:CDS
TCTCGCAATGGTGTCAAATT+CGG 0.364128 6:+8689180 MsG0680030758.01.T01:CDS
TGAAGGTGGGCTTGACTACT+TGG 0.367959 6:+8689242 MsG0680030758.01.T01:CDS
TACCTCACTGGTGAATTTCC+TGG 0.369528 6:+8689027 MsG0680030758.01.T01:CDS
CAGCTCCCATTAAGATTACT+TGG 0.370659 6:-8689314 None:intergenic
TTCGTTCAGGCCATTGTAAC+CGG 0.370708 6:+8689507 MsG0680030758.01.T01:CDS
CTCTCTTCTTCAACAATGGT+TGG 0.383826 6:+8688847 MsG0680030758.01.T01:CDS
TGGGCTATGTTGGGTGCATT+GGG 0.391652 6:+8689135 MsG0680030758.01.T01:CDS
CTTTGTGCATGAACTAGGCT+TGG 0.392370 6:-8689270 None:intergenic
ATTCTTCCCATGCCAAGGTC+TGG 0.397640 6:-8688898 None:intergenic
ACCAAGAAGAACGTTCCTTC+TGG 0.405063 6:+8688940 MsG0680030758.01.T01:CDS
CCCAAGTACTTGACACGGTC+TGG 0.410224 6:-8688979 None:intergenic
GCCCATGCGTTGTTGTTGAC+GGG 0.412241 6:-8689570 None:intergenic
TCCAGACCGTGTCAAGTACT+TGG 0.414229 6:+8688978 MsG0680030758.01.T01:CDS
TGTTGACGGGGTCAGCAATA+TGG 0.416907 6:-8689557 None:intergenic
GGCCCATGCGTTGTTGTTGA+CGG 0.418462 6:-8689571 None:intergenic
GTTGAGGGTTACCGTATTGC+TGG 0.430208 6:+8689336 MsG0680030758.01.T01:CDS
GGATGCTTTGTGCATGAACT+AGG 0.430981 6:-8689275 None:intergenic
CGTATTGCTGGTGGACCTCT+TGG 0.432323 6:+8689348 MsG0680030758.01.T01:CDS
CTTTCCTGGGACAAAGTTTG+TGG 0.442841 6:-8689598 None:intergenic
TCTCTTCTTCAACAATGGTT+GGG 0.445775 6:+8688848 MsG0680030758.01.T01:CDS
GGGTGGAAGCTTTGACCCAT+TGG 0.450353 6:+8689395 MsG0680030758.01.T01:CDS
GGCTCTCTCTTCTTCAACAA+TGG 0.456801 6:+8688843 MsG0680030758.01.T01:CDS
GGTGGAAGCTTTGACCCATT+GGG 0.457466 6:+8689396 MsG0680030758.01.T01:CDS
CCATAGCAGATGGGCTATGT+TGG 0.462149 6:+8689125 MsG0680030758.01.T01:CDS
CGGCGAGGCTGTGTGGTTCA+AGG 0.463771 6:+8689200 MsG0680030758.01.T01:CDS
ACAAAGCATCCTCGCTATAT+GGG 0.466861 6:+8689287 MsG0680030758.01.T01:CDS
GCTTGCCAAGTAATCTTAAT+GGG 0.468194 6:+8689309 MsG0680030758.01.T01:CDS
GATCATCAGCGAGGCCCAAT+GGG 0.474717 6:-8689410 None:intergenic
AATCTTAATGGGAGCTGTTG+AGG 0.477252 6:+8689320 MsG0680030758.01.T01:CDS
TTCAACTCAGCAAAAGCCTC+TGG 0.479411 6:-8689432 None:intergenic
CATAGCAGATGGGCTATGTT+GGG 0.481076 6:+8689126 MsG0680030758.01.T01:CDS
CAGGCCATTGTAACCGGAAA+GGG 0.483589 6:+8689513 MsG0680030758.01.T01:CDS
CACGGTCTGGACCGTACCAC+GGG 0.486076 6:-8688966 None:intergenic
AATTCACCAGTGAGGTAAGA+TGG 0.486152 6:-8689021 None:intergenic
ACTATGGTTGGGACACTGCT+GGG 0.487785 6:+8689052 MsG0680030758.01.T01:CDS
ATCTTAATGGGAGCTGTTGA+GGG 0.489714 6:+8689321 MsG0680030758.01.T01:CDS
ACCCCGTCAACAACAACGCA+TGG 0.492539 6:+8689568 MsG0680030758.01.T01:CDS
GATGGAGCTTCACCAGAGAA+TGG 0.493907 6:-8689003 None:intergenic
TTCTTCAACAATGGTTGGGA+AGG 0.494108 6:+8688852 MsG0680030758.01.T01:CDS
AATTTCCTGGTGACTATGGT+TGG 0.506431 6:+8689040 MsG0680030758.01.T01:CDS
AGCTTCCACCCGGGTAGAGT+GGG 0.507050 6:-8689383 None:intergenic
TTTGTGCATGAACTAGGCTT+GGG 0.507715 6:-8689269 None:intergenic
CCATTGCGAGACAAGAGCTC+AGG 0.510154 6:-8689168 None:intergenic
TTTGCCACAAACTTTGTCCC+AGG 0.513834 6:+8689594 MsG0680030758.01.T01:CDS
ATGGAGCTTCACCAGAGAAT+GGG 0.513997 6:-8689002 None:intergenic
TGGGACAAAGTTTGTGGCAA+AGG 0.514143 6:-8689592 None:intergenic
GAGGCTGTGTGGTTCAAGGC+AGG 0.515376 6:+8689204 MsG0680030758.01.T01:CDS
AGAAGGAACGTTCTTCTTGG+TGG 0.518277 6:-8688938 None:intergenic
CCAACATAGCCCATCTGCTA+TGG 0.520857 6:-8689125 None:intergenic
GGTAGTCGACCCACTCTACC+CGG 0.521175 6:+8689374 MsG0680030758.01.T01:CDS
GGATCATCAGCGAGGCCCAA+TGG 0.522174 6:-8689411 None:intergenic
TATGGATGACCTCAAGTTCA+CGG 0.522252 6:-8689107 None:intergenic
TGTAACCGGAAAGGGACCTC+TGG 0.531859 6:+8689521 MsG0680030758.01.T01:CDS
TGGTGATTCTTCCCATGCCA+AGG 0.534305 6:-8688903 None:intergenic
AAGCTTCCACCCGGGTAGAG+TGG 0.534876 6:-8689384 None:intergenic
TCTCCCTCTACTCCAGACCT+TGG 0.540217 6:+8688886 MsG0680030758.01.T01:CDS
CCTGAGCTCTTGTCTCGCAA+TGG 0.540276 6:+8689168 MsG0680030758.01.T01:CDS
TTGAGGTCATCCATAGCAGA+TGG 0.543946 6:+8689115 MsG0680030758.01.T01:CDS
CCTTCTGGAAGCCCGTGGTA+CGG 0.545378 6:+8688955 MsG0680030758.01.T01:CDS
ACACGGTCTGGACCGTACCA+CGG 0.551715 6:-8688967 None:intergenic
CATGCCAAGGTCTGGAGTAG+AGG 0.552117 6:-8688890 None:intergenic
CAAGAGGTCCACCAGCAATA+CGG 0.554867 6:-8689347 None:intergenic
GAAGCTCCATCTTACCTCAC+TGG 0.557671 6:+8689015 MsG0680030758.01.T01:CDS
TGAAAGAACTCAAGAATGGT+AGG 0.559512 6:+8689457 MsG0680030758.01.T01:CDS
ATGCCAAGGTCTGGAGTAGA+GGG 0.562060 6:-8688889 None:intergenic
CCCATGCGTTGTTGTTGACG+GGG 0.565011 6:-8689569 None:intergenic
ATTTCCTGGTGACTATGGTT+GGG 0.565504 6:+8689041 MsG0680030758.01.T01:CDS
AGGTCCCTTTCCGGTTACAA+TGG 0.576373 6:-8689517 None:intergenic
CCAGACCGTGTCAAGTACTT+GGG 0.581879 6:+8688979 MsG0680030758.01.T01:CDS
AAGGTGAAAGAACTCAAGAA+TGG 0.584740 6:+8689453 MsG0680030758.01.T01:CDS
CTCTACTCCAGACCTTGGCA+TGG 0.586599 6:+8688891 MsG0680030758.01.T01:CDS
TCAAATTCGGCGAGGCTGTG+TGG 0.588909 6:+8689193 MsG0680030758.01.T01:CDS
AATGGGTCAAAGCTTCCACC+CGG 0.596844 6:-8689393 None:intergenic
CCCCGTCAACAACAACGCAT+GGG 0.596948 6:+8689569 MsG0680030758.01.T01:CDS
TCAGGCCATTGTAACCGGAA+AGG 0.602000 6:+8689512 MsG0680030758.01.T01:CDS
TCTACTCCAGACCTTGGCAT+GGG 0.609820 6:+8688892 MsG0680030758.01.T01:CDS
TGCTGGTGGACCTCTTGGTG+AGG 0.612383 6:+8689353 MsG0680030758.01.T01:CDS
GTGTCCCAACCATAGTCACC+AGG 0.616804 6:-8689045 None:intergenic
CCGTACCACGGGCTTCCAGA+AGG 0.618214 6:-8688955 None:intergenic
GAGGGTTACCGTATTGCTGG+TGG 0.619713 6:+8689339 MsG0680030758.01.T01:CDS
GGGCCTCGCTGATGATCCAG+AGG 0.624243 6:+8689416 MsG0680030758.01.T01:CDS
TACAATGGCTACATCAACAA+TGG 0.627588 6:+8688822 None:intergenic
GAAGGTGGGCTTGACTACTT+GGG 0.630872 6:+8689243 MsG0680030758.01.T01:CDS
CATTGCGAGACAAGAGCTCA+GGG 0.631927 6:-8689167 None:intergenic
TGAGGTCATCCATAGCAGAT+GGG 0.639446 6:+8689116 MsG0680030758.01.T01:CDS
GGTCAGCAATATGGTCAGCA+AGG 0.646252 6:-8689548 None:intergenic
GTAGTCGACCCACTCTACCC+GGG 0.676420 6:+8689375 MsG0680030758.01.T01:CDS
CTTGGCAAGCCCATATAGCG+AGG 0.679095 6:-8689296 None:intergenic
GGGTCGACTACCTCACCAAG+AGG 0.687407 6:-8689363 None:intergenic
ATGGGTCAAAGCTTCCACCC+GGG 0.687648 6:-8689392 None:intergenic
ACGTTCCTTCTGGAAGCCCG+TGG 0.688327 6:+8688950 MsG0680030758.01.T01:CDS
GTCGACCCACTCTACCCGGG+TGG 0.691664 6:+8689378 MsG0680030758.01.T01:CDS
TGGTCAGCAAGGTTCTCCAG+AGG 0.701983 6:-8689537 None:intergenic
CAATGGTGTCAAATTCGGCG+AGG 0.704270 6:+8689185 MsG0680030758.01.T01:CDS
ATGGGCCCAAGTACTTGACA+CGG 0.711188 6:-8688984 None:intergenic
CACCAGGAAATTCACCAGTG+AGG 0.714950 6:-8689029 None:intergenic
AAGCCTCTGGATCATCAGCG+AGG 0.746493 6:-8689419 None:intergenic
GCATGGGAAGAATCACCATG+AGG 0.752016 6:+8688908 MsG0680030758.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
TTAGCTATGTTCTCTATGTT+TGG + Chr6:8689480-8689499 MsG0680030758.01.T01:CDS 30.0%
! TATGTTTGGATTTTTCGTTC+AGG + Chr6:8689494-8689513 MsG0680030758.01.T01:CDS 30.0%
AAGGTGAAAGAACTCAAGAA+TGG + Chr6:8689453-8689472 MsG0680030758.01.T01:CDS 35.0%
CCCACCTTCACTAAAAATTT+GGG - Chr6:8689232-8689251 None:intergenic 35.0%
GCTTGCCAAGTAATCTTAAT+GGG + Chr6:8689309-8689328 MsG0680030758.01.T01:CDS 35.0%
TCTCTTCTTCAACAATGGTT+GGG + Chr6:8688848-8688867 MsG0680030758.01.T01:CDS 35.0%
TGAAAGAACTCAAGAATGGT+AGG + Chr6:8689457-8689476 MsG0680030758.01.T01:CDS 35.0%
!!! CCCAAATTTTTAGTGAAGGT+GGG + Chr6:8689229-8689248 MsG0680030758.01.T01:CDS 35.0%
!!! GGATCCCAAATTTTTAGTGA+AGG + Chr6:8689225-8689244 MsG0680030758.01.T01:CDS 35.0%
!!! TCCCAAATTTTTAGTGAAGG+TGG + Chr6:8689228-8689247 MsG0680030758.01.T01:CDS 35.0%
AATCTTAATGGGAGCTGTTG+AGG + Chr6:8689320-8689339 MsG0680030758.01.T01:CDS 40.0%
AATTCACCAGTGAGGTAAGA+TGG - Chr6:8689024-8689043 None:intergenic 40.0%
AATTTCCTGGTGACTATGGT+TGG + Chr6:8689040-8689059 MsG0680030758.01.T01:CDS 40.0%
ATCTTAATGGGAGCTGTTGA+GGG + Chr6:8689321-8689340 MsG0680030758.01.T01:CDS 40.0%
ATTTCCTGGTGACTATGGTT+GGG + Chr6:8689041-8689060 MsG0680030758.01.T01:CDS 40.0%
CAGCTCCCATTAAGATTACT+TGG - Chr6:8689317-8689336 None:intergenic 40.0%
CTCTCTTCTTCAACAATGGT+TGG + Chr6:8688847-8688866 MsG0680030758.01.T01:CDS 40.0%
GCCCACCTTCACTAAAAATT+TGG - Chr6:8689233-8689252 None:intergenic 40.0%
GGCTTGCCAAGTAATCTTAA+TGG + Chr6:8689308-8689327 MsG0680030758.01.T01:CDS 40.0%
TATGGATGACCTCAAGTTCA+CGG - Chr6:8689110-8689129 None:intergenic 40.0%
TTCTTCAACAATGGTTGGGA+AGG + Chr6:8688852-8688871 MsG0680030758.01.T01:CDS 40.0%
TTTGTGCATGAACTAGGCTT+GGG - Chr6:8689272-8689291 None:intergenic 40.0%
! ACAAAGCATCCTCGCTATAT+GGG + Chr6:8689287-8689306 MsG0680030758.01.T01:CDS 40.0%
! TCTCGCAATGGTGTCAAATT+CGG + Chr6:8689180-8689199 MsG0680030758.01.T01:CDS 40.0%
!!! ACGGTTTTTGGCAAATGTCT+CGG - Chr6:8689091-8689110 None:intergenic 40.0%
ACCAAGAAGAACGTTCCTTC+TGG + Chr6:8688940-8688959 MsG0680030758.01.T01:CDS 45.0%
AGAAGGAACGTTCTTCTTGG+TGG - Chr6:8688941-8688960 None:intergenic 45.0%
ATGGAGCTTCACCAGAGAAT+GGG - Chr6:8689005-8689024 None:intergenic 45.0%
CTTTCCTGGGACAAAGTTTG+TGG - Chr6:8689601-8689620 None:intergenic 45.0%
CTTTGTGCATGAACTAGGCT+TGG - Chr6:8689273-8689292 None:intergenic 45.0%
GGATGCTTTGTGCATGAACT+AGG - Chr6:8689278-8689297 None:intergenic 45.0%
GGCTCTCTCTTCTTCAACAA+TGG + Chr6:8688843-8688862 MsG0680030758.01.T01:CDS 45.0%
GGTGAATTTCCTGGTGACTA+TGG + Chr6:8689036-8689055 MsG0680030758.01.T01:CDS 45.0%
TACCTCACTGGTGAATTTCC+TGG + Chr6:8689027-8689046 MsG0680030758.01.T01:CDS 45.0%
TCCAGAAGGAACGTTCTTCT+TGG - Chr6:8688944-8688963 None:intergenic 45.0%
TGAGGTCATCCATAGCAGAT+GGG + Chr6:8689116-8689135 MsG0680030758.01.T01:CDS 45.0%
TGCCAAAAACCGTGAACTTG+AGG + Chr6:8689098-8689117 MsG0680030758.01.T01:CDS 45.0%
TGGGACAAAGTTTGTGGCAA+AGG - Chr6:8689595-8689614 None:intergenic 45.0%
TTCAACTCAGCAAAAGCCTC+TGG - Chr6:8689435-8689454 None:intergenic 45.0%
TTCGTTCAGGCCATTGTAAC+CGG + Chr6:8689507-8689526 MsG0680030758.01.T01:CDS 45.0%
TTGAGGTCATCCATAGCAGA+TGG + Chr6:8689115-8689134 MsG0680030758.01.T01:CDS 45.0%
TTTGCCACAAACTTTGTCCC+AGG + Chr6:8689594-8689613 MsG0680030758.01.T01:CDS 45.0%
! CACAAAGCATCCTCGCTATA+TGG + Chr6:8689286-8689305 MsG0680030758.01.T01:CDS 45.0%
! GACCTCAAGTTCACGGTTTT+TGG - Chr6:8689103-8689122 None:intergenic 45.0%
!! AGAGGCTTTTGCTGAGTTGA+AGG + Chr6:8689434-8689453 MsG0680030758.01.T01:CDS 45.0%
!! CATAGCAGATGGGCTATGTT+GGG + Chr6:8689126-8689145 MsG0680030758.01.T01:CDS 45.0%
!! CTTGGTGGTTGTTTTCCTCA+TGG - Chr6:8688926-8688945 None:intergenic 45.0%
!!! CGGTTTTTGGCAAATGTCTC+GGG - Chr6:8689090-8689109 None:intergenic 45.0%
!!! GGTTTTTGGCAAATGTCTCG+GGG - Chr6:8689089-8689108 None:intergenic 45.0%
AAGTACTTGGGCCCATTCTC+TGG + Chr6:8688991-8689010 MsG0680030758.01.T01:CDS 50.0%
AATGGGTCAAAGCTTCCACC+CGG - Chr6:8689396-8689415 None:intergenic 50.0%
ACTATGGTTGGGACACTGCT+GGG + Chr6:8689052-8689071 MsG0680030758.01.T01:CDS 50.0%
AGGTCCCTTTCCGGTTACAA+TGG - Chr6:8689520-8689539 None:intergenic 50.0%
ATGGGCCCAAGTACTTGACA+CGG - Chr6:8688987-8689006 None:intergenic 50.0%
ATTCTTCCCATGCCAAGGTC+TGG - Chr6:8688901-8688920 None:intergenic 50.0%
CAAGAGGTCCACCAGCAATA+CGG - Chr6:8689350-8689369 None:intergenic 50.0%
CACCAGGAAATTCACCAGTG+AGG - Chr6:8689032-8689051 None:intergenic 50.0%
CAGGCCATTGTAACCGGAAA+GGG + Chr6:8689513-8689532 MsG0680030758.01.T01:CDS 50.0%
CATTGCGAGACAAGAGCTCA+GGG - Chr6:8689170-8689189 None:intergenic 50.0%
CCAACATAGCCCATCTGCTA+TGG - Chr6:8689128-8689147 None:intergenic 50.0%
CCAGACCGTGTCAAGTACTT+GGG + Chr6:8688979-8688998 MsG0680030758.01.T01:CDS 50.0%
GAAGCTCCATCTTACCTCAC+TGG + Chr6:8689015-8689034 MsG0680030758.01.T01:CDS 50.0%
GATGGAGCTTCACCAGAGAA+TGG - Chr6:8689006-8689025 None:intergenic 50.0%
GCATGGGAAGAATCACCATG+AGG + Chr6:8688908-8688927 MsG0680030758.01.T01:CDS 50.0%
GGTCAGCAATATGGTCAGCA+AGG - Chr6:8689551-8689570 None:intergenic 50.0%
GTTGAGGGTTACCGTATTGC+TGG + Chr6:8689336-8689355 MsG0680030758.01.T01:CDS 50.0%
TCAGGCCATTGTAACCGGAA+AGG + Chr6:8689512-8689531 MsG0680030758.01.T01:CDS 50.0%
TCCAGACCGTGTCAAGTACT+TGG + Chr6:8688978-8688997 MsG0680030758.01.T01:CDS 50.0%
TCTACTCCAGACCTTGGCAT+GGG + Chr6:8688892-8688911 MsG0680030758.01.T01:CDS 50.0%
TGGGCTATGTTGGGTGCATT+GGG + Chr6:8689135-8689154 MsG0680030758.01.T01:CDS 50.0%
TGGTGATTCTTCCCATGCCA+AGG - Chr6:8688906-8688925 None:intergenic 50.0%
TGTTGACGGGGTCAGCAATA+TGG - Chr6:8689560-8689579 None:intergenic 50.0%
! ATGCCAAGGTCTGGAGTAGA+GGG - Chr6:8688892-8688911 None:intergenic 50.0%
! ATGGGCTATGTTGGGTGCAT+TGG + Chr6:8689134-8689153 MsG0680030758.01.T01:CDS 50.0%
! CAATGGTGTCAAATTCGGCG+AGG + Chr6:8689185-8689204 MsG0680030758.01.T01:CDS 50.0%
! GAAGGTGGGCTTGACTACTT+GGG + Chr6:8689243-8689262 MsG0680030758.01.T01:CDS 50.0%
! GGTGGAAGCTTTGACCCATT+GGG + Chr6:8689396-8689415 MsG0680030758.01.T01:CDS 50.0%
! TGAAGGTGGGCTTGACTACT+TGG + Chr6:8689242-8689261 MsG0680030758.01.T01:CDS 50.0%
!! CCATAGCAGATGGGCTATGT+TGG + Chr6:8689125-8689144 MsG0680030758.01.T01:CDS 50.0%
AAGCCTCTGGATCATCAGCG+AGG - Chr6:8689422-8689441 None:intergenic 55.0%
ACCCCGTCAACAACAACGCA+TGG + Chr6:8689568-8689587 MsG0680030758.01.T01:CDS 55.0%
ATGGGTCAAAGCTTCCACCC+GGG - Chr6:8689395-8689414 None:intergenic 55.0%
CCATTGCGAGACAAGAGCTC+AGG - Chr6:8689171-8689190 None:intergenic 55.0%
CCCAAGTACTTGACACGGTC+TGG - Chr6:8688982-8689001 None:intergenic 55.0%
CCCCGTCAACAACAACGCAT+GGG + Chr6:8689569-8689588 MsG0680030758.01.T01:CDS 55.0%
CCTGAGCTCTTGTCTCGCAA+TGG + Chr6:8689168-8689187 MsG0680030758.01.T01:CDS 55.0%
CTCTACTCCAGACCTTGGCA+TGG + Chr6:8688891-8688910 MsG0680030758.01.T01:CDS 55.0%
CTTGGCAAGCCCATATAGCG+AGG - Chr6:8689299-8689318 None:intergenic 55.0%
GACTATGGTTGGGACACTGC+TGG + Chr6:8689051-8689070 MsG0680030758.01.T01:CDS 55.0%
GAGGGTTACCGTATTGCTGG+TGG + Chr6:8689339-8689358 MsG0680030758.01.T01:CDS 55.0%
GATCATCAGCGAGGCCCAAT+GGG - Chr6:8689413-8689432 None:intergenic 55.0%
GTGTCCCAACCATAGTCACC+AGG - Chr6:8689048-8689067 None:intergenic 55.0%
GTTCTCCAGAGGTCCCTTTC+CGG - Chr6:8689529-8689548 None:intergenic 55.0%
TCAAATTCGGCGAGGCTGTG+TGG + Chr6:8689193-8689212 MsG0680030758.01.T01:CDS 55.0%
TCTCCCTCTACTCCAGACCT+TGG + Chr6:8688886-8688905 MsG0680030758.01.T01:CDS 55.0%
TGGTCAGCAAGGTTCTCCAG+AGG - Chr6:8689540-8689559 None:intergenic 55.0%
TGTAACCGGAAAGGGACCTC+TGG + Chr6:8689521-8689540 MsG0680030758.01.T01:CDS 55.0%
! CATGCCAAGGTCTGGAGTAG+AGG - Chr6:8688893-8688912 None:intergenic 55.0%
! CCCATGCGTTGTTGTTGACG+GGG - Chr6:8689572-8689591 None:intergenic 55.0%
! CGTATTGCTGGTGGACCTCT+TGG + Chr6:8689348-8689367 MsG0680030758.01.T01:CDS 55.0%
! GCCCATGCGTTGTTGTTGAC+GGG - Chr6:8689573-8689592 None:intergenic 55.0%
! GGCCCATGCGTTGTTGTTGA+CGG - Chr6:8689574-8689593 None:intergenic 55.0%
! GGGTGGAAGCTTTGACCCAT+TGG + Chr6:8689395-8689414 MsG0680030758.01.T01:CDS 55.0%
AAGCTTCCACCCGGGTAGAG+TGG - Chr6:8689387-8689406 None:intergenic 60.0%
ACACGGTCTGGACCGTACCA+CGG - Chr6:8688970-8688989 None:intergenic 60.0%
AGCTTCCACCCGGGTAGAGT+GGG - Chr6:8689386-8689405 None:intergenic 60.0%
GAGGCTGTGTGGTTCAAGGC+AGG + Chr6:8689204-8689223 MsG0680030758.01.T01:CDS 60.0%
GGATCATCAGCGAGGCCCAA+TGG - Chr6:8689414-8689433 None:intergenic 60.0%
GGGTCGACTACCTCACCAAG+AGG - Chr6:8689366-8689385 None:intergenic 60.0%
GGTAGTCGACCCACTCTACC+CGG + Chr6:8689374-8689393 MsG0680030758.01.T01:CDS 60.0%
GTAGTCGACCCACTCTACCC+GGG + Chr6:8689375-8689394 MsG0680030758.01.T01:CDS 60.0%
! ACGTTCCTTCTGGAAGCCCG+TGG + Chr6:8688950-8688969 MsG0680030758.01.T01:CDS 60.0%
! CCTTCTGGAAGCCCGTGGTA+CGG + Chr6:8688955-8688974 MsG0680030758.01.T01:CDS 60.0%
! TGCTGGTGGACCTCTTGGTG+AGG + Chr6:8689353-8689372 MsG0680030758.01.T01:CDS 60.0%
CACGGTCTGGACCGTACCAC+GGG - Chr6:8688969-8688988 None:intergenic 65.0%
CCGTACCACGGGCTTCCAGA+AGG - Chr6:8688958-8688977 None:intergenic 65.0%
CGGCGAGGCTGTGTGGTTCA+AGG + Chr6:8689200-8689219 MsG0680030758.01.T01:CDS 65.0%
GGGCCTCGCTGATGATCCAG+AGG + Chr6:8689416-8689435 MsG0680030758.01.T01:CDS 65.0%
GTCGACCCACTCTACCCGGG+TGG + Chr6:8689378-8689397 MsG0680030758.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 8688826 8689623 8688826 ID=MsG0680030758.01;Name=MsG0680030758.01
Chr6 mRNA 8688826 8689623 8688826 ID=MsG0680030758.01.T01;Parent=MsG0680030758.01;Name=MsG0680030758.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|265
Chr6 exon 8688826 8689623 8688826 ID=MsG0680030758.01.T01:exon:7207;Parent=MsG0680030758.01.T01
Chr6 CDS 8688826 8689623 8688826 ID=MsG0680030758.01.T01:cds;Parent=MsG0680030758.01.T01
Gene Sequence

>MsG0680030758.01.T01

ATGGCTACATCAACAATGGCTCTCTCTTCTTCAACAATGGTTGGGAAGGCAATCAAGCTTTCTCCCTCTACTCCAGACCTTGGCATGGGAAGAATCACCATGAGGAAAACAACCACCAAGAAGAACGTTCCTTCTGGAAGCCCGTGGTACGGTCCAGACCGTGTCAAGTACTTGGGCCCATTCTCTGGTGAAGCTCCATCTTACCTCACTGGTGAATTTCCTGGTGACTATGGTTGGGACACTGCTGGGCTTTCTGCTGACCCCGAGACATTTGCCAAAAACCGTGAACTTGAGGTCATCCATAGCAGATGGGCTATGTTGGGTGCATTGGGATGCGTCTTCCCTGAGCTCTTGTCTCGCAATGGTGTCAAATTCGGCGAGGCTGTGTGGTTCAAGGCAGGATCCCAAATTTTTAGTGAAGGTGGGCTTGACTACTTGGGTAACCCAAGCCTAGTTCATGCACAAAGCATCCTCGCTATATGGGCTTGCCAAGTAATCTTAATGGGAGCTGTTGAGGGTTACCGTATTGCTGGTGGACCTCTTGGTGAGGTAGTCGACCCACTCTACCCGGGTGGAAGCTTTGACCCATTGGGCCTCGCTGATGATCCAGAGGCTTTTGCTGAGTTGAAGGTGAAAGAACTCAAGAATGGTAGGTTAGCTATGTTCTCTATGTTTGGATTTTTCGTTCAGGCCATTGTAACCGGAAAGGGACCTCTGGAGAACCTTGCTGACCATATTGCTGACCCCGTCAACAACAACGCATGGGCCTTTGCCACAAACTTTGTCCCAGGAAAGTAA

Protein sequence

>MsG0680030758.01.T01

MATSTMALSSSTMVGKAIKLSPSTPDLGMGRITMRKTTTKKNVPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK*